Contig-U01510-1
Contig ID Contig-U01510-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01510-1 (Contig-U01510-1Q) /CSM_Contig/Contig-U01510-1Q.Seq.d
AATTTTTTATATTATTAATAATAATTAAAAAAAAAAAAAAAAAATTAAAA
TTAAAATTAAATAGTAATAAAAAAAAATAATAAAACAAAAATTAATTTTT
TTTTATTACTATTTAATTTTAATTTTAATAGTAATAAAAAAAAATAATAA
AACAAAAATTAATTTAAAAAAAAAAAA

Gap no gap
Contig length 177
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U01510
List of clone(s)

est1=SSA352Z,1,178
Translated Amino Acid sequence
ifyiinnn*kkkkkikikik***KKIIKQKLIFFYYYLILILIVIKKNNKTKINLKKK


Translated Amino Acid sequence (All Frames)
Frame A:
nflyy***lkkkkkn*n*n*ivikknnktkinfflllfnfnfnsnkkk**nkn*fkkkk


Frame B:
ifyiinnn*kkkkkikikik***KKIIKQKLIFFYYYLILILIVIKKNNKTKINLKKK


Frame C:
ffilliiikkkkkklklklnsnkkk**nkn*fffiti*f*f****kkiikqkli*kkk


own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01510-1 (Contig-U01510-1Q)
/CSM_Contig/Contig-U01510-1Q.Seq.d
(177 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01510-1 (Contig-U01510-1Q) /CSM_Contig/Conti... 52 3e-07
Contig-U07217-1 (Contig-U07217-1Q) /CSM_Contig/Conti... 40 0.001
Contig-U01418-1 (Contig-U01418-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U01385-1 (Contig-U01385-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U14053-1 (Contig-U14053-1Q) /CSM_Contig/Conti... 36 0.016
Contig-U11639-1 (Contig-U11639-1Q) /CSM_Contig/Conti... 36 0.016
Contig-U10992-1 (Contig-U10992-1Q) /CSM_Contig/Conti... 36 0.016
Contig-U10299-1 (Contig-U10299-1Q) /CSM_Contig/Conti... 36 0.016
Contig-U06540-1 (Contig-U06540-1Q) /CSM_Contig/Conti... 36 0.016
Contig-U09479-1 (Contig-U09479-1Q) /CSM_Contig/Conti... 34 0.064

>Contig-U01510-1 (Contig-U01510-1Q) /CSM_Contig/Contig-U01510-1Q.Seq.d
Length = 177

Score = 52.0 bits (26), Expect = 3e-07
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1 aattttttatattattaataataatt 26
||||||||||||||||||||||||||
Sbjct: 1 aattttttatattattaataataatt 26


Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 10 tattattaataata 23
||||||||||||||
Sbjct: 23 tattattaataata 10


>Contig-U07217-1 (Contig-U07217-1Q) /CSM_Contig/Contig-U07217-1Q.Seq.d
Length = 697

Score = 40.1 bits (20), Expect = 0.001
Identities = 23/24 (95%)
Strand = Plus / Minus


Query: 3 ttttttatattattaataataatt 26
|||||||||||| |||||||||||
Sbjct: 588 ttttttatattaataataataatt 565


>Contig-U01418-1 (Contig-U01418-1Q) /CSM_Contig/Contig-U01418-1Q.Seq.d
Length = 973

Score = 38.2 bits (19), Expect = 0.004
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 8 tatattattaataataatt 26
|||||||||||||||||||
Sbjct: 953 tatattattaataataatt 971


Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 10 tattattaataata 23
||||||||||||||
Sbjct: 968 tattattaataata 955


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4542
Number of Sequences: 8361
Number of extensions: 4542
Number of successful extensions: 1748
Number of sequences better than 10.0: 233
length of query: 177
length of database: 7,895,291
effective HSP length: 15
effective length of query: 162
effective length of database: 7,769,876
effective search space: 1258719912
effective search space used: 1258719912
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 4.29
Homology vs DNA
Query= Contig-U01510-1 (Contig-U01510-1Q) /CSM_Contig/Contig-U01510-1Q.Seq.d
(177 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU051795) Dictyostelium discoideum slug cDNA, clone SSA352. 52 0.007 1
(AC142420) Rattus norvegicus clone CH230-262M24, WORKING DRA... 48 0.10 1
(EI449565) PV_GBa0048I20.r PV_GBa Phaseolus vulgaris genomic... 48 0.10 1
(EI427733) PV_GBa0018I22.f PV_GBa Phaseolus vulgaris genomic... 48 0.10 1
(BX548030) Zebrafish DNA sequence from clone CH211-194H8 in ... 46 0.41 1
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 46 0.41 1
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 46 0.41 1
(AC187816) Glycine tomentella clone gtd1-136a20, WORKING DRA... 46 0.41 1
(AC163365) Bos taurus clone CH240-141I20, *** SEQUENCING IN ... 46 0.41 1
(ER852311) PPTB090TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 0.41 1
(DH356472) Oryzias latipes Fosmid clone:GOLWFno734_g12, reve... 46 0.41 1
(CZ869380) OC__Ba0267A06.f OC__Ba Oryza coarctata genomic cl... 46 0.41 1
(CZ792764) OC__Ba0160J16.r OC__Ba Oryza coarctata genomic cl... 46 0.41 1
(EE649947) CHEM9814.b1_K06.ab1 CHE(LMS) serpentine sunflower... 32 1.1 2
(EE643581) CHEM3445.b1_J22.ab1 CHE(LMS) serpentine sunflower... 32 1.1 2
(EE648394) CHEM8369.b1_B06.ab1 CHE(LMS) serpentine sunflower... 32 1.1 2
(AJ927391) Theileria annulata EST, clone tam029e11_q1k. 42 1.2 2
(CU179663) Zebrafish DNA sequence from clone DKEY-197I9. 44 1.6 1
(BX465849) Zebrafish DNA sequence from clone DKEY-263L8 in l... 44 1.6 1
(BX005379) Zebrafish DNA sequence from clone DKEY-184P9 in l... 44 1.6 1
(CQ481624) Sequence 13491 from Patent WO0160860. 44 1.6 1
(U56094) Inquilina schwarzi cytochrome b (cyt b) gene, mitoc... 44 1.6 1
(DQ149688) Inquilina sp. Adelaide cytochrome b (cytb) gene, ... 44 1.6 1
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 44 1.6 1
(AJ416819) Inquilina schwarzi partial mitochondrial cytb gen... 44 1.6 1
(AC128985) Rattus norvegicus clone CH230-1F10, *** SEQUENCIN... 44 1.6 1
(AC098229) Rattus norvegicus clone CH230-1F6, *** SEQUENCING... 44 1.6 1
(FP015918) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.6 1
(CU480650) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.6 1
(AC094281) Rattus norvegicus clone CH230-3G23, WORKING DRAFT... 44 1.6 1
(BX957225) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.6 1
(FH616069) CHO_OF4606xf02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 1.6 1
(FH583525) CHO_OF4899xn02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 1.6 1
(FH256014) CHO_OF3224xn23r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1
(FH245474) CHO_OF3127xl23f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1
(FH231606) CHO_OF3413xm02f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1
(FH187374) CHO_OF3435xd06f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1
(FH094337) CHO_OF3004xm05r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1
(ET996815) CHO_OF007xm15f1.ab1 CHO_OF Nicotiana tabacum geno... 44 1.6 1
(ET974942) CHO_OF680xo14f1.ab1 CHO_OF Nicotiana tabacum geno... 44 1.6 1
(ET971552) CHO_OF652xd10r1.ab1 CHO_OF Nicotiana tabacum geno... 44 1.6 1
(EJ863583) 1093018233855 Global-Ocean-Sampling_GS-30-02-01-1... 44 1.6 1
(EJ339491) 1092963505341 Global-Ocean-Sampling_GS-28-01-01-1... 44 1.6 1
(EJ307771) 1095390113403 Global-Ocean-Sampling_GS-27-01-01-1... 44 1.6 1
(EJ100404) 1095467041864 Global-Ocean-Sampling_GS-26-01-01-1... 44 1.6 1
(EJ057260) 1095456037827 Global-Ocean-Sampling_GS-26-01-01-1... 44 1.6 1
(CZ940733) 322603 Tomato EcoRI BAC Library Solanum lycopersi... 44 1.6 1
(EG345173) SAAH-aac63g04.g1 Agen 0058 Schmidtea mediterranea... 44 1.6 1
(DR726994) AGENCOURT_55089341 NIH_ZGC_7 Danio rerio cDNA clo... 44 1.6 1
(DC228759) Plasmodium berghei strain ANKA cDNA clone:SG01339... 44 1.6 1
