Contig-U01510-1 |
Contig ID |
Contig-U01510-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
177 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U01510 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6. 7 |
Homology vs CSM-cDNA |
|
dna update |
2009. 4.29 |
Homology vs DNA |
Query= Contig-U01510-1 (Contig-U01510-1Q) /CSM_Contig/Contig-U01510-1Q.Seq.d (177 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU051795) Dictyostelium discoideum slug cDNA, clone SSA352. 52 0.007 1 (AC142420) Rattus norvegicus clone CH230-262M24, WORKING DRA... 48 0.10 1 (EI449565) PV_GBa0048I20.r PV_GBa Phaseolus vulgaris genomic... 48 0.10 1 (EI427733) PV_GBa0018I22.f PV_GBa Phaseolus vulgaris genomic... 48 0.10 1 (BX548030) Zebrafish DNA sequence from clone CH211-194H8 in ... 46 0.41 1 (EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 46 0.41 1 (AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 46 0.41 1 (AC187816) Glycine tomentella clone gtd1-136a20, WORKING DRA... 46 0.41 1 (AC163365) Bos taurus clone CH240-141I20, *** SEQUENCING IN ... 46 0.41 1 (ER852311) PPTB090TF Solanum tuberosum RHPOTKEY BAC ends Sol... 46 0.41 1 (DH356472) Oryzias latipes Fosmid clone:GOLWFno734_g12, reve... 46 0.41 1 (CZ869380) OC__Ba0267A06.f OC__Ba Oryza coarctata genomic cl... 46 0.41 1 (CZ792764) OC__Ba0160J16.r OC__Ba Oryza coarctata genomic cl... 46 0.41 1 (EE649947) CHEM9814.b1_K06.ab1 CHE(LMS) serpentine sunflower... 32 1.1 2 (EE643581) CHEM3445.b1_J22.ab1 CHE(LMS) serpentine sunflower... 32 1.1 2 (EE648394) CHEM8369.b1_B06.ab1 CHE(LMS) serpentine sunflower... 32 1.1 2 (AJ927391) Theileria annulata EST, clone tam029e11_q1k. 42 1.2 2 (CU179663) Zebrafish DNA sequence from clone DKEY-197I9. 44 1.6 1 (BX465849) Zebrafish DNA sequence from clone DKEY-263L8 in l... 44 1.6 1 (BX005379) Zebrafish DNA sequence from clone DKEY-184P9 in l... 44 1.6 1 (CQ481624) Sequence 13491 from Patent WO0160860. 44 1.6 1 (U56094) Inquilina schwarzi cytochrome b (cyt b) gene, mitoc... 44 1.6 1 (DQ149688) Inquilina sp. Adelaide cytochrome b (cytb) gene, ... 44 1.6 1 (CR548612) Paramecium tetraurelia macronuclear largest chrom... 44 1.6 1 (AJ416819) Inquilina schwarzi partial mitochondrial cytb gen... 44 1.6 1 (AC128985) Rattus norvegicus clone CH230-1F10, *** SEQUENCIN... 44 1.6 1 (AC098229) Rattus norvegicus clone CH230-1F6, *** SEQUENCING... 44 1.6 1 (FP015918) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.6 1 (CU480650) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.6 1 (AC094281) Rattus norvegicus clone CH230-3G23, WORKING DRAFT... 44 1.6 1 (BX957225) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.6 1 (FH616069) CHO_OF4606xf02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 1.6 1 (FH583525) CHO_OF4899xn02f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 1.6 1 (FH256014) CHO_OF3224xn23r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1 (FH245474) CHO_OF3127xl23f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1 (FH231606) CHO_OF3413xm02f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1 (FH187374) CHO_OF3435xd06f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1 (FH094337) CHO_OF3004xm05r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 1.6 1 (ET996815) CHO_OF007xm15f1.ab1 CHO_OF Nicotiana tabacum geno... 44 1.6 1 (ET974942) CHO_OF680xo14f1.ab1 CHO_OF Nicotiana tabacum geno... 44 1.6 1 (ET971552) CHO_OF652xd10r1.ab1 CHO_OF Nicotiana tabacum geno... 44 1.6 1 (EJ863583) 1093018233855 Global-Ocean-Sampling_GS-30-02-01-1... 44 1.6 1 (EJ339491) 1092963505341 Global-Ocean-Sampling_GS-28-01-01-1... 44 1.6 1 (EJ307771) 1095390113403 Global-Ocean-Sampling_GS-27-01-01-1... 44 1.6 1 (EJ100404) 1095467041864 Global-Ocean-Sampling_GS-26-01-01-1... 44 1.6 1 (EJ057260) 1095456037827 Global-Ocean-Sampling_GS-26-01-01-1... 44 1.6 1 (CZ940733) 322603 Tomato EcoRI BAC Library Solanum lycopersi... 44 1.6 1 (EG345173) SAAH-aac63g04.g1 Agen 0058 Schmidtea mediterranea... 44 1.6 1 (DR726994) AGENCOURT_55089341 NIH_ZGC_7 Danio rerio cDNA clo... 44 1.6 1 (DC228759) Plasmodium berghei strain ANKA cDNA clone:SG01339... 44 1.6 1 (EY326593) CAWY11700.fwd CAWY Helobdella robusta Subtracted ... 44 1.6 1 (EY326503) CAWY11646.fwd CAWY Helobdella robusta Subtracted ... 44 1.6 1 (EY324664) CAWY10413.fwd CAWY Helobdella robusta Subtracted ... 44 1.6 1 (CK424003) AUF_IpSto_10_c04 Stomach cDNA library Ictalurus p... 34 2.5 2 (AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 3.1 2 (EL434157) CHTL1208.b2_O13.ab1 CHT(LMS) Jerusalem artichoke ... 30 4.2 2 (EL470120) CHTS8743.b2_N02.ab1 CHT(LMS) Jerusalem artichoke ... 30 4.2 2 (EL429092) CHCM8310.b1_K14.ab1 CHC(LMS) Texas blueweed Helia... 30 4.2 2 (CU929263) Zebrafish DNA sequence from clone CH1073-116K19 i... 42 6.4 1 (CU306817) Zebrafish DNA sequence from clone CH211-266G18 in... 42 6.4 1 (BX537341) Zebrafish DNA sequence from clone CH211-103C12 in... 42 6.4 1 (BX004799) Zebrafish DNA sequence from clone CH211-176M18 in... 42 6.4 1 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 42 6.4 1 (AL670882) Mouse DNA sequence from clone RP23-286G19 on chro... 42 6.4 1 (CU012050) M.truncatula DNA sequence from clone MTH2-31E18 o... 42 6.4 1 (AC146972) Medicago truncatula clone mth2-128d9, complete se... 42 6.4 1 (FB509204) Sequence 799 from Patent EP1961827. 42 6.4 1 (FB508968) Sequence 563 from Patent EP1961827. 42 6.4 1 (DL199948) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE... 42 6.4 1 (DL199712) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE... 42 6.4 1 (CS502740) Sequence 740 from Patent WO2007009755. 42 6.4 1 (CS502418) Sequence 418 from Patent WO2007009755. 42 6.4 1 (CQ787317) Sequence 167 from Patent WO2004020662. 42 6.4 1 (CQ787305) Sequence 155 from Patent WO2004020662. 42 6.4 1 (BD460504) Diagnosis of Diseases Associated with Cell Cycle. 42 6.4 1 (BD452426) Diagnosis of Diseases Associated with Cell Cycle. 42 6.4 1 (AX348819) Sequence 277 from Patent WO0202807. 42 6.4 1 (AX344674) Sequence 99 from Patent WO0200927. 42 6.4 1 (AX344422) Sequence 269 from Patent WO0200926. 42 6.4 1 (AX323742) Sequence 230 from Patent WO0192565. 42 6.4 1 (AX252040) Sequence 301 from Patent WO0168911. 42 6.4 1 (GM996090) Sequence 230 from Patent EP2014776. 42 6.4 1 (AF456863) Cerdistus sp. LRC-2002 28S ribosomal RNA gene, pa... 42 6.4 1 (AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 42 6.4 1 (AE001379) Plasmodium falciparum 3D7 chromosome 2 section 16... 42 6.4 1 (AC165428) Strongylocentrotus purpuratus BAC clone contig co... 42 6.4 1 (AC098470) Rattus norvegicus clone CH230-2D23, *** SEQUENCIN... 42 6.4 1 (CT583715) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 6.4 1 (AC192693) Ornithorhynchus anatinus clone OA_Bb-161J21, WORK... 42 6.4 1 (AC181035) Strongylocentrotus purpuratus clone R3-3052D17, W... 42 6.4 1 (AC177075) Strongylocentrotus purpuratus clone R3-4004K3, WO... 42 6.4 1 (AC175856) Strongylocentrotus purpuratus clone R3-3038P5, WO... 42 6.4 1 (AC168791) Strongylocentrotus purpuratus clone R3-13J6, WORK... 42 6.4 1 (AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 42 6.4 1 (FH902765) CHO_ONF011xo06f1.ab1 CHO_ONF Nicotiana tabacum ge... 42 6.4 1 (EK329977) 1095467020150 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1 (EK316357) 1095462414212 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1 (EK287420) 1095462317690 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1 (EK276965) 1095462280849 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1 (EK168008) 1095458061627 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1 (EK167522) 1095458059543 Global-Ocean-Sampling_GS-31-01-01-1... 42 6.4 1 (EJ972035) 1093022089118 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.4 1 (EJ918897) 1093018590139 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.4 1 (EJ819249) 1093017530181 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.4 1 (EJ323154) 1095403435785 Global-Ocean-Sampling_GS-27-01-01-1... 42 6.4 1 (EJ199351) 1092344282903 Global-Ocean-Sampling_GS-27-01-01-1... 42 6.4 1 (EI465423) PV_GBa0071A02.f PV_GBa Phaseolus vulgaris genomic... 42 6.4 1 (ED568449) SBA034_G14.f Sugar beet BAC library USH20 (Code S... 42 6.4 1 (DX529139) GH_MBb0046I21f GH_MBb Gossypium hirsutum genomic ... 42 6.4 1 (CW949992) TcB35.1_B11_SP6 Tribolium BAC library Tribolium c... 42 6.4 1 (CW949724) TcB34.3_G09_SP6 Tribolium BAC library Tribolium c... 42 6.4 1 (CL036161) CH216-41B2_Sp6.1 CH216 Xenopus (Silurana) tropica... 42 6.4 1 (CG770475) TcB41.2_F05_SP6 Tribolium BAC library Tribolium c... 42 6.4 1 (CG745667) P038-3-F07.ya Ppa EcoRI BAC Library Pristionchus ... 42 6.4 1 (AG448626) Mus musculus molossinus DNA, clone:MSMg01-332K10.... 42 6.4 1 (AG310780) Mus musculus molossinus DNA, clone:MSMg01-093E19.... 42 6.4 1 (EL505259) F10_1799_4.AB1 Blood stage Plasmodium falciparum ... 42 6.4 1 (EL494447) C12_PFBAMHI-M-T3-PLATE19A.AB1 Blood stage Plasmod... 42 6.4 1 (DW015669) EST1224630 MTY Medicago truncatula cDNA clone MTY... 42 6.4 1 (DB781363) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 1 (DB771471) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 1 (DB762646) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 1 (DB755367) Apis mellifera head cDNA, RIKEN full-length enric... 42 6.4 1 (CX528133) s13dNF52B06AT057_516778 Aphid-Infected Shoots Med... 42 6.4 1 (AL368055) Medicago truncatula EST MtBA21H09F1 : T3 end of c... 42 6.4 1 (AJ498614) Medicago truncatula EST, clone mt--acc955206g05. 42 6.4 1 (CB891185) EST648154 KV3 Medicago truncatula cDNA clone KV3-... 42 6.4 1 (BI267798) NF116A09IN1F1069 Insect herbivory Medicago trunca... 42 6.4 1 (BI265435) NF082F04IN1F1043 Insect herbivory Medicago trunca... 42 6.4 1 (BF650883) NF097E12EC1F1097 Elicited cell culture Medicago t... 42 6.4 1 (BF643574) NF089H11EC1F1096 Elicited cell culture Medicago t... 42 6.4 1 (BF642553) NF069H08IN1F1075 Insect herbivory Medicago trunca... 42 6.4 1 (BF518682) EST456133 DSIL Medicago truncatula cDNA clone pDS... 42 6.4 1 (BE942558) EST422137 MGHG Medicago truncatula cDNA clone pMG... 42 6.4 1 (BE942557) EST422136 MGHG Medicago truncatula cDNA clone pMG... 42 6.4 1 (BE942553) EST422132 MGHG Medicago truncatula cDNA clone pMG... 42 6.4 1 (BE324649) NF024E03PL1F1020 Phosphate starved leaf Medicago ... 42 6.4 1 (BE317573) NF051G08LF1F1056 Developing leaf Medicago truncat... 42 6.4 1 (BE248608) NF021H01DT1F1013 Drought Medicago truncatula cDNA... 42 6.4 1 (BE205651) AOB130 Onion seedling leaf cDNA library Allium ce... 42 6.4 1 (BE123873) EST393998 DSIL Medicago truncatula cDNA clone pDS... 42 6.4 1 (GE343381) MEUA062TF JCVI-MT2 Medicago truncatula cDNA 5', m... 42 6.4 1 (EY478081) METB992TF JCVI-MT3 Medicago truncatula cDNA 5', m... 42 6.4 1 (ES612675) MTGland_A023_2007-05-04/MTGlandA023_C10_038_1 Med... 42 6.4 1 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 42 6.4 1 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 42 6.4 1 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 42 6.4 1 (CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 42 6.4 1
>(AU051795) Dictyostelium discoideum slug cDNA, clone SSA352. Length = 178
Score = 52.0 bits (26), Expect = 0.007 Identities = 26/26 (100%) Strand = Plus / Plus
Query: 1 aattttttatattattaataataatt 26 |||||||||||||||||||||||||| Sbjct: 1 aattttttatattattaataataatt 26
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 68,778,841 Number of extensions: 5940510 Number of successful extensions: 2009804 Number of sequences better than 10.0: 149 Length of query: 177 Length of database: 101,790,757,118 Length adjustment: 22 Effective length of query: 155 Effective length of database: 99,544,435,898 Effective search space: 15429387564190 Effective search space used: 15429387564190 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 7.17 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |