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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08565-1
Contig ID Contig-U08565-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08565-1 (Contig-U08565-1Q) /CSM_Contig/Contig-U08565-1Q.Seq.d
ATATATATATATATAAAAAAAAAAAAAAAAAAAAAANCCCTTTTTTTTTA
NGTTTTTTTTAAAAAAAAAAGNAAAAAAAAAANCNNTNCNNNTTTTTTTT
NANNAAAAAAAAAAANNANTTTTTTTTNTTTTTTTTNAAAAAAAA
Gap no gap
Contig length 145
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U08565
List of clone(s) 

est1=SFK885F,1,146
Translated Amino Acid sequence 
IYIYIKKKKKKKXLFFXVFFKKKXKKKXXXXFFXXKKKXXFFXFFXKK
Translated Amino Acid sequence (All Frames) 
Frame A:
IYIYIKKKKKKKXLFFXVFFKKKXKKKXXXXFFXXKKKXXFFXFFXKK


Frame B:
yiyi*kkkkkkxpfffxfflkkkxkkkxxxxffxxkkkxxffxffxkk


Frame C:
iyiykkkkkkkxpfflxff*kkkxkkxxxxffxxkkkxxffxffxkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08565-1 (Contig-U08565-1Q)
/CSM_Contig/Contig-U08565-1Q.Seq.d
         (145 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08565-1 (Contig-U08565-1Q) /CSM_Contig/Conti...    40  6e-04
Contig-U04697-1 (Contig-U04697-1Q) /CSM_Contig/Conti...    36  0.009
Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Conti...    30  0.58
Contig-U10970-1 (Contig-U10970-1Q) /CSM_Contig/Conti...    30  0.58
Contig-U10603-1 (Contig-U10603-1Q) /CSM_Contig/Conti...    30  0.58
Contig-U09367-1 (Contig-U09367-1Q) /CSM_Contig/Conti...    30  0.58
Contig-U05086-1 (Contig-U05086-1Q) /CSM_Contig/Conti...    30  0.58
Contig-U03663-1 (Contig-U03663-1Q) /CSM_Contig/Conti...    30  0.58
Contig-U14262-1 (Contig-U14262-1Q) /CSM_Contig/Conti...    28  2.3

>Contig-U08565-1 (Contig-U08565-1Q) /CSM_Contig/Contig-U08565-1Q.Seq.d
          Length = 145

 Score = 40.1 bits (20), Expect = 6e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 38 ccctttttttttangtttttttt 60
          |||||||||||||||||||||||
Sbjct: 38 ccctttttttttangtttttttt 60


 Score = 28.2 bits (14), Expect = 2.3
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 1  atatatatatatat 14
          ||||||||||||||
Sbjct: 14 atatatatatatat 1


 Score = 28.2 bits (14), Expect = 2.3
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                        
Query: 1  atatatatatatat 14
          ||||||||||||||
Sbjct: 1  atatatatatatat 14


 Score = 26.3 bits (13), Expect = 9.0
 Identities = 13/13 (100%)
 Strand = Plus / Minus

                       
Query: 2  tatatatatatat 14
          |||||||||||||
Sbjct: 15 tatatatatatat 3


 Score = 26.3 bits (13), Expect = 9.0
 Identities = 13/13 (100%)
 Strand = Plus / Plus

                       
Query: 1  atatatatatata 13
          |||||||||||||
Sbjct: 3  atatatatatata 15


>Contig-U04697-1 (Contig-U04697-1Q) /CSM_Contig/Contig-U04697-1Q.Seq.d
          Length = 522

 Score = 36.2 bits (18), Expect = 0.009
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 40  ctttttttttangtttttttt 60
           ||||||||||| |||||||||
Sbjct: 362 ctttttttttatgtttttttt 382


>Contig-U13948-1 (Contig-U13948-1Q) /CSM_Contig/Contig-U13948-1Q.Seq.d
          Length = 1253

 Score = 30.2 bits (15), Expect = 0.58
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 39  cctttttttttangtttt 56
           |||||||||||| |||||
Sbjct: 795 cctttttttttaggtttt 812