(EY326593) CAWY11700.fwd CAWY Helobdella robusta Subtracted ... 44 1.6 1
(EY326503) CAWY11646.fwd CAWY Helobdella robusta Subtracted ... 44 1.6 1
(EY324664) CAWY10413.fwd CAWY Helobdella robusta Subtracted ... 44 1.6 1
(CK424003) AUF_IpSto_10_c04 Stomach cDNA library Ictalurus p... 34 2.5 2
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 3.1 2
(EL434157) CHTL1208.b2_O13.ab1 CHT(LMS) Jerusalem artichoke ... 30 4.2 2
(EL470120) CHTS8743.b2_N02.ab1 CHT(LMS) Jerusalem artichoke ... 30 4.2 2
(EL429092) CHCM8310.b1_K14.ab1 CHC(LMS) Texas blueweed Helia... 30 4.2 2
(CU929263) Zebrafish DNA sequence from clone CH1073-116K19 i... 42 6.4 1
(CU306817) Zebrafish DNA sequence from clone CH211-266G18 in... 42 6.4 1
(BX537341) Zebrafish DNA sequence from clone CH211-103C12 in... 42 6.4 1
(BX004799) Zebrafish DNA sequence from clone CH211-176M18 in... 42 6.4 1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 42 6.4 1
(AL670882) Mouse DNA sequence from clone RP23-286G19 on chro... 42 6.4 1
(CU012050) M.truncatula DNA sequence from clone MTH2-31E18 o... 42 6.4 1
(AC146972) Medicago truncatula clone mth2-128d9, complete se... 42 6.4 1
(FB509204) Sequence 799 from Patent EP1961827. 42 6.4 1
(FB508968) Sequence 563 from Patent EP1961827. 42 6.4 1
(DL199948) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE... 42 6.4 1
(DL199712) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE... 42 6.4 1
(CS502740) Sequence 740 from Patent WO2007009755. 42 6.4 1
(CS502418) Sequence 418 from Patent WO2007009755. 42 6.4 1
(CQ787317) Sequence 167 from Patent WO2004020662. 42 6.4 1
(CQ787305) Sequence 155 from Patent WO2004020662. 42 6.4 1
(BD460504) Diagnosis of Diseases Associated with Cell Cycle. 42 6.4 1
(BD452426) Diagnosis of Diseases Associated with Cell Cycle. 42 6.4 1
(AX348819) Sequence 277 from Patent WO0202807. 42 6.4 1
(AX344674) Sequence 99 from Patent WO0200927. 42 6.4 1
(AX344422) Sequence 269 from Patent WO0200926. 42 6.4 1
(AX323742) Sequence 230 from Patent WO0192565. 42 6.4 1
(AX252040) Sequence 301 from Patent WO0168911. 42 6.4 1
(GM996090) Sequence 230 from Patent EP2014776. 42 6.4 1
(AF456863) Cerdistus sp. LRC-2002 28S ribosomal RNA gene, pa... 42 6.4 1
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 42 6.4 1
(AE001379) Plasmodium falciparum 3D7 chromosome 2 section 16... 42 6.4 1
(AC165428) Strongylocentrotus purpuratus BAC clone contig co... 42 6.4 1
(AC098470) Rattus norvegicus clone CH230-2D23, *** SEQUENCIN... 42 6.4 1
(CT583715) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 6.4 1
(AC192693) Ornithorhynchus anatinus clone OA_Bb-161J21, WORK... 42 6.4 1
(AC181035) Strongylocentrotus purpuratus clone R3-3052D17, W... 42 6.4 1
(AC177075) Strongylocentrotus purpuratus clone R3-4004K3, WO... 42 6.4 1
(AC175856) Strongylocentrotus purpuratus clone R3-3038P5, WO... 42 6.4 1
(AC168791) Strongylocentrotus purpuratus clone R3-13J6, WORK... 42 6.4 1
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 42 6.4 1
(FH902765) CHO_ONF011xo06f1.ab1 CHO_ONF Nicotiana tabacum ge... 42 6.4 1
(EK329977) 1095467020150 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1
(EK316357) 1095462414212 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1
(EK287420) 1095462317690 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1
(EK276965) 1095462280849 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1
(EK168008) 1095458061627 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1
(EK167522) 1095458059543 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1
(EJ972035) 1093022089118 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.4 1
(EJ918897) 1093018590139 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.4 1
(EJ819249) 1093017530181 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.4 1
(EJ323154) 1095403435785 Global-Ocean-Sampling_GS-27-01-01-1... 42 6.4 1
(EJ199351) 1092344282903 Global-Ocean-Sampling_GS-27-01-01-1... 42 6.4 1
(EI465423) PV_GBa0071A02.f PV_GBa Phaseolus vulgaris genomic... 42 6.4 1
(ED568449) SBA034_G14.f Sugar beet BAC library USH20 (Code S... 42 6.4 1
(DX529139) GH_MBb0046I21f GH_MBb Gossypium hirsutum genomic ... 42 6.4 1
(CW949992) TcB35.1_B11_SP6 Tribolium BAC library Tribolium c... 42 6.4 1
