Contig-U08738-1
Contig ID Contig-U08738-1
Contig update 2002. 9.13
Contig sequence
>Contig-U08738-1 (Contig-U08738-1Q) /CSM_Contig/Contig-U08738-1Q.Seq.d
AACAATAAAATCTTTGTCATAATGCTTTTTTATTTATTTTTTTATTATTA
TTATTTTTAATAAAATGACAACAAAAATAATAACACAAACACAAGTACAG
ACACAAACACCAATAAAACCACCAAGATTAATTGATTTAAGTGTATCATG
TTGCTCATCAGAGAGTGAATATAATAAATCATCAAATGTTTTATTGGATG
ATACATATAGAATATGGCAAACTAAAGATAAAACAGGTAAAGCATTTATA
GATNTACAATTN----------TAANAAAAAATTAGATCATCAACAAAAA
AANCAATCATCANAACAATCATCACAACAATCATCACAACAGCAAAAACA
AAAATCANAATTAGTTGAACCANNAACAAAGTGATGAAGATGATAGTATG
CAAGATATTAAAATTGTTAATAATAATAATAATAATAATAATAATAATAN
CAATAAAAATGAAAATCAAACTAAATCAACTGATAGAAAATCATTAGAAA
AATTAACAAATACAAATGATGGTGAAACAGATGAAGAATGTGATGATTTA
CAAATTATTGCAACACCAAAACAACAACAAAAATTAACACCATTCGGTAA
TTTATTAAAAGGAGTAGTATTAGTAATTGGTGGTATTCAAAATCCACAAA
GAGGTGAAATTCGTGAAAAAGCATTAGAGATGGGAGCTGGATATAAACCA
GATTGGTGTAGAGAGGCAACTCATCTAGTGACACCATTTAGGGGTACAGA
TAAATTTAAAATTGCACAAAAATCAGGTGGTTCAATAATTAAACCAAAAT
GGATTGAAGATTGTTATAAATTGAAATCAAGATTACCAATTAAAAACTAT
ACATTCCAAGATGACCATAGTGATAGTGATGGTCAACAAGATGATATAGC
AGAAAAGATAGCATCAGCTAAAAAAGCAAAGAAAACCATTAGTACAGATT
CAAC

Gap gap included
Contig length 944
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5818209
End point 5817264
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U08738
List of clone(s)

est1=AFF374F,1,263
est2=AFF374Z,264,946
Translated Amino Acid sequence
tiksls*CFFIYFFIIIIFNKMTTKIITQTQVQTQTPIKPPRLIDLSVSCCSSESEYNKS
SNVLLDDTYRIWQTKDKTGKAFIDXQX---

---XKKLDHQQKXQSSXQSSQQSSQQQKQKSXLVEPXTK**r**yary*nc*********
*xq*k*ksn*in**kiirkinkyk*w*nr*rm**ftnycntktttkintir*fikrssis
nwwyskstkr*ns*ksirdgswi*trlv*rgnsssdti*gyr*i*nctkirwfnn*tkmd
*rll*ieikitn*klyipr*p****wstr*ysrkdsis*kskenh*yrfn


Translated Amino Acid sequence (All Frames)
Frame A:
nnkifvimlfylffyyyyf**ndnknnntntstdtntnkttkin*fkcimllire*i**i
ikcfig*yi*nman*r*nr*siyrxti---

---*xkirsstkkxiixtiittiittaktkixis*txnkvmkmivckilklliiiiiiii
iixikmkiklnqlienh*kn*qiqmmvkqmknvmiykllqhqnnnkn*hhsviy*ke*y*
*lvvfkihkevkfvkkh*rweldinqigverqli**hhlgvqinlklhknqvvq*lnqng
lkivin*nqdyqlktihskmtivivmvnkmi*qkr*hqlkkqrkplvqiq

Frame B:
tiksls*CFFIYFFIIIIFNKMTTKIITQTQVQTQTPIKPPRLIDLSVSCCSSESEYNKS
SNVLLDDTYRIWQTKDKTGKAFIDXQX---

---XKKLDHQQKXQSSXQSSQQSSQQQKQKSXLVEPXTK**r**yary*nc*********
*xq*k*ksn*in**kiirkinkyk*w*nr*rm**ftnycntktttkintir*fikrssis
nwwyskstkr*ns*ksirdgswi*trlv*rgnsssdti*gyr*i*nctkirwfnn*tkmd
*rll*ieikitn*klyipr*p****wstr*ysrkdsis*kskenh*yrfn

