Contig-U08360-1
Contig ID Contig-U08360-1
Contig update 2002. 9.13
Contig sequence
>Contig-U08360-1 (Contig-U08360-1Q) /CSM_Contig/Contig-U08360-1Q.Seq.d
ACAGCACAAAAATCGACACTTCAATTATCAAATCAAAATGCTGTAAATTG
TATTGCTAGTGGTTGTAATGGTGGTTGGTCAGGAAACTATTTCAATTTCT
TTAAAACACCAGGTATTGCTTATGAAAAAGATGATCCATACAAAGCTGTT
ACTGG

Gap no gap
Contig length 155
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3952774
End point 3952619
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 2
Link to clone list U08360
List of clone(s)

est1=FC-IC0711E,1,156
est2=FC-IC1112E,1,156
Translated Amino Acid sequence
TAQKSTLQLSNQNAVNCIASGCNGGWSGNYFNFFKTPGIAYEKDDPYKAVT


Translated Amino Acid sequence (All Frames)
Frame A:
TAQKSTLQLSNQNAVNCIASGCNGGWSGNYFNFFKTPGIAYEKDDPYKAVT


Frame B:
qhknrhfnyqikml*ivllvvvmvvgqetisislkhqvllmkkmihtklll


Frame C:
stkidtsiikskccklyc*wl*wwlvrklfqfl*ntrycl*kr*siqscyw


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U08360-1 (Contig-U08360-1Q)
/CSM_Contig/Contig-U08360-1Q.Seq.d
(155 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U08360-1 (Contig-U08360-1Q) /CSM_Contig/Conti... 307 2e-84
Contig-U12428-1 (Contig-U12428-1Q) /CSM_Contig/Conti... 38 0.003
Contig-U04816-1 (Contig-U04816-1Q) /CSM_Contig/Conti... 36 0.010
Contig-U12742-1 (Contig-U12742-1Q) /CSM_Contig/Conti... 34 0.040
Contig-U12077-1 (Contig-U12077-1Q) /CSM_Contig/Conti... 34 0.040
Contig-U11153-1 (Contig-U11153-1Q) /CSM_Contig/Conti... 34 0.040
Contig-U10135-1 (Contig-U10135-1Q) /CSM_Contig/Conti... 34 0.040
Contig-U14192-1 (Contig-U14192-1Q) /CSM_Contig/Conti... 32 0.16
Contig-U13278-1 (Contig-U13278-1Q) /CSM_Contig/Conti... 32 0.16
Contig-U12834-1 (Contig-U12834-1Q) /CSM_Contig/Conti... 32 0.16

>Contig-U08360-1 (Contig-U08360-1Q) /CSM_Contig/Contig-U08360-1Q.Seq.d
Length = 155

Score = 307 bits (155), Expect = 2e-84
Identities = 155/155 (100%)
Strand = Plus / Plus


Query: 1 acagcacaaaaatcgacacttcaattatcaaatcaaaatgctgtaaattgtattgctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagcacaaaaatcgacacttcaattatcaaatcaaaatgctgtaaattgtattgctagt 60


Query: 61 ggttgtaatggtggttggtcaggaaactatttcaatttctttaaaacaccaggtattgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggttgtaatggtggttggtcaggaaactatttcaatttctttaaaacaccaggtattgct 120


Query: 121 tatgaaaaagatgatccatacaaagctgttactgg 155
|||||||||||||||||||||||||||||||||||
Sbjct: 121 tatgaaaaagatgatccatacaaagctgttactgg 155


>Contig-U12428-1 (Contig-U12428-1Q) /CSM_Contig/Contig-U12428-1Q.Seq.d
Length = 1607

Score = 38.2 bits (19), Expect = 0.003
Identities = 22/23 (95%)
Strand = Plus / Minus


Query: 57 tagtggttgtaatggtggttggt 79
||||||||||| |||||||||||
Sbjct: 898 tagtggttgtagtggtggttggt 876


>Contig-U04816-1 (Contig-U04816-1Q) /CSM_Contig/Contig-U04816-1Q.Seq.d
Length = 594

Score = 36.2 bits (18), Expect = 0.010
Identities = 21/22 (95%)
Strand = Plus / Plus


Query: 134 atccatacaaagctgttactgg 155
||||||| ||||||||||||||
Sbjct: 182 atccatataaagctgttactgg 203