(CW949724) TcB34.3_G09_SP6 Tribolium BAC library Tribolium c... 42 6.4 1
(CL036161) CH216-41B2_Sp6.1 CH216 Xenopus (Silurana) tropica... 42 6.4 1
(CG770475) TcB41.2_F05_SP6 Tribolium BAC library Tribolium c... 42 6.4 1
(CG745667) P038-3-F07.ya Ppa EcoRI BAC Library Pristionchus ... 42 6.4 1
(AG448626) Mus musculus molossinus DNA, clone:MSMg01-332K10.... 42 6.4 1
(AG310780) Mus musculus molossinus DNA, clone:MSMg01-093E19.... 42 6.4 1
(EL505259) F10_1799_4.AB1 Blood stage Plasmodium falciparum ... 42 6.4 1
(EL494447) C12_PFBAMHI-M-T3-PLATE19A.AB1 Blood stage Plasmod... 42 6.4 1
(DW015669) EST1224630 MTY Medicago truncatula cDNA clone MTY... 42 6.4 1
(DB781363) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 1
(DB771471) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 1
(DB762646) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 1
(DB755367) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 1
(CX528133) s13dNF52B06AT057_516778 Aphid-Infected Shoots Med... 42 6.4 1
(AL368055) Medicago truncatula EST MtBA21H09F1 : T3 end of c... 42 6.4 1
(AJ498614) Medicago truncatula EST, clone mt--acc955206g05. 42 6.4 1
(CB891185) EST648154 KV3 Medicago truncatula cDNA clone KV3-... 42 6.4 1
(BI267798) NF116A09IN1F1069 Insect herbivory Medicago trunca... 42 6.4 1
(BI265435) NF082F04IN1F1043 Insect herbivory Medicago trunca... 42 6.4 1
(BF650883) NF097E12EC1F1097 Elicited cell culture Medicago t... 42 6.4 1
(BF643574) NF089H11EC1F1096 Elicited cell culture Medicago t... 42 6.4 1
(BF642553) NF069H08IN1F1075 Insect herbivory Medicago trunca... 42 6.4 1
(BF518682) EST456133 DSIL Medicago truncatula cDNA clone pDS... 42 6.4 1
(BE942558) EST422137 MGHG Medicago truncatula cDNA clone pMG... 42 6.4 1
(BE942557) EST422136 MGHG Medicago truncatula cDNA clone pMG... 42 6.4 1
(BE942553) EST422132 MGHG Medicago truncatula cDNA clone pMG... 42 6.4 1
(BE324649) NF024E03PL1F1020 Phosphate starved leaf Medicago ... 42 6.4 1
(BE317573) NF051G08LF1F1056 Developing leaf Medicago truncat... 42 6.4 1
(BE248608) NF021H01DT1F1013 Drought Medicago truncatula cDNA... 42 6.4 1
(BE205651) AOB130 Onion seedling leaf cDNA library Allium ce... 42 6.4 1
(BE123873) EST393998 DSIL Medicago truncatula cDNA clone pDS... 42 6.4 1
(GE343381) MEUA062TF JCVI-MT2 Medicago truncatula cDNA 5', m... 42 6.4 1
(EY478081) METB992TF JCVI-MT3 Medicago truncatula cDNA 5', m... 42 6.4 1
(ES612675) MTGland_A023_2007-05-04/MTGlandA023_C10_038_1 Med... 42 6.4 1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 42 6.4 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 42 6.4 1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 42 6.4 1
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 42 6.4 1

>(AU051795) Dictyostelium discoideum slug cDNA, clone SSA352.
Length = 178

Score = 52.0 bits (26), Expect = 0.007
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 1 aattttttatattattaataataatt 26
||||||||||||||||||||||||||
Sbjct: 1 aattttttatattattaataataatt 26

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 68,778,841
Number of extensions: 5940510
Number of successful extensions: 2009804
Number of sequences better than 10.0: 149
Length of query: 177
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 155
Effective length of database: 99,544,435,898
Effective search space: 15429387564190
Effective search space used: 15429387564190
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.17
Homology vs Protein
Query= Contig-U01510-1 (Contig-U01510-1Q) /CSM_Contig/Contig-U01510-1Q.Seq.d
(177 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 16,844,964
Number of extensions: 24697
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 59
Length of database: 1,051,180,864
Length adjustment: 31
Effective length of query: 28
Effective length of database: 950,847,535
Effective search space: 26623730980
Effective search space used: 26623730980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

PSORT

psg: 1.00 gvh: 0.33 alm: 0.27 top: 0.67 tms: 0.07 mit: 0.45 mip: 0.00
nuc: 0.24 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.50 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
8.0 %: plasma membrane
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for Contig-U01510-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0