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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08762-1
Contig ID Contig-U08762-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08762-1 (Contig-U08762-1Q) /CSM_Contig/Contig-U08762-1Q.Seq.d
CTAACTCAATTGAGACAAATGGGAATTAGAACAAATGAACAAGAGATAAT
TTCACAATTTGGAAATTATTATGAAGTATTTTCAAAAGAAAATAATTTAT
TAAAAAATCCTCATTTTTCAAAATGTGAAATTACAAAATTAAATGAAATT
GAAATTTTAAATAATCCAATTTCAATTGAAATTAAAAATTTTGAATATAA
GGAAGAATTTTTAATGAAAAAACAATATTTATTATGTAATGAAGAAATTA
AAAATGATACTGATATGGTTTTATTAGCAAAGAATGTTGATACTTTAAAT
TTAAAAATCCCACCAGAAACAAAGTCAATTGCATATTTTGATGATAAAAT
ACCATTTAATGGTGAACCAATAAAAAGTACAAAAATCGGAACTTTAAACT
TTTTTTCAAATGCACCATCAATTTCGAAAGATACTATACCAAAAAATAAT
ATTCATACACTTTATTTTTCATTTGGATATAATAAATTAATTGAACCTGG
TGTTATTCCAGAGAATATTAAGATTATTCATTTTGGTAATATAGAAAATA
AGGTTTTAGTAGAAGGTTCAATTCCAAATACTGTAGAAACAATTCATTTT
CATGGTGAATTTAAATTAAAATTAGAGAAAAACATTATACCAAATAATGT
T----------TTATTTTANAAAAAGGATTTAACCAACCNCTACCNCCTT
TTATAATTCCAAANAACGTAATTNGTATGGAGATTGGNGCAATTCAATCA
AAATTANAAAAAGGATCCTTACCAGAATCAGTAGAAAACTTACAATTTAA
AAAGGGATTCAACCNAATTATAACTAAAGATTTATTATTAAATAATAATA
AATTGATTTCAGTTGAATTTAGTGATATATTAAAAAGAATAGATTTAGAT
TCNCTTCCNCCATCATTAAAANAATTAAAGTTTGNTTCTAATTTTTCNCA
CCCNAAAGATATAAAATATGNAACAGNACCCCCAAAATTTGTTAAAGAAT
TTATAAACNCTGGNGNCCGNCCTGAAGTTATCNATCNATCNTTTTTTAAN
ACATTGNAATAATAATTTTTAATTAAAAAAAAAAAAATAATAAATTAATA
AAC
Gap gap included
Contig length 1093
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5038104
End point 5039199
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U08762
List of clone(s) 

est1=AFH165F,1,652
est2=AFH165Z,653,1095
Translated Amino Acid sequence 
LTQLRQMGIRTNEQEIISQFGNYYEVFSKENNLLKNPHFSKCEITKLNEIEILNNPISIE
IKNFEYKEEFLMKKQYLLCNEEIKNDTDMVLLAKNVDTLNLKIPPETKSIAYFDDKIPFN
GEPIKSTKIGTLNFFSNAPSISKDTIPKNNIHTLYFSFGYNKLIEPGVIPENIKIIHFGN
IENKVLVEGSIPNTVETIHFHGEFKLKLEKNIIPNNV---

---ILXKGFNQPLPPFIIPXNVIXMEIGAIQSKLXKGSLPESVENLQFKKGFNXIITKDL
LLNNNKLISVEFSDILKRIDLDSLPPSLKXLKFXSNFSHPKDIKYXTXPPKFVKEFINXG
XRPEVIXXSFFXTLX**flikkkkiin**
Translated Amino Acid sequence (All Frames) 
Frame A:
LTQLRQMGIRTNEQEIISQFGNYYEVFSKENNLLKNPHFSKCEITKLNEIEILNNPISIE
IKNFEYKEEFLMKKQYLLCNEEIKNDTDMVLLAKNVDTLNLKIPPETKSIAYFDDKIPFN
GEPIKSTKIGTLNFFSNAPSISKDTIPKNNIHTLYFSFGYNKLIEPGVIPENIKIIHFGN
IENKVLVEGSIPNTVETIHFHGEFKLKLEKNIIPNNV---

---lfxkkdltnxyxll*fqxt*xvwrlxqfnqnxkkdpyqnq*ktynlkrdstxl*lki
yy*iiin*fqlnlviy*ke*i*ixfxhh*xn*slxlifxtxki*nmxqxpqnllknl*tl
xxxlklsixxflxhxnnnf*lkkkk**ink