Frame C:
q*nlchnaflfifllllflik*qqk**hkhkyrhkhq*nhqd*li*vyhvahqrvniinh
qmfywmihieygklkikqvkhl*xyn---

---xkn*iinkkxnhxnnhhnnhhnsknknxn*lnxxqsdeddsmqdikivnnnnnnnnn
nxnknenqtkstdrkslekltntndgetdeecddlqiiatpkqqqkltpfgnllkgvvlv
iggiqnpqrgeirekalemgagykpdwcreathlvtpfrgtdkfkiaqksggsiikpkwi
edcyklksrlpiknytfqddhsdsdgqqddiaekiasakkakktistds

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U08738-1 (Contig-U08738-1Q)
/CSM_Contig/Contig-U08738-1Q.Seq.d
(954 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U08738-1 (Contig-U08738-1Q) /CSM_Contig/Conti... 878 0.0
Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U11307-1 (Contig-U11307-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U11187-1 (Contig-U11187-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U03236-1 (Contig-U03236-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U12803-1 (Contig-U12803-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U06273-1 (Contig-U06273-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U01323-1 (Contig-U01323-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U01237-1 (Contig-U01237-1Q) /CSM_Contig/Conti... 38 0.017
Contig-U13942-1 (Contig-U13942-1Q) /CSM_Contig/Conti... 36 0.067

>Contig-U08738-1 (Contig-U08738-1Q) /CSM_Contig/Contig-U08738-1Q.Seq.d
Length = 954

Score = 878 bits (443), Expect = 0.0
Identities = 443/443 (100%)
Strand = Plus / Plus


Query: 512 acaaatgatggtgaaacagatgaagaatgtgatgatttacaaattattgcaacaccaaaa 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 acaaatgatggtgaaacagatgaagaatgtgatgatttacaaattattgcaacaccaaaa 571


Query: 572 caacaacaaaaattaacaccattcggtaatttattaaaaggagtagtattagtaattggt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 caacaacaaaaattaacaccattcggtaatttattaaaaggagtagtattagtaattggt 631


Query: 632 ggtattcaaaatccacaaagaggtgaaattcgtgaaaaagcattagagatgggagctgga 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggtattcaaaatccacaaagaggtgaaattcgtgaaaaagcattagagatgggagctgga 691


Query: 692 tataaaccagattggtgtagagaggcaactcatctagtgacaccatttaggggtacagat 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tataaaccagattggtgtagagaggcaactcatctagtgacaccatttaggggtacagat 751


Query: 752 aaatttaaaattgcacaaaaatcaggtggttcaataattaaaccaaaatggattgaagat 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaatttaaaattgcacaaaaatcaggtggttcaataattaaaccaaaatggattgaagat 811


Query: 812 tgttataaattgaaatcaagattaccaattaaaaactatacattccaagatgaccatagt 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tgttataaattgaaatcaagattaccaattaaaaactatacattccaagatgaccatagt 871


Query: 872 gatagtgatggtcaacaagatgatatagcagaaaagatagcatcagctaaaaaagcaaag 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gatagtgatggtcaacaagatgatatagcagaaaagatagcatcagctaaaaaagcaaag 931


Query: 932 aaaaccattagtacagattcaac 954
|||||||||||||||||||||||
Sbjct: 932 aaaaccattagtacagattcaac 954


Score = 276 bits (139), Expect = 4e-74
Identities = 142/142 (100%)
Strand = Plus / Plus


Query: 120 caccaagattaattgatttaagtgtatcatgttgctcatcagagagtgaatataataaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 caccaagattaattgatttaagtgtatcatgttgctcatcagagagtgaatataataaat 179


Query: 180 catcaaatgttttattggatgatacatatagaatatggcaaactaaagataaaacaggta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 catcaaatgttttattggatgatacatatagaatatggcaaactaaagataaaacaggta 239


Query: 240 aagcatttatagatntacaatt 261
||||||||||||||||||||||
Sbjct: 240 aagcatttatagatntacaatt 261


Score = 105 bits (53), Expect = 9e-23
Identities = 59/59 (100%)
Strand = Plus / Plus


