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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08743-1
Contig ID Contig-U08743-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08743-1 (Contig-U08743-1Q) /CSM_Contig/Contig-U08743-1Q.Seq.d
CACTGTTGGCCTACTGGAAAAAAAAAGATATATTAAAAATCAAATAATTA
TGGGTAAAAATAAAAATTATAATAAAAATCAATTTAAAAAATCAAAAACA
AATAATGATACCACAGTAGCACAACAACAACAAACAATTGAAGAAAAACC
AGATTTTAAAATTGATGGATCAATTTTAGAAGGTGGTGGTCAAATTTTAA
GAAATTCAGTTGCATTAGCATCACTATTTAATAAAGCCATTTCAATTGAA
AAGATTAGGTATAATAGAGATCAACCAGGATTGAAAAATCAACATAAAGC
TGGTATTGATTTAATGTCACGTTTATTTAAAGCTCATTTAACAGGTTGTA
GTGTTGGTTCATGTAAACTTTATTATCAACCAACACAAAAGACAATTCAA
GATGATGGTGTAATTGAAGCTGATACTAAAACAGCTGGTAGTATTTGTTT
GATGATTCAAGTTTCATTACCATGTTTAATCTTTGCACCACATTCCACAA
AGATGGTATTGGGTGGTGGAACAAATTGTGATTTTGCACCAGCTGCAGAC
TATATTCAAAATGTTTTCCTACCAATTGCAACAACTATGGGATTTAAATG
TGAGATGAGTATTGATAAAAGAGGGT----------TGTCACATTGACAA
CCCAAACCACTCACACAACCACTCTCGCCAATCACCATAGTGAATAAGGG
TGAGGTGAATAGAATTGTAATCAAGTCCTATTTCACGTCGCCTAGAATAT
CACCATTGGTAGCAGAGAGGATGAATAACACTGCAAAGAAATTAATAAAA
AAGGATTTTAAAAAGGTGGATGTTGAAACAGAGTTAATCGATGTGAGTAA
ATTTAGTTTTGGTGATGGTACATTCATTGAAATTAGGGCATACACCGACC
AAGGTTGTATATTTGGTGCAACTGGAAATGGTGCAATTGGTGTACCTGCT
GAAAAAGTCGCAGAAGATGCTGCAAATTCTTTACTCAAAGATTTGCAAGA
TGGTGGTTGTATGGATGAATACCTTCAAGATCAATTAATCATTTTCATGG
CTTTAGCAAAAGGTAAAAGTCAAATTAAAACTGGTCCAATCTCATTACAT
ACTCAAACTTCAATTCATATAACATCTTTAATGACTGGTGCTATTTTTAC
AATTACACCATTAACTAATAATACTCAATCTGGTGAAGAAACAAATTTAA
TAACTTGTGAAGGTATTAGTTATTTTCCATCTGATTTAAATAATAATAAT
AATAATAGTAATAGTAATACTACTACTACTACAACTACCACTACAATTTC
AACTACAACTATTATAACCAAAATAGTAAGAAAAATAAAATANAAAATTC
ATAACCGT
Gap gap included
Contig length 1348
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6252229
End point 6250873
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 6
Link to clone list U08743
List of clone(s) 

est1=AFI290F,1,548
est2=VFI760F,18,611
est3=AFF494F,30,627
est4=AFI290Z,628,1334
est5=VFI760Z,647,1350
est6=AFF494Z,651,1334
Translated Amino Acid sequence 
TVGLLEKKRYIKNQIIMGKNKNYNKNQFKKSKTNNDTTVAQQQQTIEEKPDFKIDGSILE
GGGQILRNSVALASLFNKAISIEKIRYNRDQPGLKNQHKAGIDLMSRLFKAHLTGCSVGS
CKLYYQPTQKTIQDDGVIEADTKTAGSICLMIQVSLPCLIFAPHSTKMVLGGGTNCDFAP
AADYIQNVFLPIATTMGFKCEMSIDKRG---

---VTLTTQTTHTTTLANHHSE*g*ge*ncnqvlfhva*nitigsrede*hckeinkkgf
*kggc*nrvnrce*i*fw*wyih*n*gihrprlyiwcnwkwcnwctc*ksrrrcckfftq
rfarwwlyg*ipsrsinhfhgfskr*ksn*nwsnlitysnfnsynifndwcyfynytin*
*ysiw*rnkfnnl*ry*lfsi*fk*********yyyyynyhynfnynyynqnskknkixn
s*p
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgkkkiy*ksnnyg*k*kl**ksi*kiknk**yhssttttnn*rktrf*n*winfr
rwwsnfkkfscisiti**shfn*kd*v**rstriekst*swy*fnvtfi*ssfnrl*cwf
m*tllstntkdnsr*wcn*s*y*nsw*ylfddssfitmfnlcttfhkdgigwwnkl*fct
scrlyskcfptncnnygi*m*dey**kr---

---chidnpnhshnhsrqsp**irvr*iel*sspisrrleyhhw*qrg*itlqrn**kri
lkrwmlkqs*sm*vnlvlvmvhslklghtptkvvylvqlemvqlvyllkksqkmlqilys
kickmvvvwmntfkin*sfswl*qkvkvklklvqshyilklqfi*hl**lvlflqlhh*l
iilnlvkkqi**lvkvlvifhli*iiiiiivivillllqlplqfqlqll*pk**ek*nxk
fit

Frame B:
TVGLLEKKRYIKNQIIMGKNKNYNKNQFKKSKTNNDTTVAQQQQTIEEKPDFKIDGSILE
GGGQILRNSVALASLFNKAISIEKIRYNRDQPGLKNQHKAGIDLMSRLFKAHLTGCSVGS
CKLYYQPTQKTIQDDGVIEADTKTAGSICLMIQVSLPCLIFAPHSTKMVLGGGTNCDFAP
AADYIQNVFLPIATTMGFKCEMSIDKRG---

---VTLTTQTTHTTTLANHHSE*g*ge*ncnqvlfhva*nitigsrede*hckeinkkgf
*kggc*nrvnrce*i*fw*wyih*n*gihrprlyiwcnwkwcnwctc*ksrrrcckfftq
rfarwwlyg*ipsrsinhfhgfskr*ksn*nwsnlitysnfnsynifndwcyfynytin*
*ysiw*rnkfnnl*ry*lfsi*fk*********yyyyynyhynfnynyynqnskknkixn
s*p

Frame C:
llaywkkkdilkik*lwvkikiiikinlknqkqimipq*hnnnkqlkknqilklmdqf*k
vvvkf*eiqlh*hhylikpfqlkrlgiieinqd*kiniklvli*chvylkli*qvvvlvh
vnfiinqhkrqfkmmv*lklilkqlvvfv**fkfhyhv*slhhipqrwywvveqivilhq
lqtifkmfsyqlqqlwdlnvr*vlikeg---

---sh*qpkpltqplspitivnkgevnriviksyftsprisplvaermnntakklikkdf
kkvdvetelidvskfsfgdgtfieiraytdqgcifgatgngaigvpaekvaedaansllk
dlqdggcmdeylqdqliifmalakgksqiktgpislhtqtsihitslmtgaiftitpltn
ntqsgeetnlitcegisyfpsdlnnnnnnsnsntttttttttistttiitkivrkikxki
hnr
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08743-1 (Contig-U08743-1Q)
/CSM_Contig/Contig-U08743-1Q.Seq.d
         (1358 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08743-1 (Contig-U08743-1Q) /CSM_Contig/Conti...  2187  0.0
Contig-U01974-1 (Contig-U01974-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12817-1 (Contig-U12817-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11922-1 (Contig-U11922-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11545-1 (Contig-U11545-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U11244-1 (Contig-U11244-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U10989-1 (Contig-U10989-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U05244-1 (Contig-U05244-1Q) /CSM_Contig/Conti...    38  0.024
Contig-U13854-1 (Contig-U13854-1Q) /CSM_Contig/Conti...    36  0.096
Contig-U12082-1 (Contig-U12082-1Q) /CSM_Contig/Conti...    32  1.5

>Contig-U08743-1 (Contig-U08743-1Q) /CSM_Contig/Contig-U08743-1Q.Seq.d
          Length = 1358

 Score = 2187 bits (1103), Expect = 0.0
 Identities = 1133/1133 (100%)
 Strand = Plus / Plus

                                                                        
Query: 104  aatgataccacagtagcacaacaacaacaaacaattgaagaaaaaccagattttaaaatt 163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104  aatgataccacagtagcacaacaacaacaaacaattgaagaaaaaccagattttaaaatt 163

                                                                        
Query: 164  gatggatcaattttagaaggtggtggtcaaattttaagaaattcagttgcattagcatca 223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164  gatggatcaattttagaaggtggtggtcaaattttaagaaattcagttgcattagcatca 223

                                                                        
Query: 224  ctatttaataaagccatttcaattgaaaagattaggtataatagagatcaaccaggattg 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224  ctatttaataaagccatttcaattgaaaagattaggtataatagagatcaaccaggattg 283

                                                                        
Query: 284  aaaaatcaacataaagctggtattgatttaatgtcacgtttatttaaagctcatttaaca 343
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284  aaaaatcaacataaagctggtattgatttaatgtcacgtttatttaaagctcatttaaca 343

                                                                        
Query: 344  ggttgtagtgttggttcatgtaaactttattatcaaccaacacaaaagacaattcaagat 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344  ggttgtagtgttggttcatgtaaactttattatcaaccaacacaaaagacaattcaagat 403

