Contig-U08405-1
Contig ID Contig-U08405-1
Contig update 2002. 9.13
Contig sequence
>Contig-U08405-1 (Contig-U08405-1Q) /CSM_Contig/Contig-U08405-1Q.Seq.d
CAATTTTAACATGTTTATCAGCAGGTGTTATCATTGGTGCTGGTTTTAAT
CATATCTTACCAGATGCAGCGGAAGAATTTCAATCATATGTAGAGGCAGT
GGCACCAGATAATAAATATGGTGATTTCCCATTCGCTCATACAATTACAA
TTGTAACAATGTTTGCATTAATTTGTGTTGATAAAATTTTAGTTAGTGGT
GGTCTAGATGGTGAAGCCGACCACAATCACATGGACTTAAGTCAACATAA
CCATCCAAGTCCACATGCTGCTGGTGAAATTGATTTAAATATTTATACAA
ATGGTGACGACGACGACGATGATGTAAATGAAGATCAAGAAGAGGATAGC
ACAAAAGATGATGAAAAAGAACATGGTCATGGTCATGGTCATGGACATGG
TCATAATAGTAGTAATAGTAGTAGTAATGGTCATGGACATGGTTTAAAAA
AAAAGAAAAAATCAAAAAAAGAGCATGGTCATGGTCATAATCATGATCAT
AGTTCAAATGGACATAGTCATAAGGATGAGAAGGATAGTGAGAAAGTAAA
TGTTTCAAGTAAAAGTAAAGCATGGGTATTCTTAGTTGCCCTATCACTTC
ATTCAATATTTGATGGATTAGGATTAGGATCAGAGACNCAAAAAGATAGT
TTCTATGGTTTATTAATCGCAGTTTTAGCACNCAAATTTTTGGATGGATT
GGTATTAGGTATTGCAATTAAATATGCTTATTTCTCTTTCAAATTCAGTT
GTATTGCATTGGTATTCGCAGCAGCTATGACNCCATTAGGTATTGGTATT
GGTATGGCTATATCAAGNGCCTATGAATCAAGTACTGATGCCTATTTAGT
TAAAGGTATCATTCTATCAATTACATGTGGTTCTTTTATTTATATCTCTC
NCATTGAATTATTACCATCTGGACTTTGTCAAAAAGGTTGGCCAAAATTA
AAATTGGCCGTTGCNTTCCTGGTTATTCCGTTAGGCAATT

Gap no gap
Contig length 990
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3999366
End point 4000358
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U08405
List of clone(s)

est1=SFG302E,1,991
est2=SSK308Z,32,445
Translated Amino Acid sequence
ILTCLSAGVIIGAGFNHILPDAAEEFQSYVEAVAPDNKYGDFPFAHTITIVTMFALICVD
KILVSGGLDGEADHNHMDLSQHNHPSPHAAGEIDLNIYTNGDDDDDDVNEDQEEDSTKDD
EKEHGHGHGHGHGHNSSNSSSNGHGHGLKKKKKSKKEHGHGHNHDHSSNGHSHKDEKDSE
KVNVSSKSKAWVFLVALSLHSIFDGLGLGSETQKDSFYGLLIAVLAXKFLDGLVLGIAIK
YAYFSFKFSCIALVFAAAMTPLGIGIGMAISXAYESSTDAYLVKGIILSITCGSFIYISX
IELLPSGLCQKGWPKLKLAVAFLVIPLGN


Translated Amino Acid sequence (All Frames)
Frame A:
qf*hvyqqvlslvlvliisyqmqrknfnhm*rqwhqiinmvishsliqlql*qclh*fvl
ikf*lvvv*mvkpttitwt*vnitiqvhmllvkli*ifiqmvttttmm*mkikkriaqkm
mkknmvmvmvmdmviivvivvvmvmdmv*kkrknqkksmvmviimiivqmdivirmrriv
rk*mfqvkvkhgys*lpyhfiqylmd*d*dqrxkkivsmvy*sqf*hxnfwmdwy*vlql
nmlislsnsvvlhwysqql*xh*vlvlvwlyqxpmnqvlmpi*lkvsfyqlhvvllfisl
xlnyyhldfvkkvgqn*nwplxswlfr*ai


Frame B:
nfnmfisrcyhwcwf*syltrcsgrisiicrgsgtr**iw*fpirsynyncnnvcinlc*
*nfs*wwsrw*srpqshglkst*pskstccw*n*fkylykw*rrrr*ck*rsrrg*hkr*
*krtwswswswtws********wswtwfkkkekikkrawsws*s*s*fkwt*s*g*eg**
eskcfk*k*smgilscpitsfni*wiririrdxkr*flwfinrsfstqifgwigirycn*
iclflfqiqlycigirssydxirywywygyikxl*iky*clfs*ryhsinymwffylyls
h*iitiwtlskrlakikigrcxpgysvrq


Frame C:
ILTCLSAGVIIGAGFNHILPDAAEEFQSYVEAVAPDNKYGDFPFAHTITIVTMFALICVD
KILVSGGLDGEADHNHMDLSQHNHPSPHAAGEIDLNIYTNGDDDDDDVNEDQEEDSTKDD
EKEHGHGHGHGHGHNSSNSSSNGHGHGLKKKKKSKKEHGHGHNHDHSSNGHSHKDEKDSE
KVNVSSKSKAWVFLVALSLHSIFDGLGLGSETQKDSFYGLLIAVLAXKFLDGLVLGIAIK
YAYFSFKFSCIALVFAAAMTPLGIGIGMAISXAYESSTDAYLVKGIILSITCGSFIYISX
IELLPSGLCQKGWPKLKLAVAFLVIPLGN


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U08405-1 (Contig-U08405-1Q)
/CSM_Contig/Contig-U08405-1Q.Seq.d
(990 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U08405-1 (Contig-U08405-1Q) /CSM_Contig/Conti... 995 0.0
Contig-U07986-1 (Contig-U07986-1Q) /CSM_Contig/Conti... 309 3e-84
Contig-U10688-1 (Contig-U10688-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U09860-1 (Contig-U09860-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U03010-1 (Contig-U03010-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U01835-1 (Contig-U01835-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U13915-1 (Contig-U13915-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U10883-1 (Contig-U10883-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12907-1 (Contig-U12907-1Q) /CSM_Contig/Conti... 40 0.004

>Contig-U08405-1 (Contig-U08405-1Q) /CSM_Contig/Contig-U08405-1Q.Seq.d
Length = 990

Score = 995 bits (502), Expect = 0.0
Identities = 520/520 (100%)
Strand = Plus / Plus


Query: 471 gagcatggtcatggtcataatcatgatcatagttcaaatggacatagtcataaggatgag 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gagcatggtcatggtcataatcatgatcatagttcaaatggacatagtcataaggatgag 530


Query: 531 aaggatagtgagaaagtaaatgtttcaagtaaaagtaaagcatgggtattcttagttgcc 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaggatagtgagaaagtaaatgtttcaagtaaaagtaaagcatgggtattcttagttgcc 590


Query: 591 ctatcacttcattcaatatttgatggattaggattaggatcagagacncaaaaagatagt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ctatcacttcattcaatatttgatggattaggattaggatcagagacncaaaaagatagt 650