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2330
Number of Sequences: 6905
Number of extensions: 2330
Number of successful extensions: 832
Number of sequences better than 10.0: 287
length of query: 155
length of database: 5,674,871
effective HSP length: 15
effective length of query: 140
effective length of database: 5,571,296
effective search space: 779981440
effective search space used: 779981440
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)
dna update 2008.11.13
Homology vs DNA
Query= Contig-U08360-1 (Contig-U08360-1Q) /CSM_Contig/Contig-U08360-1Q.Seq.d
(155 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AB088483) Dictyostelium discoideum gene for gamete and mati... 307 6e-80 1
(AU272137) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 307 6e-80 1
(AU272136) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 307 6e-80 1
(AU271787) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 307 6e-80 1
(AU271786) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 307 6e-80 1
(AC223284) Bos taurus clone CH240-423F13, WORKING DRAFT SEQU... 50 0.021 1
(EC293192) BRAINF089488F1 POSSUM_01-POSSUM-C-BRAIN-2KB Trich... 50 0.021 1
(AC167625) Bos taurus clone CH240-142M11, *** SEQUENCING IN ... 46 0.33 1
(CW630673) OP__Ba0055K17.f OP__Ba Oryza punctata genomic clo... 46 0.33 1
(AC127635) Rattus norvegicus clone CH230-160J2, *** SEQUENCI... 44 1.3 1
(CV510936) kc65b08.y1 Xiphinema index CSEQDL01 Xiphinema ind... 44 1.3 1
(FF140619) OFAA-aaa52g06.g1 O.flexuosa_EST_pSMART Onchocerca... 44 1.3 1
(BX640594) Zebrafish DNA sequence from clone CH211-235A22 in... 42 5.2 1
(CU856591) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.2 1
(CU467027) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 5.2 1
(AC221132) Bos taurus clone CH240-394E2, WORKING DRAFT SEQUE... 42 5.2 1
(AC177725) Strongylocentrotus purpuratus clone R3-1008P11, W... 42 5.2 1
(AC177618) Strongylocentrotus purpuratus clone R3-1023D11, W... 42 5.2 1
(DU756193) HF130_48_38TR HF130_10-06-02 uncultured marine mi... 42 5.2 1
(DU440132) 1098421050223 CHORI-243 Ovis aries genomic clone ... 42 5.2 1
(CZ600274) OM__Ba0087L01.r OM__Ba Oryza minuta genomic clone... 42 5.2 1
(CO046861) Lr_AT1CF_28A07_SKplus Earthworm Atrazine Exposure... 42 5.2 1
(CD900438) G356.001I20F010705 G356 Triticum aestivum cDNA cl... 42 5.2 1
(EV950523) rcki21_j5.y1 cki Sus scrofa cDNA 5', mRNA sequence. 42 5.2 1
(CP000323) Psychrobacter cryohalolentis K5, complete genome. 42 5.2 1
(AC154540) Mus musculus BAC clone RP23-452G1 from chromosome... 36 5.8 2
(FF693192) XABT105009.fwd Gateway compatible cien cDNA libra... 34 6.9 2
(FK229496) XABT230110.b1 Gateway compatible cien cDNA librar... 34 7.3 2
(FF726564) XABT42141.fwd Gateway compatible cien cDNA librar... 34 8.0 2
(EI480088) PV_GBa0092E08.r PV_GBa Phaseolus vulgaris genomic... 34 8.0 2
(DC218261) Plasmodium berghei strain ANKA cDNA clone:MG02144... 30 8.1 3
(AG676682) Macaca fuscata fuscata DNA, clone: MSB2-103E23_R,... 38 8.6 2

>(AB088483) Dictyostelium discoideum gene for gamete and mating-type
specific protein A, complete cds.
Length = 1747

Score = 307 bits (155), Expect = 6e-80
Identities = 155/155 (100%)
Strand = Plus / Plus


Query: 1 acagcacaaaaatcgacacttcaattatcaaatcaaaatgctgtaaattgtattgctagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 acagcacaaaaatcgacacttcaattatcaaatcaaaatgctgtaaattgtattgctagt 1144


Query: 61 ggttgtaatggtggttggtcaggaaactatttcaatttctttaaaacaccaggtattgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 ggttgtaatggtggttggtcaggaaactatttcaatttctttaaaacaccaggtattgct 1204


