>Contig-U08517-1 (Contig-U08517-1Q) /CSM_Contig/Contig-U08517-1Q.Seq.d
NNNNNNNNNNANTNNTTTTCCCCCCCAANTTTNCCNGGGNGGNNNTTNNA
AACCCNNNNAAAAANNCCCCAAAAAAAAAAAANCCCCCCCAAAAAAANTT
TTTTNCNAAAAAAAAACCNGNAANGGGTTTNTNNTNGGGGGNNGGGGGGG
GGGNTNNNNNAAAAACNNNCCCCTTNATTTTTTNCCNAAAAAAAAAAAAA
AAAANAAAAAAAAAAAAAAATAAAAANCCTTAAACCCTTTTTTTTTTTTA
A

est1=CFJ414Z,1,242

XXXXXFSPPXXPGXXXXTXXKXPQKKKXPPKKXFXXKKNXXXVXXXGXGGGXXXKXXPXF
FXXKKKKKXKKKKIKXLKPFFFF

Frame A:
XXXXXFSPPXXPGXXXXTXXKXPQKKKXPPKKXFXXKKNXXXVXXXGXGGGXXXKXXPXF
FXXKKKKKXKKKKIKXLKPFFFF


Frame B:
xxxxxfppqxxxggxxkpxxkxpkkkkxppkkxfxxkktxxgfxxggxgggxxknxplxf
xpkkkkkxkkkkk*kxlnpfffl


Frame C:
xxxxxfppxfxxxxxxnpxkxxpkkkxppqkxffxkkkpxxgxxxgxgggxxxktxpxif
xxkkkkkxkkkknkxp*tlfff*

Query= Contig-U08517-1 (Contig-U08517-1Q)
/CSM_Contig/Contig-U08517-1Q.Seq.d
         (251 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


 ***** No hits found ******

  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 6905
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 251
length of database: 5,674,871
effective HSP length: 15
effective length of query: 236
effective length of database: 5,571,296
effective search space: 1314825856
effective search space used: 1314825856
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U08517-1 (Contig-U08517-1Q) /CSM_Contig/Contig-U08517-1Q.Seq.d
         (251 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 10,509,263
Number of extensions: 916586
Number of successful extensions: 33104
Number of sequences better than 10.0: 0
Length of query: 251
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 228
Effective length of database: 93,106,754,628
Effective search space: 21228340055184
Effective search space used: 21228340055184
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U08517-1 (Contig-U08517-1Q) /CSM_Contig/Contig-U08517-1Q.Seq.d
         (251 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 192,313,407
Number of extensions: 6548270
Number of successful extensions: 578
Number of sequences better than 10.0: 0
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 0
Length of query: 83
Length of database: 1,040,966,779
Length adjustment: 53
Effective length of query: 30
Effective length of database: 871,139,674
Effective search space: 26134190220
Effective search space used: 26134190220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

 psg: 0.80  gvh: 0.47  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.30  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 12.0 %: cytoskeletal
	 12.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U08517-1 is nuc