Query: 651 ttctatggtttattaatcgcagttttagcacncaaatttttggatggattggtattaggt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttctatggtttattaatcgcagttttagcacncaaatttttggatggattggtattaggt 710


Query: 711 attgcaattaaatatgcttatttctctttcaaattcagttgtattgcattggtattcgca 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 attgcaattaaatatgcttatttctctttcaaattcagttgtattgcattggtattcgca 770


Query: 771 gcagctatgacnccattaggtattggtattggtatggctatatcaagngcctatgaatca 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gcagctatgacnccattaggtattggtattggtatggctatatcaagngcctatgaatca 830


Query: 831 agtactgatgcctatttagttaaaggtatcattctatcaattacatgtggttcttttatt 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 agtactgatgcctatttagttaaaggtatcattctatcaattacatgtggttcttttatt 890


Query: 891 tatatctctcncattgaattattaccatctggactttgtcaaaaaggttggccaaaatta 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tatatctctcncattgaattattaccatctggactttgtcaaaaaggttggccaaaatta 950


Query: 951 aaattggccgttgcnttcctggttattccgttaggcaatt 990
||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 aaattggccgttgcnttcctggttattccgttaggcaatt 990


Score = 882 bits (445), Expect = 0.0
Identities = 445/445 (100%)
Strand = Plus / Plus


Query: 1 caattttaacatgtttatcagcaggtgttatcattggtgctggttttaatcatatcttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caattttaacatgtttatcagcaggtgttatcattggtgctggttttaatcatatcttac 60


Query: 61 cagatgcagcggaagaatttcaatcatatgtagaggcagtggcaccagataataaatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cagatgcagcggaagaatttcaatcatatgtagaggcagtggcaccagataataaatatg 120


Query: 121 gtgatttcccattcgctcatacaattacaattgtaacaatgtttgcattaatttgtgttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgatttcccattcgctcatacaattacaattgtaacaatgtttgcattaatttgtgttg 180


Query: 181 ataaaattttagttagtggtggtctagatggtgaagccgaccacaatcacatggacttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataaaattttagttagtggtggtctagatggtgaagccgaccacaatcacatggacttaa 240


Query: 241 gtcaacataaccatccaagtccacatgctgctggtgaaattgatttaaatatttatacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtcaacataaccatccaagtccacatgctgctggtgaaattgatttaaatatttatacaa 300


Query: 301 atggtgacgacgacgacgatgatgtaaatgaagatcaagaagaggatagcacaaaagatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atggtgacgacgacgacgatgatgtaaatgaagatcaagaagaggatagcacaaaagatg 360


Query: 361 atgaaaaagaacatggtcatggtcatggtcatggacatggtcataatagtagtaatagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgaaaaagaacatggtcatggtcatggtcatggacatggtcataatagtagtaatagta 420


Query: 421 gtagtaatggtcatggacatggttt 445
|||||||||||||||||||||||||
Sbjct: 421 gtagtaatggtcatggacatggttt 445


Score = 38.2 bits (19), Expect = 0.018
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 364 aaaaagaacatggtcatggtcat 386
||||||| |||||||||||||||
Sbjct: 466 aaaaagagcatggtcatggtcat 488


Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 378 catggtcatggtcat 392
|||||||||||||||
Sbjct: 474 catggtcatggtcat 488


Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 474 catggtcatggtcat 488
|||||||||||||||
Sbjct: 378 catggtcatggtcat 392


Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 474 catggtcatggtcat 488
|||||||||||||||
Sbjct: 372 catggtcatggtcat 386


>Contig-U07986-1 (Contig-U07986-1Q) /CSM_Contig/Contig-U07986-1Q.Seq.d
Length = 694

Score = 309 bits (156), Expect = 3e-84
Identities = 274/314 (87%)
Strand = Plus / Plus


Query: 132 ttcgctcatacaattacaattgtaacaatgtttgcattaatttgtgttgataaaatttta 191
||||| ||| ||||| ||||| || |||||||||| |||||||| |||| |||||||||
Sbjct: 306 ttcgcccatccaattccaattttaccaatgtttgccttaatttgcgttgctaaaattttc 365


Query: 192 gttagtggtggtctagatggtgaagccgaccacaatcacatggacttaagtcaacataac 251
||||||||||| || ||||||| | ||| || || || ||||| ||| ||||| ||| ||
Sbjct: 366 gttagtggtggcctcgatggtgcacccgcccccattcccatgggctttagtcaccattac 425


Query: 252 catccaagtccacatgctgctggtgaaattgatttaaatatttatacaaatggtgacgac 311
| ||||||||| ||||||||||| ||||||||||||||||||| | |||||||||||| |
Sbjct: 426 cctccaagtccccatgctgctggngaaattgatttaaatatttttccaaatggtgacgcc 485


Query: 312 gacgacgatgatgtaaatgaagatcaagaagaggatagcacaaaagatgatgaaaaagaa 371
| || || || | |||||| ||||| ||||| |||| || ||||||||| ||||||||||
Sbjct: 486 gccgccgttgttntaaatggagatccagaaggggattgcccaaaagatgttgaaaaagaa 545


Query: 372 catggtcatggtcatggtcatggacatggtcataatagtagtaatagtagtagtaatggt 431
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 546 catggtcatggtcatggtcatgggcatggtcataatagtagtaatagtagttgtaatggt 605


Query: 432 catggacatggttt 445
||||||||||||||
Sbjct: 606 catggacatggttt 619


Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 474 catggtcatggtcat 488
|||||||||||||||
Sbjct: 546 catggtcatggtcat 560


Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 474 catggtcatggtcat 488
|||||||||||||||
Sbjct: 552 catggtcatggtcat 566


>Contig-U10688-1 (Contig-U10688-1Q) /CSM_Contig/Contig-U10688-1Q.Seq.d
Length = 1738

Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 403 ataatagtagtaatagtagtagtaat 428
||||||||||||||| ||||||||||
Sbjct: 427 ataatagtagtaataatagtagtaat 452


Score = 32.2 bits (16), Expect = 1.1
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 403 ataatagtagtaatagtagtagta 426
||||||||||||||| || |||||
Sbjct: 439 ataatagtagtaataataatagta 462


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,238
Number of Sequences: 6905
Number of extensions: 13238
Number of successful extensions: 1840
Number of sequences better than 10.0: 300
length of query: 990
length of database: 5,674,871
effective HSP length: 16
effective length of query: 974
effective length of database: 5,564,391
effective search space: 5419716834
effective search space used: 5419716834
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA
Query= Contig-U08405-1 (Contig-U08405-1Q) /CSM_Contig/Contig-U08405-1Q.Seq.d
(990 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ400388) Dictyostelium discoideum cDNA clone:dds13d01, 3' ... 989 0.0 1
(BJ391292) Dictyostelium discoideum cDNA clone:dds13d01, 5' ... 729 0.0 2
(C91460) Dictyostelium discoideum slug cDNA, clone SSK308. 666 0.0 2
(C90883) Dictyostelium discoideum slug cDNA, clone SSJ266. 178 9e-42 2
(BG522063) 17-83 Stevia field grown leaf cDNA Stevia rebaudi... 40 0.002 2
(CO093998) GR__Ea15N21.f GR__Ea Gossypium raimondii cDNA clo... 56 0.003 1
(AC211400) Zea mays chromosome 6 clone CH201-9K9; ZMMBBc0009... 46 0.005 3
(AC198985) Zea mays chromosome 10 clone CH201-419L20; ZMMBBc... 46 0.008 2
(AC195311) Zea mays chromosome 5 clone CH201-455J16; ZMMBBc0... 46 0.009 2
(AC205844) Zea mays chromosome 4 clone CH201-234A9; ZMMBBc02... 46 0.010 3
(AC197831) Zea mays chromosome 3 clone ZMMBBb-4K20; ZMMBBb00... 54 0.010 1
(AC183892) Zea mays chromosome 3 clone CH201-390C23; ZMMBBc0... 54 0.010 1
(EK396159) 1095469522068 Global-Ocean-Sampling_GS-31-01-01-1... 54 0.010 1
(AC196293) Zea mays chromosome 6 clone CH201-548F3; ZMMBBc05... 46 0.012 3
(AC213799) Zea mays chromosome 3 clone CH201-130J12; ZMMBBc0... 46 0.017 3
(AC203859) Zea mays chromosome 2 clone CH201-159C6; ZMMBBc01... 46 0.031 2
(AR546949) Sequence 2080 from patent US 6747137. 44 0.043 2
(AC209331) Zea mays chromosome 6 clone CH201-327A9; ZMMBBc03... 46 0.050 3
(AC212069) Zea mays chromosome 7 clone CH201-282H23; ZMMBBc0... 46 0.050 3
(AC217895) Zea mays chromosome 7 clone CH201-317F1; ZMMBBc03... 46 0.076 4
(AC197348) Zea mays chromosome unknown clone CH201-307I14; Z... 46 0.11 2
(AC186844) Zea mays chromosome 7 clone CH201-418G17; ZMMBBc0... 46 0.11 2
(AC182622) Zea mays chromosome 2 clone CH201-134C10; ZMMBBc0... 44 0.11 2
(AC197138) Zea mays chromosome 1 clone CH201-132N1; ZMMBBc01... 48 0.12 2
(AC188721) Zea mays chromosome 7 clone CH201-149M7; ZMMBBc01... 46 0.14 3
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.16 1
(AP004150) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.16 1
(AK106802) Oryza sativa Japonica Group cDNA clone:002-116-B1... 50 0.16 1
(EA698130) Sequence 77009 from patent US 7365185. 50 0.16 1
(AC216272) Zea mays chromosome 3 clone CH201-150L8; ZMMBBc01... 50 0.16 1
(AC197078) Zea mays chromosome 3 clone CH201-218O13; ZMMBBc0... 50 0.16 1
(AQ289917) nbxb0036C15f CUGI Rice BAC Library Oryza sativa J... 50 0.16 1
(CK052822) 62638rsicek_7164.y1 Oryza sativa cv. PA64s panicl... 50 0.16 1
(EY364404) CAWZ9370.fwd CAWZ Helobdella robusta Primary Late... 50 0.16 1
(AC211976) Zea mays chromosome 2 clone CH201-281P4; ZMMBBc02... 38 0.26 4
(AC168666) Strongylocentrotus purpuratus clone R3-3015M17, W... 40 0.33 4
(AC206174) Zea mays chromosome 5 clone CH201-47D13; ZMMBBc00... 46 0.34 2
(AC191081) Zea mays chromosome 7 clone CH201-329N18; ZMMBBc0... 38 0.36 2
(AC196396) Zea mays chromosome 7 clone ZMMBBb-520M3; ZMMBBb0... 38 0.36 2
(AC209878) Zea mays chromosome 2 clone CH201-321H2; ZMMBBc03... 46 0.38 2
(AC209087) Zea mays chromosome 2 clone ZMMBBb-128G21; ZMMBBb... 44 0.40 3
(AC226232) Zea mays chromosome 4 clone CH201-230K6; ZMMBBc02... 46 0.42 2
(CT769318) Paramecium tetraurelia 5-PRIME EST from clone LK0... 36 0.46 2
(CT787382) Paramecium tetraurelia 5-PRIME EST from clone LK0... 36 0.46 2
(AC231390) Zea mays chromosome 5 clone CH201-68C1; ZMMBBc006... 46 0.55 3
(AZ687107) ENTKV55TR Entamoeba histolytica Sheared DNA Entam... 46 0.60 2
(AX489337) Sequence 6637 from Patent WO02053728. 40 0.61 2
(AC198609) Zea mays chromosome 10 clone CH201-118A8; ZMMBBc0... 46 0.63 3
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.64 1
(AL928780) Oryza sativa chromosome 12, . BAC OSJNBa0018C20 o... 48 0.64 1
(AC109898) Rattus norvegicus clone CH230-313H16, *** SEQUENC... 48 0.64 1
(AC226827) Medicago truncatula chromosome 2 clone mth2-156k5... 48 0.64 1
(AC213525) Zea mays chromosome 1 clone CH201-379A14; ZMMBBc0... 48 0.64 1
(AC209801) Zea mays chromosome 1 clone CH201-243L15; ZMMBBc0... 48 0.64 1
(AC177525) Strongylocentrotus purpuratus clone R3-9O6, WORKI... 48 0.64 1
(DX508610) 703_4_14168720_16654_43575_081 Arachis batizocoi ... 48 0.64 1
(DH542813) Rattus norvegicus DNA, BAC clone: RNB1-048D06, 3'... 48 0.64 1
(CW489007) fsbb001f265l03f0 Sorghum methylation filtered lib... 48 0.64 1
(CL306269) ZMMBBb0094K10r ZMMBBb (HindIII) Zea mays subsp. m... 48 0.64 1
(CL260006) ZMMBBb0615C01f ZMMBBb (HindIII) Zea mays subsp. m... 48 0.64 1
(CG915817) ZMMBBb0381O15.f ZMMBBb Zea mays subsp. mays genom... 48 0.64 1
(EB850491) 7348125 KZ68 Danio rerio cDNA clone 2787517, mRNA... 48 0.64 1
(DT553123) EST1063763 GH_TMO Gossypium hirsutum cDNA, mRNA s... 48 0.64 1
(CO114825) GR__Eb016D03.r GR__Eb Gossypium raimondii cDNA cl... 48 0.64 1
(CI271861) Oryza sativa Japonica Group cDNA, clone: 074-M153... 48 0.64 1
(CF433988) NIT1_31_H12.g1_A002 Nitrogen-deficient seedlings ... 48 0.64 1
(CF054634) QCN30h12.yg QCN Zea mays cDNA clone QCN30h12, mRN... 48 0.64 1
(BY990427) Physcomitrella patens subsp. patens cDNA clone: P... 48 0.64 1
(BY988961) Physcomitrella patens subsp. patens cDNA clone: P... 48 0.64 1
(BY979748) Physcomitrella patens subsp. patens cDNA clone: P... 48 0.64 1
(BY972243) Physcomitrella patens subsp. patens cDNA clone: P... 48 0.64 1
(BJ159775) Physcomitrella patens subsp. patens cDNA clone:pp... 48 0.64 1
(BJ157965) Physcomitrella patens subsp. patens cDNA clone:pp... 48 0.64 1
(BG158127) EM1_8_G11.b1_A002 Embryo 1 (EM1) Sorghum bicolor ... 48 0.64 1
(FF552103) MOPEI13TF MOP Vigna unguiculata cDNA 5', mRNA seq... 48 0.64 1
(EY391431) CAXA9266.rev CAXA Helobdella robusta Subtracted L... 48 0.64 1
(EY383497) CAXA464.fwd CAXA Helobdella robusta Subtracted La... 48 0.64 1
(EY378219) CAXA17142.rev CAXA Helobdella robusta Subtracted ... 48 0.64 1
(EY365946) CAXA10477.rev CAXA Helobdella robusta Subtracted ... 48 0.64 1
(EY362271) CAWZ8160.rev CAWZ Helobdella robusta Primary Late... 48 0.64 1
(EY356450) CAWZ4365.rev CAWZ Helobdella robusta Primary Late... 48 0.64 1
(EY342214) CAWZ11664.fwd CAWZ Helobdella robusta Primary Lat... 48 0.64 1
(EY314894) CAWX25756.rev CAWX Helobdella robusta Primary Ear... 48 0.64 1
(EY313365) CAWX24917.fwd CAWX Helobdella robusta Primary Ear... 48 0.64 1
(EY303751) CAWX16881.rev CAWX Helobdella robusta Primary Ear... 48 0.64 1
(EY294070) CAWX11473.fwd CAWX Helobdella robusta Primary Ear... 48 0.64 1
(EY291825) CAWX10212.fwd CAWX Helobdella robusta Primary Ear... 48 0.64 1
(AC196141) Zea mays chromosome 4 clone ZMMBBb-161F8; ZMMBBb0... 46 0.65 4
(AC215901) Populus trichocarpa clone POP110-M11, complete se... 46 0.82 2
(AC213878) Zea mays chromosome 4 clone CH201-230G2; ZMMBBc02... 46 0.88 4
(AC209377) Zea mays chromosome 3 clone CH201-267O7; ZMMBBc02... 46 0.95 2
(AL844509) Plasmodium falciparum chromosome 13. 34 1.1 2
(AC199181) Zea mays chromosome 10 clone CH201-439D23; ZMMBBc... 46 1.2 4
(AC211143) Zea mays chromosome 2 clone CH201-187K2; ZMMBBc01... 40 1.2 2
(AC218901) Zea mays chromosome 8 clone CH201-477O19; ZMMBBc0... 46 1.2 3
(AC202158) Zea mays chromosome 1 clone ZMMBBb-135G22; ZMMBBb... 46 1.2 3
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 1.3 2
(AC196260) Zea mays chromosome 1 clone CH201-396I24; ZMMBBc0... 46 1.3 2
(AC206593) Zea mays chromosome 2 clone CH201-380D7; ZMMBBc03... 44 1.4 2
(AC212346) Zea mays chromosome 4 clone CH201-240M17; ZMMBBc0... 40 1.4 2

>(BJ400388) Dictyostelium discoideum cDNA clone:dds13d01, 3' end,
single read.
Length = 628

Score = 989 bits (499), Expect = 0.0
Identities = 519/520 (99%)
Strand = Plus / Minus


Query: 471 gagcatggtcatggtcataatcatgatcatagttcaaatggacatagtcataaggatgag 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gagcatggtcatggtcataatcatgatcatagttcaaatggacatagtcataaggatgag 462


Query: 531 aaggatagtgagaaagtaaatgtttcaagtaaaagtaaagcatgggtattcttagttgcc 590
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 461 aaggatagtgagaaagtaaatgtttcaagtaaaagtaaagcatgggtattnttagttgcc 402


Query: 591 ctatcacttcattcaatatttgatggattaggattaggatcagagacncaaaaagatagt 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctatcacttcattcaatatttgatggattaggattaggatcagagacncaaaaagatagt 342


Query: 651 ttctatggtttattaatcgcagttttagcacncaaatttttggatggattggtattaggt 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttctatggtttattaatcgcagttttagcacncaaatttttggatggattggtattaggt 282


Query: 711 attgcaattaaatatgcttatttctctttcaaattcagttgtattgcattggtattcgca 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 attgcaattaaatatgcttatttctctttcaaattcagttgtattgcattggtattcgca 222


Query: 771 gcagctatgacnccattaggtattggtattggtatggctatatcaagngcctatgaatca 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 gcagctatgacnccattaggtattggtattggtatggctatatcaagngcctatgaatca 162


Query: 831 agtactgatgcctatttagttaaaggtatcattctatcaattacatgtggttcttttatt 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 agtactgatgcctatttagttaaaggtatcattctatcaattacatgtggttcttttatt 102


Query: 891 tatatctctcncattgaattattaccatctggactttgtcaaaaaggttggccaaaatta 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tatatctctcncattgaattattaccatctggactttgtcaaaaaggttggccaaaatta 42


Query: 951 aaattggccgttgcnttcctggttattccgttaggcaatt 990
||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 aaattggccgttgcnttcctggttattccgttaggcaatt 2

