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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08391-1
Contig ID Contig-U08391-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08391-1 (Contig-U08391-1Q) /CSM_Contig/Contig-U08391-1Q.Seq.d
GTATGGCCATCACCACCACCTGGAGTATGAACATCGTGAAGTGAGATATT
GTCATTTGAAGATGATAAATGTTTTTTAGCCTCTTTGTTAGTTAAGTATT
GGAGAACTACGAAATCAATGAATTGCATAACGATACCAGCAAGAAGGGCA
AAGAGGTATGGATAGGCTTCGTAACCCTCATGCCATGATTCTGGTAAACA
TTCCGATGTGAGAGAAATGACGGCTGGTAGTAACATGTGAATGAAAGCAC
ATGACAATACAACACCAATACCGATGGATTTACCAACGATGATTGCATAT
CTTGGAATTCTTAATTGTTTTATATGGGTTGCTAAAATTGGTATCATCGT
ACCAAGAAAGCTTACACCAAGAATAATGAAAACTGCTGCTATATGAATTG
GTTTGGAATATTGTTTATCTGGATCTTCTTCACACGTAACACCAGCATGA
ATATGTCCTTCATGACCACCCCCCTCCTCTTCACTATGGTCATGATCTGT
ATAATATAATTTAAATAAATTGTTAAATGCTGTTTGGCATAATTCTACTG
TTAAAAATGTTGGTGGTGTCAATGTTGACATTTTGTATTTATTTTTTATT
TTTTTATTTTTTTTTTATTTGTTTTTATTTGTTTTTATTTTATAA
Gap no gap
Contig length 645
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 806075
End point 805428
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 2
Link to clone list U08391
List of clone(s) 

est1=SSA645F,1,646
est2=FC-IC1359E,352,647
Translated Amino Acid sequence 
maitttwsmnivk*divi*r**mffslfvs*vlenyeinelhndtskkgkevwigfvtlm
p*fw*tfrcerndgw**hvnest*qyntntdgftnddciswns*lfymgc*NWYHRTKKA
YTKNNENCCYMNWFGILFIWIFFTRNTSMNMSFMTTPLLFTMVMICII*fk*ivkccla*
fyc*kcwwcqc*hfvfifyffifflfvficfyfi
Translated Amino Acid sequence (All Frames) 
Frame A:
vwpspppgv*ts*seilsfeddkcflasllvkywrttksmncitiparrakryg*as*ps
chdsgkhsdvremtagsnm*mkahdnttpipmdlptmiaylgilncfiwvakigiivprk
ltprimktaai*igleyclsgssshvtpa*icps*pppssslws*sv*ynlnkllnavwh
nstvknvggvnvdilylffiflfffylflfvfil*


Frame B:
yghhhhleyehrevrychlkminvf*plc*lsigelrnq*ia*ryqqegqrgmdrlrnph
amilvnipm*ek*rlvvtce*khmtiqhqyrwiyqr*lhileflivlygllklvssyqes
lhqe**klllyelvwnivyldllht*hqheyvlhdhppplhyghdlynii*inc*mlfgi
illlkmlvvsmltfciyflffyffficfylflfy


Frame C:
maitttwsmnivk*divi*r**mffslfvs*vlenyeinelhndtskkgkevwigfvtlm
p*fw*tfrcerndgw**hvnest*qyntntdgftnddciswns*lfymgc*NWYHRTKKA
YTKNNENCCYMNWFGILFIWIFFTRNTSMNMSFMTTPLLFTMVMICII*fk*ivkccla*
fyc*kcwwcqc*hfvfifyffifflfvficfyfi
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08391-1 (Contig-U08391-1Q)
/CSM_Contig/Contig-U08391-1Q.Seq.d
         (645 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08391-1 (Contig-U08391-1Q) /CSM_Contig/Conti...  1148  0.0
Contig-U04520-1 (Contig-U04520-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11808-1 (Contig-U11808-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U02897-1 (Contig-U02897-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U12161-1 (Contig-U12161-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U11136-1 (Contig-U11136-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U03539-1 (Contig-U03539-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U02182-1 (Contig-U02182-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U14787-1 (Contig-U14787-1Q) /CSM_Contig/Conti...    32  0.70
Contig-U14691-1 (Contig-U14691-1Q) /CSM_Contig/Conti...    32  0.70

