Contig-U08365-1
Contig ID Contig-U08365-1
Contig update 2002. 9.13
Contig sequence
>Contig-U08365-1 (Contig-U08365-1Q) /CSM_Contig/Contig-U08365-1Q.Seq.d
ACCATTGCTTTTGATCCACTCCTAACTGGAAAACTAGAATTATCAGTAAA
TATATCATAGAAAAATACATTACCAGTAATATTCAATGTTGGATCACCAG
TTGATGATACAATTAACATACTCTTACTTATTGAAATATCAACACCATAT
CCAGTTGCAATATTCTCTGAAATTGAATCAAATAATCTAAATTCTGTTGC
ATTTGTAATTTCTTTAATTTTATTTGAAAAACAAAATAAACAATTATTAT
TATTATTATTATTATTATTATTATTATTATCATTACTACTATTAACTTTA
TTTAATAAATTATTACTACTATCACTATCATTTGAATTCGAACTACTACT
TGAACTTGAACTTGAACTACTACTACTTGAACTTGAACCATTTGGTTCAT
AATTTTTATAATACATATCAACTACTTCCTCTTCAGAATATCCAATTATT
ACCCATTCATCATTAAATGTCATTGTAGATGGGCATGATCTTTTTAAAAT
AAATAAATAAATAAAAATAAATAAAAAATAAATAGGTTAATTTAATAATT
TAAAAAAAAAATAAAAAATTAAAAAATTATAATTATTTACTCAGTTCTTA
AAGTTGTTTGAGCTTTATAATCAGTAAGTAAAGTATTATTAACAACTTCA
ATTAATACAAATGCACTATTATATTCAATTTGAATTTGAGATTTATTTGG
TGACATGCAAATACCACAAAGACCTATAGCAATTTTATTTTCATAAACAT
CCAATGCAGTTGTG

Gap no gap
Contig length 764
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1894258
End point 1895022
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U08365
List of clone(s)

est1=FC-IC1761F,1,687
est2=FC-IC1761Z,106,765
Translated Amino Acid sequence
tiafdplltgklelsvnis*KNTLPVIFNVGSPVDDTINILLLIEISTPYPVAIFSEIES
NNLNSVAFVISLILFEKQNKQLLLLLLLLLLLLSLLLLTLFNKLLLLSLSFEFELLLELE
LELLLLELEPFGS*fl*yisttssseypiithsslnvivdghdlfkink*ikinkk*ig*
fnnlkkk*kikkl*lftqflklfelynq*vkyy*qlqliqmhyyiqfefeiylvtckyhk
dl*qfyfhkhpmql


Translated Amino Acid sequence (All Frames)
Frame A:
tiafdplltgklelsvnis*KNTLPVIFNVGSPVDDTINILLLIEISTPYPVAIFSEIES
NNLNSVAFVISLILFEKQNKQLLLLLLLLLLLLSLLLLTLFNKLLLLSLSFEFELLLELE
LELLLLELEPFGS*fl*yisttssseypiithsslnvivdghdlfkink*ikinkk*ig*
fnnlkkk*kikkl*lftqflklfelynq*vkyy*qlqliqmhyyiqfefeiylvtckyhk
dl*qfyfhkhpmql


Frame B:
plllihs*len*nyq*iyhrkihyq*ysmldhqlmiqltysyllkyqhhiqlqyslklnq
ii*illhl*fl*fylknkinnyyyyyyyyyyyyhyyy*lylinyyyyhyhlnsnyylnln
lnyyylnlnhlvhnfyntyqllplqniqllpihh*msl*mgmiflk*ink*k*iknk*vn
lii*kknkklknynyllss*sclsfiisk*siinnfn*ykctiifnlnlrfiw*hanttk
tysnfifiniqcsc


Frame C:
hcf*stpnwktriiskyiiekyitsniqcwits**yn*htlty*nintisscnil*n*ik
*skfccicnffnfi*ktk*tiiiiiiiiiiiiiittinfi**iittitii*irttt*t*t
*tttt*t*tiwfiifiihinyflfrisnyypfiikchcrwa*sf*nk*inknk*kinrli
**fkkkikn*kiiiiysvlkvv*al*svskvllttsintnallysi*i*dlfgdmqipqr
piailfs*tsnavv