Query: 121 tatgaaaaagatgatccatacaaagctgttactgg 155
|||||||||||||||||||||||||||||||||||
Sbjct: 1205 tatgaaaaagatgatccatacaaagctgttactgg 1239

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 190,430,452
Number of extensions: 11415320
Number of successful extensions: 3239227
Number of sequences better than 10.0: 32
Length of query: 155
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 133
Effective length of database: 93,199,600,587
Effective search space: 12395546878071
Effective search space used: 12395546878071
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U08360-1 (Contig-U08360-1Q) /CSM_Contig/Contig-U08360-1Q.Seq.d
(155 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene... 112 4e-24
AC116979_83(AC116979|pid:none) Dictyostelium discoideum chromoso... 45 0.001
(Q01957) RecName: Full=Cysteine proteinase 1; EC=3.4.22... 41 0.015
DQ363667_1(DQ363667|pid:none) Streblomastix strix cathepsin B (c... 40 0.025
EF134218_1(EF134218|pid:none) Noctiluca scintillans isolate Nsc-... 40 0.025
AJ583512_1(AJ583512|pid:none) Diabrotica virgifera virgifera mRN... 40 0.033
AF228732_1(AF228732|pid:none) Stylonychia lemnae cathepsin L gen... 40 0.033
(A0E358) RecName: Full=Cathepsin L 2; EC=3.4.22.15; Fla... 40 0.033
EF068256_1(EF068256|pid:none) Spodoptera exigua cathepsin L-like... 39 0.057
AF036252_1(AF036252|pid:none) Theileria cervi cysteine protease ... 39 0.057
EU287916_1(EU287916|pid:none) Fasciola hepatica cathepsin L4 (CL... 38 0.097
(Q06964) RecName: Full=Cysteine proteinase 3; EC=3.4.22... 38 0.097
B23705(B23705)cysteine proteinase (EC 3.4.22.-) - Entamoeba hist... 38 0.097
AB325934_1(AB325934|pid:none) Sorogena stoianovitchae agf1 mRNA ... 38 0.097
(P60994) RecName: Full=Ervatamin-B; Short=ERV-B; ... 38 0.097
AF544844_1(AF544844|pid:none) Callosobruchus maculatus putative ... 38 0.13
FJ349098_1(FJ349098|pid:none) Acanthodendrilla sp. Vietnam cathe... 38 0.13
DQ356053_1(DQ356053|pid:none) Tenebrio molitor clone AM3-32 puta... 38 0.13
AF217446_1(AF217446|pid:none) Babesia equi cysteine protease Cys... 38 0.13
D90407_1(D90407|pid:none) Oryza sativa Japonica Group mRNA for o... 38 0.13
DQ028776_1(DQ028776|pid:none) Vigna unguiculata papain family cy... 38 0.13
DQ016553_1(DQ016553|pid:none) Paragonimus westermani cysteine pr... 38 0.13
DQ356054_1(DQ356054|pid:none) Tenebrio molitor clone AM4-22 puta... 38 0.13
AE013599_1894(AE013599|pid:none) Drosophila melanogaster chromos... 37 0.17
(Q95029) RecName: Full=Cathepsin L; EC=3.4.22.15; AltNa... 37 0.17
AP008210_2224(AP008210|pid:none) Oryza sativa (japonica cultivar... 37 0.17
AJ872184_1(AJ872184|pid:none) Lubomirskia baicalensis mRNA for c... 37 0.17
EF567025_1(EF567025|pid:none) Globodera pallida isolate Ca_GPS1 ... 37 0.22
EF567020_1(EF567020|pid:none) Globodera pallida isolate Ca_GPE1 ... 37 0.22
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like... 37 0.22
DQ667143_1(DQ667143|pid:none) Diaprepes abbreviatus cathepsin L ... 37 0.22
AY208824_1(AY208824|pid:none) Rhipicephalus appendiculatus midgu... 37 0.22
AF134153_1(AF134153|pid:none) Hordeum vulgare cysteine protease ... 37 0.22
EF567044_1(EF567044|pid:none) Globodera tabacum 'azteca' isolate... 37 0.22
L33772_1(L33772|pid:none) Fasciola hepatica cathepsin L-like pro... 37 0.22
AY526905_1(AY526905|pid:none) Pelargonium x hortorum cysteine pr... 37 0.22
EF490928_1(EF490928|pid:none) Lepeophtheirus salmonis clone LS01... 37 0.22
EF567037_1(EF567037|pid:none) Globodera rostochiensis isolate Ca... 37 0.22
EF567046_1(EF567046|pid:none) Globodera mexicana isolate Ca_GM2 ... 37 0.22
EF567043_1(EF567043|pid:none) Globodera tabacum virginiae isolat... 37 0.22
EF567040_1(EF567040|pid:none) Globodera rostochiensis isolate Ca... 37 0.22