                                                                        
Query: 404  gatggtgtaattgaagctgatactaaaacagctggtagtatttgtttgatgattcaagtt 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404  gatggtgtaattgaagctgatactaaaacagctggtagtatttgtttgatgattcaagtt 463

                                                                        
Query: 464  tcattaccatgtttaatctttgcaccacattccacaaagatggtattgggtggtggaaca 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464  tcattaccatgtttaatctttgcaccacattccacaaagatggtattgggtggtggaaca 523

                                                                        
Query: 524  aattgtgattttgcaccagctgcagactatattcaaaatgttttcctaccaattgcaaca 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524  aattgtgattttgcaccagctgcagactatattcaaaatgttttcctaccaattgcaaca 583

                                                                        
Query: 584  actatgggatttaaatgtgagatgagtattgataaaagagggtnnnnnnnnnntgtcaca 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584  actatgggatttaaatgtgagatgagtattgataaaagagggtnnnnnnnnnntgtcaca 643

                                                                        
Query: 644  ttgacaacccaaaccactcacacaaccactctcgccaatcaccatagtgaataagggtga 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644  ttgacaacccaaaccactcacacaaccactctcgccaatcaccatagtgaataagggtga 703

                                                                        
Query: 704  ggtgaatagaattgtaatcaagtcctatttcacgtcgcctagaatatcaccattggtagc 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  ggtgaatagaattgtaatcaagtcctatttcacgtcgcctagaatatcaccattggtagc 763

                                                                        
Query: 764  agagaggatgaataacactgcaaagaaattaataaaaaaggattttaaaaaggtggatgt 823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764  agagaggatgaataacactgcaaagaaattaataaaaaaggattttaaaaaggtggatgt 823

                                                                        
Query: 824  tgaaacagagttaatcgatgtgagtaaatttagttttggtgatggtacattcattgaaat 883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824  tgaaacagagttaatcgatgtgagtaaatttagttttggtgatggtacattcattgaaat 883

                                                                        
Query: 884  tagggcatacaccgaccaaggttgtatatttggtgcaactggaaatggtgcaattggtgt 943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884  tagggcatacaccgaccaaggttgtatatttggtgcaactggaaatggtgcaattggtgt 943

                                                                        
Query: 944  acctgctgaaaaagtcgcagaagatgctgcaaattctttactcaaagatttgcaagatgg 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944  acctgctgaaaaagtcgcagaagatgctgcaaattctttactcaaagatttgcaagatgg 1003

                                                                        
Query: 1004 tggttgtatggatgaataccttcaagatcaattaatcattttcatggctttagcaaaagg 1063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 tggttgtatggatgaataccttcaagatcaattaatcattttcatggctttagcaaaagg 1063

                                                                        
Query: 1064 taaaagtcaaattaaaactggtccaatctcattacatactcaaacttcaattcatataac 1123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1064 taaaagtcaaattaaaactggtccaatctcattacatactcaaacttcaattcatataac 1123

                                                                        
Query: 1124 atctttaatgactggtgctatttttacaattacaccattaactaataatactcaatctgg 1183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1124 atctttaatgactggtgctatttttacaattacaccattaactaataatactcaatctgg 1183

                                                                 
Query: 1184 tgaagaaacaaatttaataacttgtgaaggtattagttattttccatctgatt 1236
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 tgaagaaacaaatttaataacttgtgaaggtattagttattttccatctgatt 1236


 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                           
Query: 1312 ttataaccaaaatagtaagaaaaataaaatanaaaattcataaccgt 1358
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1312 ttataaccaaaatagtaagaaaaataaaatanaaaattcataaccgt 1358


 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 1  cactgttggcctactgg 17
          |||||||||||||||||
Sbjct: 1  cactgttggcctactgg 17


>Contig-U01974-1 (Contig-U01974-1Q) /CSM_Contig/Contig-U01974-1Q.Seq.d
          Length = 1306

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 1325 agtaagaaaaataaaatanaaaa 1347
            |||||||||||||||||| ||||
Sbjct: 1225 agtaagaaaaataaaataaaaaa 1247


 Score = 30.2 bits (15), Expect = 5.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 120 cacaacaacaacaaa 134
           |||||||||||||||
Sbjct: 31  cacaacaacaacaaa 45


>Contig-U12817-1 (Contig-U12817-1Q) /CSM_Contig/Contig-U12817-1Q.Seq.d
          Length = 2530

 Score = 38.2 bits (19), Expect = 0.024
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 121  acaacaacaacaaacaatt 139
            |||||||||||||||||||
Sbjct: 1563 acaacaacaacaaacaatt 1581


 Score = 34.2 bits (17), Expect = 0.38
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 1  cactgttggcctactgg 17
          |||||||||||||||||
Sbjct: 1  cactgttggcctactgg 17


