Contig-U08768-1
Contig ID Contig-U08768-1
Contig update 2002. 9.13
Contig sequence
>Contig-U08768-1 (Contig-U08768-1Q) /CSM_Contig/Contig-U08768-1Q.Seq.d
TGGTAAACAAAGTAATATTTATTCACCTGAAGAAATTAATAACAACACTA
ATAATAAAAATTCAGTTTTATTAGATGCAAATGATAAAAATGAAAATAAT
AATAATAATAATGATGATGCTGATGATGCTGCTGCAGATGATGCAGATGA
TGCAGATGATGATGATATGGATGATGAAAGCGATAGTAATAACAATAACA
AAAACAGTAACAATAAAAACAGCAACAATAAAAACAGCAACGAAAATAAT
AAAAATAAAAGAACTAAAAGTTCATCTAAATCTCCACAATTACCTGGATT
ATGGACAGATGAAGAATGTAGGTCATTAATTAAGGCTGTAATGATAATAG
GTCATAGATGGATAAAGATTAAGGAGGATTATTATTCAACATCAAAAAGA
AAACCAAGTCAACTTAAAGATAAAATGAGATCATTAAGAAAAAGATATGG
GGATATCAAAAATATTGCAATTGCTTATTTCACTAAAGCAGAAATTATCG
AAATAGAAAAATTGGCCGTTCTATTCCAACAAAAGGAAGAAGCTCAAAAA
TTAGCAAAAGAAAAAATTGATTCATTATCAAATATAAAATCAACC-----
-----TTNATCANAGNAATNNANTCGANCNCCNNACNNNNCCAACAAAGN
NNNNCNAGTCANACTCCAACNNCTCCAACCAAAAAATCAAATCAAACTCC
GNCCACACCAACCAAGAAACCAAGTCAAACTCCAAANACTCCCACTAAAA
AACCAAACCAAACTCCAACCACACCAACAAAGAAATCAAGTCAAACTCCA
ATAACTCCAACTAAAAAATCAACAAATAGACCAAAATCAATTGAAGAGGA
AGAAAATGAACAAGAGGAACAACATGAAAAAAATCAAAATAAACCACTTA
AAAAAAGAGTGTCAGAAGATTGGTCAAACTCATCAGATAAAACTTCAAAT
AAAAGATTCAAAAGTCCAGAAACTTTAAATAAGGATTCAAAAGAAAATAA
AAAAACAATTTCCAATTCAAGAAGAAAATAAATAAATAAAAATAAAAATA
AATATGTTTTT

Gap gap included
Contig length 1051
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1849111
End point 1848059
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U08768
List of clone(s)

est1=AFH408F,1,596
est2=AFH408Z,597,1053
Translated Amino Acid sequence
GKQSNIYSPEEINNNTNNKNSVLLDANDKNENNNNNNDDADDAAADDADDADDDDMDDES
DSNNNNKNSNNKNSNNKNSNENNKNKRTKSSSKSPQLPGLWTDEECRSLIKAVMIIGHRW
IKIKEDYYSTSKRKPSQLKDKMRSLRKRYGDIKNIAIAYFTKAEIIEIEKLAVLFQQKEE
AQKLAKEKIDSLSNIKST---

---XIXXXXSXXXXXQQXXXSXTPTXPTKKSNQTPXTPTKKPSQTPXTPTKKPNQTPTTP
TKKSSQTPITPTKKSTNRPKSIEEEENEQEEQHEKNQNKPLKKRVSEDWSNSSDKTSNKR
FKSPETLNKDSKENKKTISNSRRK*inknknkyvf


Translated Amino Acid sequence (All Frames)
Frame A:
w*tk*ylft*rn**qh***kfsfirck**k*k*******c**cccr*cr*cr***yg**k
r***q*qkq*q*kqqq*kqqrk**k*kn*kfi*istitwimdr*rm*vin*gcndnrs*m
dkd*ggllfnikkktkst*r*neiikkkiwgyqkycnclfh*srnyrnrkigrsiptkgr
sskiskrkn*fiikykin---

---XIXXXXSXXXXXQQXXXSXTPTXPTKKSNQTPXTPTKKPSQTPXTPTKKPNQTPTTP
TKKSSQTPITPTKKSTNRPKSIEEEENEQEEQHEKNQNKPLKKRVSEDWSNSSDKTSNKR
FKSPETLNKDSKENKKTISNSRRK*inknknkyvf

Frame B:
GKQSNIYSPEEINNNTNNKNSVLLDANDKNENNNNNNDDADDAAADDADDADDDDMDDES
DSNNNNKNSNNKNSNNKNSNENNKNKRTKSSSKSPQLPGLWTDEECRSLIKAVMIIGHRW
IKIKEDYYSTSKRKPSQLKDKMRSLRKRYGDIKNIAIAYFTKAEIIEIEKLAVLFQQKEE
AQKLAKEKIDSLSNIKST---

