Contig-U08365-1 |
Contig ID |
Contig-U08365-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
764 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
1894258 |
End point |
1895022 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U08365 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.13 |
Homology vs DNA |
Query= Contig-U08365-1 (Contig-U08365-1Q) /CSM_Contig/Contig-U08365-1Q.Seq.d (764 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU275233) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 480 0.0 4 (AU275234) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 371 0.0 4 (EK540198) 1095516054789 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.086 2 (EK558771) 1095518009591 Global-Ocean-Sampling_GS-32-01-01-1... 44 0.092 2 (AL929276) Zebrafish DNA sequence from clone CH211-59H6 in l... 42 0.21 5 (CP000728) Clostridium botulinum F str. Langeland, complete ... 38 0.26 15 (AC193275) Aotus nancymaae clone CH258-343K21, WORKING DRAFT... 42 0.47 4 (EK348009) 1095467585205 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.49 1 (ED623408) GM_WBa0019N12.f GM_WBa Glycine max genomic clone ... 48 0.49 1 (AC012627) Homo sapiens chromosome 19 clone CTD-2130K10, com... 40 0.54 2 (BX511034) Zebrafish DNA sequence from clone DKEY-57C15 in l... 42 0.58 3 (AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 38 0.67 9 (AL745970) Danio rerio genomic clone DKEY-19D18, genomic sur... 40 0.97 2 (AM285311) Spiroplasma citri GII3-3X chromosome, contig Cont... 40 1.1 6 (CW103767) 104_472_11012066_116_34431_005 Sorghum methylatio... 36 1.1 2 (EJ765578) 1092963210160 Global-Ocean-Sampling_GS-30-02-01-1... 42 1.2 2 (EK152822) 1095456061378 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.3 2 (CJ442662) Macaca fascicularis mRNA, clone: QccE-20185, 5' e... 42 1.4 2 (CU466289) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 1.4 5 (AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 34 1.7 7 (CR405707) Zebrafish DNA sequence from clone DKEY-93P24 in l... 38 1.8 5 (BX950194) Zebrafish DNA sequence from clone CH211-218C6 in ... 40 1.8 4 (BX682552) Zebrafish DNA sequence from clone DKEY-120C6 in l... 46 1.9 1 (AL845298) Mouse DNA sequence from clone RP23-280N11 on chro... 46 1.9 1 (AC153895) Mus musculus 6 BAC RP23-114F22 (Roswell Park Canc... 46 1.9 1 (AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1 (AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1 (AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.9 1 (AP005924) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.9 1 (AP005187) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.9 1 (AP001081) Oryza sativa Japonica Group genomic DNA, chromoso... 46 1.9 1 (EA705770) Sequence 84649 from patent US 7365185. 46 1.9 1 (EA704088) Sequence 82967 from patent US 7365185. 46 1.9 1 (EA684573) Sequence 63452 from patent US 7365185. 46 1.9 1 (CS788881) Sequence 137 from Patent WO2005031001. 46 1.9 1 (U47144) Caenorhabditis elegans cosmid ZC53, complete sequence. 46 1.9 1 (AL451073) Human DNA sequence from clone RP11-384A24 on chro... 46 1.9 1 (AC153826) Mus musculus clone RP23-119H23, WORKING DRAFT SEQ... 46 1.9 1 (AC126875) Rattus norvegicus clone CH230-50H11, *** SEQUENCI... 46 1.9 1 (AC098834) Oryza sativa Japonica Group chromosome 5 clone OJ... 46 1.9 1 (CU657973) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.9 1 (AC181807) Strongylocentrotus purpuratus clone R3-1025B23, W... 46 1.9 1 (AC179527) Strongylocentrotus purpuratus clone R3-6E9, WORKI... 