| Contig-U08389-1 |
| Contig ID |
Contig-U08389-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
134 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
3837773 |
| End point |
3837907 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
2 |
| Number of EST |
1 |
| Link to clone list |
U08389 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.13 |
| Homology vs DNA |
Query= Contig-U08389-1 (Contig-U08389-1Q) /CSM_Contig/Contig-U08389-1Q.Seq.d
(134 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU272390) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 266 2e-67 1
(AU272389) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 266 2e-67 1
(ER457440) 1092963874661 Global-Ocean-Sampling_GS-35-01-01-1... 40 3e-04 2
(AM465043) Vitis vinifera contig VV78X262741.3, whole genome... 40 0.001 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 42 0.003 2
(AC183789) Mus musculus BAC clone RP24-44I13 from chromosome... 44 0.012 2
(AC201929) Mus musculus chromosome Y clone CH36-14F17, *** S... 44 0.012 2
(AC163279) Mus musculus BAC clone RP24-112D16 from chromosom... 44 0.012 2
(AC195650) Mus musculus BAC clone CH36-431D21 from chromosom... 44 0.012 2
(AC214055) Mus musculus chromosome Y clone CH36-489D15, WORK... 44 0.012 2
(AC202837) Mus musculus chromosome Y clone CH36-186F2, WORKI... 44 0.012 2
(AC193216) Mus musculus BAC clone CH36-151N21 from chromosom... 44 0.012 2
(CR762413) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.012 2
(AC220939) Mus musculus chromosome Y clone RP24-134N6, WORKI... 44 0.012 2
(AC147625) Mus musculus BAC clone RP24-348P17 from chromosom... 44 0.012 2
(AC206099) Mus musculus BAC clone RP24-371J13 from chromosom... 44 0.012 2
(AC229592) Mus musculus chromosome Y clone CH36-337J22, WORK... 44 0.012 2
(AC129774) Mus musculus BAC clone RP24-167G16 from chromosom... 44 0.012 2
(AC127261) Mus musculus BAC clone RP24-316F4 from chromosome... 44 0.012 2
(AC216059) Mus musculus chromosome Y clone CH36-80N22, WORKI... 44 0.012 2
(AC222563) Mus musculus chromosome Y clone CH36-426O1, WORKI... 44 0.012 2
(AC193888) Mus musculus BAC clone CH36-143P3 from chromosome... 44 0.012 2
(AC192056) Mus musculus BAC clone CH36-325O14 from chromosom... 44 0.012 2
(AC205766) Mus musculus BAC clone CH36-200O14 from chromosom... 44 0.012 2
(AC151532) Mus musculus BAC clone RP24-279A12 from chromosom... 44 0.012 2
(AC183662) Mus musculus BAC clone RP24-452J21 from chromosom... 44 0.012 2
(AC175663) Mus musculus BAC clone RP24-430F7 from chromosome... 44 0.012 2
(FH417295) CHO_OF4881xm14f1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 0.015 2
(AC197207) Pan troglodytes chromosome 7 clone CH251-284D10, ... 40 0.020 3
(EY316436) CAWX26619.fwd CAWX Helobdella robusta Primary Ear... 38 0.031 2
(EK530447) 1095516007098 Global-Ocean-Sampling_GS-32-01-01-1... 38 0.037 2
(C90387) Dictyostelium discoideum slug cDNA, clone SSI342. 36 0.056 3
(AY160106) Dictyostelium discoideum nucleotide exchange fact... 34 0.059 3
(AL592551) Mouse DNA sequence from clone RP23-12I13 on chrom... 48 0.071 1
