Contig-U08738-1 |
Contig ID |
Contig-U08738-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
944 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
5818209 |
End point |
5817264 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U08738 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.13 |
Homology vs DNA |
Query= Contig-U08738-1 (Contig-U08738-1Q) /CSM_Contig/Contig-U08738-1Q.Seq.d (954 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 688 0.0 6 (BJ340131) Dictyostelium discoideum cDNA clone:dda11d19, 3' ... 866 0.0 2 (BJ323684) Dictyostelium discoideum cDNA clone:dda11d19, 5' ... 264 2e-73 2 (AC068359) Homo sapiens chromosome 8, clone RP11-468C1, comp... 48 7e-04 4 (AX282717) Sequence 1534 from Patent WO0164876. 48 0.008 5 (AX282125) Sequence 1534 from Patent WO0164877. 48 0.008 5 (BK000383) TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1)... 48 0.61 1 (G16118) chicken STS ADL319, sequence tagged site. 48 0.61 1 (DI049443) HUMAN SCHIZOPHRENIA GENE. 48 0.61 1 (DI046388) HUMAN SCHIZOPHRENIA GENE. 48 0.61 1 (DD062477) HUMAN SCHIZOPHRENIA GENE. 48 0.61 1 (DD021122) HUMAN SCHIZOPHRENIA GENE. 48 0.61 1 (AF491780) Homo sapiens neuregulin 1 (NRG1) gene, partial cd... 48 0.61 1 (EF576814) Solanum lycopersicum chromosome 9 clone C09SLe013... 46 0.69 2 (AZ682362) ENTIS70TF Entamoeba histolytica Sheared DNA Entam... 34 1.6 2 (BH131424) ENTPC18TR Entamoeba histolytica Sheared DNA Entam... 34 1.7 2 (AC163360) Bos taurus clone CH240-138E11, *** SEQUENCING IN ... 42 2.2 3 (CR384055) Zebrafish DNA sequence from clone CH211-236C15 in... 46 2.4 1 (AB232918) Oryzias latipes hox gene cluster, complete cds. 46 2.4 1 (CT030001) Mouse DNA sequence from clone RP23-225D15 on chro... 46 2.4 1 (AL772272) Mouse DNA sequence from clone RP23-369I8 on chrom... 46 2.4 1 (AC102354) Mus musculus chromosome 17, clone RP23-80J17, com... 46 2.4 1 (AY293729) Plasmodium berghei D13-like protein (D13) gene, c... 46 2.4 1 (AC018553) Homo sapiens chromosome 16 clone RP11-434E6, comp... 46 2.4 1 (AC004875) Homo sapiens PAC clone RP4-745K6 from 7, complete... 46 2.4 1 (AC124858) Homo sapiens chromosome 5 clone RP11-723A14, WORK... 46 2.4 1 (CT010446) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 46 2.4 1 (AC167092) Sorex araneus clone SA_Ba-185K21, WORKING DRAFT S... 46 2.4 1 (AZ112058) RPCI-23-459N18.TJ RPCI-23 Mus musculus genomic cl... 46 2.4 1 (CZ465768) MCF757h21TR Human MCF7 breast cancer cell line li... 46 2.4 1 (CW945452) TcB27.4_E09_SP6 Tribolium BAC library Tribolium c... 46 2.4 1 (ES832744) UFL_345_65 Cotton fiber 0-10 day post anthesis Go... 46 2.4 1 (EB806678) 3484_L21 Botrytis cinerea expressed sequence tags... 46 2.4 1 (CK852931) 13603 Stolon Solanum tuberosum cDNA, mRNA sequence. 46 2.4 1 (AC115878) Mus musculus chromosome 15, clone RP24-358G9, com... 42 2.8 4 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 2.9 12 (AC232010) Solanum tuberosum strain Diploid genotype RH89-03... 44 2.9 5 (CU695174) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.1 4 (AC223946) Bos taurus clone CH240-454A13, WORKING DRAFT SEQU... 42 4.6 7 (AC027748) Homo sapiens chromosome 3 clone RP11-418A22 map 3... 40 5.5 3 (EJ202931) 1092344314980 Global-Ocean-Sampling_GS-27-01-01-1... 32 6.2 2 (ER406274) 1095366013025 Global-Ocean-Sampling_GS-34-01-01-1... 32 6.2 2 (DW278887) UI-S-HH0-adi-f-12-0-UI.s1 UI-S-HH0 Euprymna scolo... 34 6.2 2 (CU158167) Equus caballus GSS, BAC clone CH241-296H21, T7 en... 32 6.2 2 (EY536328) CAPF9934.fwd CAPF Capitella sp. I ECS-2004 whole ... 34 6.3 2 (EY536327) CAPF9934.rev CAPF Capitella sp. I ECS-2004 whole ... 34 6.3 2 (AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 36 6.6 7 (FE922641) DCAA-aaa57g07.g1 D.africanus_EST Ditylenchus afri... 38 7.0 2 (FG089064) CMRC-FF-IH0-acm-n-13-0-CMRC.r1 Ceratitis capitata... 36 7.2 2 (ES986122) 44JK5DM_UP_048_C09_4JULY2006_075 Brassica napus 4... 38 8.0 2 (AC011457) Homo sapiens chromosome 19 clone CTC-393I15, WORK... 42 8.2 4 (AC006116) Homo sapiens chromosome 19, BAC CIT-B-393i15 (BC3... 42 8.2 4 (DD327950) ATYPICAL PROTEIN KINASE C ISOFORMS IN DISORDERS O... 44 9.1 2 (CR513783) Zebrafish DNA sequence from clone DKEY-246P3 in l... 44 9.6 1 (BC045032) Xenopus laevis x-ray repair cross-complementing g... 44 9.6 1 (BV642015) S215P61049RB3.T0 Clara Pan troglodytes troglodyte... 44 9.6 1 (CU207394) Mouse DNA sequence from clone CH29-183C3 on chrom... 44 9.6 1 (AL845173) Mouse DNA sequence from clone RP23-322G1 on chrom... 44 9.6 1 (AL732400) Mouse DNA sequence from clone RP23-92K6 on chromo... 44 9.6 1 (AC164631) Mus musculus 6 BAC RP23-359M3 (Roswell Park Cance... 44 9.6 1 (AC140303) Mus musculus BAC clone RP23-381H21 from chromosom... 44 9.6 1 (AC135188) Mus musculus BAC clone RP23-206P4 from chromosome... 44 9.6 1 (AC127279) Mus musculus BAC clone RP24-247K4 from chromosome... 44 9.6 1 (AC113293) Mus musculus chromosome 3, clone RP23-418O15, com... 44 9.6 1 (AC195510) Pan troglodytes BAC clone CH251-717I9 from chromo... 44 9.6 1 (AY850394) Lycopersicon esculentum cultivar Heinz1706 chromo... 44 9.6 1 (AP009395) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 9.6 1 (AX015912) Sequence 15 from Patent WO9950284. 44 9.6 1 (AM494951) Leishmania braziliensis chromosome 14. 44 9.6 1 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 44 9.6 1 (AF312225) Homo sapiens chromosome 2 map 2q37.1, complete se... 44 9.6 1 (AC093374) Homo sapiens BAC clone RP13-650L7 from 2, complet... 44 9.6 1 (AC073288) Homo sapiens 3 BAC RP11-543D10 (Roswell Park Canc... 44 9.6 1 (AC063948) Homo sapiens 12 BAC RP11-321F8 (Roswell Park Canc... 44 9.6 1 (AC136241) Rattus norvegicus clone CH230-351N7, *** SEQUENCI... 44 9.6 1 (AC133323) Rattus norvegicus clone CH230-135I5, WORKING DRAF... 44 9.6 1 (AC130995) Rattus norvegicus clone CH230-165J24, *** SEQUENC... 44 9.6 1 (AC126880) Rattus norvegicus clone CH230-263I2, *** SEQUENCI... 44 9.6 1 (AC125871) Rattus norvegicus clone CH230-362N21, WORKING DRA... 44 9.6 1 (AC125869) Rattus norvegicus clone CH230-356N16, WORKING DRA... 44 9.6 1 (AC117282) Rattus norvegicus clone CH230-358I17, WORKING DRA... 44 9.6 1 (AC098127) Rattus norvegicus clone CH230-134I6, WORKING DRAF... 44 9.6 1 (AC097249) Rattus norvegicus clone CH230-177M23, WORKING DRA... 44 9.6 1 (AC096421) Rattus norvegicus clone CH230-36K20, *** SEQUENCI... 44 9.6 1 (CU914356) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.6 1 (CU856656) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.6 1 (AC044856) Homo sapiens chromosome 3 clone RP11-88L22 map 3,... 44 9.6 1 (AC026549) Homo sapiens chromosome 12 clone RP11-464C12 map ... 44 9.6 1 (AC026372) Homo sapiens chromosome 12 clone RP11-147C2, WORK... 44 9.6 1 (CU570827) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.6 1 (AC230807) Bos taurus clone CH240-498O21, WORKING DRAFT SEQU... 44 9.6 1 (AC184416) Strongylocentrotus purpuratus clone R3-3089B23, W... 44 9.6 1 (AC179774) Strongylocentrotus purpuratus clone R3-1016F09, W... 44 9.6 1 (AC179211) Strongylocentrotus purpuratus clone R3-40A10, WOR... 44 9.6 1 (AC169010) Sorex araneus clone SA_Ba-474P18, WORKING DRAFT S... 44 9.6 1 (AC167319) Sorex araneus clone SA_Ba-613P23, WORKING DRAFT S... 44 9.6 1 (AC021053) Homo sapiens chromosome 12 clone RP11-364H4, WORK... 44 9.6 1 (AK086979) Mus musculus 0 day neonate lung cDNA, RIKEN full-... 44 9.6 1 (AQ894209) HS_3224_B1_A02_T7C CIT Approved Human Genomic Spe... 44 9.6 1 (ER806295) PPTA644TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 9.6 1
>(AC115598) Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. Length = 154071
Score = 688 bits (347), Expect(6) = 0.0 Identities = 347/347 (100%) Strand = Plus / Plus
Query: 608 aaaggagtagtattagtaattggtggtattcaaaatccacaaagaggtgaaattcgtgaa 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84419 aaaggagtagtattagtaattggtggtattcaaaatccacaaagaggtgaaattcgtgaa 84478
Query: 668 aaagcattagagatgggagctggatataaaccagattggtgtagagaggcaactcatcta 727 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84479 aaagcattagagatgggagctggatataaaccagattggtgtagagaggcaactcatcta 84538