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U08365-1 (Contig-U08365-1Q)
/CSM_Contig/Contig-U08365-1Q.Seq.d
(764 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U08365-1 (Contig-U08365-1Q) /CSM_Contig/Conti... 480 e-135
Contig-U14888-1 (Contig-U14888-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U11921-1 (Contig-U11921-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U14799-1 (Contig-U14799-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U13989-1 (Contig-U13989-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U01844-1 (Contig-U01844-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U13640-1 (Contig-U13640-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U12540-1 (Contig-U12540-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U12238-1 (Contig-U12238-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U12201-1 (Contig-U12201-1Q) /CSM_Contig/Conti... 34 0.21

>Contig-U08365-1 (Contig-U08365-1Q) /CSM_Contig/Contig-U08365-1Q.Seq.d
Length = 764

Score = 480 bits (242), Expect = e-135
Identities = 242/242 (100%)
Strand = Plus / Plus


Query: 1 accattgcttttgatccactcctaactggaaaactagaattatcagtaaatatatcatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accattgcttttgatccactcctaactggaaaactagaattatcagtaaatatatcatag 60


Query: 61 aaaaatacattaccagtaatattcaatgttggatcaccagttgatgatacaattaacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaatacattaccagtaatattcaatgttggatcaccagttgatgatacaattaacata 120


Query: 121 ctcttacttattgaaatatcaacaccatatccagttgcaatattctctgaaattgaatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcttacttattgaaatatcaacaccatatccagttgcaatattctctgaaattgaatca 180


Query: 181 aataatctaaattctgttgcatttgtaatttctttaattttatttgaaaaacaaaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aataatctaaattctgttgcatttgtaatttctttaattttatttgaaaaacaaaataaa 240


Query: 241 ca 242
||
Sbjct: 241 ca 242


Score = 373 bits (188), Expect = e-103
Identities = 188/188 (100%)
Strand = Plus / Plus


Query: 577 ttataattatttactcagttcttaaagttgtttgagctttataatcagtaagtaaagtat 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ttataattatttactcagttcttaaagttgtttgagctttataatcagtaagtaaagtat 636


Query: 637 tattaacaacttcaattaatacaaatgcactattatattcaatttgaatttgagatttat 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tattaacaacttcaattaatacaaatgcactattatattcaatttgaatttgagatttat 696


Query: 697 ttggtgacatgcaaataccacaaagacctatagcaattttattttcataaacatccaatg 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ttggtgacatgcaaataccacaaagacctatagcaattttattttcataaacatccaatg 756


Query: 757 cagttgtg 764
||||||||
Sbjct: 757 cagttgtg 764


Score = 220 bits (111), Expect = 2e-57
Identities = 111/111 (100%)
Strand = Plus / Plus


Query: 384 tgaaccatttggttcataatttttataatacatatcaactacttcctcttcagaatatcc 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaaccatttggttcataatttttataatacatatcaactacttcctcttcagaatatcc 443


Query: 444 aattattacccattcatcattaaatgtcattgtagatgggcatgatctttt 494
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aattattacccattcatcattaaatgtcattgtagatgggcatgatctttt 494


Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 316 ctactatcactatcatttgaattc 339
||||||||||||||||||||||||
Sbjct: 316 ctactatcactatcatttgaattc 339


>Contig-U14888-1 (Contig-U14888-1Q) /CSM_Contig/Contig-U14888-1Q.Seq.d
Length = 765

Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 206 taatttctttaattttatt 224
|||||||||||||||||||
Sbjct: 64 taatttctttaattttatt 82


>Contig-U11921-1 (Contig-U11921-1Q) /CSM_Contig/Contig-U11921-1Q.Seq.d
Length = 2241

Score = 38.2 bits (19), Expect = 0.014
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 202 tttgtaatttctttaattt 220
|||||||||||||||||||
Sbjct: 1160 tttgtaatttctttaattt 1142