(AC206117) Saccoglossus kowalevskii BAC CUGI_SK_BA 001B8 (C... 48 0.071 1
(AC106387) Rattus norvegicus clone CH230-136N2, *** SEQUENCI... 48 0.071 1
(AK036566) Mus musculus adult male bone cDNA, RIKEN full-len... 48 0.071 1
(CE784813) tigr-gss-dog-17000330837344 Dog Library Canis lup... 48 0.071 1
(DT925159) BMSB12023 Hematopoietic stem cells Mus musculus c... 48 0.071 1
(DT904358) BMSB12091 Hematopoietic stem cells Mus musculus c... 48 0.071 1
(BY565364) Mus musculus activated spleen cDNA, RIKEN full-le... 48 0.071 1
(AI429478) mo04c01.x1 Stratagene mouse lung 937302 Mus muscu... 48 0.071 1
(BB136441) Mus musculus adult male bone cDNA, RIKEN full-len... 48 0.071 1
(FG223632) Aats00902 Antheraea assama fifth instar larval te... 48 0.071 1
(AC216702) Solanum lycopersicum chromosome 7 clone C07SLm009... 34 0.17 2
(AM434824) Vitis vinifera contig VV78X255230.50, whole genom... 32 0.18 2
(AC178472) Strongylocentrotus purpuratus clone R3-3035A8, WO... 40 0.19 4
(CU799264) A BAC library has been constructed from PN40024 g... 32 0.21 2
(EY332393) CAWY4826.rev CAWY Helobdella robusta Subtracted E... 36 0.21 2
(EY327291) CAWY12524.rev CAWY Helobdella robusta Subtracted ... 36 0.21 2
(EY329834) CAWY3020.rev CAWY Helobdella robusta Subtracted E... 36 0.21 2
(EY326500) CAWY11645.rev CAWY Helobdella robusta Subtracted ... 36 0.21 2
(EY328997) CAWY2006.rev CAWY Helobdella robusta Subtracted E... 36 0.21 2
(EY333488) CAWY5723.rev CAWY Helobdella robusta Subtracted E... 36 0.21 2
(EY325983) CAWY11295.rev CAWY Helobdella robusta Subtracted ... 36 0.21 2
(EY339347) CAWY9611.rev CAWY Helobdella robusta Subtracted E... 36 0.21 2
(EY339737) CAWY9867.rev CAWY Helobdella robusta Subtracted E... 36 0.21 2
(EY325796) CAWY11168.rev CAWY Helobdella robusta Subtracted ... 36 0.21 2
(AC177694) Strongylocentrotus purpuratus clone R3-1013E5, WO... 42 0.22 2
(BJ431667) Dictyostelium discoideum cDNA clone:ddv15e03, 3' ... 36 0.23 3
(EF119975) HIV-1 isolate F361 from Argentina vpu gene, compl... 42 0.26 2
(AL035688) Human DNA sequence from clone RP1-173A13 on chrom... 40 0.27 6
(CT030701) Mouse DNA sequence from clone RP23-51A2 on chromo... 46 0.28 1
(AC147565) Mus musculus BAC clone RP23-116P18 from 9, comple... 46 0.28 1
(AC133495) Mus musculus BAC clone RP24-331G15 from chromosom... 46 0.28 1
(AC129223) Mus musculus BAC clone RP24-535L7 from 9, complet... 46 0.28 1
(AL513444) Neurospora crassa DNA linkage group V BAC contig ... 46 0.28 1
(AC211181) Zea mays chromosome 8 clone CH201-317F7; ZMMBBc03... 46 0.28 1
(EI836864) POTEV26TR Solanum tuberosum RHPOTKEY BAC ends Sol... 46 0.28 1
(DT289443) JGI_CAAW2514.fwd CAAW Pimephales promelas testis ... 46 0.28 1
(BJ433259) Dictyostelium discoideum cDNA clone:ddv21c08, 3' ... 36 0.33 3
(AM430672) Vitis vinifera contig VV78X059796.18, whole genom... 38 0.34 2
(AC189399) Brassica rapa subsp. pekinensis clone KBrB056I08,... 38 0.38 5
(AC204215) Rhesus Macaque BAC CH250-499F11 () complete sequ... 36 0.43 4
(EY358673) CAWZ5922.fwd CAWZ Helobdella robusta Primary Late... 36 0.44 2
(EY360915) CAWZ7436.fwd CAWZ Helobdella robusta Primary Late... 36 0.46 2
(AC212847) Populus trichocarpa clone POP041-B02, complete se... 40 0.50 4
(AC184676) Strongylocentrotus purpuratus clone R3-1002H15, W... 42 0.50 3
(AC114143) Rattus norvegicus clone CH230-141A22, *** SEQUENC... 32 0.59 2
(AC161475) Pan troglodytes BAC clone CH251-252J1 from chromo... 36 0.60 2
(AC200739) Zea mays chromosome 9 clone CH201-344H14; ZMMBBc0... 36 0.60 2
(AU061279) Dictyostelium discoideum slug cDNA, clone SLD664. 32 0.65 2
(CR774182) Zebrafish DNA sequence from clone DKEY-3L1 in lin... 44 0.66 2
(AC176914) Strongylocentrotus purpuratus clone R3-1104L12, W... 40 0.67 4
(EV827314) TT1DL31TH Tetrahymena thermophila SB210 cDNA libr... 36 0.78 2
(ET743610) CHO_OF256xm18f1.ab1 CHO_OF Nicotiana tabacum geno... 32 0.78 2
(AQ935795) CpG2654B CpIOWAgDNA1 Cryptosporidium parvum genom... 36 0.78 2
(AQ449501) 500001C04.x1 CpIOWAM13mp18gDNA1 Cryptosporidium p... 36 0.79 2
(ET743657) CHO_OF256xk18r1.ab1 CHO_OF Nicotiana tabacum geno... 32 0.79 2
(ET743666) CHO_OF256xm20r1.ab1 CHO_OF Nicotiana tabacum geno... 32 0.80 2
(EY391637) CAXA9375.fwd CAXA Helobdella robusta Subtracted L... 36 0.92 2
(AL645730) Human DNA sequence from clone RP11-93G23 on chrom... 40 1.0 2
(AC021336) Homo sapiens clone RP11-24G19, WORKING DRAFT SEQU... 44 1.1 2
(CT030153) Zebrafish DNA sequence from clone DKEYP-80E12 in ... 44 1.1 1
(CR954145) Zebrafish DNA sequence from clone DKEY-106N22 in ... 44 1.1 1
(CR936977) Zebrafish DNA sequence from clone CH211-24O8 in l... 44 1.1 1
(BX322607) Zebrafish DNA sequence from clone DKEYP-20F6 in l... 44 1.1 1
(BX322588) Zebrafish DNA sequence from clone DKEYP-55C8 in l... 44 1.1 1
(AL772396) Zebrafish DNA sequence from clone CH211-253F14. 44 1.1 1
(DQ767700) HIV-1 isolate CFARC560 from Argentina vpu protein... 44 1.1 1
>(AU272390) Dictyostelium discoideum gamete cDNA clone:FC-IC1305, 3'
end single read.
Length = 135
Score = 266 bits (134), Expect = 2e-67
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1 actagtagcagcagtagtagcaacaataataataatttttcatcagttccatcacataat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actagtagcagcagtagtagcaacaataataataatttttcatcagttccatcacataat 60
Query: 61 atttatacaccatcttgtcttttatcaaatctcaataatgacactgattctattattcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttatacaccatcttgtcttttatcaaatctcaataatgacactgattctattattcca 120
Query: 121 aatatgaatggtag 134
||||||||||||||
Sbjct: 121 aatatgaatggtag 134
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 191,698,221
Number of extensions: 17070702
Number of successful extensions: 7189680
Number of sequences better than 10.0: 525
Length of query: 134
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 112
Effective length of database: 93,199,600,587
Effective search space: 10438355265744
Effective search space used: 10438355265744
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)
|
| protein update |
2009. 6.24 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
1 |
| FC-IC (SUB) |
1 |