>Contig-U08391-1 (Contig-U08391-1Q) /CSM_Contig/Contig-U08391-1Q.Seq.d
          Length = 645

 Score = 1148 bits (579), Expect = 0.0
 Identities = 579/579 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatggccatcaccaccacctggagtatgaacatcgtgaagtgagatattgtcatttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtatggccatcaccaccacctggagtatgaacatcgtgaagtgagatattgtcatttgaa 60

                                                                       
Query: 61  gatgataaatgttttttagcctctttgttagttaagtattggagaactacgaaatcaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gatgataaatgttttttagcctctttgttagttaagtattggagaactacgaaatcaatg 120

                                                                       
Query: 121 aattgcataacgataccagcaagaagggcaaagaggtatggataggcttcgtaaccctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattgcataacgataccagcaagaagggcaaagaggtatggataggcttcgtaaccctca 180

                                                                       
Query: 181 tgccatgattctggtaaacattccgatgtgagagaaatgacggctggtagtaacatgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgccatgattctggtaaacattccgatgtgagagaaatgacggctggtagtaacatgtga 240

                                                                       
Query: 241 atgaaagcacatgacaatacaacaccaataccgatggatttaccaacgatgattgcatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgaaagcacatgacaatacaacaccaataccgatggatttaccaacgatgattgcatat 300

                                                                       
Query: 301 cttggaattcttaattgttttatatgggttgctaaaattggtatcatcgtaccaagaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttggaattcttaattgttttatatgggttgctaaaattggtatcatcgtaccaagaaag 360

                                                                       
Query: 361 cttacaccaagaataatgaaaactgctgctatatgaattggtttggaatattgtttatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttacaccaagaataatgaaaactgctgctatatgaattggtttggaatattgtttatct 420

                                                                       
Query: 421 ggatcttcttcacacgtaacaccagcatgaatatgtccttcatgaccacccccctcctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggatcttcttcacacgtaacaccagcatgaatatgtccttcatgaccacccccctcctct 480

                                                                       
Query: 481 tcactatggtcatgatctgtataatataatttaaataaattgttaaatgctgtttggcat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcactatggtcatgatctgtataatataatttaaataaattgttaaatgctgtttggcat 540

                                                  
Query: 541 aattctactgttaaaaatgttggtggtgtcaatgttgac 579
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aattctactgttaaaaatgttggtggtgtcaatgttgac 579


>Contig-U04520-1 (Contig-U04520-1Q) /CSM_Contig/Contig-U04520-1Q.Seq.d
          Length = 771

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                         
Query: 500 tataatataatttaaataaat-tgttaaat 528
           ||||||||||||||||||||| ||||||||
Sbjct: 210 tataatataatttaaataaatatgttaaat 239


>Contig-U11808-1 (Contig-U11808-1Q) /CSM_Contig/Contig-U11808-1Q.Seq.d
          Length = 1209

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 500 tataatataatttaaataaat 520
           |||||||||||||||||||||
Sbjct: 28  tataatataatttaaataaat 8