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3230
Number of Sequences: 6905
Number of extensions: 3230
Number of successful extensions: 1782
Number of sequences better than 10.0: 233
length of query: 145
length of database: 5,674,871
effective HSP length: 15
effective length of query: 130
effective length of database: 5,571,296
effective search space: 724268480
effective search space used: 724268480
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)
dna update 2005. 1. 5
Homology vs DNA 
Query= Contig-U08565-1 (Contig-U08565-1Q) /CSM_Contig/Contig-U08565-1Q.Seq.d
         (145 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq;
ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq;
ddbjhum9.seq; /db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq;
ddbjrod11.seq; ddbjrod12.seq; ddbjrod13.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq;
ddbjbct8.seq; ddbjbct9.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq;
ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq; ddbjvrl4.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss100.seq; ddbjgss101.seq; ddbjgss102.seq; ddbjgss103.seq;
ddbjgss104.seq; ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq;
ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq;
ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq;
ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq;
ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq;
ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq;
ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq;
ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq;
ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq;
ddbjgss60.seq; ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq;
ddbjgss64.seq; ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq;
ddbjgss68.seq; ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq;
ddbjgss71.seq; ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq;
ddbjgss75.seq; ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq;
ddbjgss79.seq; ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq;
ddbjgss82.seq; ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq;
ddbjgss86.seq; ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq;
ddbjgss9.seq; ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq;
ddbjgss93.seq; ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq;
ddbjgss97.seq; ddbjgss98.seq; ddbjgss99.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg1.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat15.seq; ddbjpat16.seq; ddbjpat2.seq; ddbjpat3.seq;
ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
ddbjpat9.seq; /db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq;
ddbjsts2.seq; ddbjsts3.seq; ddbjsts4.seq;
/db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq; est_cele1.seq;
est_drer1.seq; /db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
est_gmax1.seq; /db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq;
est_hum2.seq; est_hum3.seq; est_hum4.seq;
/db/DDBJNEW.DATA/a/new_est_hum1.seq; est_lesc1.seq;
/db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq;
est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq; est_osat1.seq;
/db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq;
/db/DDBJNEW.DATA/a/new_est_rest1.seq
           37,538,319 sequences; Z,843,166,713 total letters

Searching............................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CW121017|CW121017.1 104_498_11109658_148_34654_035 Sorghum m...    28   0.29   3
CL467082|CL467082.1 SAIL_1266_B11.v1 SAIL Collection Arabido...    30   0.29   3
CL152014|CL152014.1 104_335_10779660_116_31364_060 Sorghum m...    28   0.41   3
AL476933|AL476933.1 T. brucei sheared genomic DNA clone 195a...    36   0.66   2
AL485433|AL485433.1 T. brucei sheared genomic DNA clone 280h...    28   1.1    2
BM273961|BM273961.1 PfESToaa61h10.y1 Plasmodium falciparum 3...    28   1.3    3
BM274362|BM274362.1 PfESToaa44g10.y1 Plasmodium falciparum 3...    28   1.3    3
AL473741|AL473741.1 T. brucei sheared genomic DNA clone 180f...    28   1.4    3
AZ585116|AZ585116.1 1M0389L24R Mouse 10kb plasmid UUGC1M lib...    28   1.4    2
AL495498|AL495498.1 T. brucei sheared genomic DNA clone 360a...    28   1.4    3
BQ633370|BQ633370.1 PfESToab41a10.y1 Plasmodium falciparum 3...    28   1.6    3
CR574084|CR574084.1 Xenopus tropicalis EST, clone THdA039n15...    28   1.9    3
AZ589684|AZ589684.1 1M0398O17R Mouse 10kb plasmid UUGC1M lib...    28   2.0    2
AL492452|AL492452.1 T. brucei sheared genomic DNA clone 319c...    28   2.0    2
AQ946576|AQ946576.1 Sheared DNA-49C21.TF Sheared DNA Trypano...    28   2.0    3
AC108821|AC108821.6 Mus musculus chromosome 15, clone RP23-6...    40   2.1    3
W68968|W68968.1 T2838 MVAT4 bloodstream form of serodeme WRA...    28   2.1    3
BD399283|BD399283.1 Method of Identification of Variety of R...    28   2.4    2
AZ387831|AZ387831.1 1M0147F22R Mouse 10kb plasmid UUGC1M lib...    28   2.4    2
AY144069|AY144069.1 Clusia rosea tRNA-Leu (trnL) gene, intro...    34   2.5    2
BZ060299|BZ060299.1 lkz66a04.b1 B.oleracea002 Brassica olera...    28   2.5    3
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 ma...    34   2.5    4
BI891717|BI891717.1 ZF637-3-000972 Zebrafish shield stage wh...    38   2.6    2
AY144073|AY144073.1 Clusia valerii tRNA-Leu (trnL) gene, int...    34   2.6    2
AQ854767|AQ854767.1 CpG2138B CpIOWAgDNA1 Cryptosporidium par...    28   2.7    3
BD107613|BD107613.1 Novel microsatellite DNA derived from pe...    28   3.0    2
E04678|E04678.1 Synthetic nucleotide with(GACGTC)structure,h...    28   3.0    2
AZ657173|AZ657173.1 1M0533L09F Mouse 10kb plasmid UUGC1M lib...    28   3.0    2
AL943661|AL943661.1 Arabidopsis thaliana T-DNA flanking sequ...    28   3.0    2
AZ423768|AZ423768.1 1M0203G21F Mouse 10kb plasmid UUGC1M lib...    28   3.3    2
AZ343286|AZ343286.1 1M0076E20R Mouse 10kb plasmid UUGC1M lib...    28   3.3    2
M10129|M10129.1 Plasmodium falciparum (isolate FC27) S-antig...    28   3.5    3
BD105780|BD105780.1 Conjugates of biologically stable polyme...    28   3.6    2
AZ789378|AZ789378.1 2M0037M05F Mouse 10kb plasmid UUGC1M lib...    28   3.6    2
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 ...    30   3.8    2
AC128096|AC128096.3 Rattus norvegicus clone CH230-84J6, *** ...    30   3.9    2
AZ868364|AZ868364.1 2M0180L03F Mouse 10kb plasmid UUGC1M lib...    28   3.9    2
AC094146|AC094146.6 Rattus norvegicus clone CH230-2L14, *** ...    30   3.9    2
AC136438|AC136438.1 Homo sapiens chromosome 16 clone RP11-35...    30   3.9    2
AC145311|AC145311.1 Homo sapiens chromosome 16 clone RP11-13...    30   3.9    2
AC134678|AC134678.7 Homo sapiens chromosome 15, clone RP13-1...    30   3.9    2
AC141449|AC141449.1 Homo sapiens chromosome 16 clone RP11-33...    30   3.9    2
AC134132|AC134132.3 Rattus norvegicus clone CH230-244A14, WO...    30   3.9    2
AC142534|AC142534.1 Homo sapiens chromosome 16 clone RP11-10...    30   3.9    2
AC126603|AC126603.9 Homo sapiens chromosome 15, clone RP11-4...    30   3.9    2
AC143324|AC143324.1 Homo sapiens chromosome 16 clone RP11-78...    30   3.9    2
AC026495|AC026495.13 Homo sapiens chromosome 15, clone RP11-...    30   3.9    2
AC142541|AC142541.1 Homo sapiens chromosome 16 clone RP11-70...    30   4.0    2
AC141071|AC141071.1 Homo sapiens chromosome 16 clone RP11-20...    30   4.0    2
AC141591|AC141591.1 Homo sapiens chromosome 16 clone RP11-10...    30   4.0    2
AZ584665|AZ584665.1 1M0389A23F Mouse 10kb plasmid UUGC1M lib...    28   4.0    2
AZ939462|AZ939462.1 2M0198M21F Mouse 10kb plasmid UUGC2M lib...    28   4.2    2
AZ832195|AZ832195.1 2M0112O23F Mouse 10kb plasmid UUGC1M lib...    28   4.2    2
AZ338626|AZ338626.1 1M0069G17R Mouse 10kb plasmid UUGC1M lib...    28   4.2    2
AL464704|AL464704.1 T. brucei sheared genomic DNA clone 117f...    28   4.2    2
AZ651197|AZ651197.1 1M0521G15R Mouse 10kb plasmid UUGC1M lib...    28   4.5    2
A13479|A13479.1 P.falciparum gene for 41kd antigen, clone 41...    28   4.6    3
E64863|E64863.1 Malaria-specific DNA arrangement, expression...    28   4.6    3
BD399284|BD399284.1 Method of Identification of Variety of R...    28   4.7    2
AR242402|AR242402.1 Sequence 5 from patent US 6472211.             28   4.7    2
AR131092|AR131092.1 Sequence 5 from patent US 6191258.             28   4.7    2
AR053368|AR053368.1 Sequence 5 from patent US 5834236.             28   4.7    2
AZ347530|AZ347530.1 1M0083I09R Mouse 10kb plasmid UUGC1M lib...    28   4.7    2
AZ871984|AZ871984.1 2M0185F07F Mouse 10kb plasmid UUGC1M lib...    28   5.0    2
AZ336537|AZ336537.1 1M0066C23R Mouse 10kb plasmid UUGC1M lib...    28   5.0    2
CW193900|CW193900.1 104_616_11179812_116_36784_034 Sorghum m...    28   5.2    3
AZ523168|AZ523168.1 216PbB07 Pb MBN #21 Plasmodium berghei g...    28   5.2    3
BD251661|BD251661.1 Selection of animal based on character i...    28   5.5    2
AX547771|AX547771.1 Sequence 910 from Patent WO02053141.           28   5.5    2
AX104718|AX104718.1 Sequence 910 from Patent WO0122972.            28   5.5    2
AX028362|AX028362.1 Sequence 181 from Patent WO0036143.            28   5.5    2
AL493407|AL493407.1 T. brucei sheared genomic DNA clone 324h...    26   5.5    2
AC023688|AC023688.4 Drosophila melanogaster X BAC RP98-42F7 ...    32   5.5    4
BQ540212|BQ540212.1 PTAM0529 Phaeodactylum tricornutum Uni-Z...    28   5.6    2
CF320377|CF320377.1 HD--11-E01.b1 OsHDAC1-overexpressing tra...    28   5.6    2
CR089998|CR089998.1 Reverse strand read from insert in 5'HPR...    28   6.4    3
AF511532|AF511532.1 Danio rerio gonadotropin-releasing hormo...    36   6.5    2
AZ629604|AZ629604.1 1M0482N12R Mouse 10kb plasmid UUGC1M lib...    28   6.5    2
AZ595271|AZ595271.1 1M0407I16R Mouse 10kb plasmid UUGC1M lib...    28   6.5    2
AL491982|AL491982.1 T. brucei sheared genomic DNA clone 330e...    28   6.5    2
CW344023|CW344023.1 104_846_11487737_148_36194_071 Sorghum m...    28   6.7    3
AZ833805|AZ833805.1 2M0116G09F Mouse 10kb plasmid UUGC1M lib...    28   7.3    2
AZ273449|AZ273449.1 RPCI-23-161I19.TJ RPCI-23 Mus musculus g...    28   7.5    3
AE001385|AE001385.1 Plasmodium falciparum 3D7 chromosome 2 s...    30   7.5    3
BH947701|BH947701.1 obv10g01.b1 B.oleracea002 Brassica olera...    28   7.9    3
AC113198|AC113198.15 Mus musculus chromosome 14, clone RP23-...    38   8.0    3
AP007874|AP007874.1 Lotus corniculatus var. japonicus genomi...    36   8.1    3
AZ804074|AZ804074.1 2M0064H15R Mouse 10kb plasmid UUGC1M lib...    28   8.1    2
AC118951|AC118951.8 Rattus norvegicus clone CH230-345J18, WO...    40   8.2    2
AZ965009|AZ965009.1 2M0234K19R Mouse 10kb plasmid UUGC2M lib...    28   8.4    2
AZ377954|AZ377954.1 1M0132F04R Mouse 10kb plasmid UUGC1M lib...    28   8.4    2
BQ388457|BQ388457.1 NISC_mq01f10.x1 NICHD_XGC_Emb5 Xenopus t...    32   8.6    2
AC126249|AC126249.4 Mus musculus BAC clone RP23-412I9 from c...    40   8.6    1
AJ840788|AJ840788.1 Arabidopsis thaliana T-DNA flanking sequ...    40   8.6    1
CO249717|CO249717.1 AGENCOURT_26524393 NIH_MGC_212 Homo sapi...    40   8.6    1
AC097569|AC097569.6 Rattus norvegicus clone CH230-67E3, *** ...    40   8.6    1
CF888155|CF888155.1 amastc-192 TcAM Trypanosoma cruzi cDNA c...    40   8.6    1
BZ132385|BZ132385.1 CH230-345J18.TV CHORI-230 Segment 2 Ratt...    40   8.6    1
AV207338|AV207338.1 Mus musculus adult male testis cDNA, RIK...    40   8.6    1
CN052263|CN052263.1 Salamander_11_D05.ab1 AG Ambystoma tigri...    40   8.6    1