 Score = 30.2 bits (15), Expect = 5.9
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                              
Query: 1331 aaaaataaaatanaaaat 1348
            |||||||||||| |||||
Sbjct: 1644 aaaaataaaataaaaaat 1627


 Score = 30.2 bits (15), Expect = 5.9
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                              
Query: 1331 aaaaataaaatanaaaat 1348
            |||||||||||| |||||
Sbjct: 1656 aaaaataaaataaaaaat 1639


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,736
Number of Sequences: 6905
Number of extensions: 25736
Number of successful extensions: 6819
Number of sequences better than 10.0: 705
length of query: 1358
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1342
effective length of database: 5,564,391
effective search space: 7467412722
effective search space used: 7467412722
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA 
Query= Contig-U08743-1 (Contig-U08743-1Q) /CSM_Contig/Contig-U08743-1Q.Seq.d
         (1358 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ343969) Dictyostelium discoideum cDNA clone:dda17c24, 3' ...  1189   0.0    1
(AF020279) Dictyostelium discoideum R2037 gene, complete cds.    1154   0.0    3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...  1154   0.0    3
(BJ432404) Dictyostelium discoideum cDNA clone:ddv18h15, 3' ...  1152   0.0    1
(BJ340163) Dictyostelium discoideum cDNA clone:dda11l24, 3' ...  1128   0.0    1
(BJ323712) Dictyostelium discoideum cDNA clone:dda11l24, 5' ...   938   0.0    1
(BJ414270) Dictyostelium discoideum cDNA clone:ddv18h15, 5' ...   908   0.0    1
(BJ326723) Dictyostelium discoideum cDNA clone:dda17c24, 5' ...   791   0.0    2
(FG764070) G1146P324FM6.T0 Anolis carolinensis pooled normal...    54   0.001  2
(DB775134) Apis mellifera head cDNA, RIKEN full-length enric...    56   0.004  1
(FG779811) G1147P347FH16.T0 Anolis carolinensis pooled norma...    54   0.014  1
(FG766620) G1147P341RG4.T0 Anolis carolinensis pooled normal...    54   0.014  1
(FG766572) G1147P341FG4.T0 Anolis carolinensis pooled normal...    54   0.014  1
(FG764118) G1146P324RM6.T0 Anolis carolinensis pooled normal...    54   0.014  1
(FG722743) G1144P319FK5.T0 Anolis carolinensis pooled normal...    54   0.014  1
(FG693874) G1144P349RH16.T0 Anolis carolinensis pooled norma...    54   0.014  1
(FG684491) G1143P329FO19.T0 Anolis carolinensis pooled norma...    54   0.014  1
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    50   0.22   1
(EJ059644) 1095456056297 Global-Ocean-Sampling_GS-26-01-01-1...    50   0.22   1
(AA550636) 1825m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc...    50   0.22   1
(EX643462) 256648412 Pea aphid whole body normalized full le...    50   0.22   1
(AC068602) Genomic sequence for Arabidopsis thaliana BAC F14...    48   0.88   1
(AC169435) Bos taurus clone CH240-203H2, WORKING DRAFT SEQUE...    48   0.88   1
(AC025813) Arabidopsis thaliana chromosome I clone F15H4, **...    48   0.88   1
(CC143934) NDL.57J17.SP6 Notre Dame Liverpool Aedes aegypti ...    48   0.88   1
(BZ905671) CH240_27N2.TJ CHORI-240 Bos taurus genomic clone ...    48   0.88   1
(EY371131) CAXA13282.rev CAXA Helobdella robusta Subtracted ...    48   0.88   1
(FC578267) CAXP13316.fwd CAXP Lottia gigantea from head, foo...    42   0.96   2
(CJ440576) Macaca fascicularis mRNA, clone: QccE-17903, 5' e...    38   1.0    2
(CJ491825) Macaca fascicularis mRNA, clone: QtsA-19776, 5' e...    38   1.1    2
(AJ420281) Barbus intermedius partial Bain-ZE*0401 gene for ...    36   1.5    3
(AC176494) Strongylocentrotus purpuratus clone R3-3072E15, W...    46   1.6    7
(EK113781) 1092963156251 Global-Ocean-Sampling_GS-31-01-01-1...    40   1.8    3
(AC225454) Medicago truncatula clone mth2-15c10, WORKING DRA...    44   2.4    3
(AL929428) Zebrafish DNA sequence from clone CH211-167I23 in...    36   2.8    4
(CT025892) Zebrafish DNA sequence from clone DKEY-26I16 in l...    46   3.5    1
(AL714027) Mouse DNA sequence from clone RP23-96E23 on chrom...    46   3.5    1
(AC186137) Medicago truncatula chromosome 2 BAC clone mth2-7...    46   3.5    1
(AC079679) Arabidopsis thaliana chromosome 1 BAC T6B12 genom...    46   3.5    1
(CU856178) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   3.5    1
(CT025879) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   3.5    1
(AC219668) Bos taurus clone CH240-326I12, WORKING DRAFT SEQU...    46   3.5    1
(AC201678) Strongylocentrotus purpuratus clone R3-1006L14, W...    46   3.5    1
(AC168398) Strongylocentrotus purpuratus clone R3-4002K7, WO...    46   3.5    1
(AC168395) Strongylocentrotus purpuratus clone R3-4002M13, W...    46   3.5    1
(FI148724) SGS1403 Sugarcane cv. Co7201 size fractionated ge...    46   3.5    1
(ET298018) S0263I19_T7 CHORI-214 Salmo salar genomic clone S...    46   3.5    1
(CR349226) mte1-83P15RM1 BAC end, cultivar Jemalong A17 of M...    46   3.5    1
(CG942934) MBEEL77TRB mth2 Medicago truncatula genomic clone...    46   3.5    1
(CG931717) MBEDE71TFC mth2 Medicago truncatula genomic clone...    46   3.5    1
(BZ289720) SALK_023119.40.55.x Arabidopsis thaliana TDNA ins...    46   3.5    1
(BJ343749) Dictyostelium discoideum cDNA clone:dda17e05, 3' ...    46   3.5    1
(EY595858) CAWU3287.fwd CAWU Capitella sp. I ECS-2004 Primar...    46   3.5    1
(FC643031) CAXU6338.fwd CAXU Lottia gigantea from female gon...    42   3.7    2
(U40950) Caenorhabditis elegans cosmid DL2, complete sequence.     40   5.3    2
(AE002147) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    42   7.3    3
(AM463190) Vitis vinifera contig VV78X099380.6, whole genome...    32   7.7    2
(EA131550) Sequence 10 from patent US 7220574.                     44   8.4    2
(AX300904) Sequence 10 from Patent WO0185989.                      44   8.4    2
(ED803817) MG__Bb0061J10f MG__Bb Mimulus guttatus genomic, g...    34   8.5    2
(ET230089) S0235I22_T7 CHORI-214 Salmo salar genomic clone S...    36   9.6    3

>(BJ343969) Dictyostelium discoideum cDNA clone:dda17c24, 3' end,
            single read.
          Length = 708

 Score = 1189 bits (600), Expect = 0.0
 Identities = 600/600 (100%)
 Strand = Plus / Minus


Query: 637  tgtcacattgacaacccaaaccactcacacaaccactctcgccaatcaccatagtgaata 696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  tgtcacattgacaacccaaaccactcacacaaccactctcgccaatcaccatagtgaata 649


Query: 697  agggtgaggtgaatagaattgtaatcaagtcctatttcacgtcgcctagaatatcaccat 756
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648  agggtgaggtgaatagaattgtaatcaagtcctatttcacgtcgcctagaatatcaccat 589


Query: 757  tggtagcagagaggatgaataacactgcaaagaaattaataaaaaaggattttaaaaagg 816
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588  tggtagcagagaggatgaataacactgcaaagaaattaataaaaaaggattttaaaaagg 529


Query: 817  tggatgttgaaacagagttaatcgatgtgagtaaatttagttttggtgatggtacattca 876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528  tggatgttgaaacagagttaatcgatgtgagtaaatttagttttggtgatggtacattca 469


Query: 877  ttgaaattagggcatacaccgaccaaggttgtatatttggtgcaactggaaatggtgcaa 936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468  ttgaaattagggcatacaccgaccaaggttgtatatttggtgcaactggaaatggtgcaa 409


Query: 937  ttggtgtacctgctgaaaaagtcgcagaagatgctgcaaattctttactcaaagatttgc 996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408  ttggtgtacctgctgaaaaagtcgcagaagatgctgcaaattctttactcaaagatttgc 349


Query: 997  aagatggtggttgtatggatgaataccttcaagatcaattaatcattttcatggctttag 1056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348  aagatggtggttgtatggatgaataccttcaagatcaattaatcattttcatggctttag 289


Query: 1057 caaaaggtaaaagtcaaattaaaactggtccaatctcattacatactcaaacttcaattc 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288  caaaaggtaaaagtcaaattaaaactggtccaatctcattacatactcaaacttcaattc 229


Query: 1117 atataacatctttaatgactggtgctatttttacaattacaccattaactaataatactc 1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228  atataacatctttaatgactggtgctatttttacaattacaccattaactaataatactc 169


Query: 1177 aatctggtgaagaaacaaatttaataacttgtgaaggtattagttattttccatctgatt 1236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168  aatctggtgaagaaacaaatttaataacttgtgaaggtattagttattttccatctgatt 109