Query: 359 aattagttgaaccannaacaaagtgatgaagatgatagtatgcaagatattaaaattgt 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aattagttgaaccannaacaaagtgatgaagatgatagtatgcaagatattaaaattgt 417


Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1 aacaataaaatctttgtcataatgc 25
|||||||||||||||||||||||||
Sbjct: 1 aacaataaaatctttgtcataatgc 25


>Contig-U11442-1 (Contig-U11442-1Q) /CSM_Contig/Contig-U11442-1Q.Seq.d
Length = 1534

Score = 40.1 bits (20), Expect = 0.004
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 564 caccaaaacaacaacaaaaattaa 587
||||||||||||||||| ||||||
Sbjct: 531 caccaaaacaacaacaacaattaa 554


>Contig-U11307-1 (Contig-U11307-1Q) /CSM_Contig/Contig-U11307-1Q.Seq.d
Length = 1908

Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 568 aaaacaacaacaaaaattaa 587
||||||||||||||||||||
Sbjct: 1496 aaaacaacaacaaaaattaa 1515


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,169
Number of Sequences: 6905
Number of extensions: 17169
Number of successful extensions: 1934
Number of sequences better than 10.0: 198
length of query: 954
length of database: 5,674,871
effective HSP length: 16
effective length of query: 938
effective length of database: 5,564,391
effective search space: 5219398758
effective search space used: 5219398758
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA
Query= Contig-U08738-1 (Contig-U08738-1Q) /CSM_Contig/Contig-U08738-1Q.Seq.d
(954 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 688 0.0 6
(BJ340131) Dictyostelium discoideum cDNA clone:dda11d19, 3' ... 866 0.0 2
(BJ323684) Dictyostelium discoideum cDNA clone:dda11d19, 5' ... 264 2e-73 2
(AC068359) Homo sapiens chromosome 8, clone RP11-468C1, comp... 48 7e-04 4
(AX282717) Sequence 1534 from Patent WO0164876. 48 0.008 5
(AX282125) Sequence 1534 from Patent WO0164877. 48 0.008 5
(BK000383) TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1)... 48 0.61 1
(G16118) chicken STS ADL319, sequence tagged site. 48 0.61 1
(DI049443) HUMAN SCHIZOPHRENIA GENE. 48 0.61 1
(DI046388) HUMAN SCHIZOPHRENIA GENE. 48 0.61 1
(DD062477) HUMAN SCHIZOPHRENIA GENE. 48 0.61 1
(DD021122) HUMAN SCHIZOPHRENIA GENE. 48 0.61 1
(AF491780) Homo sapiens neuregulin 1 (NRG1) gene, partial cd... 48 0.61 1
(EF576814) Solanum lycopersicum chromosome 9 clone C09SLe013... 46 0.69 2
(AZ682362) ENTIS70TF Entamoeba histolytica Sheared DNA Entam... 34 1.6 2
(BH131424) ENTPC18TR Entamoeba histolytica Sheared DNA Entam... 34 1.7 2
(AC163360) Bos taurus clone CH240-138E11, *** SEQUENCING IN ... 42 2.2 3
(CR384055) Zebrafish DNA sequence from clone CH211-236C15 in... 46 2.4 1
(AB232918) Oryzias latipes hox gene cluster, complete cds. 46 2.4 1
(CT030001) Mouse DNA sequence from clone RP23-225D15 on chro... 46 2.4 1
(AL772272) Mouse DNA sequence from clone RP23-369I8 on chrom... 46 2.4 1
(AC102354) Mus musculus chromosome 17, clone RP23-80J17, com... 46 2.4 1
(AY293729) Plasmodium berghei D13-like protein (D13) gene, c... 46 2.4 1
(AC018553) Homo sapiens chromosome 16 clone RP11-434E6, comp... 46 2.4 1
(AC004875) Homo sapiens PAC clone RP4-745K6 from 7, complete... 46 2.4 1
(AC124858) Homo sapiens chromosome 5 clone RP11-723A14, WORK... 46 2.4 1
(CT010446) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 46 2.4 1
(AC167092) Sorex araneus clone SA_Ba-185K21, WORKING DRAFT S... 46 2.4 1
(AZ112058) RPCI-23-459N18.TJ RPCI-23 Mus musculus genomic cl... 46 2.4 1
(CZ465768) MCF757h21TR Human MCF7 breast cancer cell line li... 46 2.4 1
(CW945452) TcB27.4_E09_SP6 Tribolium BAC library Tribolium c... 46 2.4 1
(ES832744) UFL_345_65 Cotton fiber 0-10 day post anthesis Go... 46 2.4 1
(EB806678) 3484_L21 Botrytis cinerea expressed sequence tags... 46 2.4 1
(CK852931) 13603 Stolon Solanum tuberosum cDNA, mRNA sequence. 46 2.4 1
(AC115878) Mus musculus chromosome 15, clone RP24-358G9, com... 42 2.8 4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 2.9 12
(AC232010) Solanum tuberosum strain Diploid genotype RH89-03... 44 2.9 5
(CU695174) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.1 4
(AC223946) Bos taurus clone CH240-454A13, WORKING DRAFT SEQU... 42 4.6 7
(AC027748) Homo sapiens chromosome 3 clone RP11-418A22 map 3... 40 5.5 3
(EJ202931) 1092344314980 Global-Ocean-Sampling_GS-27-01-01-1... 32 6.2 2
(ER406274) 1095366013025 Global-Ocean-Sampling_GS-34-01-01-1... 32 6.2 2
(DW278887) UI-S-HH0-adi-f-12-0-UI.s1 UI-S-HH0 Euprymna scolo... 34 6.2 2
(CU158167) Equus caballus GSS, BAC clone CH241-296H21, T7 en... 32 6.2 2
(EY536328) CAPF9934.fwd CAPF Capitella sp. I ECS-2004 whole ... 34 6.3 2
(EY536327) CAPF9934.rev CAPF Capitella sp. I ECS-2004 whole ... 34 6.3 2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 36 6.6 7
(FE922641) DCAA-aaa57g07.g1 D.africanus_EST Ditylenchus afri... 38 7.0 2
(FG089064) CMRC-FF-IH0-acm-n-13-0-CMRC.r1 Ceratitis capitata... 36 7.2 2
(ES986122) 44JK5DM_UP_048_C09_4JULY2006_075 Brassica napus 4... 38 8.0 2
(AC011457) Homo sapiens chromosome 19 clone CTC-393I15, WORK... 42 8.2 4
(AC006116) Homo sapiens chromosome 19, BAC CIT-B-393i15 (BC3... 42 8.2 4
(DD327950) ATYPICAL PROTEIN KINASE C ISOFORMS IN DISORDERS O... 44 9.1 2
(CR513783) Zebrafish DNA sequence from clone DKEY-246P3 in l... 44 9.6 1
(BC045032) Xenopus laevis x-ray repair cross-complementing g... 44 9.6 1
(BV642015) S215P61049RB3.T0 Clara Pan troglodytes troglodyte... 44 9.6 1
(CU207394) Mouse DNA sequence from clone CH29-183C3 on chrom... 44 9.6 1
(AL845173) Mouse DNA sequence from clone RP23-322G1 on chrom... 44 9.6 1
(AL732400) Mouse DNA sequence from clone RP23-92K6 on chromo... 44 9.6 1
(AC164631) Mus musculus 6 BAC RP23-359M3 (Roswell Park Cance... 44 9.6 1
(AC140303) Mus musculus BAC clone RP23-381H21 from chromosom... 44 9.6 1
(AC135188) Mus musculus BAC clone RP23-206P4 from chromosome... 44 9.6 1
(AC127279) Mus musculus BAC clone RP24-247K4 from chromosome... 44 9.6 1
(AC113293) Mus musculus chromosome 3, clone RP23-418O15, com... 44 9.6 1
(AC195510) Pan troglodytes BAC clone CH251-717I9 from chromo... 44 9.6 1
(AY850394) Lycopersicon esculentum cultivar Heinz1706 chromo... 44 9.6 1
(AP009395) Solanum lycopersicum genomic DNA, chromosome 8, c... 44 9.6 1
(AX015912) Sequence 15 from Patent WO9950284. 44 9.6 1
(AM494951) Leishmania braziliensis chromosome 14. 44 9.6 1
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 44 9.6 1
(AF312225) Homo sapiens chromosome 2 map 2q37.1, complete se... 44 9.6 1
(AC093374) Homo sapiens BAC clone RP13-650L7 from 2, complet... 44 9.6 1
(AC073288) Homo sapiens 3 BAC RP11-543D10 (Roswell Park Canc... 44 9.6 1
(AC063948) Homo sapiens 12 BAC RP11-321F8 (Roswell Park Canc... 44 9.6 1
(AC136241) Rattus norvegicus clone CH230-351N7, *** SEQUENCI... 44 9.6 1
(AC133323) Rattus norvegicus clone CH230-135I5, WORKING DRAF... 44 9.6 1
(AC130995) Rattus norvegicus clone CH230-165J24, *** SEQUENC... 44 9.6 1
(AC126880) Rattus norvegicus clone CH230-263I2, *** SEQUENCI... 44 9.6 1
(AC125871) Rattus norvegicus clone CH230-362N21, WORKING DRA... 44 9.6 1
(AC125869) Rattus norvegicus clone CH230-356N16, WORKING DRA... 44 9.6 1
(AC117282) Rattus norvegicus clone CH230-358I17, WORKING DRA... 44 9.6 1
(AC098127) Rattus norvegicus clone CH230-134I6, WORKING DRAF... 44 9.6 1
(AC097249) Rattus norvegicus clone CH230-177M23, WORKING DRA... 44 9.6 1
(AC096421) Rattus norvegicus clone CH230-36K20, *** SEQUENCI... 44 9.6 1
(CU914356) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.6 1
(CU856656) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.6 1
(AC044856) Homo sapiens chromosome 3 clone RP11-88L22 map 3,... 44 9.6 1
(AC026549) Homo sapiens chromosome 12 clone RP11-464C12 map ... 44 9.6 1
(AC026372) Homo sapiens chromosome 12 clone RP11-147C2, WORK... 44 9.6 1
(CU570827) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.6 1
(AC230807) Bos taurus clone CH240-498O21, WORKING DRAFT SEQU... 44 9.6 1
(AC184416) Strongylocentrotus purpuratus clone R3-3089B23, W... 44 9.6 1
(AC179774) Strongylocentrotus purpuratus clone R3-1016F09, W... 44 9.6 1
(AC179211) Strongylocentrotus purpuratus clone R3-40A10, WOR... 44 9.6 1
(AC169010) Sorex araneus clone SA_Ba-474P18, WORKING DRAFT S... 44 9.6 1
(AC167319) Sorex araneus clone SA_Ba-613P23, WORKING DRAFT S... 44 9.6 1
(AC021053) Homo sapiens chromosome 12 clone RP11-364H4, WORK... 44 9.6 1
(AK086979) Mus musculus 0 day neonate lung cDNA, RIKEN full-... 44 9.6 1
(AQ894209) HS_3224_B1_A02_T7C CIT Approved Human Genomic Spe... 44 9.6 1
(ER806295) PPTA644TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 9.6 1

>(AC115598) Dictyostelium discoideum chromosome 2 map 581427-735498
strain AX4, complete sequence.
Length = 154071

Score = 688 bits (347), Expect(6) = 0.0
Identities = 347/347 (100%)
Strand = Plus / Plus


Query: 608 aaaggagtagtattagtaattggtggtattcaaaatccacaaagaggtgaaattcgtgaa 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84419 aaaggagtagtattagtaattggtggtattcaaaatccacaaagaggtgaaattcgtgaa 84478


Query: 668 aaagcattagagatgggagctggatataaaccagattggtgtagagaggcaactcatcta 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84479 aaagcattagagatgggagctggatataaaccagattggtgtagagaggcaactcatcta 84538


Query: 728 gtgacaccatttaggggtacagataaatttaaaattgcacaaaaatcaggtggttcaata 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84539 gtgacaccatttaggggtacagataaatttaaaattgcacaaaaatcaggtggttcaata 84598


Query: 788 attaaaccaaaatggattgaagattgttataaattgaaatcaagattaccaattaaaaac 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84599 attaaaccaaaatggattgaagattgttataaattgaaatcaagattaccaattaaaaac 84658


Query: 848 tatacattccaagatgaccatagtgatagtgatggtcaacaagatgatatagcagaaaag 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84659 tatacattccaagatgaccatagtgatagtgatggtcaacaagatgatatagcagaaaag 84718


Query: 908 atagcatcagctaaaaaagcaaagaaaaccattagtacagattcaac 954
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84719 atagcatcagctaaaaaagcaaagaaaaccattagtacagattcaac 84765

Score = 256 bits (129), Expect(6) = 0.0
Identities = 134/136 (98%)
Strand = Plus / Plus