46 1.9 1 (AC176305) Strongylocentrotus purpuratus clone R3-3055O23, W... 46 1.9 1 (AC006885) Caenorhabditis elegans clone Y59E1, *** SEQUENCIN... 46 1.9 1 (AQ159230) nbxb0013M21f CUGI Rice BAC Library Oryza sativa J... 46 1.9 1 (CL067568) CH216-111G5_RM1.1 CH216 Xenopus (Silurana) tropic... 46 1.9 1 (DY303444) KN0AAQ5YM20RM1 CitNFL Citrus clementina cDNA 5', ... 46 1.9 1 (CN631224) taf52h04.y1 Hydra EST Darmstadt I Hydra magnipapi... 46 1.9 1 (AC186274) Loxodonta africana clone VMRC15-193J6, WORKING DR... 38 2.1 4 (AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont... 40 2.1 4 (AC189241) Brassica rapa subsp. pekinensis clone KBrB016K20,... 38 2.4 4 (AC134886) Oryza sativa chromosome 3 BAC OSJNBa0002D18 genom... 36 2.7 4 (EK391027) 1095469502613 Global-Ocean-Sampling_GS-31-01-01-1... 32 2.8 3 (AM463110) Vitis vinifera contig VV78X195728.4, whole genome... 34 2.8 3 (AM054063) Eudiplodinium maggii EST, clone Em02_G08. 34 2.9 2 (AU267712) Dictyostelium discoideum vegetative cDNA clone:VS... 34 3.3 2 (AM054118) Eudiplodinium maggii EST, clone Em04_A08. 34 3.6 2 (AC170799) Medicago truncatula clone mth2-194j10, complete s... 34 4.2 6 (EH597372) FDR306-P00005-DEPE-R_E08 FDR306 Danio rerio cDNA ... 32 4.2 3 (EH579998) FDR306-P00005-DEPE-F_E08 FDR306 Danio rerio cDNA ... 32 4.4 3 (EJ955346) 1093018969263 Global-Ocean-Sampling_GS-30-02-01-1... 36 4.5 2 (EK003594) 1093139003366 Global-Ocean-Sampling_GS-30-02-01-1... 36 4.6 2 (AP003969) Homo sapiens genomic DNA, chromosome 11q, clone:R... 40 4.9 6 (EK299464) 1095462359557 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.0 2 (EK162466) 1095458036138 Global-Ocean-Sampling_GS-31-01-01-1... 36 5.0 2 (EK087263) 1092961165040 Global-Ocean-Sampling_GS-31-01-01-1... 36 5.2 2 (EJ496631) 1095403579723 Global-Ocean-Sampling_GS-28-01-01-1... 36 5.4 2 (DX529489) GH_MBb0043I02r GH_MBb Gossypium hirsutum genomic ... 40 6.4 2 (EY844188) CA26-C1-002-018-F11-CT.F Sour orange leaf, field ... 32 6.6 3 (AC178971) Strongylocentrotus purpuratus clone R3-3121P22, W... 42 6.6 3 (AC173511) Bos taurus clone CH240-300E20, WORKING DRAFT SEQU... 38 6.9 7 (AR549093) Sequence 4224 from patent US 6747137. 40 7.4 2 (BV077854) S208P6703FB7.T0 129S1/SvImJ Mus musculus STS geno... 44 7.6 1 (AC161527) Mus musculus chromosome 3, clone RP23-174B21, com... 44 7.6 1 (AC188086) Macaca mulatta chromosome UNK clone CH250-99H12, ... 44 7.6 1 (AC187615) Pan troglodytes BAC clone CH251-597A3 from chromo... 44 7.6 1 (EU382072) Arabidopsis halleri subsp. halleri clone BAC_17L0... 44 7.6 1 (CU457801) M.truncatula DNA sequence from clone MTH2-38N16 o... 44 7.6 1 (AC196855) Medicago truncatula chromosome 2 BAC clone mth2-1... 44 7.6 1 (AC126014) Medicago truncatula clone mth2-18j5, complete seq... 44 7.6 1 (AC125473) Medicago truncatula clone mth2-8j13, complete seq... 44 7.6 1 (CP000219) Drosophila melanogaster genomic scaffold 21100002... 44 7.6 1 (AC006459) Homo sapiens BAC clone GS1-281N8 from 7, complete... 44 7.6 1 (AC004876) Homo sapiens PAC clone RP4-747G18 from 7q22-31.1,... 44 7.6 1 (AC152130) Dasypus novemcinctus clone VMRC5-191A7, WORKING D... 44 7.6 1 (AC147733) Macropus eugenii clone ME_KBa-555A7, WORKING DRAF... 44 7.6 1 (AC147330) Pan troglodytes chromosome x clone RP43-8A14, WOR... 44 7.6 1 (AC138651) Homo sapiens chromosome 15 clone RP11-1381G13 map... 44 7.6 1 (AC126914) Rattus norvegicus clone CH230-483H8, *** SEQUENCI... 