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 989,679,488
Number of extensions: 59689791
Number of successful extensions: 5105771
Number of sequences better than 10.0: 1005
Length of query: 990
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 966
Effective length of database: 97,308,875,965
Effective search space: 94000374182190
Effective search space used: 94000374182190
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U08405-1 (Contig-U08405-1Q) /CSM_Contig/Contig-U08405-1Q.Seq.d
(990 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BC089142_1(BC089142|pid:none) Xenopus laevis hypothetical protei... 75 3e-12
AK314974_1(AK314974|pid:none) Homo sapiens cDNA, FLJ95890, highl... 71 6e-11
BC098254_1(BC098254|pid:none) Homo sapiens solute carrier family... 71 6e-11
BC096852_1(BC096852|pid:none) Danio rerio solute carrier family ... 69 2e-10
(O23039) RecName: Full=Zinc transporter 5; AltName: Full=ZRT/IRT... 69 3e-10
AJ401615_1(AJ401615|pid:none) Drosophila melanogaster mRNA for z... 68 4e-10
AM455752_3(AM455752|pid:none) Vitis vinifera contig VV78X246665.... 68 4e-10
AE013599_200(AE013599|pid:none) Drosophila melanogaster chromoso... 68 4e-10
AB168166_1(AB168166|pid:none) Macaca fascicularis testis cDNA cl... 68 6e-10
AY960753_1(AY960753|pid:none) Arabidopsis halleri subsp. gemmife... 68 6e-10
AE014297_2261(AE014297|pid:none) Drosophila melanogaster chromos... 68 6e-10
AY070921_1(AY070921|pid:none) Drosophila melanogaster RE02747 fu... 68 6e-10
BT045274_1(BT045274|pid:none) Salmo salar clone ssal-rgf-517-054... 68 6e-10
AM448776_2(AM448776|pid:none) Vitis vinifera contig VV78X278502.... 67 9e-10
(A4IIC5) RecName: Full=Zinc transporter ZIP3; AltName: Full=Zrt-... 67 1e-09
AB206397_1(AB206397|pid:none) Thlaspi japonicum TjZNT1 mRNA for ... 67 1e-09
AF065444_1(AF065444|pid:none) Pisum sativum root iron transporte... 67 1e-09
(Q9FIS2) RecName: Full=Probable zinc transporter 12; AltName: Fu... 67 1e-09
(Q6QQT1) RecName: Full=Zinc transporter ZIP1; AltName: Full=Zrt-... 67 1e-09
AF136579_1(AF136579|pid:none) Lycopersicon esculentum iron-regul... 66 2e-09
AF292029_1(AF292029|pid:none) Thlaspi caerulescens putative Zn t... 66 2e-09
AE013599_201(AE013599|pid:none) Drosophila melanogaster chromoso... 66 2e-09
AM455308_1(AM455308|pid:none) Vitis vinifera contig VV78X269517.... 65 3e-09
(Q8LE59) RecName: Full=Fe(2+) transport protein 3, chloroplastic... 65 3e-09
AY085604_1(AY085604|pid:none) Arabidopsis thaliana clone 15980 m... 65 3e-09
AM455308_2(AM455308|pid:none) Vitis vinifera contig VV78X269517.... 65 3e-09
BC169135_1(BC169135|pid:none) Xenopus tropicalis solute carrier ... 65 4e-09
BC157186_1(BC157186|pid:none) Xenopus tropicalis solute carrier ... 65 4e-09
AJ580313_1(AJ580313|pid:none) Arabidopsis halleri subsp. halleri... 65 4e-09
AY339056_1(AY339056|pid:none) Medicago truncatula metal transpor... 65 5e-09
EU626220_1(EU626220|pid:none) Ovis aries SLC39A3 mRNA, complete ... 65 5e-09
AK221833_1(AK221833|pid:none) Arabidopsis thaliana mRNA for puta... 64 6e-09
(Q8W246) RecName: Full=Zinc transporter 7; AltName: Full=ZRT/IRT... 64 6e-09
AB263746_1(AB263746|pid:none) Nicotiana tabacum IRT1 mRNA for ir... 64 6e-09
BT080294_1(BT080294|pid:none) Caligus clemensi clone ccle-evs-50... 64 1e-08
AY864924_1(AY864924|pid:none) Triticum aestivum zinc transporter... 64 1e-08
DQ490131_1(DQ490131|pid:none) Triticum aestivum putative zinc tr... 64 1e-08
AY456089_1(AY456089|pid:none) Thlaspi caerulescens Zn and Cd tra... 63 1e-08
AY456088_1(AY456088|pid:none) Thlaspi caerulescens Zn and Cd tra... 63 1e-08
(Q5U1X7) RecName: Full=Zinc transporter ZIP3; AltName: Full=Zrt-... 63 1e-08
AF275751_1(AF275751|pid:none) Thlaspi caerulescens ZIP-like zinc... 63 1e-08
AF133267_1(AF133267|pid:none) Thlaspi caerulescens Zn and Cd tra... 63 1e-08
(Q99K24) RecName: Full=Zinc transporter ZIP3; AltName: Full=Zrt-... 63 2e-08
BT077109_1(BT077109|pid:none) Caligus rogercresseyi clone crog-e... 63 2e-08
AY327039_1(AY327039|pid:none) Oryza sativa (japonica cultivar-gr... 62 2e-08
(Q5E960) RecName: Full=Zinc transporter ZIP3; AltName: Full=Zrt-... 62 2e-08
BC122570_1(BC122570|pid:none) Bos taurus solute carrier family 3... 62 2e-08
AM293350_1(AM293350|pid:none) Thlaspi caerulescens irt1-G gene f... 62 2e-08
AK075257_1(AK075257|pid:none) Homo sapiens cDNA FLJ90776 fis, cl... 62 2e-08
AK302600_1(AK302600|pid:none) Homo sapiens cDNA FLJ61483 complet... 62 2e-08
AJ243649_1(AJ243649|pid:none) Homo sapiens mRNA for putative met... 62 3e-08
AB175740_1(AB175740|pid:none) Thlaspi japonicum TjZNT2 mRNA for ... 62 3e-08
BC003152_1(BC003152|pid:none) Homo sapiens solute carrier family... 62 3e-08
AK159290_1(AK159290|pid:none) Mus musculus osteoclast-like cell ... 62 3e-08
AL358472_5(AL358472|pid:none) Human DNA sequence from clone RP11... 62 3e-08
AK293389_1(AK293389|pid:none) Homo sapiens cDNA FLJ57100 complet... 62 3e-08
BT045888_1(BT045888|pid:none) Salmo salar clone ssal-rgf-535-311... 62 3e-08
AC133572_20(AC133572|pid:none) Medicago truncatula clone mth2-10... 62 4e-08
AY960756_1(AY960756|pid:none) Arabidopsis halleri subsp. gemmife... 61 5e-08
AY805423_1(AY805423|pid:none) Fragaria x ananassa zinc transport... 61 5e-08
AY339059_1(AY339059|pid:none) Medicago truncatula metal transpor... 61 7e-08
AM293351_1(AM293351|pid:none) Thlaspi caerulescens irt1-P gene f... 61 7e-08
(Q38856) RecName: Full=Fe(2+) transport protein 1; AltName: Full... 60 9e-08
AM466959_1(AM466959|pid:none) Vitis vinifera contig VV78X079628.... 60 9e-08
BC091723_1(BC091723|pid:none) Xenopus laevis hypothetical protei... 60 1e-07
EF084282_1(EF084282|pid:none) Picea sitchensis clone WS0274_N02 ... 60 1e-07
BT064213_1(BT064213|pid:none) Zea mays full-length cDNA clone ZM... 60 1e-07
T15544(T15544)hypothetical protein C18A3.2 - Caenorhabditis eleg... 60 1e-07
EF086710_1(EF086710|pid:none) Picea sitchensis clone WS02745_J16... 59 3e-07
(Q8S3W4) RecName: Full=Probable zinc transporter 8; AltName: Ful... 58 4e-07
T29574(T29574)hypothetical protein F30B5.7 - Caenorhabditis eleg... 58 4e-07
AC157503_1(AC157503|pid:none) Medicago truncatula chromosome 2 c... 58 6e-07
AC183409_18(AC183409|pid:none) Asparagus officinalis clone B1-K2... 58 6e-07
(Q94EG9) RecName: Full=Zinc transporter 11; AltName: Full=ZRT/IR... 58 6e-07
AM487145_2(AM487145|pid:none) Vitis vinifera contig VV78X227169.... 58 6e-07
AC145388_15(AC145388|pid:none) Oryza sativa chromosome 3 BAC OSJ... 57 1e-06
AP008209_2209(AP008209|pid:none) Oryza sativa (japonica cultivar... 57 1e-06
(Q8W245) RecName: Full=Probable zinc transporter 10; AltName: Fu... 57 1e-06
EF026083_1(EF026083|pid:none) Solanum lycopersicum putative zinc... 56 2e-06
T21589(T21589) hypothetical protein F31C3.4 - Caenorhabditis ele... 56 2e-06
EU956392_1(EU956392|pid:none) Zea mays clone 1561988 zinc transp... 56 2e-06
EF147035_1(EF147035|pid:none) Populus trichocarpa clone WS01226_... 56 2e-06
EF146928_1(EF146928|pid:none) Populus trichocarpa clone WS01225_... 56 2e-06
BT062162_1(BT062162|pid:none) Zea mays full-length cDNA clone ZM... 55 3e-06
T19018(T19018)hypothetical protein C06G8.3 - Caenorhabditis eleg... 55 4e-06
AC092262_12(AC092262|pid:none) Oryza sativa (japonica cultivar-g... 55 4e-06
Z70306_7(Z70306|pid:none) Caenorhabditis elegans Cosmid C06G8, c... 55 4e-06
AJ580315_1(AJ580315|pid:none) Arabidopsis halleri subsp. halleri... 54 1e-05
(O64738) RecName: Full=Zinc transporter 6, chloroplastic; AltNam... 54 1e-05
AM050686_5(AM050686|pid:none) Triticum aestivum chromosome 5DL c... 53 2e-05
AP003277_20(AP003277|pid:none) Oryza sativa Japonica Group genom... 53 2e-05
AY529486_1(AY529486|pid:none) Takifugu rubripes ZIP zinc uptake ... 52 3e-05