Frame B:
*ln*dkweleqmnkr*fhnleiimkyfqkkiiy*kilifqnvklqn*mklkf*iiqfqlk
lkilnirknf**knniyyvmkklkmiliwfy*qrmlil*i*kshqkqsqlhilmikyhlm
vnq*kvqksel*tffqmhhqfrkilyqkiifihfifhldiin*lnlvlfqrilrlfilvi
*kirf**kvqfqil*kqfifmvnln*n*rktlyqim---

---yfxkri*ptxtxfynskxrnxygdwxnsikixkriltrisrklti*kgiqpnyn*rf
iik***idfs*i**yikknrfrfxsxiikxikvxf*ffxpxrykixnxtpkic*riykxw
xpx*syxsixf*xixiiifn*kkknnklin

Frame C:
nsietngn*nk*trdnftiwkll*sifkrk*fikkssffkm*nykik*n*nfk*snfn*n
*kf*i*grifnektifim**rn*k*y*ygfiskec*yfkfknptrnkvncif***nti*w
*tnkkyknrnfklffkctinferyytkk*ysytlffiwi**in*twcysrey*dysfw*y
rk*gfsrrfnskycrnnsfsw*i*ikirekhytk*c---

---ILXKGFNQPLPPFIIPXNVIXMEIGAIQSKLXKGSLPESVENLQFKKGFNXIITKDL
LLNNNKLISVEFSDILKRIDLDSLPPSLKXLKFXSNFSHPKDIKYXTXPPKFVKEFINXG
XRPEVIXXSFFXTLX**flikkkkiin**
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08762-1 (Contig-U08762-1Q)
/CSM_Contig/Contig-U08762-1Q.Seq.d
         (1103 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08762-1 (Contig-U08762-1Q) /CSM_Contig/Conti...  1465  0.0
Contig-U10398-1 (Contig-U10398-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U10739-1 (Contig-U10739-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09506-1 (Contig-U09506-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09472-1 (Contig-U09472-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12458-1 (Contig-U12458-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U10201-1 (Contig-U10201-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U09385-1 (Contig-U09385-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U09185-1 (Contig-U09185-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U03750-1 (Contig-U03750-1Q) /CSM_Contig/Conti...    38  0.020

>Contig-U08762-1 (Contig-U08762-1Q) /CSM_Contig/Contig-U08762-1Q.Seq.d
          Length = 1103

 Score = 1465 bits (739), Expect = 0.0
 Identities = 870/883 (98%)
 Strand = Plus / Plus

                                                                        
Query: 192  tgaatataaggaagaatttttaatgaaaaaacaatatttattatgtaatgaagaaattaa 251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192  tgaatataaggaagaatttttaatgaaaaaacaatatttattatgtaatgaagaaattaa 251

                                                                        
Query: 252  aaatgatactgatatggttttattagcaaagaatgttgatactttaaatttaaaaatccc 311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252  aaatgatactgatatggttttattagcaaagaatgttgatactttaaatttaaaaatccc 311

                                                                        
Query: 312  accagaaacaaagtcaattgcatattttgatgataaaataccatttaatggtgaaccaat 371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312  accagaaacaaagtcaattgcatattttgatgataaaataccatttaatggtgaaccaat 371

                                                                        
Query: 372  aaaaagtacaaaaatcggaactttaaacnnnnnnncaaatgcaccatcaatttcgaaaga 431
            ||||||||||||||||||||||||||||       |||||||||||||||||||||||||
Sbjct: 372  aaaaagtacaaaaatcggaactttaaactttttttcaaatgcaccatcaatttcgaaaga 431

                                                                        
Query: 432  tactataccaaaaaataatattcatacactttatttttcatttggatataataaattaat 491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432  tactataccaaaaaataatattcatacactttatttttcatttggatataataaattaat 491

                                                                        
Query: 492  tgaacctggtgttattccagagaatattaagattattcattttggtaatatagaaaataa 551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492  tgaacctggtgttattccagagaatattaagattattcattttggtaatatagaaaataa 551

                                                                        
Query: 552  ggttttagtagaaggttcaattccaaatactgtagaaacaattcattttcatggtgaatt 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552  ggttttagtagaaggttcaattccaaatactgtagaaacaattcattttcatggtgaatt 611

                                                                        
Query: 612  taaattaaaattagagaaaaacattataccaaataatgttnnnnnnnnnnttattttana 671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612  taaattaaaattagagaaaaacattataccaaataatgttnnnnnnnnnnttattttana 671

                                                                        
Query: 672  aaaaggatttaaccaaccnctaccnccttttataattccaaanaacgtaattngtatgga 731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  aaaaggatttaaccaaccnctaccnccttttataattccaaanaacgtaattngtatgga 731

                                                                        
Query: 732  gattggngcaattcaatcaaaattanaaaaaggatccttaccagaatcagtagaaaactt 791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  gattggngcaattcaatcaaaattanaaaaaggatccttaccagaatcagtagaaaactt 791

                                                                        
Query: 792  acaatttaaaaagggattcaaccnaattataactaaagatttattattaaataataataa 851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  acaatttaaaaagggattcaaccnaattataactaaagatttattattaaataataataa 851

                                                                        
Query: 852  attgatttcagttgaatttagtgatatattaaaaagaatagatttagattcncttccncc 911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  attgatttcagttgaatttagtgatatattaaaaagaatagatttagattcncttccncc 911

                                                                        
Query: 912  atcattnnnnnnnttaaagtttgnttctaatttttcncacccnaaagatataaaatatgn 971
            ||||||    |  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  atcattaaaanaattaaagtttgnttctaatttttcncacccnaaagatataaaatatgn 971

                                                                        
Query: 972  aacagnacccccaaaatttgttaaagaatttataaacnctggngnccgncctgaagttat 1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  aacagnacccccaaaatttgttaaagaatttataaacnctggngnccgncctgaagttat 1031

                                                       
Query: 1032 cnatcnatcnttttttaanacattgnaataataatttttaatt 1074
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 cnatcnatcnttttttaanacattgnaataataatttttaatt 1074


 Score =  190 bits (96), Expect = 2e-48
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctaactcaattgagacaaatgggaattagaacaaatgaacaagagataatttcacaattt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctaactcaattgagacaaatgggaattagaacaaatgaacaagagataatttcacaattt 60

                                              
Query: 61 ggaaattattatgaagtattttcaaaagaaaataat 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaaattattatgaagtattttcaaaagaaaataat 96


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1088 taataaattaataaac 1103
            ||||||||||||||||
Sbjct: 1088 taataaattaataaac 1103


 Score = 32.2 bits (16), Expect = 1.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                   
Query: 830 atttattattaaataataataaat 853
           |||||||||||  |||||||||||
Sbjct: 853 atttattattatttaataataaat 830


>Contig-U10398-1 (Contig-U10398-1Q) /CSM_Contig/Contig-U10398-1Q.Seq.d
          Length = 1102

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 830 atttattattaaataataataa 851
           ||||||||||||||||||||||
Sbjct: 98  atttattattaaataataataa 119


 Score = 30.2 bits (15), Expect = 4.8
 Identities = 21/23 (91%)
 Strand = Plus / Minus

                                  
Query: 832 ttattattaaataataataaatt 854
           |||||||||  ||||||||||||
Sbjct: 119 ttattattatttaataataaatt 97


>Contig-U10739-1 (Contig-U10739-1Q) /CSM_Contig/Contig-U10739-1Q.Seq.d
          Length = 1027

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 607  gaatttaaattaaaattaga 626
            ||||||||||||||||||||
Sbjct: 985  gaatttaaattaaaattaga 1004