44 7.6 1 (AC115730) Mus musculus chromosome 3 clone RP23-174B21 map 3... 44 7.6 1 (AC095076) Rattus norvegicus clone CH230-7B12, WORKING DRAFT... 44 7.6 1 (CU468235) M.truncatula DNA sequence *** SEQUENCING IN PROGR... 44 7.6 1 (AC225476) Medicago truncatula clone mth2-18d16, WORKING DRA... 44 7.6 1 (AC222526) Chlorocebus aethiops clone CH252-302I19, WORKING ... 44 7.6 1 (AC212653) Solanum lycopersicum chromosome 7 clone C07SLm009... 44 7.6 1 (AC212530) Chlorocebus aethiops clone CH252-195D3, WORKING D... 44 7.6 1 (AC179256) Strongylocentrotus purpuratus clone R3-42M3, WORK... 44 7.6 1 (AC172325) Macaca mulatta clone CH250-402B2, WORKING DRAFT S... 44 7.6 1 (AC017826) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 7.6 1
>(AU275233) Dictyostelium discoideum gamete cDNA clone:FC-IC1761, 5' end single read. Length = 687
Score = 480 bits (242), Expect(4) = 0.0 Identities = 242/242 (100%) Strand = Plus / Plus
Query: 1 accattgcttttgatccactcctaactggaaaactagaattatcagtaaatatatcatag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 accattgcttttgatccactcctaactggaaaactagaattatcagtaaatatatcatag 60
Query: 61 aaaaatacattaccagtaatattcaatgttggatcaccagttgatgatacaattaacata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaaaatacattaccagtaatattcaatgttggatcaccagttgatgatacaattaacata 120
Query: 121 ctcttacttattgaaatatcaacaccatatccagttgcaatattctctgaaattgaatca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ctcttacttattgaaatatcaacaccatatccagttgcaatattctctgaaattgaatca 180
Query: 181 aataatctaaattctgttgcatttgtaatttctttaattttatttgaaaaacaaaataaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aataatctaaattctgttgcatttgtaatttctttaattttatttgaaaaacaaaataaa 240
Query: 241 ca 242 || Sbjct: 241 ca 242
Score = 210 bits (106), Expect(4) = 0.0 Identities = 106/106 (100%) Strand = Plus / Plus
Query: 389 catttggttcataatttttataatacatatcaactacttcctcttcagaatatccaatta 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 catttggttcataatttttataatacatatcaactacttcctcttcagaatatccaatta 448
Query: 449 ttacccattcatcattaaatgtcattgtagatgggcatgatctttt 494 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 ttacccattcatcattaaatgtcattgtagatgggcatgatctttt 494
Score = 115 bits (58), Expect(4) = 0.0 Identities = 61/62 (98%) Strand = Plus / Plus
Query: 626 aagtaaagtattattaacaacttcaattaatacaaatgcactattatattcaatttgaat 685 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 aagtaaaggattattaacaacttcaattaatacaaatgcactattatattcaatttgaat 685
Query: 686 tt 687 || Sbjct: 686 tt 687
Score = 93.7 bits (47), Expect(4) = 0.0 Identities = 47/47 (100%) Strand = Plus / Plus
Query: 578 tataattatttactcagttcttaaagttgtttgagctttataatcag 624 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 tataattatttactcagttcttaaagttgtttgagctttataatcag 625
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 764,241,046 Number of extensions: 50410629 Number of successful extensions: 4613102 Number of sequences better than 10.0: 163 Length of query: 764 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 740 Effective length of database: 97,308,875,965 Effective search space: 72008568214100 Effective search space used: 72008568214100 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.24 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
1 |
FC-IC (SUB) |
1 |