EF567030_1(EF567030|pid:none) Globodera pallida isolate Ca_GPS6 ... 37 0.22
EF567021_1(EF567021|pid:none) Globodera pallida isolate Ca_GPE2 ... 37 0.22
EF567038_1(EF567038|pid:none) Globodera rostochiensis isolate Ca... 37 0.22
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like... 37 0.22
EF567029_1(EF567029|pid:none) Globodera pallida isolate Ca_GPS5 ... 37 0.22
EF567045_1(EF567045|pid:none) Globodera mexicana isolate Ca_GM1 ... 37 0.22
EF567032_1(EF567032|pid:none) Globodera pallida isolate Ca_GPS8 ... 37 0.22
AB248081_1(AB248081|pid:none) Triticum aestivum RDCP mRNA for RD... 37 0.28
D31970_1(D31970|pid:none) Fruitfly DNA for cysteine proteinase-1... 37 0.28
AY373973_1(AY373973|pid:none) Helicoverpa armigera cathepsin L-l... 37 0.28
X91644_1(X91644|pid:none) E.histolytica DNA encoding for cystein... 37 0.28
DQ899178_1(DQ899178|pid:none) Entamoeba histolytica isolate BAN1... 37 0.28
S67481(S67481)cathepsin L-like cysteine proteinase (EC 3.4.22.-)... 37 0.28
AF462189_1(AF462189|pid:none) Sarcoptes scabiei type hominis cat... 36 0.37
AB369066_1(AB369066|pid:none) Triticum aestivum mRNA for tritica... 36 0.37
EU287917_1(EU287917|pid:none) Fasciola hepatica cathepsin L4 (CL... 36 0.37
D21124_1(D21124|pid:none) Paragonimus westermani mRNA for neutra... 36 0.37
AY528231_1(AY528231|pid:none) Leptinotarsa decemlineata clone In... 36 0.37
D14058_1(D14058|pid:none) Ananas comosus mRNA for bromelain, com... 36 0.48
D38533_1(D38533|pid:none) Ananas comosus mRNA for FB22 precursor... 36 0.48
D14057_1(D14057|pid:none) Ananas comosus mRNA for bromelain, com... 36 0.48
(P43297) RecName: Full=Cysteine proteinase RD21a; Short... 36 0.48
AY039606_1(AY039606|pid:none) Arabidopsis thaliana F2G19.31/F2G1... 36 0.48
U56958_1(U56958|pid:none) Paragonimus westermani cysteine protei... 35 0.63
FJ763762_1(FJ763762|pid:none) Delia coarctata cathepsin L-like c... 35 0.63
DQ016547_1(DQ016547|pid:none) Paragonimus westermani cysteine pr... 35 0.63
S41428(S41428) cysteine proteinase (EC 3.4.22.-) CP2 precursor -... 35 0.63
BT080951_1(BT080951|pid:none) Caligus clemensi clone ccle-evs-50... 35 0.63
DQ016552_1(DQ016552|pid:none) Paragonimus westermani cysteine pr... 35 0.63
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ... 35 0.82
AB098627_1(AB098627|pid:none) Daucus carota DcCysP4 mRNA for cys... 35 0.82
BT047054_1(BT047054|pid:none) Salmo salar clone ssal-evf-540-233... 35 0.82
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p... 35 0.82
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ... 35 0.82
T08845(T08845) cysteine proteinase (EC 3.4.22.-) isoform A - soy... 35 0.82
EF567049_1(EF567049|pid:none) Heterodera avenae isolate Ca_Ha ca... 35 1.1
EF567052_1(EF567052|pid:none) Heterodera glycines isolate Ca_HG_... 35 1.1
EU964674_1(EU964674|pid:none) Zea mays clone 280773 unknown mRNA. 35 1.1
AF239265_1(AF239265|pid:none) Fasciola gigantica cathepsin L (ca... 35 1.1
FB844666_1(FB844666|pid:none) Sequence 63939 from Patent WO20080... 35 1.1
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li... 35 1.1
BT051805_1(BT051805|pid:none) Medicago truncatula clone MTYF5_F6... 35 1.1
DQ459303_1(DQ459303|pid:none) Aedes aegypti cathepsin L (CAT-L1)... 35 1.1
EF567051_1(EF567051|pid:none) Heterodera glycines isolate Ca_HG_... 35 1.1
(P04988) RecName: Full=Cysteine proteinase 1; EC=3.4.22... 34 1.4
EU835858_1(EU835858|pid:none) Fasciola hepatica clone 21e10 cath... 34 1.4
CR940352_253(CR940352|pid:none) Theileria annulata strain Ankara... 34 1.4
AJ279093_1(AJ279093|pid:none) Fasciola hepatica partial mRNA for... 34 1.4
AC135160_1(AC135160|pid:none) Medicago truncatula clone mth2-20m... 34 1.4
BT074879_1(BT074879|pid:none) Osmerus mordax clone omor-eva-504-... 34 1.4
AF410883_1(AF410883|pid:none) Frankliniella occidentalis cystein... 34 1.4