---xsxxxxrxpxxxnkxxxvxlqxlqpknqiklrphqprnqvklqxlplknqtklqphq
qrnqvklq*lqlknqqidqnqlkrkkmnkrnnmkkikinhlkkecqkigqthqiklqikd
skvqkl*iriqkkikkqfpiqeenk*ikikinmf

Frame C:
vnkvifihlkklittliikiqfy*mqmikmkiiiiimmmlmmllqmmqmmqmmmiwmmka
ivititktvtiktatiktatkiikikelkvhlnlhnyldygqmknvgh*lrl****vidg
*rlrriiiqhqkenqvnlkik*dh*ekdmgiskilqllislkqklsk*knwpfysnkrkk
lkn*qkkklihyqi*nq---

---xxxnxxxxxtxptkxxxsxsnxsnqkiksnsxhtnqetksnskxsh*ktkpnsnhtn
keiksnsnnsn*kink*tkin*rgrk*trgtt*kksk*tt*kksvrrlvklir*nfk*ki
qksrnfk*gfkrk*knnfqfkkkink*k*k*icf

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U08768-1 (Contig-U08768-1Q)
/CSM_Contig/Contig-U08768-1Q.Seq.d
(1061 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U08768-1 (Contig-U08768-1Q) /CSM_Contig/Conti... 646 0.0
Contig-U06890-1 (Contig-U06890-1Q) /CSM_Contig/Conti... 48 2e-05
Contig-U05795-1 (Contig-U05795-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U13795-1 (Contig-U13795-1Q) /CSM_Contig/Conti... 38 0.019
Contig-U12334-1 (Contig-U12334-1Q) /CSM_Contig/Conti... 38 0.019
Contig-U11853-1 (Contig-U11853-1Q) /CSM_Contig/Conti... 38 0.019
Contig-U10383-1 (Contig-U10383-1Q) /CSM_Contig/Conti... 38 0.019
Contig-U08011-1 (Contig-U08011-1Q) /CSM_Contig/Conti... 38 0.019
Contig-U14711-1 (Contig-U14711-1Q) /CSM_Contig/Conti... 36 0.075

>Contig-U08768-1 (Contig-U08768-1Q) /CSM_Contig/Contig-U08768-1Q.Seq.d
Length = 1061

Score = 646 bits (326), Expect = 0.0
Identities = 326/326 (100%)
Strand = Plus / Plus


Query: 270 gttcatctaaatctccacaattacctggattatggacagatgaagaatgtaggtcattaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttcatctaaatctccacaattacctggattatggacagatgaagaatgtaggtcattaa 329


Query: 330 ttaaggctgtaatgataataggtcatagatggataaagattaaggaggattattattcaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttaaggctgtaatgataataggtcatagatggataaagattaaggaggattattattcaa 389


Query: 390 catcaaaaagaaaaccaagtcaacttaaagataaaatgagatcattaagaaaaagatatg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 catcaaaaagaaaaccaagtcaacttaaagataaaatgagatcattaagaaaaagatatg 449


Query: 450 gggatatcaaaaatattgcaattgcttatttcactaaagcagaaattatcgaaatagaaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gggatatcaaaaatattgcaattgcttatttcactaaagcagaaattatcgaaatagaaa 509


Query: 510 aattggccgttctattccaacaaaaggaagaagctcaaaaattagcaaaagaaaaaattg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aattggccgttctattccaacaaaaggaagaagctcaaaaattagcaaaagaaaaaattg 569


Query: 570 attcattatcaaatataaaatcaacc 595
||||||||||||||||||||||||||
Sbjct: 570 attcattatcaaatataaaatcaacc 595


Score = 214 bits (108), Expect = 1e-55
Identities = 108/108 (100%)
Strand = Plus / Plus


Query: 769 ccacaccaacaaagaaatcaagtcaaactccaataactccaactaaaaaatcaacaaata 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ccacaccaacaaagaaatcaagtcaaactccaataactccaactaaaaaatcaacaaata 828


Query: 829 gaccaaaatcaattgaagaggaagaaaatgaacaagaggaacaacatg 876
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 gaccaaaatcaattgaagaggaagaaaatgaacaagaggaacaacatg 876


Score = 145 bits (73), Expect = 1e-34
Identities = 73/73 (100%)
Strand = Plus / Plus


Query: 1 tggtaaacaaagtaatatttattcacctgaagaaattaataacaacactaataataaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtaaacaaagtaatatttattcacctgaagaaattaataacaacactaataataaaaa 60


Query: 61 ttcagttttatta 73
|||||||||||||
Sbjct: 61 ttcagttttatta 73


Score = 73.8 bits (37), Expect = 3e-13
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 657 agtcanactccaacnnctccaaccaaaaaatcaaatcaaactccgncca 705
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agtcanactccaacnnctccaaccaaaaaatcaaatcaaactccgncca 705


Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus


Query: 907 gagtgtcagaagattggtcaaactcatcaga 937
|||||||||||||||||||||||||||||||
Sbjct: 907 gagtgtcagaagattggtcaaactcatcaga 937


Score = 61.9 bits (31), Expect = 1e-09
Identities = 45/50 (90%)
Strand = Plus / Plus


Query: 769 ccacaccaacaaagaaatcaagtcaaactccaataactccaactaaaaaa 818
|||||||||| |||||| ||||||||||||||| ||||| |||||||||
Sbjct: 703 ccacaccaaccaagaaaccaagtcaaactccaaanactcccactaaaaaa 752


Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1006 caatttccaattcaagaag 1024
|||||||||||||||||||
Sbjct: 1006 caatttccaattcaagaag 1024


Score = 34.2 bits (17), Expect = 0.30
Identities = 29/34 (85%)
Strand = Plus / Plus


Query: 789 agtcaaactccaataactccaactaaaaaatcaa 822
||||| ||||||| ||||||| ||||||||||
Sbjct: 657 agtcanactccaacnnctccaaccaaaaaatcaa 690


Score = 30.2 bits (15), Expect = 4.6
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 178 aagcgatagtaataa 192
|||||||||||||||
Sbjct: 178 aagcgatagtaataa 192


>Contig-U06890-1 (Contig-U06890-1Q) /CSM_Contig/Contig-U06890-1Q.Seq.d
Length = 468

Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 34 aattaataacaacactaataataaaaat 61
|||||||||||||| |||||||||||||
Sbjct: 413 aattaataacaacaataataataaaaat 440


>Contig-U05795-1 (Contig-U05795-1Q) /CSM_Contig/Contig-U05795-1Q.Seq.d
Length = 555

Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus


Query: 843 gaagaggaagaaaatgaacaagaggaacaacatg 876
|||||||||||| ||||| |||||||| ||||||
Sbjct: 85 gaagaggaagaacatgaagaagaggaagaacatg 118


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,116
Number of Sequences: 6905
Number of extensions: 13116
Number of successful extensions: 1667
Number of sequences better than 10.0: 177
length of query: 1061
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1045
effective length of database: 5,564,391
effective search space: 5814788595
effective search space used: 5814788595
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA
Query= Contig-U08768-1 (Contig-U08768-1Q) /CSM_Contig/Contig-U08768-1Q.Seq.d
(1061 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ326292) Dictyostelium discoideum cDNA clone:dda15p02, 5' ... 515 e-162 2
(BJ342871) Dictyostelium discoideum cDNA clone:dda15p02, 3' ... 70 3e-20 2
(AQ028310) CIT-HSP-2323I7.TR CIT-HSP Homo sapiens genomic cl... 40 0.31 2
(AM269411) Phyllomedusa hypochondrialis azurea partial mRNA ... 48 0.68 1
(AM229014) Phyllomedusa hypochondrialis mRNA for phyllosepti... 48 0.68 1
(AM229013) Phyllomedusa hypochondrialis mRNA for phyllosepti... 48 0.68 1
(AM229012) Phyllomedusa hypochondrialis mRNA for phyllosepti... 48 0.68 1
(BV424989) S237P638RC8.T0 PortugueseWaterDog Canis familiari... 48 0.68 1
(CE775869) tigr-gss-dog-17000316975043 Dog Library Canis lup... 48 0.68 1
(CK404186) AUF_IfHdk_244_k06 Ictalurus furcatus head kidney ... 48 0.68 1
(DQ481663) Takifugu rubripes HoxAa gene cluster, complete se... 46 2.7 1
(AC115508) Rattus norvegicus 2 BAC CH230-355B17 (Children's ... 46 2.7 1
(AM270372) Aspergillus niger contig An16c0200, complete genome. 46 2.7 1
(CU856702) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.7 1
(AC177738) Strongylocentrotus purpuratus clone R3-1008I24, W... 46 2.7 1
(EC825804) SME00004971 esmbsro2 Sawyeria marylandensis cDNA,... 46 2.7 1
(DU960806) 231914 Tomato MboI BAC Library Solanum lycopersic... 36 2.8 2
(AC198784) Zea mays chromosome unknown clone CH201-192O2; ZM... 42 6.0 2
(AF191076) Stealth virus 1 clone 3B520, genomic sequence. 32 6.4 2
(AF065798) Stealth virus 1 clone 3B520 T3. 32 6.8 2

>(BJ326292) Dictyostelium discoideum cDNA clone:dda15p02, 5' end,
single read.
Length = 596

Score = 515 bits (260), Expect(2) = e-162
Identities = 260/260 (100%)
Strand = Plus / Plus


Query: 270 gttcatctaaatctccacaattacctggattatggacagatgaagaatgtaggtcattaa 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 gttcatctaaatctccacaattacctggattatggacagatgaagaatgtaggtcattaa 329


Query: 330 ttaaggctgtaatgataataggtcatagatggataaagattaaggaggattattattcaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttaaggctgtaatgataataggtcatagatggataaagattaaggaggattattattcaa 389


Query: 390 catcaaaaagaaaaccaagtcaacttaaagataaaatgagatcattaagaaaaagatatg 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 catcaaaaagaaaaccaagtcaacttaaagataaaatgagatcattaagaaaaagatatg 449


Query: 450 gggatatcaaaaatattgcaattgcttatttcactaaagcagaaattatcgaaatagaaa 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gggatatcaaaaatattgcaattgcttatttcactaaagcagaaattatcgaaatagaaa 509


Query: 510 aattggccgttctattccaa 529
||||||||||||||||||||
Sbjct: 510 aattggccgttctattccaa 529

Score = 95.6 bits (48), Expect(2) = e-162
Identities = 48/48 (100%)
Strand = Plus / Plus


Query: 1 tggtaaacaaagtaatatttattcacctgaagaaattaataacaacac 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtaaacaaagtaatatttattcacctgaagaaattaataacaacac 48

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 505,923,862
Number of extensions: 32539918
Number of successful extensions: 2637163
Number of sequences better than 10.0: 21
Length of query: 1061
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1037
Effective length of database: 97,308,875,965
Effective search space: 100909304375705
Effective search space used: 100909304375705
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U08768-1 (Contig-U08768-1Q) /CSM_Contig/Contig-U08768-1Q.Seq.d
(1061 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54X08) RecName: Full=Myb-like protein V; 197 5e-49
AK071645_1(AK071645|pid:none) Oryza sativa Japonica Group cDNA c... 43 0.021
CU633899_596(CU633899|pid:none) Podospora anserina genomic DNA c... 38 0.52
CP000917_86(CP000917|pid:none) Enterobacteria phage EPS7, comple... 35 4.4
(Q08AE8) RecName: Full=Protein spire homolog 1; Short=S... 35 5.8
AL844508_247(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 34 9.9

>(Q54X08) RecName: Full=Myb-like protein V;
Length = 711

Score = 197 bits (501), Expect = 5e-49
Identities = 116/198 (58%), Positives = 116/198 (58%)
Frame = +2

Query: 2 GKQSNIYSPEEIXXXXXXXXSVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 181
GKQSNIYSPEEI SVLL
Sbjct: 142 GKQSNIYSPEEINNNTNNKNSVLLDANDKNENNNNNNDDADDAAADDADDADDDDMDDES 201

Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXXKRTKSSSKSPQLPGLWTDEECRSLIKAVMIIGHRW 361
KRTKSSSKSPQLPGLWTDEECRSLIKAVMIIGHRW
Sbjct: 202 DSNNNNKNSNNKNSNNKNSNENNKNKRTKSSSKSPQLPGLWTDEECRSLIKAVMIIGHRW 261

Query: 362 IKIKEDYYSTSKRKPSQLKDKMRSLRKRYGDIKNIAIAYFTKAEIIEIEKLAVLFXXXXX 541
IKIKEDYYSTSKRKPSQLKDKMRSLRKRYGDIKNIAIAYFTKAEIIEIEKLAVLF
Sbjct: 262 IKIKEDYYSTSKRKPSQLKDKMRSLRKRYGDIKNIAIAYFTKAEIIEIEKLAVLFQQKEE 321

Query: 542 XXXXXXXXIDSLSNIKST 595
IDSLSNIKST
Sbjct: 322 AQKLAKEKIDSLSNIKST 339

Score = 86.3 bits (212), Expect = 2e-15
Identities = 44/61 (72%), Positives = 44/61 (72%)
Frame = +3

Query: 825 NRPKSIXXXXXXXXXXXXXXXXXPLKKRVSEDWSNSSDKTSNKRFKSPETLNKDSKENKK 1004
NRPKSI PLKKRVSEDWSNSSDKTSNKRFKSPETLNKDSKENKK
Sbjct: 644 NRPKSIEEEENEQEEQHEKNQNKPLKKRVSEDWSNSSDKTSNKRFKSPETLNKDSKENKK 703

Query: 1005 T 1007
T
Sbjct: 704 T 704

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 801,522,850
Number of extensions: 15314577
Number of successful extensions: 29278
Number of sequences better than 10.0: 6
Number of HSP's gapped: 29260
Number of HSP's successfully gapped: 7
Length of query: 353
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 224
Effective length of database: 627,614,014
Effective search space: 140585539136
Effective search space used: 140585539136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.00 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.21 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for Contig-U08768-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0