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6672
Number of Sequences: 6905
Number of extensions: 6672
Number of successful extensions: 813
Number of sequences better than 10.0: 81
length of query: 645
length of database: 5,674,871
effective HSP length: 16
effective length of query: 629
effective length of database: 5,564,391
effective search space: 3500001939
effective search space used: 3500001939
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA 
Query= Contig-U08391-1 (Contig-U08391-1Q) /CSM_Contig/Contig-U08391-1Q.Seq.d
         (645 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...  1148   0.0    1
(AU076361) Dictyostelium discoideum slug cDNA, clone SSA645.     1148   0.0    1
(AU272437) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   454   e-123  1
(AU272438) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   424   e-114  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   100   1e-39  6
(BZ117132) CH230-422M4.TV CHORI-230 Segment 2 Rattus norvegi...    52   0.025  1
(AC188157) Canis familiaris chromosome 14 clone XX-191C4 map...    36   0.82   4
(AC090831) Homo sapiens chromosome 11 clone CTD-2337N9 map 1...    42   0.94   4
(AL592161) Human DNA sequence from clone RP11-342H21 on chro...    46   1.5    1
(AC126846) Rattus norvegicus clone CH230-11M7, *** SEQUENCIN...    46   1.5    1
(EJ561992) 1092959666403 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.5    1
(EB644620) AGENCOURT_75548151 NICHD_XGC_thy Xenopus laevis c...    46   1.5    1
(AC180126) Strongylocentrotus purpuratus clone R3-4005M24, W...    40   2.4    5
(AC145446) Felis catus clone RP86-101B9, WORKING DRAFT SEQUE...    34   3.0    2
(AC130795) Felis catus clone RP86-525B20, WORKING DRAFT SEQU...    34   3.0    2
(EK516264) 1095515500281 Global-Ocean-Sampling_GS-32-01-01-1...    32   4.0    2
(EK499772) 1095505205631 Global-Ocean-Sampling_GS-32-01-01-1...    32   4.0    2
(AC132274) Mus musculus BAC clone RP24-341I21 from chromosom...    44   6.1    1
(AC171262) Pan troglodytes chromosome X clone RP43-43O10 map...    44   6.1    1
(Z82209) Human DNA sequence from clone RP3-428A13 on chromos...    44   6.1    1
(AC092268) Homo sapiens chromosome X clone RP11-185O17 map p...    44   6.1    1
(AL589785) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.1    1
(AC191636) Zea mays chromosome 3 clone ZMMBBb-94L22; ZMMBBb0...    44   6.1    1
(AC190872) Zea mays chromosome 2 clone ZMMBBb-109B1; ZMMBBb0...    44   6.1    1
(AC185110) Zea mays chromosome 3 clone CH201-528E5; ZMMBBc05...    44   6.1    1
(AC166851) Bos taurus clone CH240-180A12, WORKING DRAFT SEQU...    44   6.1    1
(AC164201) Bos taurus clone CH240-140P10, *** SEQUENCING IN ...    44   6.1    1
(AQ899052) HS_3203_B2_G10_T7C CIT Approved Human Genomic Spe...    44   6.1    1
(AQ183875) HS_3203_B2_G10_T7 CIT Approved Human Genomic Sper...    44   6.1    1
(EJ473738) 1095403429016 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.1    1
(CZ822112) OC__Ba0200O18.f OC__Ba Oryza coarctata genomic cl...    44   6.1    1
(CZ710306) OC__Ba0031J10.f OC__Ba Oryza coarctata genomic cl...    44   6.1    1
(CG098396) PUIEO84TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.1    1
(CG079205) PUJCX35TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.1    1
(CE496546) tigr-gss-dog-17000310302371 Dog Library Canis lup...    44   6.1    1
(CC949579) BOIFD90TF BO_1.4_1.6_KB_nuc Brassica oleracea gen...    44   6.1    1
(BZ703380) PUCEG90TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.1    1
(BZ670167) PUBJA95TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.1    1
(DT169843) JGI_ANNO41684.rev ANNO Pimephales promelas Whole ...    44   6.1    1
(DT112769) JGI_ANNO2202.rev ANNO Pimephales promelas Whole (...    44   6.1    1
(AM091000) Lutzomyia longipalpis EST clone NSFM-104d10, sequ...    44   6.1    1
(CN582415) USDA-FP_125478 Acyrthosiphon pisum, Pea Aphid Acy...    44   6.1    1
(BM952286) rc57d12.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    44   6.1    1
(BM358964) GA__Ea0014N09r Gossypium arboreum 7-10 dpa fiber ...    44   6.1    1
(FF293716) 279295247 Pea aphid whole body normalized full le...    44   6.1    1
(EX652906) 256777648 Pea aphid whole body normalized full le...    44   6.1    1
(EX632361) 256563820 Pea aphid whole body normalized full le...    44   6.1    1
(EX630629) 255477584 Pea aphid whole body normalized full le...    44   6.1    1
(EX622446) 255418995 Pea aphid whole body normalized full le...    44   6.1    1
(EX602811) 255335573 Pea aphid whole body normalized full le...    44   6.1    1
(CU424460) Zebrafish DNA sequence from clone CH211-142I7 in ...    38   7.2    2
(AL391359) Human DNA sequence *** SEQUENCING CANCELLED *** f...    42   7.6    2
(CR932038) Zebrafish DNA sequence from clone DKEY-232K16 in ...    36   7.8    6

