>Contig-U08617-1 (Contig-U08617-1Q) /CSM_Contig/Contig-U08617-1Q.Seq.d
TGTTGGCCTACTGGGTTTCAAAAATCAAATTTGTTAACTTCATTTTATAA
ATAATAATAATTAATATTACAAAATGATTAAAACAACAACATCATCATCA
TCATCAACAAGTAATAGTAATTGTGAATTATTTTTTAATTGTTGGAGGAA
TGAAATAATTTTAAATAAAATATTATTTCACACAAGATTATTTAATGTTC
ACACCACAATGAAAATGACAATAGATCAATATTCAACATATAAATACAAA
AGTTATATTGAAAATTTAATATTTGCAAATTATGAAGAAGATTCAGATTT
AAAACTAAATAATGTAATTGTAAAAGAATTAAATAAAAGTGGCACCACCA
CTACACCGCCAACATCACCAACATCACCAACGCCAACACCAACGCCAACA
CCAACATCAATGTAAATTATCAGAATTACTAGTAGTAAATAACGATAAAG
AACANGAAAGTAATAGTATATTCCCATATTCAATTAAATCTATTATTTTC
AATGATAAATTTAATGAAGTTATGGATAATGTTAAATTATT---------
-CTTTACCAGCCTNGCTTGGCTCCATTAAATTTGGAAGCAAGTTTAATCA
ACCTTTGAATGGTGATTTCCAGCTATGTGTACTACCACCAAATTTAACCA
ATTTAGAATTTGGATTGGAGTTTAACCAAAGTTTGACCGCCGCAATGCTA
CCCTCGTCATTGACTTGCCTCAAATTTGGTGATAATTTCAATCCACCGCT
TTCCACTTCCTCGATGTCTGCTTTATTCTTGCATACGAATTTGGTATCTT
TAGAATTTGGTAAACAATTTAAAAATGTGATTCCAATAAATACATTACCA
AAATCATTAAAACATTTAAATTTGGGTGGTTTTAATGATAATTTATCAAT
TATTAAGGATTCATTGGATTGTACCTCATTGGAATCATTGGTATTGGATA
ATTTCAATCAGTATATTAAACCTGCTGATTTACCACCGACTTTGACATCA
TTACAATTAGGTATTACATTTGATAAACCAATTGGTAAAGATGTACTTCC
AAATTCTTTAAAAATATTAGAAATTAAAAATTCAAAATATTCTCATCAGT
TATATCAAATTAATTTACCAAAATCATTAGATAAATTAATAATTCATTTT
GGTAATGTTAATTTATTAAATAATTTTACTGCTGATTATTTTATAATAAA
ATTTTAAAATAAAA

est1=AFA228F,1,542
est2=AFA228Z,543,1206

laywvskikfvnfil*iiiinitk*lkqqhhhhhqqvivivnyflivggmk*f*ikyyft
qdylmftpq*k*q*iniqhintkvilki*ylqimkkiqi*n*im*l*kn*IKVAPPLHRQ
HHQHHQRQHQRQHQHQCKLSELLVVNNDKEXESNSIFPYSIKSIIFNDKFNEVMDNVKL-
--

---LPAXLGSIKFGSKFNQPLNGDFQLCVLPPNLTNLEFGLEFNQSLTAAMLPSSLTCLK
FGDNFNPPLSTSSMSALFLHTNLVSLEFGKQFKNVIPINTLPKSLKHLNLGGFNDNLSII
KDSLDCTSLESLVLDNFNQYIKPADLPPTLTSLQLGITFDKPIGKDVLPNSLKILEIKNS
KYSHQLYQINLPKSLDKLIIHFGNVNLLNNFTADYFIIKF*nk

Frame A:
cwptgfqksnlltsfyk***lilqnd*nnniiiiink***l*iif*llee*nnfk*niis
hkii*cshhnendnrsifni*iqkly*kfnickl*rrfrfktk*cnckrik*kwhhhyta
nitnitnantnantninvnyqny***itiknxkvivyshiqlnllfsminlmklwimlny
---

---lyqpxlaplnleaslinl*mvissyvyyhqi*pi*nldwsltkv*ppqcyprh*las
nlviisihrfplprcllysciriwyl*nlvnnlkm*fq*ihyqnh*ni*iwvvlmiiyql
lrihwivphwnhwywiisisilnlliyhrl*hhyn*vlhlinqlvkmyfqil*ky*klki
qnilisyikliyqnh*in**filvmliy*iillliil**nfkik

Frame B:
vgllgfknqic*lhfinnnn*yykmiktttssssstsnsncelffncwrneiilnkilfh
trlfnvhttmkmtidqystykyksyienlifanyeedsdlklnnvivkelnksgttttpp
tsptsptptptptptsm*iiritssk*r*rtxk**yipifn*iyyfq**i**syg*c*ii
---

---ftslawlh*iwkqv*stfew*fpamctttkfnqfriwigv*pkfdrrnatlvidlpq
iw**fqstafhfldvcfilayefgifriw*ti*kcdsnkyitkiiktfkfgwf***finy
*gfiglyligiigig*fqsvy*tc*fttdfdiitiryyi**tnw*rctskffknirn*kf
kifssvisn*ftkiir*innsfw*c*fik*fyc*lfynkilk*

Frame C:
laywvskikfvnfil*iiiinitk*lkqqhhhhhqqvivivnyflivggmk*f*ikyyft
qdylmftpq*k*q*iniqhintkvilki*ylqimkkiqi*n*im*l*kn*IKVAPPLHRQ
HHQHHQRQHQRQHQHQCKLSELLVVNNDKEXESNSIFPYSIKSIIFNDKFNEVMDNVKL-
--

---LPAXLGSIKFGSKFNQPLNGDFQLCVLPPNLTNLEFGLEFNQSLTAAMLPSSLTCLK
FGDNFNPPLSTSSMSALFLHTNLVSLEFGKQFKNVIPINTLPKSLKHLNLGGFNDNLSII
KDSLDCTSLESLVLDNFNQYIKPADLPPTLTSLQLGITFDKPIGKDVLPNSLKILEIKNS
KYSHQLYQINLPKSLDKLIIHFGNVNLLNNFTADYFIIKF*nk

Query= Contig-U08617-1 (Contig-U08617-1Q)
/CSM_Contig/Contig-U08617-1Q.Seq.d
         (1214 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08617-1 (Contig-U08617-1Q) /CSM_Contig/Conti...  1400  0.0
Contig-U12113-1 (Contig-U12113-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U11722-1 (Contig-U11722-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12843-1 (Contig-U12843-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12728-1 (Contig-U12728-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12182-1 (Contig-U12182-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U06683-1 (Contig-U06683-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U01839-1 (Contig-U01839-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14198-1 (Contig-U14198-1Q) /CSM_Contig/Conti...    38  0.022

>Contig-U08617-1 (Contig-U08617-1Q) /CSM_Contig/Contig-U08617-1Q.Seq.d
          Length = 1214

 Score = 1400 bits (706), Expect = 0.0
 Identities = 742/742 (100%)
 Strand = Plus / Plus

                                                                        
Query: 411  tgtaaattatcagaattactagtagtaaataacgataaagaacangaaagtaatagtata 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411  tgtaaattatcagaattactagtagtaaataacgataaagaacangaaagtaatagtata 470

                                                                        
Query: 471  ttcccatattcaattaaatctattattttcaatgataaatttaatgaagttatggataat 530
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  ttcccatattcaattaaatctattattttcaatgataaatttaatgaagttatggataat 530

                                                                        
Query: 531  gttaaattattnnnnnnnnnnctttaccagcctngcttggctccattaaatttggaagca 590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531  gttaaattattnnnnnnnnnnctttaccagcctngcttggctccattaaatttggaagca 590

                                                                        
Query: 591  agtttaatcaacctttgaatggtgatttccagctatgtgtactaccaccaaatttaacca 650
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  agtttaatcaacctttgaatggtgatttccagctatgtgtactaccaccaaatttaacca 650

                                                                        
Query: 651  atttagaatttggattggagtttaaccaaagtttgaccgccgcaatgctaccctcgtcat 710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651  atttagaatttggattggagtttaaccaaagtttgaccgccgcaatgctaccctcgtcat 710

                                                                        
Query: 711  tgacttgcctcaaatttggtgataatttcaatccaccgctttccacttcctcgatgtctg 770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711  tgacttgcctcaaatttggtgataatttcaatccaccgctttccacttcctcgatgtctg 770

                                                                        
Query: 771  ctttattcttgcatacgaatttggtatctttagaatttggtaaacaatttaaaaatgtga 830
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771  ctttattcttgcatacgaatttggtatctttagaatttggtaaacaatttaaaaatgtga 830

                                                                        
Query: 831  ttccaataaatacattaccaaaatcattaaaacatttaaatttgggtggttttaatgata 890
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831  ttccaataaatacattaccaaaatcattaaaacatttaaatttgggtggttttaatgata 890

                                                                        
Query: 891  atttatcaattattaaggattcattggattgtacctcattggaatcattggtattggata 950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  atttatcaattattaaggattcattggattgtacctcattggaatcattggtattggata 950

                                                                        
Query: 951  atttcaatcagtatattaaacctgctgatttaccaccgactttgacatcattacaattag 1010
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951  atttcaatcagtatattaaacctgctgatttaccaccgactttgacatcattacaattag 1010

                                                                        
Query: 1011 gtattacatttgataaaccaattggtaaagatgtacttccaaattctttaaaaatattag 1070
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 gtattacatttgataaaccaattggtaaagatgtacttccaaattctttaaaaatattag 1070

                                                                        
Query: 1071 aaattaaaaattcaaaatattctcatcagttatatcaaattaatttaccaaaatcattag 1130
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 aaattaaaaattcaaaatattctcatcagttatatcaaattaatttaccaaaatcattag 1130

                                  
Query: 1131 ataaattaataattcattttgg 1152
            ||||||||||||||||||||||
Sbjct: 1131 ataaattaataattcattttgg 1152


 Score =  488 bits (246), Expect = e-138
 Identities = 246/246 (100%)
 Strand = Plus / Plus

                                                                       
Query: 107 acaagtaatagtaattgtgaattattttttaattgttggaggaatgaaataattttaaat 166
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 acaagtaatagtaattgtgaattattttttaattgttggaggaatgaaataattttaaat 166

                                                                       
Query: 167 aaaatattatttcacacaagattatttaatgttcacaccacaatgaaaatgacaatagat 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aaaatattatttcacacaagattatttaatgttcacaccacaatgaaaatgacaatagat 226

                                                                       
Query: 227 caatattcaacatataaatacaaaagttatattgaaaatttaatatttgcaaattatgaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 caatattcaacatataaatacaaaagttatattgaaaatttaatatttgcaaattatgaa 286

                                                                       
Query: 287 gaagattcagatttaaaactaaataatgtaattgtaaaagaattaaataaaagtggcacc 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gaagattcagatttaaaactaaataatgtaattgtaaaagaattaaataaaagtggcacc 346