EF066525_1(EF066525|pid:none) Radix peregra cathepsin-L-like cys... 34 1.4
EU835857_1(EU835857|pid:none) Fasciola hepatica clone 22e06 cath... 34 1.4
AJ004958_1(AJ004958|pid:none) Pisum sativum mRNA for TPE4A thiol... 34 1.8
AY156068_1(AY156068|pid:none) Entamoeba histolytica cysteine pro... 34 1.8
S49166(S49166)cysteine proteinase (EC 3.4.22.-) precursor - spri... 34 1.8
CS491404_1(CS491404|pid:none) Sequence 7 from Patent WO2007008070. 34 1.8
S57426(S57426) cysteine proteinase (EC 3.4.22.-) 5 - Tritrichomo... 34 1.8
BT083851_1(BT083851|pid:none) Zea mays full-length cDNA clone ZM... 34 1.8
D38534_1(D38534|pid:none) Ananas comosus mRNA for FB1035 precurs... 34 1.8
AJ508393_1(AJ508393|pid:none) Tetrahymena thermophila macronucle... 34 1.8
Z34895_1(Z34895|pid:none) V.sativa L. (PROT A) mRNA for cysteine... 34 1.8
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae... 34 1.8
X91642_1(X91642|pid:none) E.histolytica DNA encoding for cystein... 34 1.8
AY533166_1(AY533166|pid:none) Brugia malayi cathepsin L-like cys... 34 1.8
U33215_1(U33215|pid:none) Paragonimus westermani cysteine protei... 34 1.8
EU659123_1(EU659123|pid:none) Bursaphelenchus xylophilus catheps... 34 1.8
EU966324_1(EU966324|pid:none) Zea mays clone 293605 cysteine pro... 34 1.8
CQ840838_1(CQ840838|pid:none) Sequence 8 from Patent WO200405881... 33 2.4
AY519971_1(AY519971|pid:none) Fasciola hepatica clone Porto 1 ca... 33 2.4
CQ840832_1(CQ840832|pid:none) Sequence 2 from Patent WO200405881... 33 2.4
(Q24940) RecName: Full=Cathepsin L-like proteinase; EC=... 33 2.4
AJ009830_1(AJ009830|pid:none) Ananas comosus mRNA for stem cyste... 33 2.4
KHBH(A25492;B25492)aleurain (EC 3.4.22.-) precursor - barley 33 2.4
T12382(T12382) cysteine proteinase (EC 3.4.22.-) - common ice pl... 33 2.4
EU025855_1(EU025855|pid:none) Dermacentor variabilis cathepsin L... 33 2.4
CQ840836_1(CQ840836|pid:none) Sequence 6 from Patent WO200405881... 33 2.4
AY519972_1(AY519972|pid:none) Fasciola hepatica clone INSA 2 cat... 33 2.4
AY277628_1(AY277628|pid:none) Fasciola hepatica cathepsin L mRNA... 33 2.4
AF542132_1(AF542132|pid:none) Theromyzon tessulatum cathepsin L ... 33 3.1
AY573569_1(AY573569|pid:none) Fasciola hepatica strain Firat cat... 33 3.1
JX0366(JX0366;S13208) cysteine endopeptidase (EC 3.4.22.-) precu... 33 3.1
EF213115_1(EF213115|pid:none) Penaeus monodon cathepsin L mRNA, ... 33 3.1
AY428949_1(AY428949|pid:none) Fasciola gigantica cathepsin L (ca... 33 3.1
BT073939_1(BT073939|pid:none) Oncorhynchus mykiss clone omyk-evo... 33 3.1
EF611824_1(EF611824|pid:none) Fasciola hepatica secreted catheps... 33 3.1
DQ533985_1(DQ533985|pid:none) Fasciola hepatica cathepsin L2 mRN... 33 3.1
S47432(S47432;A48398) cathepsin L (EC 3.4.22.15) - Norway lobste... 33 3.1
Z22764_1(Z22764|pid:none) F.hepatica cathepsin L-like protease m... 33 3.1
AJ249847_1(AJ249847|pid:none) Lolium multiflorum mRNA for cystei... 33 3.1
DQ016548_1(DQ016548|pid:none) Paragonimus westermani cysteine pr... 33 4.1
AB010924_1(AB010924|pid:none) Fasciola gigantica FhCL(B7-3) gene... 33 4.1
AF544837_1(AF544837|pid:none) Callosobruchus maculatus putative ... 33 4.1
EF070511_1(EF070511|pid:none) Maconellicoccus hirsutus clone WHM... 33 4.1
X66014_1(X66014|pid:none) T.aestivum mRNA 2 for cathepsin B (207... 33 4.1
AB236968_1(AB236968|pid:none) Carassius auratus mRNA for catheps... 33 4.1
(P80884) RecName: Full=Ananain; EC=3.4.22.31; Flags: Pr... 33 4.1
AF410881_1(AF410881|pid:none) Frankliniella occidentalis cystein... 33 4.1
AF544839_1(AF544839|pid:none) Callosobruchus maculatus putative ... 33 4.1
FJ467290_1(FJ467290|pid:none) Sphenophorus levis midgut cysteine... 33 4.1
(P05167) RecName: Full=Thiol protease aleurain; EC=3.4.... 33 4.1