Query: 126 gattaattgatttaagtgtatcatgttgctcatcagagagtgaatataataaatcatcaa 185
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 83113 gattaattgatttaagtgtatcatgttgttcatcagagagtgaatataataaatcatcaa 83172


Query: 186 atgttttattggatgatacatatagaatatggcaaactaaagataaaacaggtaaagcat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83173 atgttttattggatgatacatatagaatatggcaaactaaagataaaacaggtaaagcat 83232


Query: 246 ttatagatntacaatt 261
|||||||| |||||||
Sbjct: 83233 ttatagatttacaatt 83248

Score = 178 bits (90), Expect(6) = 0.0
Identities = 90/90 (100%)
Strand = Plus / Plus


Query: 518 gatggtgaaacagatgaagaatgtgatgatttacaaattattgcaacaccaaaacaacaa 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84219 gatggtgaaacagatgaagaatgtgatgatttacaaattattgcaacaccaaaacaacaa 84278


Query: 578 caaaaattaacaccattcggtaatttatta 607
||||||||||||||||||||||||||||||
Sbjct: 84279 caaaaattaacaccattcggtaatttatta 84308

Score = 85.7 bits (43), Expect(6) = 0.0
Identities = 43/43 (100%)
Strand = Plus / Plus


Query: 375 aacaaagtgatgaagatgatagtatgcaagatattaaaattgt 417
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84076 aacaaagtgatgaagatgatagtatgcaagatattaaaattgt 84118

Score = 46.1 bits (23), Expect(6) = 0.0
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 1 aacaataaaatctttgtcataat 23
|||||||||||||||||||||||
Sbjct: 82989 aacaataaaatctttgtcataat 83011

Score = 28.2 bits (14), Expect(6) = 0.0
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 359 aattagttgaacca 372
||||||||||||||
Sbjct: 84061 aattagttgaacca 84074

Score = 38.2 bits (19), Expect(7) = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 562 aacaccaaaacaacaacaa 580
|||||||||||||||||||
Sbjct: 128345 aacaccaaaacaacaacaa 128363

Score = 30.2 bits (15), Expect(7) = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 168 aatataataaatcat 182
|||||||||||||||
Sbjct: 40582 aatataataaatcat 40596

Score = 30.2 bits (15), Expect(7) = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 219 aaactaaagataaaa 233
|||||||||||||||
Sbjct: 60701 aaactaaagataaaa 60715

Score = 28.2 bits (14), Expect(7) = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 382 tgatgaagatgata 395
||||||||||||||
Sbjct: 71657 tgatgaagatgata 71670

Score = 28.2 bits (14), Expect(7) = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 404 gatattaaaattgt 417
||||||||||||||
Sbjct: 122261 gatattaaaattgt 122274

Score = 28.2 bits (14), Expect(7) = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 595 cggtaatttattaa 608
||||||||||||||
Sbjct: 131294 cggtaatttattaa 131307

Score = 26.3 bits (13), Expect(7) = 1.9
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 127 attaattgattta 139
|||||||||||||
Sbjct: 37543 attaattgattta 37555

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 844,767,047
Number of extensions: 55900874
Number of successful extensions: 5283015
Number of sequences better than 10.0: 132
Length of query: 954
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 930
Effective length of database: 97,308,875,965
Effective search space: 90497254647450
Effective search space used: 90497254647450
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U08738-1 (Contig-U08738-1Q) /CSM_Contig/Contig-U08738-1Q.Seq.d
(954 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115598_29(AC115598|pid:none) Dictyostelium discoideum chromoso... 270 4e-71
(O54935) RecName: Full=DNA repair protein XRCC1; AltName: Full=X... 99 3e-19
(P18887) RecName: Full=DNA repair protein XRCC1; AltName: Full=X... 99 3e-19
(Q9ESZ0) RecName: Full=DNA repair protein XRCC1; AltName: Full=X... 98 5e-19
AF290895_1(AF290895|pid:none) Rattus norvegicus x-ray repair cro... 98 5e-19
AK315332_1(AK315332|pid:none) Homo sapiens cDNA, FLJ96373, highl... 96 1e-18
AK165569_1(AK165569|pid:none) Mus musculus brain CRL-1443 BC3H1 ... 96 2e-18
AK168334_1(AK168334|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 95 3e-18
AK168727_1(AK168727|pid:none) Mus musculus 16 days embryo kidney... 95 4e-18
AE014298_757(AE014298|pid:none) Drosophila melanogaster chromoso... 95 4e-18
(Q60596) RecName: Full=DNA repair protein XRCC1; AltName: Full=X... 95 4e-18
AB292807_1(AB292807|pid:none) Oryza sativa Japonica Group xrcc1 ... 86 1e-15
AF324348_1(AF324348|pid:none) Arabidopsis thaliana putative DNA ... 84 5e-15
AP005158_24(AP005158|pid:none) Oryza sativa Japonica Group genom... 47 0.001
AM447089_1(AM447089|pid:none) Vitis vinifera contig VV78X253036.... 46 0.002
AM269973_21(AM269973|pid:none) Aspergillus niger contig An01c026... 45 0.003
EU972195_1(EU972195|pid:none) Zea mays clone 377206 unknown mRNA. 44 0.011
AM270324_24(AM270324|pid:none) Aspergillus niger contig An14c017... 43 0.014
EU972850_1(EU972850|pid:none) Zea mays clone 389070 ubiquitin-pr... 43 0.014
BT088015_1(BT088015|pid:none) Zea mays full-length cDNA clone ZM... 43 0.014
AM920437_544(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 43 0.014
AC004146_9(AC004146|pid:none) Arabidopsis thaliana chromosome I ... 42 0.031
BT068694_1(BT068694|pid:none) Zea mays full-length cDNA clone ZM... 42 0.040
AJ511367_1(AJ511367|pid:none) Arabidopsis thaliana mRNA for MEI1... 41 0.068
EF146364_1(EF146364|pid:none) Populus trichocarpa clone WS0117_J... 41 0.068
(O94623) RecName: Full=DNA repair protein rev1; EC=2.7.... 40 0.089
AY675169_1(AY675169|pid:none) Gallus gallus REV1 protein (REV1) ... 40 0.12
AC117072_26(AC117072|pid:none) Dictyostelium discoideum chromoso... 39 0.20
AC137830_28(AC137830|pid:none) Medicago truncatula clone mth2-33... 39 0.20
AM920436_345(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 39 0.20
EU955825_1(EU955825|pid:none) Zea mays clone 1547733 unknown mRNA. 39 0.26
AP005570_17(AP005570|pid:none) Oryza sativa Japonica Group genom... 39 0.26
AY919043_1(AY919043|pid:none) Homo sapiens truncated REV1-like (... 39 0.34
BC130411_1(BC130411|pid:none) Homo sapiens REV1 homolog (S. cere... 39 0.34
AB047646_1(AB047646|pid:none) Homo sapiens mRNA for Rev1S, compl... 39 0.34
(Q9UBZ9) RecName: Full=DNA repair protein REV1; EC=2.7.... 39 0.34
CR954207_237(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 38 0.58
AE017342_158(AE017342|pid:none) Cryptococcus neoformans var. neo... 37 0.76
AF179302_1(AF179302|pid:none) Mus musculus REV1 protein (Rev1) m... 37 0.76
(Q920Q2) RecName: Full=DNA repair protein REV1; EC=2.7.... 37 0.76
BC142327_1(BC142327|pid:none) Bos taurus REV1 homolog (S. cerevi... 37 1.3
AM481613_2(AM481613|pid:none) Vitis vinifera contig VV78X161473.... 37 1.3
AY850394_5(AY850394|pid:none) Lycopersicon esculentum cultivar H... 37 1.3
AL356172_20(AL356172|pid:none) Neurospora crassa DNA linkage gro... 36 1.7
T49721(T49721)hypothetical protein B23L21.340 [imported] - Neuro... 36 1.7
AP004316_11(AP004316|pid:none) Oryza sativa Japonica Group genom... 36 1.7
AY487422_1(AY487422|pid:none) Xenopus laevis epithelial cell tra... 35 2.9
BC007170_1(BC007170|pid:none) Mus musculus topoisomerase (DNA) I... 35 2.9
BC062111_1(BC062111|pid:none) Mus musculus topoisomerase (DNA) I... 35 2.9
AC078898_2(AC078898|pid:none) Arabidopsis thaliana chromosome 1 ... 35 3.8
BC155458_1(BC155458|pid:none) Xenopus tropicalis hypothetical pr... 35 3.8
DQ847274_1(DQ847274|pid:none) Homo sapiens epithelial cell trans... 35 3.8
AK023267_1(AK023267|pid:none) Homo sapiens cDNA FLJ13205 fis, cl... 35 3.8
CP001600_2991(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 35 4.9
BC084325_1(BC084325|pid:none) Xenopus laevis epithelial cell tra... 35 4.9
(Q9P376) RecName: Full=RNA polymerase II subunit A C-terminal do... 35 4.9
(P38850) RecName: Full=Regulator of Ty1 transposition protein 10... 35 4.9
AC146333_25(AC146333|pid:none) Medicago truncatula clone mth2-8d... 35 4.9
AB019397_1(AB019397|pid:none) Homo sapiens mRNA for DNA topoisom... 34 6.4
BC170556_1(BC170556|pid:none) Xenopus laevis Cut5-related protei... 34 6.4
CP001323_526(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 34 6.4
(Q92547) RecName: Full=DNA topoisomerase 2-binding protein 1; Al... 34 6.4
AY253323_1(AY253323|pid:none) Xenopus laevis Xmus101 (Xmus101) m... 34 6.4
BC126209_1(BC126209|pid:none) Homo sapiens topoisomerase (DNA) I... 34 6.4
DQ138912_1(DQ138912|pid:none) Drosophila yakuba strain T33 CG111... 34 8.4
FN392320_687(FN392320|pid:none) Pichia pastoris GS115 chromosome... 34 8.4
AE013599_4137(AE013599|pid:none) Drosophila melanogaster chromos... 34 8.4
AY570943_1(AY570943|pid:none) Felis catus microcephalin mRNA, co... 34 8.4
AC152921_6(AC152921|pid:none) Medicago truncatula clone mth2-102... 34 8.4
EU204935_1(EU204935|pid:none) Cercocebus torquatus atys Toll-lik... 34 8.4