                 
Query: 347 accact 352
           ||||||
Sbjct: 347 accact 352


 Score =  176 bits (89), Expect = 4e-44
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgttggcctactgggtttcaaaaatcaaatttgttaacttcattttataaataataataa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgttggcctactgggtttcaaaaatcaaatttgttaacttcattttataaataataataa 60

                                       
Query: 61 ttaatattacaaaatgattaaaacaacaa 89
          |||||||||||||||||||||||||||||
Sbjct: 61 ttaatattacaaaatgattaaaacaacaa 89


>Contig-U12113-1 (Contig-U12113-1Q) /CSM_Contig/Contig-U12113-1Q.Seq.d
          Length = 1344

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 43 ttttataaataataataattaa 64
          ||||||||||||||||||||||
Sbjct: 52 ttttataaataataataattaa 73


>Contig-U11722-1 (Contig-U11722-1Q) /CSM_Contig/Contig-U11722-1Q.Seq.d
          Length = 978

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 49 aaataataataattaatatta 69
          |||||||||||||||||||||
Sbjct: 49 aaataataataattaatatta 29


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,389
Number of Sequences: 6905
Number of extensions: 42389
Number of successful extensions: 6307
Number of sequences better than 10.0: 808
length of query: 1214
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1198
effective length of database: 5,564,391
effective search space: 6666140418
effective search space used: 6666140418
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U08617-1 (Contig-U08617-1Q) /CSM_Contig/Contig-U08617-1Q.Seq.d
         (1214 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ342722) Dictyostelium discoideum cDNA clone:dda1g08, 3' e...   983   0.0    1
(BJ325542) Dictyostelium discoideum cDNA clone:dda1g08, 5' e...   468   0.0    3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    38   1e-05  14
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   1e-05  12
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    46   6e-05  12
(AM180355) Clostridium difficile 630 complete genome.              44   8e-05  19
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   2e-04  17
(DD010736) Diagnosis of known genetic Parameters within the ...    48   3e-04  2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    44   4e-04  18
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    40   6e-04  11
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    46   9e-04  8
(AL844507) Plasmodium falciparum chromosome 8.                     36   0.001  15
(CS592337) Sequence 31 from Patent WO2007039128.                   42   0.002  6
(CS592321) Sequence 15 from Patent WO2007039128.                   42   0.002  6
(BJ327297) Dictyostelium discoideum cDNA clone:dda19n20, 5' ...    42   0.002  3
(AL844509) Plasmodium falciparum chromosome 13.                    42   0.003  9
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.003  13
(EI342853) GM_WBc0087G10.r GM_WBc Glycine max genomic clone ...    44   0.004  2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   0.006  16
(CP000727) Clostridium botulinum A str. Hall, complete genome.     36   0.008  17
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    38   0.010  19
(ER517444) 1093015526791 Global-Ocean-Sampling_GS-35-01-01-1...    40   0.010  3
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    36   0.011  17
(AC133762) Rattus norvegicus clone CH230-171O21, *** SEQUENC...    38   0.011  7
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g...    36   0.012  17
(EK359776) 1095468908541 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.013  3
(AC182682) Populus trichocarpa clone Pop1-33J5, complete seq...    34   0.015  8
(ER512119) 1093015456845 Global-Ocean-Sampling_GS-35-01-01-1...    40   0.015  3
(BJ327708) Dictyostelium discoideum cDNA clone:dda21p07, 5' ...    34   0.018  4
(AX344551) Sequence 2 from Patent WO0200932.                       34   0.018  14
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.019  12
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.019  23
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co...    36   0.020  8
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   0.021  15
(AM435108) Vitis vinifera contig VV78X148368.7, whole genome...    34   0.021  6
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    42   0.021  12
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   0.031  17
(AC010060) Drosophila melanogaster 3L BAC RP98-22J22 (Roswel...    40   0.036  7
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    36   0.042  18
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       34   0.047  13
(AC105694) Rattus norvegicus clone CH230-122G1, *** SEQUENCI...    52   0.050  1
(EI473191) PV_GBa0082I23.f PV_GBa Phaseolus vulgaris genomic...    52   0.050  1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   0.052  8
(CT027660) Medicago truncatula chromosome 5 clone mth4-7a11,...    38   0.056  5
(AC124542) Mus musculus BAC clone RP23-259B10 from 12, compl...    42   0.063  7
(CR548612) Paramecium tetraurelia macronuclear largest chrom...    38   0.065  18
(AM475822) Vitis vinifera, whole genome shotgun sequence, co...    40   0.067  4
(CS592331) Sequence 25 from Patent WO2007039128.                   42   0.067  6
(CS592315) Sequence 9 from Patent WO2007039128.                    42   0.067  6
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    34   0.068  11
(AL844506) Plasmodium falciparum chromosome  7.                    40   0.069  12
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    36   0.076  11
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    36   0.080  13
(CR354537) Zebrafish DNA sequence from clone DKEY-12E8 in li...    34   0.089  6
(CP000382) Clostridium novyi NT, complete genome.                  40   0.092  19
(AY217738) Eimeria tenella apicoplast, complete genome.            34   0.099  8
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    40   0.10   7
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         34   0.11   11
(EU009274) Phausis reticulata 16S ribosomal RNA gene, partia...    44   0.11   3
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    38   0.12   18
(CU424444) Zebrafish DNA sequence from clone CH211-149A19 in...    36   0.12   2
(AL929343) Zebrafish DNA sequence from clone CH211-144G12.         40   0.12   8
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    34   0.12   8
(BX649301) Zebrafish DNA sequence from clone DKEY-208D13 in ...    36   0.13   6
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    38   0.14   9
(AM285325) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   0.14   4
(AY572538) Aleurochiton aceris mitochondrion, complete genome.     38   0.14   6
(EU005541) Styringomyia didyma voucher O'Grady 202001 tRNA-M...    32   0.15   4
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   0.15   11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   0.16   16
(AC210138) Populus trichocarpa clone POP112-C17, complete se...    40   0.16   5
(EH211872) USDA-FP_174666 WHMH (pink hibiscus mealybug) Maco...    34   0.17   3
(CT955984) Zebrafish DNA sequence from clone CH73-165P10 in ...    48   0.17   5
(AE017197) Rickettsia typhi str. Wilmington complete genome.       38   0.17   15
(BX324152) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.17   6
(CR391972) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.17   4
(ER344372) 1092344370473 Global-Ocean-Sampling_GS-34-01-01-1...    40   0.17   3
(AM285312) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   0.18   5
(EH217550) USDA-FP_180345 WHMH (pink hibiscus mealybug) Maco...    34   0.18   3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    42   0.19   14
(AF083424) Ateline herpesvirus 3 complete genome.                  50   0.20   1
(AM469528) Vitis vinifera contig VV78X134132.6, whole genome...    50   0.20   1
(DD164553) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              50   0.20   1
(CS788973) Sequence 229 from Patent WO2005031001.                  50   0.20   1
(AX695773) Sequence 1400 from Patent WO03008583.                   50   0.20   1
(AC069387) Homo sapiens BAC clone RP11-295G11 from 2, comple...    50   0.20   1
(CU469262) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.20   1
(CU469241) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.20   1
(AC011993) Homo sapiens chromosome 2 clone RP11-5F23, WORKIN...    50   0.20   1
(EI679716) SB_BBd10-N16.F SB_BBd Sorghum bicolor genomic 5',...    50   0.20   1
(ED694514) GM_WBb0033D18.f GM_WBb Glycine max genomic clone ...    50   0.20   1
(DX980056) SBA007_K07.r Sugar beet BAC library USH20 (Code S...    50   0.20   1
(CW545758) OA_ABa0061G03.f OA_ABa Oryza australiensis genomi...    50   0.20   1
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ...    50   0.20   1
(CU183096) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   0.20   10
(EJ747763) 1092963012820 Global-Ocean-Sampling_GS-30-02-01-1...    46   0.20   2
(CR385043) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    34   0.20   7
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.21   14
(EH211990) USDA-FP_174782 WHMH (pink hibiscus mealybug) Maco...    34   0.22   3
(EH212806) USDA-FP_175590 WHMH (pink hibiscus mealybug) Maco...    34   0.22   3

>(BJ342722) Dictyostelium discoideum cDNA clone:dda1g08, 3' end,
            single read.
          Length = 664

 Score =  983 bits (496), Expect = 0.0
 Identities = 499/499 (100%)
 Strand = Plus / Minus


Query: 552  ctttaccagcctngcttggctccattaaatttggaagcaagtttaatcaacctttgaatg 611
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664  ctttaccagcctngcttggctccattaaatttggaagcaagtttaatcaacctttgaatg 605


Query: 612  gtgatttccagctatgtgtactaccaccaaatttaaccaatttagaatttggattggagt 671
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604  gtgatttccagctatgtgtactaccaccaaatttaaccaatttagaatttggattggagt 545


Query: 672  ttaaccaaagtttgaccgccgcaatgctaccctcgtcattgacttgcctcaaatttggtg 731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544  ttaaccaaagtttgaccgccgcaatgctaccctcgtcattgacttgcctcaaatttggtg 485


Query: 732  ataatttcaatccaccgctttccacttcctcgatgtctgctttattcttgcatacgaatt 791
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484  ataatttcaatccaccgctttccacttcctcgatgtctgctttattcttgcatacgaatt 425


Query: 792  tggtatctttagaatttggtaaacaatttaaaaatgtgattccaataaatacattaccaa 851
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424  tggtatctttagaatttggtaaacaatttaaaaatgtgattccaataaatacattaccaa 365


Query: 852  aatcattaaaacatttaaatttgggtggttttaatgataatttatcaattattaaggatt 911
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364  aatcattaaaacatttaaatttgggtggttttaatgataatttatcaattattaaggatt 305


Query: 912  cattggattgtacctcattggaatcattggtattggataatttcaatcagtatattaaac 971
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304  cattggattgtacctcattggaatcattggtattggataatttcaatcagtatattaaac 245


Query: 972  ctgctgatttaccaccgactttgacatcattacaattaggtattacatttgataaaccaa 1031
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244  ctgctgatttaccaccgactttgacatcattacaattaggtattacatttgataaaccaa 185


Query: 1032 ttggtaaagatgtacttcc 1050
            |||||||||||||||||||
Sbjct: 184  ttggtaaagatgtacttcc 166

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,358,966,485
Number of extensions: 96283752
Number of successful extensions: 9544911
Number of sequences better than 10.0: 801
Length of query: 1214
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1190
Effective length of database: 97,308,875,965
Effective search space: 115797562398350
Effective search space used: 115797562398350
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U08617-1 (Contig-U08617-1Q) /CSM_Contig/Contig-U08617-1Q.Seq.d
         (1214 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosom...   131   4e-29
AC117176_63(AC117176|pid:none) Dictyostelium discoideum chromoso...    98   5e-19
AC116984_119(AC116984|pid:none) Dictyostelium discoideum chromos...    95   4e-18
(Q86AH2) RecName: Full=FNIP repeat-containing protein DDB_G02719...    95   4e-18
AC116960_34(AC116960|pid:none) Dictyostelium discoideum chromoso...    94   7e-18
(Q556H2) RecName: Full=FNIP repeat-containing protein DDB_G02740...    91   1e-16
(Q5UPD4) RecName: Full=Putative F-box and FNIP repeat-containing...    87   9e-16
AC116305_136(AC116305|pid:none) Dictyostelium discoideum chromos...    80   3e-15
AC116986_27(AC116986|pid:none) Dictyostelium discoideum chromoso...    86   3e-15
AC114258_18(AC114258|pid:none) Dictyostelium discoideum chromoso...    83   2e-14
AC116984_17(AC116984|pid:none) Dictyostelium discoideum chromoso...    81   6e-14
(Q8T126) RecName: Full=Probable inactive serine/threonine-protei...    79   3e-13
(Q54JC0) RecName: Full=Calmodulin-binding protein CmbB; AltName:...    78   7e-13
AC116984_124(AC116984|pid:none) Dictyostelium discoideum chromos...    76   1e-12
AC116960_62(AC116960|pid:none) Dictyostelium discoideum chromoso...    77   2e-12
(Q1ZXK1) RecName: Full=FNIP repeat-containing protein DDB_G02773...    72   4e-11
AC116977_30(AC116977|pid:none) Dictyostelium discoideum chromoso...    71   9e-11
AC116957_83(AC116957|pid:none) Dictyostelium discoideum chromoso...    65   2e-09
(Q5UR85) RecName: Full=Putative FNIP repeat-containing protein R...    65   2e-09
AC116957_4(AC116957|pid:none) Dictyostelium discoideum chromosom...    64   8e-09
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    62   2e-08
AC116957_13(AC116957|pid:none) Dictyostelium discoideum chromoso...    58   6e-07
AC116957_6(AC116957|pid:none) Dictyostelium discoideum chromosom...    58   8e-07
AC117075_45(AC117075|pid:none) Dictyostelium discoideum chromoso...    56   2e-06
AC115604_12(AC115604|pid:none) Dictyostelium discoideum chromoso...    54   9e-06
(Q5UQL2) RecName: Full=Putative F-box and FNIP repeat-containing...    54   1e-05
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    51   7e-05
AC115612_2(AC115612|pid:none) Dictyostelium discoideum chromosom...    50   2e-04
AC117072_27(AC117072|pid:none) Dictyostelium discoideum chromoso...    48   6e-04
(Q5UP38) RecName: Full=Putative FNIP repeat-containing protein L...    47   0.001
AC114265_1(AC114265|pid:none) Dictyostelium discoideum chromosom...    47   0.001
(Q54FS2) RecName: Full=FNIP repeat-containing protein DDB_G02906...    47   0.001
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...    47   0.002
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    47   0.002
AC115684_4(AC115684|pid:none) Dictyostelium discoideum chromosom...    46   0.002
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            45   0.004
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    45   0.004
(Q5UPW6) RecName: Full=Putative FNIP repeat-containing protein L...    44   0.011
CP000867_229(CP000867|pid:none) Methanococcus maripaludis C6, co...    43   0.026
AC115598_30(AC115598|pid:none) Dictyostelium discoideum chromoso...    42   0.033
AC116305_99(AC116305|pid:none) Dictyostelium discoideum chromoso...    42   0.033
AC117081_26(AC117081|pid:none) Dictyostelium discoideum chromoso...    41   0.074
AE005674_722(AE005674|pid:none) Shigella flexneri 2a str. 301, c...    41   0.074
CP000034_777(CP000034|pid:none) Shigella dysenteriae Sd197, comp...    41   0.074
CP000500_39(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso...    41   0.074
EU743832_1(EU743832|pid:none) Shigella boydii invasion plasmid a...    41   0.074
DQ347776_1(DQ347776|pid:none) Listeria monocytogenes strain FSLR...    41   0.097
FJ024966_1(FJ024966|pid:none) Listeria monocytogenes strain NRRL...    41   0.097
FJ024988_1(FJ024988|pid:none) Listeria monocytogenes strain NRRL...    40   0.17
EU189480_1(EU189480|pid:none) Brassica oleracea cultivar KT18 fl...    40   0.17
EU189482_1(EU189482|pid:none) Brassica rapa cultivar TO1441 flag...    40   0.17
FJ024991_1(FJ024991|pid:none) Listeria monocytogenes strain NRRL...    40   0.22
AB276429_1(AB276429|pid:none) Listeria monocytogenes inlA for in...    39   0.28
AF497163_1(AF497163|pid:none) Listeria monocytogenes strain FSLj...    39   0.28
EU189481_1(EU189481|pid:none) Brassica rapa cultivar TO1434 flag...    39   0.28
DQ844366_1(DQ844366|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
DQ844405_1(DQ844405|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
DQ843791_1(DQ843791|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
DQ242614_1(DQ242614|pid:none) Streptococcus agalactiae Blr (blr)...    39   0.28
DQ843801_1(DQ843801|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
EU189479_1(EU189479|pid:none) Brassica oleracea cultivar BI16 fl...    39   0.28
FM178788_1(FM178788|pid:none) Listeria monocytogenes inlA gene f...    39   0.28
DQ844359_1(DQ844359|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
AB276428_1(AB276428|pid:none) Listeria monocytogenes inlA for in...    39   0.28
AF497164_1(AF497164|pid:none) Listeria monocytogenes strain FSLC...    39   0.28
DQ844350_1(DQ844350|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
DQ844351_1(DQ844351|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
DQ844404_1(DQ844404|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
DQ843792_1(DQ843792|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
DQ843822_1(DQ843822|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
EU189471_1(EU189471|pid:none) Brassica carinata flagellin-sensin...    39   0.28
DQ844375_1(DQ844375|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
EF445931_1(EF445931|pid:none) Listeria monocytogenes clone s4304...    39   0.28
DQ844403_1(DQ844403|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
AB276379_1(AB276379|pid:none) Listeria monocytogenes inlA for in...    39   0.28
DQ132795_1(DQ132795|pid:none) Listeria monocytogenes strain 1040...    39   0.28
EF445901_1(EF445901|pid:none) Listeria monocytogenes clone e1125...    39   0.28
DQ843789_1(DQ843789|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
FJ024965_1(FJ024965|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
DQ844349_1(DQ844349|pid:none) Listeria monocytogenes strain NRRL...    39   0.28
CP000745_1662(CP000745|pid:none) Methanococcus maripaludis C7, c...    39   0.37
CP000114_918(CP000114|pid:none) Streptococcus agalactiae A909, c...    39   0.37
AL766848_4(AL766848|pid:none) Streptococcus agalactiae NEM316 co...    39   0.48
AE009948_885(AE009948|pid:none) Streptococcus agalactiae 2603V/R...    38   0.63
FJ495194_1(FJ495194|pid:none) Listeria monocytogenes strain 4140...    38   0.63
AP006852_287(AP006852|pid:none) Candida albicans genomic DNA, ch...    38   0.63
DQ347766_1(DQ347766|pid:none) Listeria monocytogenes strain FSLF...    38   0.82
FJ024968_1(FJ024968|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
AB276381_1(AB276381|pid:none) Listeria monocytogenes inlA for in...    38   0.82
FJ024986_1(FJ024986|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
DQ347771_1(DQ347771|pid:none) Listeria monocytogenes strain FSLJ...    38   0.82
FJ025003_1(FJ025003|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
FJ024979_1(FJ024979|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
EF445930_1(EF445930|pid:none) Listeria monocytogenes clone s4295...    38   0.82
AF497167_1(AF497167|pid:none) Listeria monocytogenes strain FSLX...    38   0.82
FJ024980_1(FJ024980|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
EF445938_1(EF445938|pid:none) Listeria monocytogenes clone f2695...    38   0.82
FJ025012_1(FJ025012|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
FJ024971_1(FJ024971|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
FJ025000_1(FJ025000|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
DQ347769_1(DQ347769|pid:none) Listeria monocytogenes strain FSLF...    38   0.82
FJ024994_1(FJ024994|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
FJ024983_1(FJ024983|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
FJ024969_1(FJ024969|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
FJ024984_1(FJ024984|pid:none) Listeria monocytogenes strain NRRL...    38   0.82
EU189470_1(EU189470|pid:none) Iberis amara flagellin-sensing 2-l...    38   0.82
AF497155_1(AF497155|pid:none) Listeria monocytogenes strain FSLJ...    37   1.1
DQ843823_1(DQ843823|pid:none) Listeria monocytogenes strain NRRL...    37   1.1
FJ617527_1(FJ617527|pid:none) Listeria monocytogenes strain CSUF...    37   1.1
AY436594_1(AY436594|pid:none) Listeria monocytogenes isolate F69...    37   1.1
AB276406_1(AB276406|pid:none) Listeria monocytogenes inlA for in...    37   1.1
DQ347774_1(DQ347774|pid:none) Listeria monocytogenes strain FSLJ...    37   1.1
EF558942_1(EF558942|pid:none) Listeria monocytogenes isolate R9 ...    37   1.1
EF445918_1(EF445918|pid:none) Listeria monocytogenes clone n4290...    37   1.1
EF558940_1(EF558940|pid:none) Listeria monocytogenes isolate R7 ...    37   1.1
EF558935_1(EF558935|pid:none) Listeria monocytogenes isolate R2 ...    37   1.1
EF445913_1(EF445913|pid:none) Listeria monocytogenes clone f2637...    37   1.1
EF445928_1(EF445928|pid:none) Listeria monocytogenes clone f2663...    37   1.1
FJ024993_1(FJ024993|pid:none) Listeria monocytogenes strain NRRL...    37   1.1
(P25146) RecName: Full=Internalin-A; Flags: Precursor;  &AB1129(...    37   1.1
FJ024998_1(FJ024998|pid:none) Listeria monocytogenes strain NRRL...    37   1.1
AY436593_1(AY436593|pid:none) Listeria monocytogenes isolate J01...    37   1.1
DQ844407_1(DQ844407|pid:none) Listeria monocytogenes strain NRRL...    37   1.1
EF445917_1(EF445917|pid:none) Listeria monocytogenes clone e1123...    37   1.1
DQ843837_1(DQ843837|pid:none) Listeria monocytogenes strain NRRL...    37   1.1
DQ844376_1(DQ844376|pid:none) Listeria monocytogenes strain NRRL...    37   1.1
EF445906_1(EF445906|pid:none) Listeria monocytogenes clone f2666...    37   1.1
EU189472_1(EU189472|pid:none) Brassica fruticulosa flagellin-sen...    37   1.1
FM179779_1(FM179779|pid:none) Listeria monocytogenes inlA gene f...    37   1.1
EF445920_1(EF445920|pid:none) Listeria monocytogenes clone n4293...    37   1.1
DQ844401_1(DQ844401|pid:none) Listeria monocytogenes strain NRRL...    37   1.1
CP000728_381(CP000728|pid:none) Clostridium botulinum F str. Lan...    37   1.4
AY228472_1(AY228472|pid:none) Listeria monocytogenes strain F621...    37   1.4
EU962518_1(EU962518|pid:none) Zea mays clone 243391 hypothetical...    37   1.4
AF497166_1(AF497166|pid:none) Listeria monocytogenes strain FSLW...    37   1.4
FM992694_237(FM992694|pid:none) Candida dubliniensis CD36 chromo...    37   1.4
DQ347777_1(DQ347777|pid:none) Listeria monocytogenes strain FSLR...    37   1.4
FM992688_643(FM992688|pid:none) Candida dubliniensis CD36 chromo...    37   1.4
CP000500_44(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso...    37   1.8
FM242711_2011(FM242711|pid:none) Listeria monocytogenes Clip8145...    37   1.8
AC116032_2(AC116032|pid:none) Dictyostelium discoideum chromosom...    37   1.8
EU189477_1(EU189477|pid:none) Sinapis alba flagellin-sensing 2-l...    36   2.4
EU189475_1(EU189475|pid:none) Isatis glauca flagellin-sensing 2-...    36   2.4
(P19879) RecName: Full=Mimecan; AltName: Full=Osteoglycin; Conta...    36   3.1
(Q723K6) RecName: Full=Internalin-A; Flags: Precursor;  &AE01726...    36   3.1
U25445_1(U25445|pid:none) Listeria monocytogenes F2365 internali...    36   3.1
FJ617534_1(FJ617534|pid:none) Listeria monocytogenes strain CSUF...    36   3.1
CR382138_1069(CR382138|pid:none) Debaryomyces hansenii strain CB...    36   3.1
CR382136_699(CR382136|pid:none) Debaryomyces hansenii strain CBS...    36   3.1
FJ024976_1(FJ024976|pid:none) Listeria monocytogenes strain NRRL...    36   3.1
DQ347775_1(DQ347775|pid:none) Listeria monocytogenes strain FSLM...    36   3.1
DQ843819_1(DQ843819|pid:none) Listeria monocytogenes strain NRRL...    36   3.1
DQ844408_1(DQ844408|pid:none) Listeria monocytogenes strain NRRL...    36   3.1
FJ025010_1(FJ025010|pid:none) Listeria monocytogenes strain NRRL...    36   3.1
EF409978_1(EF409978|pid:none) Listeria monocytogenes strain LI05...    36   3.1
AF017339_1(AF017339|pid:none) Bos taurus keratan sulfate proteog...    35   4.1
EU408808_1(EU408808|pid:none) Listeria monocytogenes isolate VIM...    35   4.1
EU408804_1(EU408804|pid:none) Listeria monocytogenes isolate VIM...    35   4.1
BC102526_1(BC102526|pid:none) Bos taurus osteoglycin, mRNA (cDNA...    35   4.1
EU189476_1(EU189476|pid:none) Thlaspi alpestre flagellin-sensing...    35   5.3
AY150843_7(AY150843|pid:none) Yersinia enterocolitica strain A12...    35   5.3
AJ507091_1(AJ507091|pid:none) Hordeum vulgare partial mRNA for N...    35   7.0
EU189478_1(EU189478|pid:none) Alyssum alyssoides flagellin-sensi...    35   7.0
CP000568_2509(CP000568|pid:none) Clostridium thermocellum ATCC 2...    35   7.0
U25451_1(U25451|pid:none) Listeria monocytogenes F4233 internali...    35   7.0
CU466930_1204(CU466930|pid:none) Candidatus Cloacamonas acidamin...    35   7.0
AL844509_581(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   7.0
(Q5RBL2) RecName: Full=Mimecan; AltName: Full=Osteoglycin; Flags...    34   9.1
CP001130_178(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co...    34   9.1
(P20774) RecName: Full=Mimecan; AltName: Full=Osteoglycin; AltNa...    34   9.1
AK295433_1(AK295433|pid:none) Homo sapiens cDNA FLJ59205 complet...    34   9.1