Query: 728 gtgacaccatttaggggtacagataaatttaaaattgcacaaaaatcaggtggttcaata 787 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84539 gtgacaccatttaggggtacagataaatttaaaattgcacaaaaatcaggtggttcaata 84598
Query: 788 attaaaccaaaatggattgaagattgttataaattgaaatcaagattaccaattaaaaac 847 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84599 attaaaccaaaatggattgaagattgttataaattgaaatcaagattaccaattaaaaac 84658
Query: 848 tatacattccaagatgaccatagtgatagtgatggtcaacaagatgatatagcagaaaag 907 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84659 tatacattccaagatgaccatagtgatagtgatggtcaacaagatgatatagcagaaaag 84718
Query: 908 atagcatcagctaaaaaagcaaagaaaaccattagtacagattcaac 954 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84719 atagcatcagctaaaaaagcaaagaaaaccattagtacagattcaac 84765
Score = 256 bits (129), Expect(6) = 0.0 Identities = 134/136 (98%) Strand = Plus / Plus
Query: 126 gattaattgatttaagtgtatcatgttgctcatcagagagtgaatataataaatcatcaa 185 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 83113 gattaattgatttaagtgtatcatgttgttcatcagagagtgaatataataaatcatcaa 83172
Query: 186 atgttttattggatgatacatatagaatatggcaaactaaagataaaacaggtaaagcat 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83173 atgttttattggatgatacatatagaatatggcaaactaaagataaaacaggtaaagcat 83232
Query: 246 ttatagatntacaatt 261 |||||||| ||||||| Sbjct: 83233 ttatagatttacaatt 83248
Score = 178 bits (90), Expect(6) = 0.0 Identities = 90/90 (100%) Strand = Plus / Plus
Query: 518 gatggtgaaacagatgaagaatgtgatgatttacaaattattgcaacaccaaaacaacaa 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84219 gatggtgaaacagatgaagaatgtgatgatttacaaattattgcaacaccaaaacaacaa 84278
Query: 578 caaaaattaacaccattcggtaatttatta 607 |||||||||||||||||||||||||||||| Sbjct: 84279 caaaaattaacaccattcggtaatttatta 84308
Score = 85.7 bits (43), Expect(6) = 0.0 Identities = 43/43 (100%) Strand = Plus / Plus
Query: 375 aacaaagtgatgaagatgatagtatgcaagatattaaaattgt 417 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84076 aacaaagtgatgaagatgatagtatgcaagatattaaaattgt 84118
Score = 46.1 bits (23), Expect(6) = 0.0 Identities = 23/23 (100%) Strand = Plus / Plus
Query: 1 aacaataaaatctttgtcataat 23 ||||||||||||||||||||||| Sbjct: 82989 aacaataaaatctttgtcataat 83011
Score = 28.2 bits (14), Expect(6) = 0.0 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 359 aattagttgaacca 372 |||||||||||||| Sbjct: 84061 aattagttgaacca 84074
Score = 38.2 bits (19), Expect(7) = 1.9 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 562 aacaccaaaacaacaacaa 580 ||||||||||||||||||| Sbjct: 128345 aacaccaaaacaacaacaa 128363
Score = 30.2 bits (15), Expect(7) = 1.9 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 168 aatataataaatcat 182 ||||||||||||||| Sbjct: 40582 aatataataaatcat 40596
Score = 30.2 bits (15), Expect(7) = 1.9 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 219 aaactaaagataaaa 233 ||||||||||||||| Sbjct: 60701 aaactaaagataaaa 60715
Score = 28.2 bits (14), Expect(7) = 1.9 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 382 tgatgaagatgata 395 |||||||||||||| Sbjct: 71657 tgatgaagatgata 71670
Score = 28.2 bits (14), Expect(7) = 1.9 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 404 gatattaaaattgt 417 |||||||||||||| Sbjct: 122261 gatattaaaattgt 122274
Score = 28.2 bits (14), Expect(7) = 1.9 Identities = 14/14 (100%) Strand = Plus / Plus
Query: 595 cggtaatttattaa 608 |||||||||||||| Sbjct: 131294 cggtaatttattaa 131307
Score = 26.3 bits (13), Expect(7) = 1.9 Identities = 13/13 (100%) Strand = Plus / Plus
Query: 127 attaattgattta 139 ||||||||||||| Sbjct: 37543 attaattgattta 37555
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 844,767,047 Number of extensions: 55900874 Number of successful extensions: 5283015 Number of sequences better than 10.0: 132 Length of query: 954 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 930 Effective length of database: 97,308,875,965 Effective search space: 90497254647450 Effective search space used: 90497254647450 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.24 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |