Contig-U08552-1 |
Contig ID |
Contig-U08552-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
892 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
942361 |
End point |
943212 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U08552 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.13 |
Homology vs DNA |
Query= Contig-U08552-1 (Contig-U08552-1Q) /CSM_Contig/Contig-U08552-1Q.Seq.d (892 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ402805) Dictyostelium discoideum cDNA clone:dds18g11, 3' ... 357 e-122 2 (C90149) Dictyostelium discoideum slug cDNA, clone SSI148. 357 e-122 2 (CU914476) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.022 2 (AC224727) Bos taurus clone CH240-478B24, WORKING DRAFT SEQU... 52 0.037 1 (AC169724) Bos taurus clone CH240-213J7, WORKING DRAFT SEQUE... 52 0.037 1 (AC163173) Bos taurus clone CH240-136N13, *** SEQUENCING IN ... 52 0.037 1 (EK297687) 1095462353248 Global-Ocean-Sampling_GS-31-01-01-1... 52 0.037 1 (CU640479) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.14 1 (CU468927) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.14 1 (AC008153) Arabidopsis thaliana chromosome 3 BAC F24K9 genom... 42 0.26 4 (AC168895) Bos taurus clone CH240-208N11, WORKING DRAFT SEQU... 44 0.41 2 (AC152245) Bos taurus clone CH240-7L18, WORKING DRAFT SEQUEN... 48 0.46 3 (AC162601) Bos taurus clone CH240-112C18, WORKING DRAFT SEQU... 48 0.57 1 (AC162595) Bos taurus clone CH240-115F10, WORKING DRAFT SEQU... 48 0.57 1 (AC162199) Bos taurus clone CH240-115F6, WORKING DRAFT SEQUE... 48 0.57 1 (AC157334) Bos taurus clone CH240-53K21, WORKING DRAFT SEQUE... 48 0.57 1 (AC152203) Bos taurus clone CH240-3G15, WORKING DRAFT SEQUEN... 48 0.57 1 (CU928434) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU915381) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU914679) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU914244) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU856000) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU855730) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU633682) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU576528) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU469211) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU469098) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU468607) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU468535) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU467970) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU466404) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU457399) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU138563) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU062568) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CU019532) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CT978605) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CT971575) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CT842148) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (CT757468) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.57 1 (AC232186) Lama pacos clone CH246-66H15, WORKING DRAFT SEQUE... 48 0.57 1 (AC231687) Lama pacos clone CH246-302G14, WORKING DRAFT SEQU... 48 0.57 1 (AC231091) Bos taurus clone CH240-491J23, WORKING DRAFT SEQU... 48 0.57 1 (AC230953) Bos taurus clone CH240-494L22, WORKING DRAFT SEQU... 48 0.57 1 (AC230706) Bos taurus clone CH240-501J1, WORKING DRAFT SEQUE... 48 0.57 1 (AC230395) Bos taurus clone CH240-50E13, WORKING DRAFT SEQUE... 48 0.57 1 (AC229617) Lama pacos clone CH246-435F5, WORKING DRAFT SEQUE... 48 0.57 1 (AC226638) Lama pacos clone CH246-281G15, WORKING DRAFT SEQU... 48 0.57 1 (AC226637) Lama pacos clone CH246-119I24, WORKING DRAFT SEQU... 48 0.57 1 (AC224600) Bos taurus clone CH240-481B19, WORKING DRAFT SEQU... 48 0.57 1 (AC224414) Bos taurus clone CH240-485H13, WORKING DRAFT SEQU... 48 0.57 1 (AC223599) Bos taurus clone CH240-465B5, WORKING DRAFT SEQUE... 48 0.57 1 (AC223321) Bos taurus clone CH240-422H21, WORKING DRAFT SEQU... 48 0.57 1 (AC221848) Bos taurus clone CH240-380K24, WORKING DRAFT SEQU... 48 0.57 1 (AC221428) Bos taurus clone CH240-406O4, WORKING DRAFT SEQUE... 48 0.57 1 (AC220763) Bos taurus clone CH240-347H19, WORKING DRAFT SEQU... 48 0.57 1 (AC220762) Bos taurus clone CH240-347H15, WORKING DRAFT SEQU... 48 0.57 1 (AC220761) Bos taurus clone CH240-347H11, WORKING DRAFT SEQU... 48 0.57 1 (AC219486) Bos taurus clone CH240-332F1, WORKING DRAFT SEQUE... 