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,741
Number of Sequences: 6905
Number of extensions: 11741
Number of successful extensions: 1554
Number of sequences better than 10.0: 163
length of query: 764
length of database: 5,674,871
effective HSP length: 16
effective length of query: 748
effective length of database: 5,564,391
effective search space: 4162164468
effective search space used: 4162164468
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.13
Homology vs DNA
Query= Contig-U08365-1 (Contig-U08365-1Q) /CSM_Contig/Contig-U08365-1Q.Seq.d
(764 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU275233) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 480 0.0 4
(AU275234) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 371 0.0 4
(EK540198) 1095516054789 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.086 2
(EK558771) 1095518009591 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.092 2
(AL929276) Zebrafish DNA sequence from clone CH211-59H6 in l... 42 0.21 5
(CP000728) Clostridium botulinum F str. Langeland, complete ... 38 0.26 15
(AC193275) Aotus nancymaae clone CH258-343K21, WORKING DRAFT... 42 0.47 4
(EK348009) 1095467585205 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.49 1
(ED623408) GM_WBa0019N12.f GM_WBa Glycine max genomic clone ... 48 0.49 1
(AC012627) Homo sapiens chromosome 19 clone CTD-2130K10, com... 40 0.54 2
(BX511034) Zebrafish DNA sequence from clone DKEY-57C15 in l... 42 0.58 3
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 0.67 9
(AL745970) Danio rerio genomic clone DKEY-19D18, genomic sur... 40 0.97 2
(AM285311) Spiroplasma citri GII3-3X chromosome, contig Cont... 40 1.1 6
(CW103767) 104_472_11012066_116_34431_005 Sorghum methylatio... 36 1.1 2
(EJ765578) 1092963210160 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.2 2
(EK152822) 1095456061378 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.3 2
(CJ442662) Macaca fascicularis mRNA, clone: QccE-20185, 5' e... 42 1.4 2
(CU466289) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 1.4 5
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 34 1.7 7
(CR405707) Zebrafish DNA sequence from clone DKEY-93P24 in l... 38 1.8 5
(BX950194) Zebrafish DNA sequence from clone CH211-218C6 in ... 40 1.8 4
(BX682552) Zebrafish DNA sequence from clone DKEY-120C6 in l... 46 1.9 1
(AL845298) Mouse DNA sequence from clone RP23-280N11 on chro... 46 1.9 1
(AC153895) Mus musculus 6 BAC RP23-114F22 (Roswell Park Canc... 46 1.9 1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1
(AP005924) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.9 1
(AP005187) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.9 1
(AP001081) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.9 1
(EA705770) Sequence 84649 from patent US 7365185. 46 1.9 1
(EA704088) Sequence 82967 from patent US 7365185. 46 1.9 1
(EA684573) Sequence 63452 from patent US 7365185. 46 1.9 1
(CS788881) Sequence 137 from Patent WO2005031001. 46 1.9 1
(U47144) Caenorhabditis elegans cosmid ZC53, complete sequence. 46 1.9 1
(AL451073) Human DNA sequence from clone RP11-384A24 on chro... 46 1.9 1
(AC153826) Mus musculus clone RP23-119H23, WORKING DRAFT SEQ... 46 1.9 1
(AC126875) Rattus norvegicus clone CH230-50H11, *** SEQUENCI... 46 1.9 1
(AC098834) Oryza sativa Japonica Group chromosome 5 clone OJ... 46 1.9 1
(CU657973) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.9 1
(AC181807) Strongylocentrotus purpuratus clone R3-1025B23, W... 46 1.9 1
(AC179527) Strongylocentrotus purpuratus clone R3-6E9, WORKI... 46 1.9 1
(AC176305) Strongylocentrotus purpuratus clone R3-3055O23, W... 46 1.9 1
(AC006885) Caenorhabditis elegans clone Y59E1, *** SEQUENCIN... 46 1.9 1
(AQ159230) nbxb0013M21f CUGI Rice BAC Library Oryza sativa J... 46 1.9 1
(CL067568) CH216-111G5_RM1.1 CH216 Xenopus (Silurana) tropic... 46 1.9 1
(DY303444) KN0AAQ5YM20RM1 CitNFL Citrus clementina cDNA 5', ... 46 1.9 1
(CN631224) taf52h04.y1 Hydra EST Darmstadt I Hydra magnipapi... 46 1.9 1
(AC186274) Loxodonta africana clone VMRC15-193J6, WORKING DR... 38 2.1 4
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont... 40 2.1 4
(AC189241) Brassica rapa subsp. pekinensis clone KBrB016K20,... 38 2.4 4
(AC134886) Oryza sativa chromosome 3 BAC OSJNBa0002D18 genom... 36 2.7 4
(EK391027) 1095469502613 Global-Ocean-Sampling_GS-31-01-01-1... 32 2.8 3
(AM463110) Vitis vinifera contig VV78X195728.4, whole genome... 34 2.8 3
(AM054063) Eudiplodinium maggii EST, clone Em02_G08. 34 2.9 2
(AU267712) Dictyostelium discoideum vegetative cDNA clone:VS... 34 3.3 2
(AM054118) Eudiplodinium maggii EST, clone Em04_A08. 34 3.6 2
(AC170799) Medicago truncatula clone mth2-194j10, complete s... 34 4.2 6
(EH597372) FDR306-P00005-DEPE-R_E08 FDR306 Danio rerio cDNA ... 32 4.2 3
(EH579998) FDR306-P00005-DEPE-F_E08 FDR306 Danio rerio cDNA ... 32 4.4 3
(EJ955346) 1093018969263 Global-Ocean-Sampling_GS-30-02-01-1... 36 4.5 2
(EK003594) 1093139003366 Global-Ocean-Sampling_GS-30-02-01-1... 36 4.6 2
(AP003969) Homo sapiens genomic DNA, chromosome 11q, clone:R... 40 4.9 6
(EK299464) 1095462359557 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.0 2
(EK162466) 1095458036138 Global-Ocean-Sampling_GS-31-01-01-1... 36 5.0 2
(EK087263) 1092961165040 Global-Ocean-Sampling_GS-31-01-01-1... 36 5.2 2
(EJ496631) 1095403579723 Global-Ocean-Sampling_GS-28-01-01-1... 36 5.4 2
(DX529489) GH_MBb0043I02r GH_MBb Gossypium hirsutum genomic ... 40 6.4 2
(EY844188) CA26-C1-002-018-F11-CT.F Sour orange leaf, field ... 32 6.6 3
(AC178971) Strongylocentrotus purpuratus clone R3-3121P22, W... 42 6.6 3
(AC173511) Bos taurus clone CH240-300E20, WORKING DRAFT SEQU... 38 6.9 7
(AR549093) Sequence 4224 from patent US 6747137. 40 7.4 2
(BV077854) S208P6703FB7.T0 129S1/SvImJ Mus musculus STS geno... 44 7.6 1
(AC161527) Mus musculus chromosome 3, clone RP23-174B21, com... 44 7.6 1
(AC188086) Macaca mulatta chromosome UNK clone CH250-99H12, ... 44 7.6 1
(AC187615) Pan troglodytes BAC clone CH251-597A3 from chromo... 44 7.6 1
(EU382072) Arabidopsis halleri subsp. halleri clone BAC_17L0... 44 7.6 1
(CU457801) M.truncatula DNA sequence from clone MTH2-38N16 o... 44 7.6 1
(AC196855) Medicago truncatula chromosome 2 BAC clone mth2-1... 44 7.6 1
(AC126014) Medicago truncatula clone mth2-18j5, complete seq... 44 7.6 1
(AC125473) Medicago truncatula clone mth2-8j13, complete seq... 44 7.6 1
(CP000219) Drosophila melanogaster genomic scaffold 21100002... 44 7.6 1
(AC006459) Homo sapiens BAC clone GS1-281N8 from 7, complete... 44 7.6 1
(AC004876) Homo sapiens PAC clone RP4-747G18 from 7q22-31.1,... 44 7.6 1
(AC152130) Dasypus novemcinctus clone VMRC5-191A7, WORKING D... 44 7.6 1
(AC147733) Macropus eugenii clone ME_KBa-555A7, WORKING DRAF... 44 7.6 1
(AC147330) Pan troglodytes chromosome x clone RP43-8A14, WOR... 44 7.6 1
(AC138651) Homo sapiens chromosome 15 clone RP11-1381G13 map... 44 7.6 1
(AC126914) Rattus norvegicus clone CH230-483H8, *** SEQUENCI... 44 7.6 1
(AC115730) Mus musculus chromosome 3 clone RP23-174B21 map 3... 44 7.6 1
(AC095076) Rattus norvegicus clone CH230-7B12, WORKING DRAFT... 44 7.6 1
(CU468235) M.truncatula DNA sequence *** SEQUENCING IN PROGR... 44 7.6 1
(AC225476) Medicago truncatula clone mth2-18d16, WORKING DRA... 44 7.6 1
(AC222526) Chlorocebus aethiops clone CH252-302I19, WORKING ... 44 7.6 1
(AC212653) Solanum lycopersicum chromosome 7 clone C07SLm009... 44 7.6 1
(AC212530) Chlorocebus aethiops clone CH252-195D3, WORKING D... 44 7.6 1
(AC179256) Strongylocentrotus purpuratus clone R3-42M3, WORK... 44 7.6 1
(AC172325) Macaca mulatta clone CH250-402B2, WORKING DRAFT S... 44 7.6 1
(AC017826) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 7.6 1