>CW121017|CW121017.1 104_498_11109658_148_34654_035 Sorghum
           methylation filtered librarysequence.
          Length = 453

 Score = 28.2 bits (14), Expect(3) = 0.29
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 1   atatatatatatat 14
           ||||||||||||||
Sbjct: 181 atatatatatatat 194

 Score = 28.2 bits (14), Expect(3) = 0.29
 Identities = 14/14 (100%)
 Strand = Plus / Minus


Query: 1   atatatatatatat 14
           ||||||||||||||
Sbjct: 386 atatatatatatat 373

 Score = 26.3 bits (13), Expect(3) = 0.29
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 38  cccttttttttta 50
           |||||||||||||
Sbjct: 212 cccttttttttta 224

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 25,369,975
Number of Sequences: 37538319
Number of extensions: 25369975
Number of successful extensions: 20725499
Number of sequences better than 10.0: 256
length of query: 145
length of database: Z,843,166,713
effective HSP length: 21
effective length of query: 124
effective length of database: Z,054,862,014
effective search space: 5214802889736
effective search space used: 5214802889736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING:  [000.000]  Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08565-1 (Contig-U08565-1Q) /CSM_Contig/Contig-U08565-1Q.Seq.d
         (145 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 38,714,432
Number of extensions: 323850
Number of successful extensions: 338
Number of sequences better than 10.0: 0
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 0
Length of query: 48
Length of database: 1,040,966,779
Length adjustment: 21
Effective length of query: 27
Effective length of database: 973,676,794
Effective search space: 26289273438
Effective search space used: 26289273438
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)
PSORT 

 psg: 0.83  gvh: 0.18  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.00
 nuc: 0.85  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U08565-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0