DQ146930_1(DQ146930|pid:none) Gibberella moniliformis zinc trans... 52 3e-05
BT051764_1(BT051764|pid:none) Medicago truncatula clone MTYF5_F6... 52 4e-05
AM457428_2(AM457428|pid:none) Vitis vinifera contig VV78X129692.... 51 5e-05
AE014297_2055(AE014297|pid:none) Drosophila melanogaster chromos... 50 9e-05
CP000937_1735(CP000937|pid:none) Francisella philomiragia subsp.... 50 9e-05
AE017354_1996(AE017354|pid:none) Legionella pneumophila subsp. p... 50 9e-05
CP001323_532(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 50 1e-04
CR628336_2022(CR628336|pid:none) Legionella pneumophila str. Par... 50 2e-04
AF033536_1(AF033536|pid:none) Arabidopsis thaliana putative zinc... 50 2e-04
CU928178_82(CU928178|pid:none) Zygosaccharomyces rouxii strain C... 50 2e-04
(Q9LTH9) RecName: Full=Zinc transporter 2; AltName: Full=ZRT/IRT... 50 2e-04
AP009510_701(AP009510|pid:none) Uncultured Termite group 1 bacte... 50 2e-04
CP000675_2152(CP000675|pid:none) Legionella pneumophila str. Cor... 50 2e-04
EF084270_1(EF084270|pid:none) Picea sitchensis clone WS0274_B06 ... 49 2e-04
DQ490133_1(DQ490133|pid:none) Triticum aestivum putative zinc tr... 49 2e-04
CP000926_1405(CP000926|pid:none) Pseudomonas putida GB-1, comple... 49 3e-04
CP000498_498(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 49 3e-04
CP000498_674(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 49 3e-04
AC117072_46(AC117072|pid:none) Dictyostelium discoideum chromoso... 49 3e-04
CP000439_856(CP000439|pid:none) Francisella tularensis subsp. no... 48 5e-04
AJ538345_1(AJ538345|pid:none) Thlaspi caerulescens partial mRNA ... 48 5e-04
CT573326_1403(CT573326|pid:none) Pseudomonas entomophila str. L4... 48 5e-04
AJ538344_1(AJ538344|pid:none) Thlaspi caerulescens partial mRNA ... 48 5e-04
CP000949_1444(CP000949|pid:none) Pseudomonas putida W619, comple... 48 6e-04
CU633895_144(CU633895|pid:none) Podospora anserina genomic DNA c... 47 8e-04
AE017347_193(AE017347|pid:none) Cryptococcus neoformans var. neo... 47 8e-04
CP000094_2785(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 47 0.001
AY960754_1(AY960754|pid:none) Arabidopsis halleri subsp. gemmife... 47 0.001
AM920433_460(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 47 0.001
CP000304_2462(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 46 0.002
CP000058_1743(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 46 0.002
CP000075_1861(CP000075|pid:none) Pseudomonas syringae pv. syring... 46 0.002
AE017344_30(AE017344|pid:none) Cryptococcus neoformans var. neof... 46 0.002
AE015929_74(AE015929|pid:none) Staphylococcus epidermidis ATCC 1... 46 0.002
CP001393_1009(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 46 0.002
AC116984_130(AC116984|pid:none) Dictyostelium discoideum chromos... 45 0.003
AC140035_3(AC140035|pid:none) Medicago truncatula clone mth2-25n... 45 0.004
AE009441_2570(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 45 0.005
CP001291_2452(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 45 0.005
CU928176_759(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 45 0.005
(Q08E40) RecName: Full=Zinc transporter ZIP12; AltName: Full=Zrt... 44 0.007
AE016828_1305(AE016828|pid:none) Coxiella burnetii RSA 493, comp... 44 0.009
CP000076_4650(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 44 0.009
FN392322_539(FN392322|pid:none) Pichia pastoris GS115 chromosome... 44 0.009
AM269954_34(AM269954|pid:none) Aspergillus niger contig An01c007... 44 0.009
CU633873_39(CU633873|pid:none) Podospora anserina genomic DNA ch... 44 0.009
AB383730_1(AB383730|pid:none) Synthetic construct DNA, clone: pF... 44 0.009
AK295807_1(AK295807|pid:none) Homo sapiens cDNA FLJ52300 complet... 44 0.009
(Q15043) RecName: Full=Zinc transporter ZIP14; AltName: Full=Zrt... 44 0.009
CP000733_448(CP000733|pid:none) Coxiella burnetii Dugway 5J108-1... 44 0.009
CP000769_3870(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 44 0.009
AM270290_77(AM270290|pid:none) Aspergillus niger contig An12c034... 44 0.011
CP000462_1662(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 44 0.011
AB242563_1(AB242563|pid:none) Chengiopanax sciadophylloides CsZI... 44 0.011
CR859101_1(CR859101|pid:none) Pongo abelii mRNA; cDNA DKFZp459H0... 44 0.011
(Q5RAB7) RecName: Full=Zinc transporter ZIP14; AltName: Full=Zrt... 44 0.011
CP001141_164(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1... 43 0.015
CP001056_2879(CP001056|pid:none) Clostridium botulinum B str. Ek... 43 0.015
AM454757_1(AM454757|pid:none) Vitis vinifera contig VV78X062613.... 43 0.019
AP005528_4(AP005528|pid:none) Oryza sativa Japonica Group genomi... 43 0.019
AP007157_481(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 43 0.019
BX640417_164(BX640417|pid:none) Bordetella pertussis strain Toha... 43 0.019
AM434946_1(AM434946|pid:none) Vitis vinifera contig VV78X172666.... 42 0.025
CP001078_2624(CP001078|pid:none) Clostridium botulinum E3 str. A... 42 0.025
CP001157_2835(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 42 0.025
BX640427_48(BX640427|pid:none) Bordetella parapertussis strain 1... 42 0.025
AP008971_511(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 42 0.025
FJ208992_1(FJ208992|pid:none) Hordeum vulgare cultivar Vanessa m... 42 0.025
AM293352_1(AM293352|pid:none) Thlaspi caerulescens irt1t-G gene ... 42 0.025
AC183409_32(AC183409|pid:none) Asparagus officinalis clone B1-K2... 42 0.025
CP000828_1379(CP000828|pid:none) Acaryochloris marina MBIC11017,... 42 0.032
CU928165_322(CU928165|pid:none) Kluyveromyces thermotolerans str... 42 0.032
AP007151_814(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 42 0.032
(B7V6V8) RecName: Full=UPF0059 membrane protein PLES_21541; &FM... 42 0.032
AM454201_1(AM454201|pid:none) Vitis vinifera contig VV79X002445.... 42 0.032
AE017340_795(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 42 0.042
AP008230_1537(AP008230|pid:none) Desulfitobacterium hafniense Y5... 42 0.042
AP007151_23(AP007151|pid:none) Aspergillus oryzae RIB40 genomic ... 42 0.042
AM502251_302(AM502251|pid:none) Leishmania infantum chromosome 33. 41 0.055
CR543861_3269(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 41 0.055
AY611772_1(AY611772|pid:none) Aspergillus fumigatus membrane zin... 41 0.055
CP000853_2540(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 41 0.055
AL360231_2(AL360231|pid:none) Human DNA sequence from clone RP11... 41 0.072
BC035118_1(BC035118|pid:none) Homo sapiens solute carrier family... 41 0.072
AK295294_1(AK295294|pid:none) Homo sapiens cDNA FLJ50768 complet... 41 0.072
AM465944_1(AM465944|pid:none) Vitis vinifera contig VV78X268143.... 41 0.072
AK303735_1(AK303735|pid:none) Homo sapiens cDNA FLJ53949 complet... 41 0.072
BC094700_1(BC094700|pid:none) Homo sapiens solute carrier family... 41 0.072
BC021530_1(BC021530|pid:none) Mus musculus solute carrier family... 40 0.094
CR382137_1120(CR382137|pid:none) Debaryomyces hansenii chromosom... 40 0.094
AK122197_1(AK122197|pid:none) Mus musculus premature mRNA for mK... 40 0.094
(Q75N73) RecName: Full=Zinc transporter ZIP14; AltName: Full=Zrt... 40 0.094
AP009493_5640(AP009493|pid:none) Streptomyces griseus subsp. gri... 40 0.094
EU958153_1(EU958153|pid:none) Zea mays clone 1675523 ZIP zinc/ir... 40 0.094
CR940352_734(CR940352|pid:none) Theileria annulata strain Ankara... 40 0.094
AM269971_36(AM269971|pid:none) Aspergillus niger contig An01c024... 40 0.12
CP000251_3780(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 40 0.12
CP001080_762(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 40 0.12