>(AC117072) Dictyostelium discoideum chromosome 2 map 3879572-4071762
              strain AX4, complete sequence.
          Length = 192187

 Score = 1148 bits (579), Expect = 0.0
 Identities = 579/579 (100%)
 Strand = Plus / Minus


Query: 1      gtatggccatcaccaccacctggagtatgaacatcgtgaagtgagatattgtcatttgaa 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117867 gtatggccatcaccaccacctggagtatgaacatcgtgaagtgagatattgtcatttgaa 117808


Query: 61     gatgataaatgttttttagcctctttgttagttaagtattggagaactacgaaatcaatg 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117807 gatgataaatgttttttagcctctttgttagttaagtattggagaactacgaaatcaatg 117748


Query: 121    aattgcataacgataccagcaagaagggcaaagaggtatggataggcttcgtaaccctca 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117747 aattgcataacgataccagcaagaagggcaaagaggtatggataggcttcgtaaccctca 117688


Query: 181    tgccatgattctggtaaacattccgatgtgagagaaatgacggctggtagtaacatgtga 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117687 tgccatgattctggtaaacattccgatgtgagagaaatgacggctggtagtaacatgtga 117628


Query: 241    atgaaagcacatgacaatacaacaccaataccgatggatttaccaacgatgattgcatat 300
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117627 atgaaagcacatgacaatacaacaccaataccgatggatttaccaacgatgattgcatat 117568


Query: 301    cttggaattcttaattgttttatatgggttgctaaaattggtatcatcgtaccaagaaag 360
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117567 cttggaattcttaattgttttatatgggttgctaaaattggtatcatcgtaccaagaaag 117508


Query: 361    cttacaccaagaataatgaaaactgctgctatatgaattggtttggaatattgtttatct 420
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117507 cttacaccaagaataatgaaaactgctgctatatgaattggtttggaatattgtttatct 117448


Query: 421    ggatcttcttcacacgtaacaccagcatgaatatgtccttcatgaccacccccctcctct 480
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117447 ggatcttcttcacacgtaacaccagcatgaatatgtccttcatgaccacccccctcctct 117388


Query: 481    tcactatggtcatgatctgtataatataatttaaataaattgttaaatgctgtttggcat 540
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117387 tcactatggtcatgatctgtataatataatttaaataaattgttaaatgctgtttggcat 117328


Query: 541    aattctactgttaaaaatgttggtggtgtcaatgttgac 579
              |||||||||||||||||||||||||||||||||||||||
Sbjct: 117327 aattctactgttaaaaatgttggtggtgtcaatgttgac 117289

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 648,812,669
Number of extensions: 38204115
Number of successful extensions: 3148637
Number of sequences better than 10.0: 53
Length of query: 645
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 622
Effective length of database: 93,106,754,628
Effective search space: 57912401378616
Effective search space used: 57912401378616
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08391-1 (Contig-U08391-1Q) /CSM_Contig/Contig-U08391-1Q.Seq.d
         (645 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117072_46(AC117072|pid:none) Dictyostelium discoideum chromoso...   332   7e-90
AC116984_130(AC116984|pid:none) Dictyostelium discoideum chromos...   235   7e-61
AM502246_199(AM502246|pid:none) Leishmania infantum chromosome 28.     80   5e-14
AM502251_302(AM502251|pid:none) Leishmania infantum chromosome 33.     76   9e-13
AM270382_35(AM270382|pid:none) Aspergillus niger contig An16c030...    70   7e-11
AM920437_1012(AM920437|pid:none) Penicillium chrysogenum Wiscons...    69   9e-11
CR380959_186(CR380959|pid:none) Candida glabrata strain CBS138 c...    64   5e-09
CR382124_682(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    64   5e-09
FN392322_539(FN392322|pid:none) Pichia pastoris GS115 chromosome...    63   8e-09
CU633873_39(CU633873|pid:none) Podospora anserina genomic DNA ch...    62   1e-08
CU633895_144(CU633895|pid:none) Podospora anserina genomic DNA c...    59   9e-08
(Q12436) RecName: Full=Zinc-regulated transporter 2; AltName: Fu...    58   3e-07
CP000498_674(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    57   5e-07
DQ146930_1(DQ146930|pid:none) Gibberella moniliformis zinc trans...    57   6e-07
CR382134_317(CR382134|pid:none) Debaryomyces hansenii strain CBS...    54   3e-06
AM455752_3(AM455752|pid:none) Vitis vinifera contig VV78X246665....    54   3e-06
CR382137_1120(CR382137|pid:none) Debaryomyces hansenii chromosom...    54   5e-06
AM502249_381(AM502249|pid:none) Leishmania infantum chromosome 31.     54   5e-06
AM502249_380(AM502249|pid:none) Leishmania infantum chromosome 31.     54   5e-06
AM269971_36(AM269971|pid:none) Aspergillus niger contig An01c024...    52   1e-05
AE016820_228(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    52   2e-05
AE017347_192(AE017347|pid:none) Cryptococcus neoformans var. neo...    51   2e-05
AM494968_348(AM494968|pid:none) Leishmania braziliensis chromoso...    51   3e-05
AB242563_1(AB242563|pid:none) Chengiopanax sciadophylloides CsZI...    50   4e-05
AY611772_1(AY611772|pid:none) Aspergillus fumigatus membrane zin...    50   4e-05
CP000498_498(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    50   7e-05
AB175740_1(AB175740|pid:none) Thlaspi japonicum TjZNT2 mRNA for ...    49   9e-05
AE017344_30(AE017344|pid:none) Cryptococcus neoformans var. neof...    49   9e-05
CR380951_49(CR380951|pid:none) Candida glabrata strain CBS138 ch...    49   1e-04
AC133572_20(AC133572|pid:none) Medicago truncatula clone mth2-10...    49   1e-04
CR382132_644(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    49   2e-04
AP007151_814(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    48   2e-04
AB206397_1(AB206397|pid:none) Thlaspi japonicum TjZNT1 mRNA for ...    48   3e-04
CU928170_382(CU928170|pid:none) Kluyveromyces thermotolerans str...    48   3e-04
CR382132_906(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    48   3e-04
AY456088_1(AY456088|pid:none) Thlaspi caerulescens Zn and Cd tra...    48   3e-04
AF275751_1(AF275751|pid:none) Thlaspi caerulescens ZIP-like zinc...    47   5e-04
AM448776_2(AM448776|pid:none) Vitis vinifera contig VV78X278502....    47   5e-04
AY805423_1(AY805423|pid:none) Fragaria x ananassa zinc transport...    47   5e-04
AM466959_1(AM466959|pid:none) Vitis vinifera contig VV78X079628....    46   8e-04
FJ208992_1(FJ208992|pid:none) Hordeum vulgare cultivar Vanessa m...    46   8e-04
AM920430_132(AM920430|pid:none) Penicillium chrysogenum Wisconsi...    46   0.001
AM920427_299(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    46   0.001
AF133267_1(AF133267|pid:none) Thlaspi caerulescens Zn and Cd tra...    45   0.001
EU958153_1(EU958153|pid:none) Zea mays clone 1675523 ZIP zinc/ir...    45   0.002
AM457428_2(AM457428|pid:none) Vitis vinifera contig VV78X129692....    44   0.003
(Q8LE59) RecName: Full=Fe(2+) transport protein 3, chloroplastic...    44   0.003
AY456089_1(AY456089|pid:none) Thlaspi caerulescens Zn and Cd tra...    44   0.004
AF136579_1(AF136579|pid:none) Lycopersicon esculentum iron-regul...    44   0.004
AY085604_1(AY085604|pid:none) Arabidopsis thaliana clone 15980 m...    44   0.004
FN392321_531(FN392321|pid:none) Pichia pastoris GS115 chromosome...    44   0.005
AY590764_1(AY590764|pid:none) Cucumis sativus iron regulated tra...    43   0.009
CU928167_6(CU928167|pid:none) Kluyveromyces thermotolerans strai...    43   0.009
CR382134_694(CR382134|pid:none) Debaryomyces hansenii strain CBS...    43   0.009
AY327039_1(AY327039|pid:none) Oryza sativa (japonica cultivar-gr...    42   0.012
AY339056_1(AY339056|pid:none) Medicago truncatula metal transpor...    42   0.015
AC140035_3(AC140035|pid:none) Medicago truncatula clone mth2-25n...    42   0.015
AP007151_23(AP007151|pid:none) Aspergillus oryzae RIB40 genomic ...    42   0.015
BT064213_1(BT064213|pid:none) Zea mays full-length cDNA clone ZM...    42   0.020
AM269954_34(AM269954|pid:none) Aspergillus niger contig An01c007...    41   0.026
CU633438_156(CU633438|pid:none) Podospora anserina genomic DNA c...    41   0.026
AP007155_1119(AP007155|pid:none) Aspergillus oryzae RIB40 genomi...    41   0.026
BT062162_1(BT062162|pid:none) Zea mays full-length cDNA clone ZM...    41   0.026
AJ580314_1(AJ580314|pid:none) Arabidopsis halleri subsp. halleri...    41   0.034
(O23039) RecName: Full=Zinc transporter 5; AltName: Full=ZRT/IRT...    41   0.034
AM920433_460(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    41   0.034
AC153003_20(AC153003|pid:none) Medicago truncatula clone mth2-96...    40   0.044
AC153003_25(AC153003|pid:none) Medicago truncatula clone mth2-96...    40   0.044
AK221833_1(AK221833|pid:none) Arabidopsis thaliana mRNA for puta...    40   0.058
(Q8W246) RecName: Full=Zinc transporter 7; AltName: Full=ZRT/IRT...    40   0.058
AM454757_1(AM454757|pid:none) Vitis vinifera contig VV78X062613....    40   0.075
CR382130_30(CR382130|pid:none) Yarrowia lipolytica strain CLIB12...    39   0.098
CU928165_322(CU928165|pid:none) Kluyveromyces thermotolerans str...    39   0.098
FJ208991_1(FJ208991|pid:none) Hordeum vulgare cultivar Vanessa m...    39   0.098
(Q8W245) RecName: Full=Probable zinc transporter 10; AltName: Fu...    39   0.098
AE017347_193(AE017347|pid:none) Cryptococcus neoformans var. neo...    39   0.17
AB126090_1(AB126090|pid:none) Oryza sativa Japonica Group OsZIP7...    38   0.22
AP007157_481(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    38   0.29
DQ490131_1(DQ490131|pid:none) Triticum aestivum putative zinc tr...    38   0.29
AM293350_1(AM293350|pid:none) Thlaspi caerulescens irt1-G gene f...    37   0.37
AM293351_1(AM293351|pid:none) Thlaspi caerulescens irt1-P gene f...    37   0.37
BT051764_1(BT051764|pid:none) Medicago truncatula clone MTYF5_F6...    37   0.37
CU928178_82(CU928178|pid:none) Zygosaccharomyces rouxii strain C...    37   0.37
AY864924_1(AY864924|pid:none) Triticum aestivum zinc transporter...    37   0.49
AY275180_1(AY275180|pid:none) Oryza sativa (japonica cultivar-gr...    37   0.49
AC145388_15(AC145388|pid:none) Oryza sativa chromosome 3 BAC OSJ...    36   0.83
AM465944_1(AM465944|pid:none) Vitis vinifera contig VV78X268143....    36   0.83
AB263746_1(AB263746|pid:none) Nicotiana tabacum IRT1 mRNA for ir...    36   1.1
AF292029_1(AF292029|pid:none) Thlaspi caerulescens putative Zn t...    35   1.4
FN357314_17(FN357314|pid:none) Schistosoma mansoni genome sequen...    35   1.4
AM455308_1(AM455308|pid:none) Vitis vinifera contig VV78X269517....    35   1.9
AM455308_2(AM455308|pid:none) Vitis vinifera contig VV78X269517....    35   1.9
AM920428_86(AM920428|pid:none) Penicillium chrysogenum Wisconsin...    35   2.4
AM182059_1(AM182059|pid:none) Hordeum vulgare mRNA for zinc tran...    34   3.2
AK123848_1(AK123848|pid:none) Homo sapiens cDNA FLJ41854 fis, cl...    33   5.4
DQ490134_1(DQ490134|pid:none) Triticum aestivum putative zinc tr...    33   9.2
CU928176_759(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    33   9.2

>AC117072_46(AC117072|pid:none) Dictyostelium discoideum chromosome
           2 map 3879572-4071762 strain AX4, complete sequence.
          Length = 389

 Score =  332 bits (850), Expect = 7e-90
 Identities = 168/193 (87%), Positives = 168/193 (87%)
 Frame = -2

Query: 581 MSTLTPPTFLTVELCQTAFNNLFKLYYTXXXXXXXXXXXXXXHIHAGVTCEEDPDKQYSK 402
           MSTLTPPTFLTVELCQTAFNNLFKLYYT              HIHAGVTCEEDPDKQYSK
Sbjct: 1   MSTLTPPTFLTVELCQTAFNNLFKLYYTDHDHSEEEGGGHEGHIHAGVTCEEDPDKQYSK 60

Query: 401 PIHIAAVFIILGVSFLGTMIPILATHIKQLRIPRYAXXXXXXXXXXXVLSCAFIHMLLPA 222
           PIHIAAVFIILGVSFLGTMIPILATHIKQLRIPRYA           VLSCAFIHMLLPA
Sbjct: 61  PIHIAAVFIILGVSFLGTMIPILATHIKQLRIPRYAIIVGKSIGIGVVLSCAFIHMLLPA 120

Query: 221 VISLTSECLPESWHEGYEAYPYLFALLAGIVMQFIDFVVLQYLTNKEAKKHLSSSNDNIS 42
           VISLTSECLPESWHEGYEAYPYLFALLAGIVMQFIDFVVLQYLTNKEAKKHLSSSNDNIS
Sbjct: 121 VISLTSECLPESWHEGYEAYPYLFALLAGIVMQFIDFVVLQYLTNKEAKKHLSSSNDNIS 180

Query: 41  LHDVHTPGGGDGH 3
           LHDVHTPGGGDGH
Sbjct: 181 LHDVHTPGGGDGH 193

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,051,266,658
Number of extensions: 21293976
Number of successful extensions: 58256
Number of sequences better than 10.0: 97
Number of HSP's gapped: 58084
Number of HSP's successfully gapped: 97
Length of query: 215
Length of database: 1,040,966,779
Length adjustment: 123
Effective length of query: 92
Effective length of database: 646,839,724
Effective search space: 59509254608
Effective search space used: 59509254608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.45  gvh: 0.40  alm: 0.28  top: 0.47  tms: 0.07  mit: 0.45  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.37  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: mitochondrial
	 28.0 %: nuclear
	 16.0 %: Golgi
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U08391-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1