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,107
Number of Sequences: 6905
Number of extensions: 35107
Number of successful extensions: 3753
Number of sequences better than 10.0: 403
length of query: 1103
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1087
effective length of database: 5,564,391
effective search space: 6048493017
effective search space used: 6048493017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA 
Query= Contig-U08762-1 (Contig-U08762-1Q) /CSM_Contig/Contig-U08762-1Q.Seq.d
         (1103 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   662   0.0    5
(BJ326156) Dictyostelium discoideum cDNA clone:dda15a17, 5' ...   486   0.0    3
(BJ342935) Dictyostelium discoideum cDNA clone:dda15a17, 3' ...   670   0.0    2
(CP000727) Clostridium botulinum A str. Hall, complete genome.     36   1e-04  16
(U36927) Plasmodium yoelii rhoptry protein gene, complete cds.     34   1e-04  7
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    36   1e-04  16
(AM285321) Spiroplasma citri GII3-3X chromosome, contig Cont...    42   5e-04  8
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    38   7e-04  17
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    34   0.001  13
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   0.008  14
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    36   0.009  17
(BJ389273) Dictyostelium discoideum cDNA clone:dds18m06, 5' ...    52   0.009  2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   0.010  13
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.012  12
(AC141119) Rattus norvegicus clone CH230-131I4, *** SEQUENCI...    50   0.015  6
(AC159388) Bos taurus clone CH240-20I20, WORKING DRAFT SEQUE...    50   0.019  6
(AL929392) Zebrafish DNA sequence from clone CH211-79L17 in ...    50   0.040  4
(CP000728) Clostridium botulinum F str. Langeland, complete ...    36   0.044  18
(BJ389549) Dictyostelium discoideum cDNA clone:dds19m06, 5' ...    52   0.046  1
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    38   0.047  7
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    46   0.054  15
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   0.059  15
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    38   0.081  13
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   0.089  15
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    34   0.096  12
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    46   0.13   14
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.13   12
(DB769915) Apis mellifera head cDNA, RIKEN full-length enric...    34   0.13   3
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    32   0.13   11
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   0.13   12
(AL035476) Plasmodium falciparum MAL4P3.                           32   0.14   12
(DB771244) Apis mellifera head cDNA, RIKEN full-length enric...    34   0.16   3
(DB770671) Apis mellifera head cDNA, RIKEN full-length enric...    34   0.16   3
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.16   12
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    36   0.17   16
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       32   0.18   12
(AC105153) Mus musculus chromosome 17, clone RP24-376L20, co...    50   0.18   1
(AC099597) Mus musculus chromosome 17, clone RP23-78K9, comp...    50   0.18   1
(AC194990) Pan troglodytes BAC clone CH251-551K5 from chromo...    50   0.18   1
(AL031116) Human DNA sequence from clone RP5-878O8 on chromo...    50   0.18   1
(AC132778) Rattus norvegicus clone CH230-262C3, *** SEQUENCI...    50   0.18   1
(AC131551) Rattus norvegicus clone CH230-11A22, *** SEQUENCI...    50   0.18   1
(AC129285) Rattus norvegicus clone CH230-6C19, *** SEQUENCIN...    50   0.18   1
(AC127785) Rattus norvegicus clone CH230-127O17, *** SEQUENC...    50   0.18   1
(AC127715) Rattus norvegicus clone CH230-59C22, *** SEQUENCI...    50   0.18   1
(AC124889) Rattus norvegicus clone CH230-1C21, *** SEQUENCIN...    50   0.18   1
(AC121618) Rattus norvegicus clone CH230-180N10, *** SEQUENC...    50   0.18   1
(AC120091) Rattus norvegicus clone CH230-480B23, *** SEQUENC...    50   0.18   1
(AC117031) Rattus norvegicus clone CH230-199N15, *** SEQUENC...    50   0.18   1
(AC111967) Rattus norvegicus clone CH230-186D16, *** SEQUENC...    50   0.18   1
(AC109856) Rattus norvegicus clone CH230-272A6, *** SEQUENCI...    50   0.18   1
(AC101676) Mus musculus clone RP23-136H21, WORKING DRAFT SEQ...    50   0.18   1
(AC095759) Rattus norvegicus clone CH230-3C1, *** SEQUENCING...    50   0.18   1
(CU468620) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.18   1
(AC223634) Bos taurus clone CH240-463E9, WORKING DRAFT SEQUE...    50   0.18   1
(CT454225) Sus scrofa genomic clone CH242-452A10, genomic su...    50   0.18   1
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    30   0.18   13
(AP005672) Physcomitrella patens subsp. patens chloroplast D...    36   0.20   8
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   0.20   13
(AM181592) Dictyostelium discoideum AX2 mRNA for Trix, Rac g...    40   0.20   2
(AF442299) Candida glabrata small subunit ribosomal RNA gene...    36   0.23   3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   0.25   17
(AM424821) Vitis vinifera contig VV78X271082.2, whole genome...    34   0.26   3
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    30   0.27   12
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   0.28   15
(CP000107) Ehrlichia canis str. Jake, complete genome.             38   0.28   19
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.29   14
(AE017308) Mycoplasma mobile 163K complete genome.                 38   0.34   20
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   0.35   17
(AX346727) Sequence 1798 from Patent WO0200928.                    36   0.35   4
(AC087319) Homo sapiens 12p BAC RP11-229F13 (Roswell Park Ca...    36   0.35   4
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    34   0.35   14
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   0.36   12
(AC182815) Medicago truncatula chromosome 8 clone mth2-177e2...    36   0.39   8
(AY458633) Uncultured marine bacterium 313 clone EBAC750-11E...    38   0.46   5
(U87145) Toxoplasma gondii chloroplast, complete genome.           32   0.49   8
(AJ307410) Yarrowia lipolytica complete mitochondrial genome.      30   0.56   7
(EU275726) Polysphondylium pallidum strain PN500 mitochondri...    34   0.57   7
(AC145455) Cicer arietinum strain ICC4958 clone cp1-89p20, W...    36   0.58   5
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   0.61   15
(AU037464) Dictyostelium discoideum slug cDNA, clone SSD669.       34   0.62   3
(AU038235) Dictyostelium discoideum slug cDNA, clone SSH452.       34   0.62   3
(AU262930) Dictyostelium discoideum vegetative cDNA clone:VS...    34   0.67   3
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    34   0.68   15
(AL844506) Plasmodium falciparum chromosome  7.                    34   0.70   16
(ER342663) 1092344356875 Global-Ocean-Sampling_GS-34-01-01-1...    44   0.70   2
(BX005316) Zebrafish DNA sequence from clone CH211-287H3.          48   0.71   1
(BX470084) Mouse DNA sequence from clone RP23-239A15 on chro...    48   0.71   1
(AC160124) Mus musculus BAC clone RP23-297P22 from chromosom...    48   0.71   1
(AC159886) Mus musculus BAC clone RP24-397P9 from chromosome...    48   0.71   1
(AM479077) Vitis vinifera contig VV78X034366.12, whole genom...    48   0.71   1
(AM454884) Vitis vinifera contig VV78X053838.3, whole genome...    48   0.71   1
(CR940348) Theileria annulata genomic DNA chromosome 2.            48   0.71   1
(AL662863) Mouse DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.71   1
(AC182140) Bos taurus clone CH240-331E21, WORKING DRAFT SEQU...    48   0.71   1
(AC164264) Bos taurus clone CH240-118M7, WORKING DRAFT SEQUE...    48   0.71   1
(EK226772) 1095460161431 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.71   1
(EJ908374) 1093018524418 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.71   1
(EJ879766) 1093018390114 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.71   1
(DE934186) Macropus eugenii DNA, BAC clone: MEB1-126C17_R, 3...    48   0.71   1