EF082907_1(EF082907|pid:none) Picea sitchensis clone WS0297_A09 ... 40 0.12
EF082241_1(EF082241|pid:none) Picea sitchensis clone WS02711_M07... 40 0.12
AL032648_5(AL032648|pid:none) Caenorhabditis elegans YAC Y54G9A,... 40 0.16
T23089(T23089)hypothetical protein H13N06.5 - Caenorhabditis ele... 40 0.16
CP000724_4100(CP000724|pid:none) Alkaliphilus metalliredigens QY... 40 0.16
CP001034_560(CP001034|pid:none) Natranaerobius thermophilus JW/N... 40 0.16
(A5D7L5) RecName: Full=Zinc transporter ZIP14; AltName: Full=Zrt... 40 0.16
(Q9XTQ7) RecName: Full=Putative Ke4-like protein tag-148; &Z999... 40 0.16
AK014895_1(AK014895|pid:none) Mus musculus adult male testis cDN... 39 0.21
CP000884_2960(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 39 0.21
AM920437_1012(AM920437|pid:none) Penicillium chrysogenum Wiscons... 39 0.21
AY590764_1(AY590764|pid:none) Cucumis sativus iron regulated tra... 39 0.21
CP000724_3781(CP000724|pid:none) Alkaliphilus metalliredigens QY... 39 0.21
AP008955_4025(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 39 0.21
AK122483_1(AK122483|pid:none) Mus musculus mRNA for mKIAA1265 pr... 39 0.27
(Q6P5F6) RecName: Full=Zinc transporter ZIP10; AltName: Full=Zrt... 39 0.27
CR857971_1(CR857971|pid:none) Pongo abelii mRNA; cDNA DKFZp469F0... 39 0.27
(Q91W10) RecName: Full=Zinc transporter ZIP8; AltName: Full=Zrt-... 39 0.27
(Q9C0K1) RecName: Full=Zinc transporter ZIP8; AltName: Full=Zrt-... 39 0.27
AM910988_65(AM910988|pid:none) Plasmodium knowlesi strain H chro... 39 0.27
BC073909_1(BC073909|pid:none) Homo sapiens solute carrier family... 39 0.36
(Q5FVQ0) RecName: Full=Zinc transporter ZIP8; AltName: Full=Zrt-... 39 0.36
AB033091_1(AB033091|pid:none) Homo sapiens mRNA for KIAA1265 pro... 39 0.36
(Q9ULF5) RecName: Full=Zinc transporter ZIP10; AltName: Full=Zrt... 39 0.36
AB126260_1(AB126260|pid:none) Danio rerio LIV1 mRNA for zinc tra... 39 0.36
AM902716_4101(AM902716|pid:none) Bordetella petrii strain DSM 12... 39 0.36
CR749813_1(CR749813|pid:none) Homo sapiens mRNA; cDNA DKFZp781L1... 39 0.36
AM180355_3572(AM180355|pid:none) Clostridium difficile 630 compl... 39 0.36
CP001140_73(CP001140|pid:none) Desulfurococcus kamchatkensis 122... 38 0.47
CP000831_22(CP000831|pid:none) Dinoroseobacter shibae DFL 12 pla... 38 0.47
CP001055_437(CP001055|pid:none) Elusimicrobium minutum Pei191, c... 38 0.47
BC098274_1(BC098274|pid:none) Homo sapiens solute carrier family... 38 0.47
AL844505_90(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 38 0.61
AM494968_348(AM494968|pid:none) Leishmania braziliensis chromoso... 37 0.80
AM494968_345(AM494968|pid:none) Leishmania braziliensis chromoso... 37 0.80
CR940352_490(CR940352|pid:none) Theileria annulata strain Ankara... 37 0.80
CR860294_1(CR860294|pid:none) Pongo abelii mRNA; cDNA DKFZp459C1... 37 0.80
CR382134_317(CR382134|pid:none) Debaryomyces hansenii strain CBS... 37 0.80
BC055012_1(BC055012|pid:none) Mus musculus solute carrier family... 37 1.0
G02273(G02273)LIV-1 protein - human 37 1.0
BC008317_1(BC008317|pid:none) Homo sapiens solute carrier family... 37 1.0
(Q4V887) RecName: Full=Zinc transporter ZIP6; AltName: Full=Zrt-... 37 1.0
CP000138_393(CP000138|pid:none) Rhizobium etli CFN 42 plasmid p4... 37 1.0
AK304079_1(AK304079|pid:none) Homo sapiens cDNA FLJ54436 complet... 37 1.0
(Q8C145) RecName: Full=Zinc transporter ZIP6; AltName: Full=Zrt-... 37 1.0
AK299102_1(AK299102|pid:none) Homo sapiens cDNA FLJ56139 complet... 37 1.0
CQ834560_1(CQ834560|pid:none) Sequence 431 from Patent WO2004058... 37 1.0
BT077673_1(BT077673|pid:none) Lepeophtheirus salmonis clone lsal... 37 1.4
AM270382_35(AM270382|pid:none) Aspergillus niger contig An16c030... 37 1.4
AE017282_2291(AE017282|pid:none) Methylococcus capsulatus str. B... 37 1.4
CP000853_645(CP000853|pid:none) Alkaliphilus oremlandii OhILAs, ... 37 1.4
AL844558_1(AL844558|pid:none) Mouse DNA sequence from clone RP23... 37 1.4
CP001100_2375(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 37 1.4
(Q5FWH7) RecName: Full=Zinc transporter ZIP12; AltName: Full=Zrt... 37 1.4
AM902716_3136(AM902716|pid:none) Bordetella petrii strain DSM 12... 36 1.8
CP000660_999(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351... 36 1.8
BX571661_256(BX571661|pid:none) Wolinella succinogenes, complete... 36 1.8
AE014296_2600(AE014296|pid:none) Drosophila melanogaster chromos... 36 1.8
CR382126_770(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 36 1.8
AE014296_2601(AE014296|pid:none) Drosophila melanogaster chromos... 36 1.8
AM167904_2384(AM167904|pid:none) Bordetella avium 197N complete ... 36 1.8
CP001097_1113(CP001097|pid:none) Chlorobium limicola DSM 245, co... 36 1.8
AM920427_299(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 36 1.8
CT005270_10(CT005270|pid:none) Leishmania major strain Friedlin,... 36 2.3
AP008957_1070(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 36 2.3
BC015770_1(BC015770|pid:none) Homo sapiens solute carrier family... 36 2.3
AM494970_10(AM494970|pid:none) Leishmania braziliensis chromosom... 36 2.3
AM039952_2426(AM039952|pid:none) Xanthomonas campestris pv. vesi... 35 3.0
CR382130_30(CR382130|pid:none) Yarrowia lipolytica strain CLIB12... 35 3.0
FJ208991_1(FJ208991|pid:none) Hordeum vulgare cultivar Vanessa m... 35 3.0
CP000724_319(CP000724|pid:none) Alkaliphilus metalliredigens QYM... 35 3.0
CP001108_1279(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 35 3.0
CP000930_1490(CP000930|pid:none) Heliobacterium modesticaldum Ic... 35 4.0
AE017354_1701(AE017354|pid:none) Legionella pneumophila subsp. p... 35 4.0
AP008955_868(AP008955|pid:none) Brevibacillus brevis NBRC 100599... 35 4.0
CP000539_3181(CP000539|pid:none) Acidovorax sp. JS42, complete g... 35 4.0
AJ812001_1(AJ812001|pid:none) Aspergillus niger partial mRNA for... 35 4.0
CR382124_682(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 35 4.0
AB126942_1(AB126942|pid:none) Homo sapiens mRNA for hypothetical... 35 4.0
CP001616_770(CP001616|pid:none) Tolumonas auensis DSM 9187, comp... 35 5.2
(A1KRK6) RecName: Full=Zinc transporter zupT; &(Q9JX23) RecName... 35 5.2
CP001392_2613(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 35 5.2
AY081215_1(AY081215|pid:none) Daucus carota symbiosis-related zi... 35 5.2
(Q9K1H6) RecName: Full=Zinc transporter zupT; &AE002098_166(AE0... 35 5.2
(Q06916) RecName: Full=Protein gufA; &S39876(S39876;S33148;S357... 35 5.2
CP000381_1878(CP000381|pid:none) Neisseria meningitidis 053442, ... 35 5.2
AK007473_1(AK007473|pid:none) Mus musculus 10 day old male pancr... 35 5.2
AE017347_192(AE017347|pid:none) Cryptococcus neoformans var. neo... 34 6.7
AM502251_10(AM502251|pid:none) Leishmania infantum chromosome 33. 34 6.7
AE010299_385(AE010299|pid:none) Methanosarcina acetivorans str. ... 34 6.7
T25420(T25420)hypothetical protein T28F3.3 - Caenorhabditis eleg... 34 6.7
CP000512_2617(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 34 6.7
CP000246_694(CP000246|pid:none) Clostridium perfringens ATCC 131... 34 6.7
AP007164_705(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 34 6.7
(Q8PKQ5) RecName: Full=Zinc transporter zupT; &AE008923_2075(AE... 34 6.7
(Q8XMG8) RecName: Full=Zinc transporter zupT; &BA000016_721(BA0... 34 6.7
BT080862_1(BT080862|pid:none) Caligus clemensi clone ccle-evs-50... 34 6.7
(Q9XUC4) RecName: Full=Putative protein tag-230; &Z82285_3(Z822... 34 6.7
AB172316_1(AB172316|pid:none) Macaca fascicularis brain cDNA clo... 34 8.8
BC039498_1(BC039498|pid:none) Homo sapiens solute carrier family... 34 8.8
BA000045_4280(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 34 8.8
AE008691_131(AE008691|pid:none) Thermoanaerobacter tengcongensis... 34 8.8

>BC089142_1(BC089142|pid:none) Xenopus laevis hypothetical protein
MGC85180, mRNA (cDNA clone MGC:85180 IMAGE:6870931),
complete cds.
Length = 307

Score = 75.1 bits (183), Expect = 3e-12
Identities = 36/128 (28%), Positives = 74/128 (57%)
Frame = +3

Query: 558 SKSKAWVFLVALSLHSIFDGLGLGSETQKDSFYGLLIAVLAXKFLDGLVLGIAIKYAYFS 737
S +++V +++LSLHSIF+G+ +G + + + +A+L K + + L + + +
Sbjct: 161 SSFRSFVLIISLSLHSIFEGIAIGLQNVQSEVLQIAVAILVHKSIIAVSLSLLLLQSSVQ 220

Query: 738 FKFSCIALVFAAAMTPLGIGIGMAISXAYESSTDAYLVKGIILSITCGSFIYISXIELLP 917
++ +++V A M+PLGIGIG+ + S + +V+ ++ + G+F+YI+ +E+LP
Sbjct: 221 TRWFVLSIVMFALMSPLGIGIGIGV---MHKSDENRMVQCVLEGLAAGTFVYITFLEILP 277

Query: 918 SGLCQKGW 941
L W
Sbjct: 278 HELNSNKW 285

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,245,818,078
Number of extensions: 23133364
Number of successful extensions: 49311
Number of sequences better than 10.0: 292
Number of HSP's gapped: 49032
Number of HSP's successfully gapped: 337
Length of query: 330
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 201
Effective length of database: 627,614,014
Effective search space: 126150416814
Effective search space used: 126150416814
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.93 gvh: 0.49 alm: 0.25 top: 0.40 tms: 0.33 mit: 0.20 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: plasma membrane
28.0 %: endoplasmic reticulum
16.0 %: mitochondrial
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear
4.0 %: vesicles of secretory system

>> prediction for Contig-U08405-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0