>(AU275233) Dictyostelium discoideum gamete cDNA clone:FC-IC1761, 5'
end single read.
Length = 687

Score = 480 bits (242), Expect(4) = 0.0
Identities = 242/242 (100%)
Strand = Plus / Plus


Query: 1 accattgcttttgatccactcctaactggaaaactagaattatcagtaaatatatcatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accattgcttttgatccactcctaactggaaaactagaattatcagtaaatatatcatag 60


Query: 61 aaaaatacattaccagtaatattcaatgttggatcaccagttgatgatacaattaacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaaatacattaccagtaatattcaatgttggatcaccagttgatgatacaattaacata 120


Query: 121 ctcttacttattgaaatatcaacaccatatccagttgcaatattctctgaaattgaatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcttacttattgaaatatcaacaccatatccagttgcaatattctctgaaattgaatca 180


Query: 181 aataatctaaattctgttgcatttgtaatttctttaattttatttgaaaaacaaaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aataatctaaattctgttgcatttgtaatttctttaattttatttgaaaaacaaaataaa 240


Query: 241 ca 242
||
Sbjct: 241 ca 242

Score = 210 bits (106), Expect(4) = 0.0
Identities = 106/106 (100%)
Strand = Plus / Plus


Query: 389 catttggttcataatttttataatacatatcaactacttcctcttcagaatatccaatta 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catttggttcataatttttataatacatatcaactacttcctcttcagaatatccaatta 448


Query: 449 ttacccattcatcattaaatgtcattgtagatgggcatgatctttt 494
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttacccattcatcattaaatgtcattgtagatgggcatgatctttt 494

Score = 115 bits (58), Expect(4) = 0.0
Identities = 61/62 (98%)
Strand = Plus / Plus


Query: 626 aagtaaagtattattaacaacttcaattaatacaaatgcactattatattcaatttgaat 685
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aagtaaaggattattaacaacttcaattaatacaaatgcactattatattcaatttgaat 685


Query: 686 tt 687
||
Sbjct: 686 tt 687

Score = 93.7 bits (47), Expect(4) = 0.0
Identities = 47/47 (100%)
Strand = Plus / Plus


Query: 578 tataattatttactcagttcttaaagttgtttgagctttataatcag 624
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tataattatttactcagttcttaaagttgtttgagctttataatcag 625

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 764,241,046
Number of extensions: 50410629
Number of successful extensions: 4613102
Number of sequences better than 10.0: 163
Length of query: 764
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 740
Effective length of database: 97,308,875,965
Effective search space: 72008568214100
Effective search space used: 72008568214100
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U08365-1 (Contig-U08365-1Q) /CSM_Contig/Contig-U08365-1Q.Seq.d
(764 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CT573071_2180(CT573071|pid:none) Kuenenia stuttgartiensis genome... 33 7.5

>CT573071_2180(CT573071|pid:none) Kuenenia stuttgartiensis genome
fragment KUST_E (5 of 5).
Length = 601

Score = 33.5 bits (75), Expect = 7.5
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = +1

Query: 37 ELSVNIS*KNTLPVIFNVGSPVDDTINILLLIEISTPYPVAIFSEIESNNLNSVAFVIS 213
+++ N+S NT P + +V SP D +I++ +ST V I+S+ +N+V+F++S
Sbjct: 201 KMASNLSADNTPPEVDSV-SPADGSIDV----SVSTELTVTFNEAIDSSTINTVSFIVS 254

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 727,596,559
Number of extensions: 11374240
Number of successful extensions: 25128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25124
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 128
Effective length of database: 637,226,869
Effective search space: 81565039232
Effective search space used: 81565039232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.87 gvh: 0.39 alm: 0.05 top: 0.40 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.08 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial
8.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U08365-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1