>(AC116305) Dictyostelium discoideum chromosome 2 map 1005175-1418323
              strain AX4, complete sequence.
          Length = 413138

 Score =  662 bits (334), Expect(5) = 0.0
 Identities = 384/409 (93%)
 Strand = Plus / Minus


Query: 662    ttattttanaaaaaggatttaaccaaccnctaccnccttttataattccaaanaacgtaa 721
              |||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||
Sbjct: 282037 ttattttagaaaaaggatttaaccaaccactaccaccttttataattccaaataacgtaa 281978


Query: 722    ttngtatggagattggngcaattcaatcaaaattanaaaaaggatccttaccagaatcag 781
              || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 281977 ttcgtatggagattggcgcaattcaatcaaaattagaaaaaggatccttaccagaatcag 281918


Query: 782    tagaaaacttacaatttaaaaagggattcaaccnaattataactaaagatttattattaa 841
              ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 281917 tagaaaacttacaatttaaaaagggattcaaccaaattataactaaagatttattattaa 281858


Query: 842    ataataataaattgatttcagttgaatttagtgatatattaaaaagaatagatttagatt 901
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281857 ataataataaattgatttcagttgaatttagtgatatattaaaaagaatagatttagatt 281798


Query: 902    cncttccnccatcattaaaanaattaaagtttgnttctaatttttcncacccnaaagata 961
              | ||||| |||||||||||| |||||||||||| |||||||||||| ||||| |||||||
Sbjct: 281797 cacttcctccatcattaaaagaattaaagtttgtttctaatttttcacacccaaaagata 281738


Query: 962    taaaatatgnaacagnacccccaaaatttgttaaagaatttataaacnctggngnccgnc 1021
              ||||||||| ||||| ||||||||||||||||||||||||||||||| |||| | ||| |
Sbjct: 281737 taaaatatgtaacagtacccccaaaatttgttaaagaatttataaactctggtgtccgtc 281678