AF544836_1(AF544836|pid:none) Callosobruchus maculatus putative ... 33 4.1
AF239266_1(AF239266|pid:none) Fasciola gigantica cathepsin L (ca... 33 4.1
AF544841_1(AF544841|pid:none) Callosobruchus maculatus putative ... 33 4.1
T06466(T06466) cathepsin B-like cysteine proteinase (EC 3.4.22.-... 33 4.1
(P83443) RecName: Full=Macrodontain-1; EC=3.4.22.-; Alt... 33 4.1
AB010923_1(AB010923|pid:none) Fasciola gigantica FhCL gene for c... 33 4.1
AF544835_1(AF544835|pid:none) Callosobruchus maculatus putative ... 33 4.1
AF544838_1(AF544838|pid:none) Callosobruchus maculatus putative ... 33 4.1
AF493233_1(AF493233|pid:none) Lycopersicon pennellii cysteine pr... 33 4.1
AF071801_1(AF071801|pid:none) Paragonimus westermani cysteine pr... 33 4.1
(O23791) RecName: Full=Fruit bromelain; EC=3.4.22.33; A... 33 4.1
(O17473) RecName: Full=Cathepsin L-like; EC=3.4.22.15; ... 33 4.1
Y14734_1(Y14734|pid:none) Homo sapiens mRNA for cathepsin L2. 32 5.3
AF121841_1(AF121841|pid:none) Metagonimus yokogawai cysteine pro... 32 5.3
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste... 32 5.3
DQ842221_1(DQ842221|pid:none) Ichthyophthirius multifiliis cathe... 32 5.3
(P25803) RecName: Full=Vignain; EC=3.4.22.-; AltName: F... 32 5.3
AB017648_1(AB017648|pid:none) Bos taurus gene for preprocathepsi... 32 5.3
(P43156) RecName: Full=Thiol protease SEN102; EC=3.4.22... 32 5.3
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae... 32 5.3
U62289_1(U62289|pid:none) Fasciola hepatica secreted cathepsin L... 32 5.3
AY208822_1(AY208822|pid:none) Rhipicephalus appendiculatus midgu... 32 5.3
AF419329_1(AF419329|pid:none) Fasciola gigantica cathepsin L mRN... 32 5.3
(P25975) RecName: Full=Cathepsin L1; EC=3.4.22.15; Cont... 32 5.3
AB248269_1(AB248269|pid:none) Echinococcus multilocularis EmCLP1... 32 5.3
AK312806_1(AK312806|pid:none) Homo sapiens cDNA, FLJ93235, highl... 32 5.3
(P25784) RecName: Full=Digestive cysteine proteinase 3; ... 32 5.3
X74359_1(X74359|pid:none) A.thaliana mRNA for putative thiol pro... 32 5.3
S22502(S22502;S77955;S16251)cysteine proteinase (EC 3.4.22.-) - ... 32 5.3
AB331915_1(AB331915|pid:none) Brassica oleracea var. italica BoC... 32 5.3
AY223542_1(AY223542|pid:none) Fundulus heteroclitus cathepsin K ... 32 5.3
BT045723_1(BT045723|pid:none) Salmo salar clone ssal-rgf-529-273... 32 5.3
AJ583508_1(AJ583508|pid:none) Diabrotica virgifera virgifera mRN... 32 6.9
(Q5E998) RecName: Full=Cathepsin L2; EC=3.4.22.43; Flag... 32 6.9
(P25776) RecName: Full=Oryzain alpha chain; EC=3.4.22.-... 32 6.9
AL606692_8(AL606692|pid:none) Oryza sativa genomic DNA, chromoso... 32 6.9
JC4848(JC4848) cysteine proteinase (EC 3.4.22.-) - Douglas fir ... 32 9.1
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 32 9.1
AB009306_1(AB009306|pid:none) Fasciola hepatica mRNA for catheps... 32 9.1
AF239264_1(AF239264|pid:none) Fasciola gigantica cathepsin L (ca... 32 9.1
AF331035_1(AF331035|pid:none) Brugia malayi cathepsin L-like cys... 32 9.1
EF084924_1(EF084924|pid:none) Picea sitchensis clone WS02718_H19... 32 9.1
EF536899_1(EF536899|pid:none) Fasciola gigantica cathepsin (cat-... 32 9.1
FB844650_1(FB844650|pid:none) Sequence 63923 from Patent WO20080... 32 9.1
JC7787(JC7787)carrot seed cysteine proteinase (EC 3.4.-.-), CSCP... 32 9.1
DQ459304_1(DQ459304|pid:none) Aedes aegypti cathepsin L (CAT-L2)... 32 9.1
BC090560_1(BC090560|pid:none) Xenopus tropicalis hypothetical pr... 32 9.1
BC135767_1(BC135767|pid:none) Xenopus tropicalis hypothetical pr... 32 9.1
AF510856_1(AF510856|pid:none) Fasciola gigantica cathepsin L2 mR... 32 9.1
AF239267_1(AF239267|pid:none) Fasciola gigantica cathepsin L (ca... 32 9.1
EF474111_1(EF474111|pid:none) Monocercomonoides sp. PA cathepsin... 32 9.1
(P82474) RecName: Full=Zingipain-2; EC=3.4.22.67; AltNa... 32 9.1

>AB088483_1(AB088483|pid:none) Dictyostelium discoideum gmsA gene
for gamete and mating-type specific protein A, complete
cds.
Length = 448

Score = 112 bits (280), Expect = 4e-24
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = +1

Query: 1 TAQKSTLQLSNQNAVNCIASGCNGGWSGNYFNFFKTPGIAYEKDDPYKAVT 153
TAQKSTLQLSNQNAVNCIASGCNGGWSGNYFNFFKTPGIAYEKDDPYKAVT
Sbjct: 281 TAQKSTLQLSNQNAVNCIASGCNGGWSGNYFNFFKTPGIAYEKDDPYKAVT 331

Lambda K H
0.314 0.130 0.408

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 209,710,772
Number of extensions: 3325704
Number of successful extensions: 6291
Number of sequences better than 10.0: 194
Number of HSP's gapped: 6162
Number of HSP's successfully gapped: 194
Length of query: 51
Length of database: 1,040,966,779
Length adjustment: 24
Effective length of query: 27
Effective length of database: 964,063,939
Effective search space: 26029726353
Effective search space used: 26029726353
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 25 (14.2 bits)

PSORT

psg: 0.84 gvh: 0.44 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
24.0 %: cytoplasmic
16.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U08360-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 2
FC-IC (SUB) 2