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,417,260,008
Number of extensions: 85893810
Number of successful extensions: 6989240
Number of sequences better than 10.0: 62
Length of query: 1358
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1334
Effective length of database: 97,308,875,965
Effective search space: 129810040537310
Effective search space used: 129810040537310
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08743-1 (Contig-U08743-1Q) /CSM_Contig/Contig-U08743-1Q.Seq.d
         (1358 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O15746) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   361   0.0
BC079374_1(BC079374|pid:none) Rattus norvegicus RNA terminal pho...   139   6e-62
BC016519_1(BC016519|pid:none) Mus musculus RNA terminal phosphat...   138   1e-61
AK152129_1(AK152129|pid:none) Mus musculus bone marrow macrophag...   138   1e-60
BC090403_1(BC090403|pid:none) Mus musculus RNA terminal phosphat...   138   2e-60
(Q9D7H3) RecName: Full=RNA 3'-terminal phosphate cyclase;       ...   138   3e-60
(Q2HJ88) RecName: Full=RNA 3'-terminal phosphate cyclase;       ...   134   3e-60
AK151108_1(AK151108|pid:none) Mus musculus bone marrow macrophag...   138   7e-60
(Q4R3J0) RecName: Full=RNA 3'-terminal phosphate cyclase;       ...   137   9e-60
(O00442) RecName: Full=RNA 3'-terminal phosphate cyclase;       ...   135   4e-59
BC160496_1(BC160496|pid:none) Xenopus tropicalis hypothetical pr...   127   1e-57
AL445928_11(AL445928|pid:none) Human DNA sequence from clone RP1...   126   2e-56
BC012604_1(BC012604|pid:none) Homo sapiens RNA terminal phosphat...   125   6e-56
FN317092_1(FN317092|pid:none) Schistosoma japonicum isolate Anhu...   113   5e-42
(B1YDJ1) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   117   6e-40
CP000660_2139(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135...   115   3e-39
(O77264) RecName: Full=RNA 3'-terminal phosphate cyclase;       ...   115   6e-39
CP000505_217(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...   104   4e-35
BA000001_1574(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ...   108   8e-35
(O59198) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   108   8e-35
(A2BN21) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   104   2e-33
(B1L6E9) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   103   2e-32
AY714845_9(AY714845|pid:none) Uncultured archaeon GZfos27B6 clon...    98   1e-31
(O27937) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    95   2e-30
AK299793_1(AK299793|pid:none) Homo sapiens cDNA FLJ54857 complet...   133   2e-29
(Q8TZC9) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    96   2e-29
CP000743_1441(CP000743|pid:none) Methanococcus aeolicus Nankai-3...    99   5e-28
CP000698_1642(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    91   1e-27
CP000860_1085(CP000860|pid:none) Candidatus Desulforudis audaxvi...    81   4e-26
(Q3M6L1) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    90   6e-25
CP000113_4851(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   100   6e-25
BT045525_1(BT045525|pid:none) Salmo salar clone ssal-rgf-524-072...   115   3e-24
CP000609_945(CP000609|pid:none) Methanococcus maripaludis C5, co...   115   4e-24
(Q12V70) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   113   1e-23
(O28837) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   113   2e-23
CP000867_236(CP000867|pid:none) Methanococcus maripaludis C6, co...   111   5e-23
(Q974U1) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   110   2e-22
CP000745_1657(CP000745|pid:none) Methanococcus maripaludis C7, c...   109   2e-22
FN357335_29(FN357335|pid:none) Schistosoma mansoni genome sequen...   108   4e-22
(Q5JIQ0) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   108   6e-22
(Q46DV9) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   105   3e-21
(Q9YES0) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   103   1e-20
(B6YSJ5) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   103   1e-20
H72747(H72747)probable RNA 3'-terminal phosphate cyclase APE0511...   103   2e-20
CP001338_2564(CP001338|pid:none) Candidatus Methanosphaerula pal...   102   4e-20
CP000521_2518(CP000521|pid:none) Acinetobacter baumannii ATCC 17...   101   7e-20
CP000477_3(CP000477|pid:none) Methanosaeta thermophila PT, compl...   101   7e-20
(A0B532) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   101   7e-20
CP001404_2546(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51...   100   9e-20
(Q1IS76) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   100   2e-19
CP001400_233(CP001400|pid:none) Sulfolobus islandicus M.14.25, c...   100   2e-19
(Q97W04) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   100   2e-19
(Q4JB78) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...   100   2e-19
CP000562_273(CP000562|pid:none) Methanoculleus marisnigri JR1, c...    98   8e-19
(A3DN24) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    97   1e-18
CP000769_2111(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c...    96   2e-18
BX294149_132(BX294149|pid:none) Rhodopirellula baltica SH 1 comp...    95   5e-18
(O66884) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    94   9e-18
CP000251_1671(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    94   9e-18
CP000113_3705(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    71   1e-17
CP000155_162(CP000155|pid:none) Hahella chejuensis KCTC 2396, co...    93   3e-17
CP001359_2246(CP001359|pid:none) Anaeromyxobacter dehalogenans 2...    92   3e-17
(A4XRJ0) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    89   4e-16
CP000884_679(CP000884|pid:none) Delftia acidovorans SPH-1, compl...    88   8e-16
(A8A5M8) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    87   1e-15
(A8MAV7) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    87   1e-15
(A7ZSU9) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    87   2e-15
(B7M2I0) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    87   2e-15
FM180568_3664(FM180568|pid:none) Escherichia coli 0127:H6 E2348/...    87   2e-15
CP000970_3550(CP000970|pid:none) Escherichia coli SMS-3-5, compl...    86   2e-15
CP000036_3163(CP000036|pid:none) Shigella boydii Sb227, complete...    86   3e-15
AY659161_1(AY659161|pid:none) Synthetic construct Peudomonas aer...    86   3e-15
(Q31VL3) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    86   3e-15
(B7V0C8) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    86   3e-15
CP000034_3386(CP000034|pid:none) Shigella dysenteriae Sd197, com...    86   4e-15
CU651637_3293(CU651637|pid:none) Escherichia coli LF82 chromosom...    85   5e-15
CU928145_3738(CU928145|pid:none) Escherichia coli 55989 chromoso...    85   5e-15
CU928162_3973(CU928162|pid:none) Escherichia coli ED1a chromosom...    85   5e-15
(B2U3M8) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    85   7e-15
(B1X765) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    85   7e-15
(B5R378) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    84   9e-15
AE014075_4104(AE014075|pid:none) Escherichia coli CFT073, comple...    84   9e-15
(B7LSC2) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    84   1e-14
(B5F8N4) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    84   1e-14
CP000857_3475(CP000857|pid:none) Salmonella enterica subsp. ente...    84   1e-14
(B4TKU5) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    84   1e-14
BA000007_4263(BA000007|pid:none) Escherichia coli O157:H7 str. S...    83   2e-14
(Q3YWK6) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    83   2e-14
(B5YTX2) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    83   2e-14
CU914168_255(CU914168|pid:none) Ralstonia solanacearum strain IP...    82   3e-14
CU633899_38(CU633899|pid:none) Podospora anserina genomic DNA ch...    82   3e-14
CU861906_220(CU861906|pid:none) Ralstonia solanacearum strain Mo...    82   6e-14
AP007164_580(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    81   8e-14
BT077205_1(BT077205|pid:none) Caligus rogercresseyi clone crog-e...    57   9e-14
CP001339_1670(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ...    80   1e-13
(B0R414) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    80   1e-13
AE004437_566(AE004437|pid:none) Halobacterium sp. NRC-1, complet...    80   1e-13
AM920437_1520(AM920437|pid:none) Penicillium chrysogenum Wiscons...    80   2e-13
(Q09870) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    57   6e-12
(Q54S38) RecName: Full=Probable RNA 3'-terminal phosphate cyclas...    59   2e-11
CP001576_484(CP001576|pid:none) Micromonas sp. RCC299 chromosome...    69   3e-10
BT080620_1(BT080620|pid:none) Caligus clemensi clone ccle-evs-50...    50   3e-10
G65137(G65137) hypothetical 15.4 kD protein in malT-glpR interge...    66   3e-09
CP000316_1455(CP000316|pid:none) Polaromonas sp. JS666, complete...    64   2e-08
AE017220_3449(AE017220|pid:none) Salmonella enterica subsp. ente...    62   4e-08
CP000529_493(CP000529|pid:none) Polaromonas naphthalenivorans CJ...    60   2e-07
CU928175_298(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    44   2e-07
AJ276894_1(AJ276894|pid:none) Homo sapiens mRNA for RNA 3'-termi...    58   7e-07
(Q9Y2P8) RecName: Full=RNA 3'-terminal phosphate cyclase-like pr...    58   7e-07
(Q9JJT0) RecName: Full=RNA 3'-terminal phosphate cyclase-like pr...    57   2e-06
AK168153_1(AK168153|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK...    57   2e-06
CS072285_1(CS072285|pid:none) Sequence 33 from Patent WO20010424...    55   4e-06
(Q2KHX8) RecName: Full=RNA 3'-terminal phosphate cyclase-like pr...    55   4e-06
CP000266_3180(CP000266|pid:none) Shigella flexneri 5 str. 8401, ...    55   6e-06
BT048377_1(BT048377|pid:none) Salmo salar clone ssal-rgb2-565-09...    53   2e-05
BC110759_1(BC110759|pid:none) Xenopus laevis hypothetical protei...    51   8e-05
Y11652_1(Y11652|pid:none) H.sapiens gene encoding phosphate cycl...    51   1e-04
BT079423_1(BT079423|pid:none) Esox lucius clone eluc-evq-516-294...    51   1e-04
CR548612_99(CR548612|pid:none) Paramecium tetraurelia macronucle...    50   1e-04
FN392321_273(FN392321|pid:none) Pichia pastoris GS115 chromosome...    43   0.023
BT041560_1(BT041560|pid:none) Zea mays full-length cDNA clone ZM...    38   0.96
CR382123_255(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    36   3.6
AM494971_161(AM494971|pid:none) Leishmania braziliensis chromoso...    35   6.2
(Q08096) RecName: Full=RNA 3'-terminal phosphate cyclase-like pr...    35   8.1

>(O15746) RecName: Full=Probable RNA 3'-terminal phosphate cyclase;
                  Short=RNA-3'-phosphate cyclase;          Short=RNA
            cyclase;          EC=6.5.1.4;
            &AC116979_81(AC116979|pid:none)
            &AF020279_1(AF020279|pid:none)
          Length = 433

 Score =  361 bits (927), Expect(2) = 0.0
 Identities = 184/195 (94%), Positives = 185/195 (94%)
 Frame = +3

Query: 654  KPLTQPLSPITIVNKGEVNRIVIKSYFTSPRISPLVAERMNNTAXXXXXXXXXXVDVETE 833
            +PLTQPLSPITIVNKGEVNRIVIKSYFTSPRISPLVAERMNNTA          VDVETE
Sbjct: 206  QPLTQPLSPITIVNKGEVNRIVIKSYFTSPRISPLVAERMNNTAKKLIKKDFKKVDVETE 265

Query: 834  LIDVSKFSFGDGTFIEIRAYTDQGCIFGATGNGAIGVPAEKVAEDAANSLLKDLQDGGCM 1013
            LIDVSKFSFGDGTFIEIRAYTDQGCIFGATGNGAIGVPAEKVAEDAANSLLKDLQDGGCM
Sbjct: 266  LIDVSKFSFGDGTFIEIRAYTDQGCIFGATGNGAIGVPAEKVAEDAANSLLKDLQDGGCM 325

Query: 1014 DEYLQDQLIIFMALAKGKSQIKTGPISLHTQTSIHITSLMTGAIFTITPLTNNTQSGEET 1193
            DEYLQDQLIIFMALAKGKSQIKTGPISLHTQTSIHITSLMTGAIFTITPLTNNTQSGEET
Sbjct: 326  DEYLQDQLIIFMALAKGKSQIKTGPISLHTQTSIHITSLMTGAIFTITPLTNNTQSGEET 385

Query: 1194 NLITCEGISYFPSDL 1238
            NLITCEGISYFPSDL
Sbjct: 386  NLITCEGISYFPSDL 400

 Score =  357 bits (915), Expect(2) = 0.0
 Identities = 176/176 (100%), Positives = 176/176 (100%)
 Frame = +2

Query: 98  TNNDTTVAQQQQTIEEKPDFKIDGSILEGGGQILRNSVALASLFNKAISIEKIRYNRDQP 277
           TNNDTTVAQQQQTIEEKPDFKIDGSILEGGGQILRNSVALASLFNKAISIEKIRYNRDQP
Sbjct: 17  TNNDTTVAQQQQTIEEKPDFKIDGSILEGGGQILRNSVALASLFNKAISIEKIRYNRDQP 76

Query: 278 GLKNQHKAGIDLMSRLFKAHLTGCSVGSCKLYYQPTQKTIQDDGVIEADTKTAGSICLMI 457
           GLKNQHKAGIDLMSRLFKAHLTGCSVGSCKLYYQPTQKTIQDDGVIEADTKTAGSICLMI
Sbjct: 77  GLKNQHKAGIDLMSRLFKAHLTGCSVGSCKLYYQPTQKTIQDDGVIEADTKTAGSICLMI 136

Query: 458 QVSLPCLIFAPHSTKMVLGGGTNCDFAPAADYIQNVFLPIATTMGFKCEMSIDKRG 625
           QVSLPCLIFAPHSTKMVLGGGTNCDFAPAADYIQNVFLPIATTMGFKCEMSIDKRG
Sbjct: 137 QVSLPCLIFAPHSTKMVLGGGTNCDFAPAADYIQNVFLPIATTMGFKCEMSIDKRG 192

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,816,193,272
Number of extensions: 33850912
Number of successful extensions: 80946
Number of sequences better than 10.0: 124
Number of HSP's gapped: 80767
Number of HSP's successfully gapped: 195
Length of query: 452
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 320
Effective length of database: 618,001,159
Effective search space: 197760370880
Effective search space used: 197760370880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.70  gvh: 0.11  alm: 0.29  top: 0.70  tms: 0.07  mit: 0.23  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system

>> prediction for Contig-U08743-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0