48 0.57 1 (AC218203) Bos taurus clone CH240-291D18, WORKING DRAFT SEQU... 48 0.57 1 (AC174915) Bos taurus clone CH240-144P23, *** SEQUENCING IN ... 48 0.57 1 (AC171541) Bos taurus clone CH240-305P22, WORKING DRAFT SEQU... 48 0.57 1 (AC165720) Bos taurus clone CH240-128H4, WORKING DRAFT SEQUE... 48 0.57 1 (AC163001) Bos taurus clone CH240-118K22, WORKING DRAFT SEQU... 48 0.57 1 (AC162981) Bos taurus clone CH240-123C24, WORKING DRAFT SEQU... 48 0.57 1 (CC911375) t066p20ba.r1 TAMBT Bos taurus genomic clone t066p... 48 0.57 1 (EW085432) recc2826c_a9.y1 ecc Sus scrofa cDNA 5', mRNA sequ... 48 0.57 1 (DE287389) Bombyx mori genomic DNA, BAC clone:BES_012_P13. 34 0.84 3 (BM163846) EST566369 PyBS Plasmodium yoelii yoelii cDNA clon... 36 0.98 2 (AC164226) Bos taurus clone CH240-127C8, WORKING DRAFT SEQUE... 44 1.6 2 (AC139042) Mus musculus chromosome 18, clone RP23-261C19, co... 46 2.3 1 (AC113953) Mus musculus chromosome 18, clone RP24-215C1, com... 46 2.3 1 (CU326394) Medicago truncatula chromosome 5 clone mth2-12h14... 46 2.3 1 (CU179920) Medicago truncatula chromosome 5 clone mth4-25c2,... 46 2.3 1 (CT571264) Medicago truncatula chromosome 5 clone mth2-146m1... 46 2.3 1 (AP006852) Candida albicans genomic DNA, chromosome 7, compl... 46 2.3 1 (AX489065) Sequence 6365 from Patent WO02053728. 46 2.3 1 (AR549737) Sequence 4868 from patent US 6747137. 46 2.3 1 (AC160700) Bos taurus clone CH240-94J7, WORKING DRAFT SEQUEN... 46 2.3 1 (AC160047) Bos taurus clone CH240-37L15, WORKING DRAFT SEQUE... 46 2.3 1 (AC156091) Bos taurus clone CH240-57J22, WORKING DRAFT SEQUE... 46 2.3 1 (AC153228) Bos taurus clone CH240-28P8, WORKING DRAFT SEQUEN... 46 2.3 1 (AC152622) Bos taurus clone CH240-13B16, *** SEQUENCING IN P... 46 2.3 1 (AC149932) Strongylocentrotus purpuratus clone R3-16L13, WOR... 46 2.3 1 (AC146361) Bos taurus clone RP42-384C21, WORKING DRAFT SEQUE... 46 2.3 1 (CU914705) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (CU856458) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (CU633296) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (CU606964) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (CU469197) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (CU467794) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (CU466943) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (CU466330) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (CU463885) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (CU462853) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1 (AC232180) Lama pacos clone CH246-41D14, WORKING DRAFT SEQUE... 46 2.3 1 (AC231055) Bos taurus clone CH240-492H24, WORKING DRAFT SEQU... 46 2.3 1 (AC231043) Bos taurus clone CH240-492O5, WORKING DRAFT SEQUE... 46 2.3 1 (AC230709) Bos taurus clone CH240-501J22, WORKING DRAFT SEQU... 46 2.3 1 (AC230127) Bos taurus clone CH240-520H24, WORKING DRAFT SEQU... 46 2.3 1 (AC224759) Bos taurus clone CH240-477E5, WORKING DRAFT SEQUE... 46 2.3 1
>(BJ402805) Dictyostelium discoideum cDNA clone:dds18g11, 3' end, single read. Length = 509
Score = 357 bits (180), Expect(2) = e-122 Identities = 180/180 (100%) Strand = Plus / Minus
Query: 411 gataataaagaaggatatggtaatgacgatgttacagagatggtattatcatcagtttta 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 417 gataataaagaaggatatggtaatgacgatgttacagagatggtattatcatcagtttta 358
Query: 471 tatgtttcacaaaaagcaatagcgggtgcacaatttgttggtaatatttttgcagatatt 530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 357 tatgtttcacaaaaagcaatagcgggtgcacaatttgttggtaatatttttgcagatatt 298
Query: 531 tttggatttggtgaaggaaagtatcaatatcacattgatgaatataatatgatacaagag 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 297 tttggatttggtgaaggaaagtatcaatatcacattgatgaatataatatgatacaagag 238
Score = 119 bits (60), Expect(2) = e-122 Identities = 60/60 (100%) Strand = Plus / Minus
Query: 635 tatggaatctcaaacagaaccaaatataaataatgtttcaatttcaactgaatcaccaaa 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 tatggaatctcaaacagaaccaaatataaataatgtttcaatttcaactgaatcaccaaa 134
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 488,941,085 Number of extensions: 32453255 Number of successful extensions: 2822477 Number of sequences better than 10.0: 437 Length of query: 892 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 868 Effective length of database: 97,308,875,965 Effective search space: 84464104337620 Effective search space used: 84464104337620 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.24 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |