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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08444-1
Contig ID Contig-U08444-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08444-1 (Contig-U08444-1Q) /CSM_Contig/Contig-U08444-1Q.Seq.d
AACAATATGGTTCATTTGATGATCATCATTCTACTATTAAATTACAACAA
AAATTTAATGTTTTAATATATAATTGTCAACCATTTTTTGGAGGTGATGA
AGTTGTTGATGAATTATTGGAAGAGATTGGAGGATATTTAGTACCACATT
CAAATTATATTTATTTCTGTGCAAATGTTTTATATTTATTCACACCAACT
TATCATTTTTCAACGTTGACATCAATACCAAAATGGGTTGACCTCTATTT
AAATTATTATTGGAGTTGGATAGATTTCAATAAGGATTGGGATGAACGTT
GGTTATTCATCTTTTCAAGAGCAATTAAATTTGGCGTAAATATTGATTGG
ACACCCATTTTACCAATTCTTTATACTAAAATGTTGAAGGCTTTGGATTT
AGGCGTTGGCTCACCATCAATGGCACACCTAAAACCTGTCAAACATAAAA
TACCAGAAATCTTTAGATTAACACGTGAAGATAGAATGGAATTTCATTCA
ATTGGTAAAATCACTGCCCTGTCAATNAATTC
Gap no gap
Contig length 532
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1541326
End point 1540794
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U08444
List of clone(s) 

est1=SFI854Z,1,533
est2=SFI754Z,56,533
Translated Amino Acid sequence 
QYGSFDDHHSTIKLQQKFNVLIYNCQPFFGGDEVVDELLEEIGGYLVPHSNYIYFCANVL
YLFTPTYHFSTLTSIPKWVDLYLNYYWSWIDFNKDWDERWLFIFSRAIKFGVNIDWTPIL
PILYTKMLKALDLGVGSPSMAHLKPVKHKIPEIFRLTREDRMEFHSIGKITALSXN
Translated Amino Acid sequence (All Frames) 
Frame A:
nnmvhlmiiilllnynknlmf*yiivnhflevmkllmnywkrledi*yhiqiifisvqmf
yiyshqliifqr*hqyqngltsi*iiigvg*isirigmnvgyssfqeqlnla*ilighpf
yqffilkc*rlwi*alahhqwht*nlsnikyqksld*hvkiewnfiqlvkslpcqxi


Frame B:
tiwfi**ssfyy*ittki*cfni*lstifwr**sc**iigrdwrifsttfklylflckcf
ifihtnlsffnvdintkmg*plfkllleldrfq*glg*tlvihlfksn*iwrky*ldthf
tnsly*nvegfgfrrwltingtpktcqt*ntrnl*int*r*ngisfnw*nhcpvnxf


Frame C:
QYGSFDDHHSTIKLQQKFNVLIYNCQPFFGGDEVVDELLEEIGGYLVPHSNYIYFCANVL
YLFTPTYHFSTLTSIPKWVDLYLNYYWSWIDFNKDWDERWLFIFSRAIKFGVNIDWTPIL
PILYTKMLKALDLGVGSPSMAHLKPVKHKIPEIFRLTREDRMEFHSIGKITALSXN
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08444-1 (Contig-U08444-1Q)
/CSM_Contig/Contig-U08444-1Q.Seq.d
         (532 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08444-1 (Contig-U08444-1Q) /CSM_Contig/Conti...  1049  0.0
Contig-U10089-1 (Contig-U10089-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12001-1 (Contig-U12001-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11647-1 (Contig-U11647-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11376-1 (Contig-U11376-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U10879-1 (Contig-U10879-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U09470-1 (Contig-U09470-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U09452-1 (Contig-U09452-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12960-1 (Contig-U12960-1Q) /CSM_Contig/Conti...    28  9.0

>Contig-U08444-1 (Contig-U08444-1Q) /CSM_Contig/Contig-U08444-1Q.Seq.d
          Length = 532

 Score = 1049 bits (529), Expect = 0.0
 Identities = 532/532 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaatatggttcatttgatgatcatcattctactattaaattacaacaaaaatttaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aacaatatggttcatttgatgatcatcattctactattaaattacaacaaaaatttaatg 60

                                                                       
Query: 61  ttttaatatataattgtcaaccattttttggaggtgatgaagttgttgatgaattattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttttaatatataattgtcaaccattttttggaggtgatgaagttgttgatgaattattgg 120

                                                                       
Query: 121 aagagattggaggatatttagtaccacattcaaattatatttatttctgtgcaaatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagagattggaggatatttagtaccacattcaaattatatttatttctgtgcaaatgttt 180

                                                                       
Query: 181 tatatttattcacaccaacttatcatttttcaacgttgacatcaataccaaaatgggttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatatttattcacaccaacttatcatttttcaacgttgacatcaataccaaaatgggttg 240

                                                                       
Query: 241 acctctatttaaattattattggagttggatagatttcaataaggattgggatgaacgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acctctatttaaattattattggagttggatagatttcaataaggattgggatgaacgtt 300

                                                                       
Query: 301 ggttattcatcttttcaagagcaattaaatttggcgtaaatattgattggacacccattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggttattcatcttttcaagagcaattaaatttggcgtaaatattgattggacacccattt 360

                                                                       
Query: 361 taccaattctttatactaaaatgttgaaggctttggatttaggcgttggctcaccatcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 taccaattctttatactaaaatgttgaaggctttggatttaggcgttggctcaccatcaa 420

                                                                       
Query: 421 tggcacacctaaaacctgtcaaacataaaataccagaaatctttagattaacacgtgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggcacacctaaaacctgtcaaacataaaataccagaaatctttagattaacacgtgaag 480

                                                               
Query: 481 atagaatggaatttcattcaattggtaaaatcactgccctgtcaatnaattc 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atagaatggaatttcattcaattggtaaaatcactgccctgtcaatnaattc 532


>Contig-U10089-1 (Contig-U10089-1Q) /CSM_Contig/Contig-U10089-1Q.Seq.d
          Length = 1497

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 95  tgatgaagttgttgatgaa 113
           |||||||||||||||||||
Sbjct: 698 tgatgaagttgttgatgaa 680


>Contig-U12001-1 (Contig-U12001-1Q) /CSM_Contig/Contig-U12001-1Q.Seq.d
          Length = 1576

 Score = 34.2 bits (17), Expect = 0.15
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                
Query: 98  tgaagttgttgatgaattatt 118
           ||||| |||||||||||||||
Sbjct: 983 tgaagatgttgatgaattatt 963


 Score = 30.2 bits (15), Expect = 2.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 247 atttaaattattatt 261
           |||||||||||||||
Sbjct: 381 atttaaattattatt 367


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,187
Number of Sequences: 6905
Number of extensions: 10187
Number of successful extensions: 1152
Number of sequences better than 10.0: 369
length of query: 532
length of database: 5,674,871
effective HSP length: 16
effective length of query: 516
effective length of database: 5,564,391
effective search space: 2871225756
effective search space used: 2871225756
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.13
Homology vs DNA 
Query= Contig-U08444-1 (Contig-U08444-1Q) /CSM_Contig/Contig-U08444-1Q.Seq.d
         (532 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ402907) Dictyostelium discoideum cDNA clone:dds18l14, 3' ...  1019   0.0    1
(BJ402906) Dictyostelium discoideum cDNA clone:dds18l13, 3' ...   940   0.0    1
(AC151090) Bos taurus clone CH240-117L14, WORKING DRAFT SEQU...    46   0.009  5
(BH715230) BOHVQ41TF BO_2_3_KB Brassica oleracea genomic clo...    50   0.081  1
(AM632031) Entamoeba dispar GSS, clone dispar83g05.q1k.            40   0.18   2
(EJ721748) 1092959456294 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.32   1
(EJ688883) 1092955238844 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.32   1
(DT357332) JGI_CABY681.rev CABY Pimephales promelas 2-14 day...    48   0.32   1
(DT286951) JGI_CAAV12997.rev CAAV Pimephales promelas testis...    48   0.32   1
(DT284532) JGI_CAAV11605.rev CAAV Pimephales promelas testis...    48   0.32   1
(DT283123) JGI_CAAV10784.rev CAAV Pimephales promelas testis...    48   0.32   1
(DT276825) JGI_CAAV7157.fwd CAAV Pimephales promelas testis ...    48   0.32   1
(DT276824) JGI_CAAV7157.rev CAAV Pimephales promelas testis ...    48   0.32   1
(DT274041) JGI_CAAV5543.rev CAAV Pimephales promelas testis ...    48   0.32   1
(DT272423) JGI_CAAV4621.rev CAAV Pimephales promelas testis ...    48   0.32   1
(DT272029) JGI_CAAV4399.fwd CAAV Pimephales promelas testis ...    48   0.32   1
(DT272028) JGI_CAAV4399.rev CAAV Pimephales promelas testis ...    48   0.32   1
(DT259012) JGI_CAAU8990.rev CAAU Pimephales promelas brain 7...    48   0.32   1
(DT251346) JGI_CAAU4756.rev CAAU Pimephales promelas brain 7...    48   0.32   1
(DT241035) JGI_CAAT11756.rev CAAT Pimephales promelas brain ...    48   0.32   1
(DT236777) JGI_CAAT9435.rev CAAT Pimephales promelas brain 7...    48   0.32   1
(DT234484) JGI_CAAT8194.rev CAAT Pimephales promelas brain 7...    48   0.32   1
(DT230798) JGI_CAAT5040.rev CAAT Pimephales promelas brain 7...    48   0.32   1
(DT222936) JGI_CAAS18025.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT222668) JGI_CAAS17882.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT222638) JGI_CAAS17865.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT210316) JGI_CAAS16440.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT209761) JGI_CAAS16137.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT209645) JGI_CAAS16072.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT209295) JGI_CAAS15878.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT208996) JGI_CAAS15717.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT208658) JGI_CAAS15531.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT201828) JGI_CAAS11036.rev CAAS Pimephales promelas brain ...    48   0.32   1
(DT200190) JGI_CAAS7456.rev CAAS Pimephales promelas brain 7...    48   0.32   1
(DT198381) JGI_CAAS6043.rev CAAS Pimephales promelas brain 7...    48   0.32   1
(DT196284) JGI_CAAS4515.rev CAAS Pimephales promelas brain 7...    48   0.32   1
(DT195274) JGI_CAAS3961.rev CAAS Pimephales promelas brain 7...    48   0.32   1
(DT194675) JGI_CAAS3625.rev CAAS Pimephales promelas brain 7...    48   0.32   1
(DT155369) JGI_ANNO32929.rev ANNO Pimephales promelas Whole ...    48   0.32   1
(DT116138) JGI_ANNO4165.rev ANNO Pimephales promelas Whole (...    48   0.32   1
(AC153000) Medicago truncatula clone mth2-94c2, complete seq...    44   0.39   3
(AC202357) Medicago truncatula clone mth2-52g1, WORKING DRAF...    38   0.62   5
(EJ560800) 1092959550982 Global-Ocean-Sampling_GS-29-01-01-1...    44   0.62   2
(CT231484) Sus scrofa genomic clone CH242-274B22, genomic su...    42   0.63   2
(CT299844) Sus scrofa genomic clone CH242-209A19, genomic su...    42   0.64   2
(CU915389) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   0.80   6
(Z70780) Caenorhabditis elegans Cosmid F46B6.                      34   0.86   4
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    32   1.1    9
(BX005290) Zebrafish DNA sequence from clone CH211-127M10 in...    46   1.3    1
(AL954836) Zebrafish DNA sequence from clone CH211-147N1 in ...    46   1.3    1
(AC125210) Mus musculus BAC clone RP23-148P22 from 18, compl...    46   1.3    1
(AC117949) Mus musculus BAC clone RP23-197M6 from chromosome...    46   1.3    1
(AC132078) Canis familiaris clone RP81-406J22, WORKING DRAFT...    46   1.3    1
(CT033843) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(CE133000) tigr-gss-dog-17000326259093 Dog Library Canis lup...    46   1.3    1
(CE002478) tigr-gss-dog-17000320888067 Dog Library Canis lup...    46   1.3    1
(AG288351) Mus musculus molossinus DNA, clone:MSMg01-062F17....    46   1.3    1
(EL653667) AGENCOURT_103365714 NICHD_XGC_tropInt_63 Xenopus ...    46   1.3    1
(CN671957) A0913B07-5 NIA Mouse Embryonic Stem (ES) cell (Li...    46   1.3    1
(AC163607) Bos taurus clone CH240-93N1, WORKING DRAFT SEQUEN...    44   1.7    2
(AC179902) Strongylocentrotus purpuratus clone R3-1003M22, W...    36   1.9    4
(AC149303) Medicago truncatula clone mth2-76a20, complete se...    38   2.2    4
(AC007188) Arabidopsis thaliana chromosome 2 clone T4D8 map ...    38   2.4    4
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    36   2.5    5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   2.6    8
(BX571887) Mouse DNA sequence from clone RP23-195E16 on chro...    38   2.8    3
(CU928233) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.9    5
(AC007187) Arabidopsis thaliana chromosome 2 clone F7E22 map...    38   2.9    4
(AL596245) Human DNA sequence from clone RP11-573C10 on chro...    44   3.1    7
(AC144928) Medicago truncatula clone mth2-8a18, complete seq...    36   3.5    5
(CU104728) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.5    2
(AM485367) Vitis vinifera contig VV78X123404.6, whole genome...    36   3.7    3
(AC221804) Bos taurus clone CH240-384L14, WORKING DRAFT SEQU...    42   3.8    3
(CT025687) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.9    7
(CR225349) Reverse strand read from insert in 5'HPRT inserti...    34   4.3    2
(AC157373) Medicago truncatula chromosome 7 clone mth2-108g9...    36   4.4    3
(AE017263) Mesoplasma florum L1 complete genome.                   32   4.7    11
(CR735141) Zebrafish DNA sequence from clone CH211-128E9 in ...    44   5.0    1
(BX957280) Zebrafish DNA sequence from clone DKEY-265G1 in l...    44   5.0    1
(AC151674) Medicago truncatula clone mth2-28i16, complete se...    44   5.0    1
(AJ289890) Pseudopauesia prunicola partial ef-1alpha gene el...    44   5.0    1
(S82592) Evi-1=Evi-1 protein {3' region, deletion region} [h...    44   5.0    1
(AP005209) Homo sapiens genomic DNA, chromosome 18 clone:RP1...    44   5.0    1
(AC078985) Homo sapiens 3q BAC RP11-82C9 (Roswell Park Cance...    44   5.0    1
(AC009890) Genomic Sequence For Homo sapiens Clone H_NH0262L...    44   5.0    1
(AC130425) Homo sapiens chromosome 3 clone RP11-33A1, *** SE...    44   5.0    1
(AC129853) Rattus norvegicus clone CH230-229L15, *** SEQUENC...    44   5.0    1
(AC098751) Rattus norvegicus clone CH230-27K19, *** SEQUENCI...    44   5.0    1
(AC083881) Homo sapiens chromosome X clone RP11-743J9, WORKI...    44   5.0    1
(AP001015) Homo sapiens genomic DNA, chromosome 18p11.3, clo...    44   5.0    1
(AC190648) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    44   5.0    1
(AC187471) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    44   5.0    1
(AC010788) Homo sapiens chromosome 18 clone RP11-175O13 map ...    44   5.0    1
(AC007480) Homo sapiens clone RP11-33A1, WORKING DRAFT SEQUE...    44   5.0    1
(EK395636) 1095469520098 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.0    1
(EK389477) 1095469494616 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.0    1
(EK345893) 1095467504233 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.0    1
(EK204977) 1095460070277 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.0    1
(EJ479077) 1095403458695 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.0    1
(DX453572) MAMAI70TR MA4 Musa acuminata genomic clone MA4-5L...    44   5.0    1

>(BJ402907) Dictyostelium discoideum cDNA clone:dds18l14, 3' end,
           single read.
          Length = 534

 Score = 1019 bits (514), Expect = 0.0
 Identities = 517/518 (99%)
 Strand = Plus / Minus


Query: 1   aacaatatggttcatttgatgatcatcattctactattaaattacaacaaaaatttaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aacaatatggttcatttgatgatcatcattctactattaaattacaacaaaaatttaatg 475


Query: 61  ttttaatatataattgtcaaccattttttggaggtgatgaagttgttgatgaattattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttttaatatataattgtcaaccattttttggaggtgatgaagttgttgatgaattattgg 415


Query: 121 aagagattggaggatatttagtaccacattcaaattatatttatttctgtgcaaatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 aagagattggaggatatttagtaccacattcaaattatatttatttctgtgcaaatgttt 355


Query: 181 tatatttattcacaccaacttatcatttttcaacgttgacatcaataccaaaatgggttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tatatttattcacaccaacttatcatttttcaacgttgacatcaataccaaaatgggttg 295


Query: 241 acctctatttaaattattattggagttggatagatttcaataaggattgggatgaacgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acctctatttaaattattattggagttggatagatttcaataaggattgggatgaacgtt 235


Query: 301 ggttattcatcttttcaagagcaattaaatttggcgtaaatattgattggacacccattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ggttattcatcttttcaagagcaattaaatttggcgtaaatattgattggacacccattt 175


Query: 361 taccaattctttatactaaaatgttgaaggctttggatttaggcgttggctcaccatcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 taccaattctttatactaaaatgttgaaggctttggatttaggcgttggctcaccatcaa 115


Query: 421 tggcacacctaaaacctgtcaaacataaaataccagaaatctttagattaacacgtgaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tggcacacctaaaacctgtcaaacataaaataccagaaatctttagattaacacgtgaag 55


Query: 481 atagaatggaatttcattcaattggtaaaatcactgcc 518
           ||||||||||||||||||||||||||||||||| ||||
Sbjct: 54  atagaatggaatttcattcaattggtaaaatcattgcc 17

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 719,918,079
Number of extensions: 44818941
Number of successful extensions: 3749125
Number of sequences better than 10.0: 131
Length of query: 532
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 509
Effective length of database: 93,106,754,628
Effective search space: 47391338105652
Effective search space used: 47391338105652
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08444-1 (Contig-U08444-1Q) /CSM_Contig/Contig-U08444-1Q.Seq.d
         (532 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6NRP2) RecName: Full=Proteasome activator complex subunit 4; A...    48   1e-04
(Q5SSW2) RecName: Full=Proteasome activator complex subunit 4; A...    48   2e-04
BC141381_1(BC141381|pid:none) Mus musculus proteasome (prosome, ...    48   2e-04
(Q14997) RecName: Full=Proteasome activator complex subunit 4; A...    46   5e-04
BC112169_1(BC112169|pid:none) Homo sapiens proteasome (prosome, ...    46   5e-04
D38521_1(D38521|pid:none) Homo sapiens KIAA0077 mRNA, partial cds.     46   5e-04
AP004007_6(AP004007|pid:none) Oryza sativa Japonica Group genomi...    45   9e-04
AL844506_207(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.18
EF408057_34(EF408057|pid:none) Uncultured bacterium putative pha...    35   1.5
AP008232_1973(AP008232|pid:none) Sodalis glossinidius str. 'mors...    34   2.0
AP003254_23(AP003254|pid:none) Oryza sativa Japonica Group genom...    33   3.4
AE014186_457(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.8
AB024034_15(AB024034|pid:none) Arabidopsis thaliana genomic DNA,...    32   7.5
FM992689_441(FM992689|pid:none) Candida dubliniensis CD36 chromo...    32   9.8

>(Q6NRP2) RecName: Full=Proteasome activator complex subunit 4;
           AltName: Full=Proteasome activator PA200;
           &BC070702_1(BC070702|pid:none)
          Length = 1828

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
 Frame = +3

Query: 63  LIYNCQPFFGGDEVVDELLEEIGGYLVPHSNYIYFCANVLYLFTPTYHFSTL--TSIPKW 236
           L+  C+P+F  D+   E+L+E    + P    +    + L LF PT     L       W
Sbjct: 163 LVKACRPYFP-DDATAEMLQEWLPLMCPFDVTMQKAISYLELFLPTSLPPDLHCKGFRLW 221

Query: 237 VDLYLNYYWSWIDFNKDWDERWLFIFSRAIKFGVN-IDWTPILPILYTKMLKALDLGVGS 413
            D +L   W  +     W+   + +F+R     +  IDW P +P ++T++L++L+L VGS
Sbjct: 222 FDEFLTL-WVSVQNLPQWEGHLVNLFARLANDNIGYIDWDPYVPKIFTRILRSLNLPVGS 280

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 902,257,618
Number of extensions: 19565964
Number of successful extensions: 46997
Number of sequences better than 10.0: 14
Number of HSP's gapped: 46976
Number of HSP's successfully gapped: 14
Length of query: 177
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 57
Effective length of database: 656,452,579
Effective search space: 37417797003
Effective search space used: 37417797003
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U08444-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 2
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0