Query: 1022   ctgaagttatcnatcnatcnttttttaanacattgnaataataattttt 1070
              ||||||||||| ||| ||| |||||||| |||||| |||||||||||||
Sbjct: 281677 ctgaagttatcaatcaatctttttttaatacattgtaataataattttt 281629

 Score =  486 bits (245), Expect(5) = 0.0
 Identities = 245/245 (100%)
 Strand = Plus / Minus


Query: 407    caaatgcaccatcaatttcgaaagatactataccaaaaaataatattcatacactttatt 466
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282604 caaatgcaccatcaatttcgaaagatactataccaaaaaataatattcatacactttatt 282545


Query: 467    tttcatttggatataataaattaattgaacctggtgttattccagagaatattaagatta 526
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282544 tttcatttggatataataaattaattgaacctggtgttattccagagaatattaagatta 282485


Query: 527    ttcattttggtaatatagaaaataaggttttagtagaaggttcaattccaaatactgtag 586
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282484 ttcattttggtaatatagaaaataaggttttagtagaaggttcaattccaaatactgtag 282425


Query: 587    aaacaattcattttcatggtgaatttaaattaaaattagagaaaaacattataccaaata 646
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282424 aaacaattcattttcatggtgaatttaaattaaaattagagaaaaacattataccaaata 282365


Query: 647    atgtt 651
              |||||
Sbjct: 282364 atgtt 282360

 Score =  351 bits (177), Expect(5) = 0.0
 Identities = 177/177 (100%)
 Strand = Plus / Minus


Query: 223    caatatttattatgtaatgaagaaattaaaaatgatactgatatggttttattagcaaag 282
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282788 caatatttattatgtaatgaagaaattaaaaatgatactgatatggttttattagcaaag 282729


Query: 283    aatgttgatactttaaatttaaaaatcccaccagaaacaaagtcaattgcatattttgat 342
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282728 aatgttgatactttaaatttaaaaatcccaccagaaacaaagtcaattgcatattttgat 282669


Query: 343    gataaaataccatttaatggtgaaccaataaaaagtacaaaaatcggaactttaaac 399
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282668 gataaaataccatttaatggtgaaccaataaaaagtacaaaaatcggaactttaaac 282612

 Score =  153 bits (77), Expect(5) = 0.0
 Identities = 77/77 (100%)
 Strand = Plus / Minus


Query: 1      ctaactcaattgagacaaatgggaattagaacaaatgaacaagagataatttcacaattt 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283096 ctaactcaattgagacaaatgggaattagaacaaatgaacaagagataatttcacaattt 283037


Query: 61     ggaaattattatgaagt 77
              |||||||||||||||||
Sbjct: 283036 ggaaattattatgaagt 283020

 Score = 32.2 bits (16), Expect(5) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Minus


Query: 1088   taataaattaataaac 1103
              ||||||||||||||||
Sbjct: 281610 taataaattaataaac 281595

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,262,898,099
Number of extensions: 90256034
Number of successful extensions: 7823482
Number of sequences better than 10.0: 341
Length of query: 1103
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1079
Effective length of database: 97,308,875,965
Effective search space: 104996277166235
Effective search space used: 104996277166235
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08762-1 (Contig-U08762-1Q) /CSM_Contig/Contig-U08762-1Q.Seq.d
         (1103 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso...   444   e-123
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            83   1e-14
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    83   1e-14
(Q5UQL2) RecName: Full=Putative F-box and FNIP repeat-containing...    80   2e-13
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...    78   5e-13
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    77   8e-13
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    76   2e-12
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    74   1e-11
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    72   3e-11
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    72   3e-11
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso...    72   3e-11
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing...    70   1e-10
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom...    67   8e-10
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...    66   2e-09
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...    65   3e-09
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso...    65   3e-09
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso...    64   1e-08
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos...    63   2e-08
AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso...    59   4e-07
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso...    58   5e-07
(Q8T126) RecName: Full=Probable inactive serine/threonine-protei...    56   2e-06
AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom...    56   3e-06
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...    54   1e-05
AC116984_74(AC116984|pid:none) Dictyostelium discoideum chromoso...    53   2e-05
AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos...    53   2e-05
AC116986_27(AC116986|pid:none) Dictyostelium discoideum chromoso...    53   2e-05
AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom...    52   5e-05
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso...    50   1e-04
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso...    49   3e-04
AC115599_48(AC115599|pid:none) Dictyostelium discoideum chromoso...    49   3e-04
(Q54JC0) RecName: Full=Calmodulin-binding protein CmbB; AltName:...    49   4e-04
AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromoso...    48   7e-04
(Q1ZXK1) RecName: Full=FNIP repeat-containing protein DDB_G02773...    47   0.001
AC115682_10(AC115682|pid:none) Dictyostelium discoideum chromoso...    46   0.002
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740...    46   0.003
AC116957_13(AC116957|pid:none) Dictyostelium discoideum chromoso...    45   0.003
AC115604_7(AC115604|pid:none) Dictyostelium discoideum chromosom...    45   0.006
AC116977_30(AC116977|pid:none) Dictyostelium discoideum chromoso...    44   0.008
AC116957_4(AC116957|pid:none) Dictyostelium discoideum chromosom...    43   0.022
AC116957_6(AC116957|pid:none) Dictyostelium discoideum chromosom...    42   0.038
CU179680_253(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    42   0.038
AP008971_953(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,...    41   0.085
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom...    40   0.14
CR382398_75(CR382398|pid:none) Plasmodium falciparum chromosome ...    40   0.19
AL844505_75(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    40   0.19
(Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L...    40   0.19
AE017245_576(AE017245|pid:none) Mycoplasma synoviae 53, complete...    39   0.25
AE014186_296(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.25
AM910996_572(AM910996|pid:none) Plasmodium knowlesi strain H chr...    39   0.32
FM178382_2(FM178382|pid:none) Aliivibrio salmonicida LFI1238 pla...    39   0.42
(Q5UR85) RecName: Full=Putative FNIP repeat-containing protein R...    38   0.55
AC079179_9(AC079179|pid:none) Oryza sativa chromosome 10 clone O...    38   0.72
AF547984_42(AF547984|pid:none) Adoxophyes orana granulovirus, co...    37   0.94
AC117081_26(AC117081|pid:none) Dictyostelium discoideum chromoso...    37   0.94
CP000867_230(CP000867|pid:none) Methanococcus maripaludis C6, co...    37   0.94
CP000745_1662(CP000745|pid:none) Methanococcus maripaludis C7, c...    36   2.1
(Q554M9) RecName: Full=FNIP repeat-containing protein DDB_G02746...    36   2.1
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719...    36   2.1
CP000678_1512(CP000678|pid:none) Methanobrevibacter smithii ATCC...    36   2.1
EF469826_25(EF469826|pid:none) Streptococcus pneumoniae strain A...    36   2.7
AE015450_702(AE015450|pid:none) Mycoplasma gallisepticum strain ...    35   3.6
CP000776_777(CP000776|pid:none) Campylobacter hominis ATCC BAA-3...    35   3.6
(Q49400) RecName: Full=Uncharacterized adenine-specific methylas...    35   3.6
CP000867_229(CP000867|pid:none) Methanococcus maripaludis C6, co...    35   3.6
CP000102_385(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    35   3.6
(B7J0L8) RecName: Full=Flagellar P-ring protein; AltName: Full=B...    35   4.7
AL844506_233(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.7
BA000011_1410(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA...    35   4.7
CP000099_2830(CP000099|pid:none) Methanosarcina barkeri str. Fus...    35   4.7
CP000084_691(CP000084|pid:none) Candidatus Pelagibacter ubique H...    35   4.7
AC117072_27(AC117072|pid:none) Dictyostelium discoideum chromoso...    35   6.1
AM406671_1197(AM406671|pid:none) Lactococcus lactis subsp. cremo...    35   6.1
AL844508_198(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    35   6.1
FN392322_72(FN392322|pid:none) Pichia pastoris GS115 chromosome ...    35   6.1
AE008384_1588(AE008384|pid:none) Methanosarcina mazei strain Goe...    35   6.1
S50210(S50210) surface layer protein B - Methanosarcina mazei  &...    35   6.1
AY225065_1(AY225065|pid:none) Neuwiedia veratrifolia NADH dehydr...    34   7.9
AC116957_86(AC116957|pid:none) Dictyostelium discoideum chromoso...    34   7.9
AL844508_117(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    34   7.9
CP000013_135(CP000013|pid:none) Borrelia garinii PBi, complete g...    34   7.9
CP001357_258(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    34   7.9
AF226280_49(AF226280|pid:none) Campylobacter jejuni 81-176 virul...    34   7.9
AF165818_15(AF165818|pid:none) Guillardia theta nucleomorph chro...    34   7.9
CP001083_2568(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    34   7.9

>AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromosome
           2 map 1005175-1418323 strain AX4, complete sequence.
          Length = 594

 Score =  444 bits (1141), Expect = e-123
 Identities = 226/270 (83%), Positives = 233/270 (86%)
 Frame = +1

Query: 1   LTQLRQMGIRTNEQEIISQFGNYYEVFSKENNLLKNPHFSKCEITKLNEIEILNNPISIE 180
           LTQLRQMGIRTNEQEIISQFGNYYEVFSKENNLLKNPHFSKCEITKLNEIEILNNPISIE
Sbjct: 139 LTQLRQMGIRTNEQEIISQFGNYYEVFSKENNLLKNPHFSKCEITKLNEIEILNNPISIE 198

Query: 181 IKNFEYKEEFLMKKQYLLCNEEIKNDTDMVLLAKNVDTLNLKIPPETKSIAYFDDKIPFN 360
           IKNFEYKEEFLMKKQYLLCNEEIKNDTDMVLLAKNVDTLNLKIPPETKSIAYFDDKIPFN
Sbjct: 199 IKNFEYKEEFLMKKQYLLCNEEIKNDTDMVLLAKNVDTLNLKIPPETKSIAYFDDKIPFN 258

Query: 361 GEPIKSTKIGTLNFFSNAPSISKDTIPKNNIHTLYFSFGYNKLIEPGVIPENIKIIHFGN 540
           GEPIKSTKIGTLNFFSNAPSISKDTIPKNNIHTLYFSFGYNKLIEPGVIPENIKIIHFGN
Sbjct: 259 GEPIKSTKIGTLNFFSNAPSISKDTIPKNNIHTLYFSFGYNKLIEPGVIPENIKIIHFGN 318

Query: 541 IENKVLVEGSIPNTVETIHFHGEFKLKLEKNIIPNNVXXXXILXKGFNQPLPPFIIPXNV 720
           IENKVLVEGSIPNTVETIHFHGEFKLKLEKNIIPNNV
Sbjct: 319 IENKVLVEGSIPNTVETIHFHGEFKLKLEKNIIPNNVK---------------------- 356

Query: 721 IXMEIGAIQSKLXKGSLPESVENLQFKKGF 810
             +    +++ L KGS+PE V ++    GF
Sbjct: 357 -TLHFYDVKNILKKGSIPEFVNSVNLHDGF 385

 Score =  235 bits (600), Expect = 2e-60
 Identities = 130/205 (63%), Positives = 141/205 (68%)
 Frame = +1

Query: 442  KNNIHTLYFSFGYNKLIEPGVIPENIKIIHFGNIENKVLVEGSIPNTVETIHFHGEFKLK 621
            +  + T++F+ GY+  IE   IP+ +K IHF NI NK L++GSIP +VETI
Sbjct: 414  EGKVDTIFFNDGYDHKIEKNHIPKGVKTIHFHNI-NKPLIKGSIPKSVETI--------- 463

Query: 622  LEKNIIPNNVXXXXILXKGFNQPLPPFIIPXNVIXMEIGAIQSKLXKGSLPESVENLQFK 801
                          IL KGFNQPLPPFIIP NVI MEIGAIQSKL KGSLPESVENLQFK
Sbjct: 464  --------------ILEKGFNQPLPPFIIPNNVIRMEIGAIQSKLEKGSLPESVENLQFK 509

Query: 802  KGFNXIITKDLLLNNNKLISVEFSDILKRIXXXXXXXXXXXXXFXSNFSHPKDIKYXTXP 981
            KGFN IITKDLLLNNNKLISVEFSDILKRI             F SNFSHPKDIKY T P
Sbjct: 510  KGFNQIITKDLLLNNNKLISVEFSDILKRIDLDSLPPSLKELKFVSNFSHPKDIKYVTVP 569

Query: 982  PKFVKEFINXGXRPEVIXXSFFXTL 1056
            PKFVKEFIN G RPEVI  SFF TL
Sbjct: 570  PKFVKEFINSGVRPEVINQSFFNTL 594

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,387,977,802
Number of extensions: 26427665
Number of successful extensions: 66393
Number of sequences better than 10.0: 84
Number of HSP's gapped: 66025
Number of HSP's successfully gapped: 178
Length of query: 367
Length of database: 1,040,966,779
Length adjustment: 130
Effective length of query: 237
Effective length of database: 624,409,729
Effective search space: 147985105773
Effective search space used: 147985105773
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.58  gvh: 0.32  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U08762-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0