>AC117267_6(AC117267|pid:none) Dictyostelium discoideum chromosome 2
            map 5836255-5862024 strain AX4, complete sequence.
          Length = 761

 Score =  131 bits (330), Expect = 4e-29
 Identities = 86/253 (33%), Positives = 132/253 (52%), Gaps = 34/253 (13%)
 Frame = +2

Query: 554  LPAXLGSIKFGSKFNQPLNGDFQLCVLPPNLTNLEFGLEFNQSLTAAMLPSSLTCLKFGD 733
            LP  +  IKFG  F++    D +LC  P ++T+++FG +FN+ L+  M+  +LT + FG
Sbjct: 515  LPNSIREIKFGRAFDR----DIKLC--PSSITSIDFGNKFNRPLS--MMTQTLTSIDFGS 566

Query: 734  NFNPPLSTSSMSALFLHTNLVSLEFGKQFKNVIPINTLPKSLKHLNLGGFNDNLSIIKDS 913
             FN  +       +F+HT L SL FG  F  +IP +TLP +L+ LNLGG+N  +++  D
Sbjct: 567  KFNQIIP----QGIFIHTKLKSLNFGYHFNQIIPADTLPPTLESLNLGGYNREITVKNDE 622

Query: 914  LDC---------------------------------TSLESLVLDNFNQYIKPADLPPTL 994
             DC                                 TSL++L L+ FN+ I+  DLP ++
Sbjct: 623  YDCYGISNKGGFGSNSSSNFCVGGTNNGLREMLKNTTSLKTLTLNYFNRKIEVGDLPNSI 682

Query: 995  TSLQLGITFDKPIGKDVLPNSLKILEIKNSKYSHQLYQIN-LPKSLDKLIIHFGNVNLLN 1171
             SL LG  F++PIG +VLP  LK L I NS+++  +     +P  L  + I   N+N +N
Sbjct: 683  ESLNLGYHFNQPIGNNVLPKLLKKLFILNSEFNQNISADGCIPFGLQTIYIRNSNMNFIN 742

Query: 1172 NFTADYFIIKF*N 1210
            +     FI K+ N
Sbjct: 743  SLN-PLFITKYIN 754

 Score = 72.4 bits (176), Expect = 3e-11
 Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 27/208 (12%)
 Frame = +2

Query: 536  IIXXXXLPAXLGSIKFGSKFNQPLNGDFQLCVLPPNLTNLEFGLEFNQSLTAAMLPSSLT 715
            +I    LP  L SI+F  ++N       Q  +LPP+++++ F   FNQ +   ++  ++
Sbjct: 328  MIRVNSLPEGLKSIEFEKEYNV-----IQDRLLPPSISSIRFSYGFNQRIAKGVISDNVI 382

Query: 716  CLKFGDNFNPPLSTSSMSALFLHTNLVSLEFGKQFKNVIPINTLPKSLKHL--------- 868
             + FGD+FN      S+   +L   L  L+FG +F+  I +  LP SL  L
Sbjct: 383  SITFGDSFN-----QSLDGNWLPKQLKHLQFGHKFQQTIKMGQLPSSLTSLILDPRSYKG 437

Query: 869  --NLGGFNDNLSIIKDSLD-CTSLES------------LVLDN-FNQYIKPADLPP--TL 994
               +G   D++  +    + C++ ES            LV D+ FNQ IK  D+     L
Sbjct: 438  VIEIGSIPDSVKTLDYKFNSCSNQESISFNPIPKSITRLVFDSEFNQNIKANDISSNYNL 497

Query: 995  TSLQLGITFDKPIGKDVLPNSLKILEIK 1078
            TS+  G  F+  IG   LPNS++  EIK
Sbjct: 498  TSIHFGEHFNSDIGIKSLPNSIR--EIK 523

 Score = 62.4 bits (150), Expect = 3e-08
 Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 55/244 (22%)
 Frame = +2

Query: 572  SIKFGSKFNQPLNGDFQLCVLPPNLTNLEFGLEFNQSLTAAMLPSSLTCL---------- 721
            SI FG  FNQ L+G++    LP  L +L+FG +F Q++    LPSSLT L
Sbjct: 383  SITFGDSFNQSLDGNW----LPKQLKHLQFGHKFQQTIKMGQLPSSLTSLILDPRSYKGV 438

Query: 722  --------------------------------------KFGDNFNPPLSTSSMSALFLHT 787
                                                   F   FN  +  + +S+ +
Sbjct: 439  IEIGSIPDSVKTLDYKFNSCSNQESISFNPIPKSITRLVFDSEFNQNIKANDISSNY--- 495

Query: 788  NLVSLEFGKQFKNVIPINTLPKSLKHLNLG-GFNDNLSIIKDSLDCTSLESLVLDNFNQY 964
            NL S+ FG+ F + I I +LP S++ +  G  F+ ++ +   S+         +D  N++
Sbjct: 496  NLTSIHFGEHFNSDIGIKSLPNSIREIKFGRAFDRDIKLCPSSITS-------IDFGNKF 548

Query: 965  IKPAD-LPPTLTSLQLGITFDKPIGKDVLPNSLKI-LEIKNSKYSHQLYQI----NLPKS 1126
             +P   +  TLTS+  G  F++     ++P  + I  ++K+  + +   QI     LP +
Sbjct: 549  NRPLSMMTQTLTSIDFGSKFNQ-----IIPQGIFIHTKLKSLNFGYHFNQIIPADTLPPT 603

Query: 1127 LDKL 1138
            L+ L
Sbjct: 604  LESL 607

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
 Frame = +2

Query: 128 LFFNCWRNEIILNKILFHTRLFNVHTTMK--MTIDQYSTYKYKSYIENLIFANYEEDSD 298
           LF   WRN +I  +ILFH RL+N+H   K  +T  Q   YK+K Y+++++  NY +D+D
Sbjct: 207 LFRQVWRNIVIKTQILFHLRLYNIHANKKVFLTPIQLVDYKFKGYLQSMVL-NYHDDND 264

 Score = 44.7 bits (104), Expect = 0.007
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
 Frame = +2

Query: 749  LSTSSMSALFLHTNLVSLEFGKQFKNVIPINTLPKSLKHLNLG-GFNDNLS--IIKDSLD 919
            L  S +    L   L S+EF K++ NVI    LP S+  +    GFN  ++  +I D++
Sbjct: 324  LELSMIRVNSLPEGLKSIEFEKEY-NVIQDRLLPPSISSIRFSYGFNQRIAKGVISDNVI 382

Query: 920  CTSLESLVLDNFNQYIKPADLPPTLTSLQLGITFDKPIGKDVLPNSLKILEIKNSKYSHQ 1099
              +      D+FNQ +    LP  L  LQ G  F + I    LP+SL  L +    Y
Sbjct: 383  SITFG----DSFNQSLDGNWLPKQLKHLQFGHKFQQTIKMGQLPSSLTSLILDPRSYKGV 438

Query: 1100 LYQINLPKSLDKLIIHFGN 1156
            +   ++P S+  L   F +
Sbjct: 439  IEIGSIPDSVKTLDYKFNS 457

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,506,372,742
Number of extensions: 28153685
Number of successful extensions: 72136
Number of sequences better than 10.0: 171
Number of HSP's gapped: 71683
Number of HSP's successfully gapped: 303
Length of query: 404
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 273
Effective length of database: 621,205,444
Effective search space: 169589086212
Effective search space used: 169589086212
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

 psg: 0.37  gvh: 0.22  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 28.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U08617-1 is nuc