>AC115598_29(AC115598|pid:none) Dictyostelium discoideum chromosome
2 map 581427-735498 strain AX4, complete sequence.
Length = 947

Score = 270 bits (691), Expect = 4e-71
Identities = 134/150 (89%), Positives = 134/150 (89%)
Frame = +2

Query: 407 IKIVXXXXXXXXXXXXXXXXQTKSTDRKSLEKLTNTNDGETDEECDDLQIIATPKQQQKL 586
IKIV QTKSTDRKSLEKLTNTNDGETDEECDDLQIIATPKQQQKL
Sbjct: 353 IKIVNNNNNNNNNNNNKNENQTKSTDRKSLEKLTNTNDGETDEECDDLQIIATPKQQQKL 412

Query: 587 TPFGNLLKGVVLVIGGIQNPQRGEIREKALEMGAGYKPDWCREATHLVTPFRGTDKFKIA 766
TPFGNLLKGVVLVIGGIQNPQRGEIREKALEMGAGYKPDWCREATHLVTPFRGTDKFKIA
Sbjct: 413 TPFGNLLKGVVLVIGGIQNPQRGEIREKALEMGAGYKPDWCREATHLVTPFRGTDKFKIA 472

Query: 767 QKSGGSIIKPKWIEDCYKLKSRLPIKNYTF 856
QKSGGSIIKPKWIEDCYKLKSRLPIKNYTF
Sbjct: 473 QKSGGSIIKPKWIEDCYKLKSRLPIKNYTF 502

Score = 92.8 bits (229), Expect = 2e-17
Identities = 44/45 (97%), Positives = 44/45 (97%)
Frame = +2

Query: 125 RLIDLSVSCCSSESEYNKSSNVLLDDTYRIWQTKDKTGKAFIDXQ 259
RLIDLSVSCCSSESEYNKSSNVLLDDTYRIWQTKDKTGKAFID Q
Sbjct: 21 RLIDLSVSCCSSESEYNKSSNVLLDDTYRIWQTKDKTGKAFIDLQ 65

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 852,207,381
Number of extensions: 14357281
Number of successful extensions: 33305
Number of sequences better than 10.0: 70
Number of HSP's gapped: 33285
Number of HSP's successfully gapped: 74
Length of query: 318
Length of database: 1,040,966,779
Length adjustment: 128
Effective length of query: 190
Effective length of database: 630,818,299
Effective search space: 119855476810
Effective search space used: 119855476810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.00 gvh: 0.62 alm: 0.32 top: 0.60 tms: 0.07 mit: 0.37 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U08738-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0