Contig-U08355-1
Contig ID Contig-U08355-1
Contig update 2002. 9.13
Contig sequence
>Contig-U08355-1 (Contig-U08355-1Q) /CSM_Contig/Contig-U08355-1Q.Seq.d
ACTTGTAATAACCAAACTGGTCTATGTGTATGTGATTCAACTCATCAAGG
CTATTAGTTGCAACAATCCATTAATACCTTGTTTAAATATATTGTTCAGG
ACAATATTGTGATACCTATCAAGGTATATGTTATTGTGATTATGATCACC
AAGGTGAAGATTGTTCAAAAGATTTTAAAGAATGTCCAGTATTTAATGAT
TATTATTGTAATGACAAGGGTGAATGTGATTTTGAAACTGGTATTTGTAG
TTGTTTCTCAAATTCAAGCTTTACAGGACCAGCTTGTTCAATTGCAGATC
ATTATATTTCATCAGTTATTCCATCATTTGAAGAAGGTGGTGATGCAATT
TTTAATGGTTGGTTTGGTGATGAACATATAAATTTAACTTTAACAATTGG
TGATAAACAATG

Gap no gap
Contig length 412
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2347662
End point 2348074
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 1
Link to clone list U08355
List of clone(s)

est1=FC-IC0597E,1,413
Translated Amino Acid sequence
l**pnwsmcm*fnssrllvatih*ylv*IYCSGQYCDTYQGICYCDYDHQGEDCSKDFKE
CPVFNDYYCNDKGECDFETGICSCFSNSSFTGPACSIADHYISSVIPSFEEGGDAIFNGW
FGDEHINLTLTIGDKQ


Translated Amino Acid sequence (All Frames)
Frame A:
tcnnqtglcvcdsthqgy*lqqsintlfkyivqdnivipikvyvivimitkvkivqkilk
nvqylmiiivmtrvnvilklvfvvvsqiqalqdqlvqlqiiifhqlfhhlkkvvmqflmv
glvmni*i*l*qlvinn


Frame B:
lvitklvyvyviqlikaiscnnplipclnilfrtil*ylsrymll*l*spr*rlfkrf*r
mssi**lll**qg*m*f*nwyl*lflkfklyrtslfncrslyfisysii*rrw*cnf*wl
vw**tykfnfnnw**tm


Frame C:
l**pnwsmcm*fnssrllvatih*ylv*IYCSGQYCDTYQGICYCDYDHQGEDCSKDFKE
CPVFNDYYCNDKGECDFETGICSCFSNSSFTGPACSIADHYISSVIPSFEEGGDAIFNGW
FGDEHINLTLTIGDKQ


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U08355-1 (Contig-U08355-1Q)
/CSM_Contig/Contig-U08355-1Q.Seq.d
(412 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U08355-1 (Contig-U08355-1Q) /CSM_Contig/Conti... 817 0.0
Contig-U00977-1 (Contig-U00977-1Q) /CSM_Contig/Conti... 38 0.007
Contig-U12682-1 (Contig-U12682-1Q) /CSM_Contig/Conti... 36 0.028
Contig-U12416-1 (Contig-U12416-1Q) /CSM_Contig/Conti... 36 0.028
Contig-U10149-1 (Contig-U10149-1Q) /CSM_Contig/Conti... 36 0.028
Contig-U09553-1 (Contig-U09553-1Q) /CSM_Contig/Conti... 36 0.028
Contig-U04010-1 (Contig-U04010-1Q) /CSM_Contig/Conti... 36 0.028
Contig-U14299-1 (Contig-U14299-1Q) /CSM_Contig/Conti... 34 0.11
Contig-U12490-1 (Contig-U12490-1Q) /CSM_Contig/Conti... 34 0.11
Contig-U12323-1 (Contig-U12323-1Q) /CSM_Contig/Conti... 34 0.11

>Contig-U08355-1 (Contig-U08355-1Q) /CSM_Contig/Contig-U08355-1Q.Seq.d
Length = 412

Score = 817 bits (412), Expect = 0.0
Identities = 412/412 (100%)
Strand = Plus / Plus


Query: 1 acttgtaataaccaaactggtctatgtgtatgtgattcaactcatcaaggctattagttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttgtaataaccaaactggtctatgtgtatgtgattcaactcatcaaggctattagttg 60


Query: 61 caacaatccattaataccttgtttaaatatattgttcaggacaatattgtgatacctatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caacaatccattaataccttgtttaaatatattgttcaggacaatattgtgatacctatc 120


Query: 121 aaggtatatgttattgtgattatgatcaccaaggtgaagattgttcaaaagattttaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaggtatatgttattgtgattatgatcaccaaggtgaagattgttcaaaagattttaaag 180


Query: 181 aatgtccagtatttaatgattattattgtaatgacaagggtgaatgtgattttgaaactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatgtccagtatttaatgattattattgtaatgacaagggtgaatgtgattttgaaactg 240


Query: 241 gtatttgtagttgtttctcaaattcaagctttacaggaccagcttgttcaattgcagatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtatttgtagttgtttctcaaattcaagctttacaggaccagcttgttcaattgcagatc 300


Query: 301 attatatttcatcagttattccatcatttgaagaaggtggtgatgcaatttttaatggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attatatttcatcagttattccatcatttgaagaaggtggtgatgcaatttttaatggtt 360


Query: 361 ggtttggtgatgaacatataaatttaactttaacaattggtgataaacaatg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ggtttggtgatgaacatataaatttaactttaacaattggtgataaacaatg 412


>Contig-U00977-1 (Contig-U00977-1Q) /CSM_Contig/Contig-U00977-1Q.Seq.d
Length = 1373

Score = 38.2 bits (19), Expect = 0.007
Identities = 22/23 (95%)
Strand = Plus / Minus


Query: 350 ttttaatggttggtttggtgatg 372
|||||||||||| ||||||||||
Sbjct: 1281 ttttaatggttgatttggtgatg 1259


>Contig-U12682-1 (Contig-U12682-1Q) /CSM_Contig/Contig-U12682-1Q.Seq.d
Length = 1408

Score = 36.2 bits (18), Expect = 0.028
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 395 aattggtgataaacaatg 412
||||||||||||||||||
Sbjct: 1086 aattggtgataaacaatg 1103


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6963
Number of Sequences: 6905
Number of extensions: 6963
Number of successful extensions: 747
Number of sequences better than 10.0: 244
length of query: 412
length of database: 5,674,871
effective HSP length: 16
effective length of query: 396
effective length of database: 5,564,391
effective search space: 2203498836
effective search space used: 2203498836
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.13
Homology vs DNA
Query= Contig-U08355-1 (Contig-U08355-1Q) /CSM_Contig/Contig-U08355-1Q.Seq.d
(412 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU271727) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 626 0.0 3
(AU271728) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 718 0.0 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 44 0.26 5
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 42 0.28 5
(AC220680) Bos taurus clone CH240-349J3, WORKING DRAFT SEQUE... 40 0.46 4
(AC116967) Dictyostelium discoideum chromosome 2 map 5481549... 36 0.48 3
(AC189432) Brassica rapa subsp. pekinensis clone KBrB068E07,... 46 0.97 1
(CT764692) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 3.4 3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 34 3.6 6
(CU459048) S.lycopersicum DNA sequence from clone LE_HBa-2G1... 44 3.8 1
(AR838058) Sequence 16 from patent US 7033799. 44 3.8 1
(AR451832) Sequence 16 from patent US 6676948. 44 3.8 1
(AL109759) Human chromosome 14 DNA sequence BAC R-898B23 of ... 44 3.8 1
(AC109441) Homo sapiens chromosome 5 clone CTC-269P20, compl... 44 3.8 1
(AC008473) Homo sapiens chromosome 5 clone CTC-375J15, compl... 44 3.8 1
(AC176573) Strongylocentrotus purpuratus clone R3-3077D06, W... 44 3.8 1
(DU843973) 28491 Tomato HindIII BAC Library Solanum lycopers... 44 3.8 1
(EG698013) RCSA751TP Castor bean cDNA library from seeds (12... 44 3.8 1
(EG678991) RCRDV57TP Castor bean cDNA library from roots, 1.... 44 3.8 1
(DN564738) 90860598 Sea Urchin primary mesenchyme cell cDNA ... 44 3.8 1
(DC230761) Plasmodium berghei strain ANKA cDNA clone:SG01969... 44 3.8 1
(DC220138) Plasmodium berghei strain ANKA cDNA clone:MZ00213... 44 3.8 1
(CD313617) StrPu621.003981 Sea urchin unfertilised egg cDNA ... 44 3.8 1
(AE013031) Thermoanaerobacter tengcongensis MB4, section 58 ... 44 3.8 1
(AC132121) Mus musculus BAC clone RP24-62L21 from 13, comple... 40 3.8 2
(CU463239) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 4.0 4
(EJ350368) 1092963581824 Global-Ocean-Sampling_GS-28-01-01-1... 36 4.2 2
(BH919939) maj96g10.g1 B.oleracea002 Brassica oleracea genom... 38 4.2 2
(CW187532) 104_605_11167142_148_36719_049 Sorghum methylatio... 40 4.6 2
(EJ342573) 1092963526315 Global-Ocean-Sampling_GS-28-01-01-1... 36 6.0 2
(AM467060) Vitis vinifera contig VV78X237405.4, whole genome... 38 6.6 2
(AC104831) Homo sapiens 3 BAC RP11-451G4 (Roswell Park Cance... 36 8.4 2

>(AU271727) Dictyostelium discoideum gamete cDNA clone:FC-IC0597, 5'
end single read.
Length = 411

Score = 626 bits (316), Expect(3) = 0.0
Identities = 320/322 (99%)
Strand = Plus / Plus


Query: 91 attgttcaggacaatattgtgatacctatcaaggtatatgttattgtgattatgatcacc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 attgttcaggacaatattgtgatacctatcaaggtatatgttattgtgattatgatcacc 148


Query: 151 aaggtgaagattgttcaaaagattttaaagaatgtccagtatttaatgattattattgta 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aaggtgaagattgttcaaaagattttaaagaatgtccagtatttaatgattattattgta 208


Query: 211 atgacaagggtgaatgtgattttgaaactggtatttgtagttgtttctcaaattcaagct 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 atgacaagggtgaatgtgattttgaaactggtatttgtagttgtttctcaaattcaagct 268


Query: 271 ttacaggaccagcttgttcaattgcagatcattatatttcatcagttattccatcatttg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttacaggaccagcttgttcaattgcagatcattatatttcatcagttattccatcatttg 328


Query: 331 aagaaggtggtgatgcaatttttaatggttggtttggtgatgaacatataaatttaactt 390
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 329 aagaaggtggtgatgcaatttttaatggttggtttngtgatgaacatataaatttaactt 388


Query: 391 taacaattggtgataaacaatg 412
|||||||||||||| |||||||
Sbjct: 389 taacaattggtgatnaacaatg 410

Score = 111 bits (56), Expect(3) = 0.0
Identities = 56/56 (100%)
Strand = Plus / Plus


Query: 1 acttgtaataaccaaactggtctatgtgtatgtgattcaactcatcaaggctatta 56
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acttgtaataaccaaactggtctatgtgtatgtgattcaactcatcaaggctatta 56

Score = 63.9 bits (32), Expect(3) = 0.0
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 58 ttgcaacaatccattaataccttgtttaaata 89
||||||||||||||||||||||||||||||||
Sbjct: 57 ttgcaacaatccattaataccttgtttaaata 88

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 518,980,746
Number of extensions: 31049877
Number of successful extensions: 2582281
Number of sequences better than 10.0: 36
Length of query: 412
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 389
Effective length of database: 93,106,754,628
Effective search space: 36218527550292
Effective search space used: 36218527550292
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U08355-1 (Contig-U08355-1Q) /CSM_Contig/Contig-U08355-1Q.Seq.d
(412 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso... 95 7e-24
AC116920_24(AC116920|pid:none) Dictyostelium discoideum chromoso... 96 7e-23
AC116967_8(AC116967|pid:none) Dictyostelium discoideum chromosom... 91 1e-22
AC116967_7(AC116967|pid:none) Dictyostelium discoideum chromosom... 102 5e-21
AC116920_25(AC116920|pid:none) Dictyostelium discoideum chromoso... 93 3e-20
AC117081_39(AC117081|pid:none) Dictyostelium discoideum chromoso... 92 4e-20
AC116963_42(AC116963|pid:none) Dictyostelium discoideum chromoso... 87 6e-19
AC117081_43(AC117081|pid:none) Dictyostelium discoideum chromoso... 86 5e-16
AC116956_34(AC116956|pid:none) Dictyostelium discoideum chromoso... 72 1e-15
AC116960_61(AC116960|pid:none) Dictyostelium discoideum chromoso... 74 8e-13
AC116982_41(AC116982|pid:none) Dictyostelium discoideum chromoso... 56 4e-07
AF154501_1(AF154501|pid:none) Thalassiosira weissflogii sexually... 47 2e-05
AM231718_1(AM231718|pid:none) Gallus gallus mRNA for tenascin-W ... 50 3e-05
A49175(A49175;PH1570;S32113) Motch B protein - mouse (fragment) ... 48 1e-04
AB174356_1(AB174356|pid:none) Macaca fascicularis brain cDNA clo... 48 1e-04
BC172642_1(BC172642|pid:none) Synthetic construct Mus musculus c... 48 1e-04
(Q04721) RecName: Full=Neurogenic locus notch homolog protein 2;... 48 1e-04
AF308601_1(AF308601|pid:none) Homo sapiens NOTCH 2 (N2) mRNA, co... 48 1e-04
AX357059_1(AX357059|pid:none) Sequence 21 from Patent EP1175909.... 48 1e-04
BC143738_1(BC143738|pid:none) Homo sapiens integrin, beta 4, mRN... 47 2e-04
(P16144) RecName: Full=Integrin beta-4; AltName: Full=GP150; Alt... 47 2e-04
A36429(S12380;S08465;A36429;S06963;B33534)integrin beta-4 chain ... 47 2e-04
AF011375_1(AF011375|pid:none) Homo sapiens integrin variant beta... 47 2e-04
BC126411_1(BC126411|pid:none) Homo sapiens integrin, beta 4, mRN... 47 2e-04
AK304792_1(AK304792|pid:none) Homo sapiens cDNA FLJ60224 complet... 47 2e-04
U66541_2(U66541|pid:none) Human beta4-integrin (ITGB4) and alter... 47 2e-04
BC118916_1(BC118916|pid:none) Homo sapiens integrin, beta 4, mRN... 47 2e-04
AF224337_1(AF224337|pid:none) Ictalurus punctatus beta-1 integri... 47 2e-04
X52186_1(X52186|pid:none) Human mRNA for integrin beta-4 subunit. 47 2e-04
X53587_1(X53587|pid:none) Human mRNA for integrin beta 4. 47 2e-04
BC109238_1(BC109238|pid:none) Homo sapiens integrin, beta 4, mRN... 47 2e-04
DQ900934_1(DQ900934|pid:none) Ciona intestinalis gamma-carboxygl... 45 2e-04
AC117075_41(AC117075|pid:none) Dictyostelium discoideum chromoso... 46 5e-04
BT072644_1(BT072644|pid:none) Salmo salar clone ssal-rgf-534-220... 45 8e-04
(Q9GLP0) RecName: Full=Integrin beta-1; AltName: Full=Fibronecti... 45 8e-04
Y12539_1(Y12539|pid:none) Branchiostoma floridae mRNA for putati... 45 0.001
(Q80YX1) RecName: Full=Tenascin; Short=TN; AltName: Ful... 44 0.001
AL732556_3(AL732556|pid:none) Mouse DNA sequence from clone RP24... 44 0.001
AL732556_1(AL732556|pid:none) Mouse DNA sequence from clone RP24... 44 0.001
BX004856_1(BX004856|pid:none) Zebrafish DNA sequence from clone ... 44 0.002
AC116100_9(AC116100|pid:none) Dictyostelium discoideum chromosom... 44 0.002
DQ149103_1(DQ149103|pid:none) Danio rerio integrin beta1 subunit... 44 0.002
AB010266_2(AB010266|pid:none) Mus musculus Creb-rp, Tnx, Cyp21 g... 42 0.002
(B0FYY4) RecName: Full=Integrin beta-1; AltName: Full=Integrin s... 44 0.002
(P12606) RecName: Full=Integrin beta-1-A; Flags: Precursor; &A2... 44 0.002
AJ580920_1(AJ580920|pid:none) Mus musculus mRNA for tenascin-W p... 44 0.002
BC114107_1(BC114107|pid:none) Bos taurus integrin beta 1, mRNA (... 44 0.002
(Q80Z71) RecName: Full=Tenascin-N; Short=TN-N; Flags: P... 44 0.002
BC138335_1(BC138335|pid:none) Mus musculus tenascin N, mRNA (cDN... 44 0.002
AL607108_2(AL607108|pid:none) Mouse DNA sequence from clone RP23... 43 0.003
(Q64632) RecName: Full=Integrin beta-4; AltName: Full=GP150; Alt... 43 0.003
AL607108_4(AL607108|pid:none) Mouse DNA sequence from clone RP23... 43 0.003
JN0786(JN0786)integrin beta-4 chain precursor - mouse 43 0.003
AB266841_1(AB266841|pid:none) Equus caballus itgb1 mRNA for beta... 43 0.004
AB001074_1(AB001074|pid:none) Caenorhabditis elegans mRNA for la... 43 0.004
AJ536344_1(AJ536344|pid:none) Archispirostreptus sp. HD-2003 par... 43 0.004
Z70286_4(Z70286|pid:none) Caenorhabditis elegans Cosmid K08C7, c... 43 0.004
X08030_1(X08030|pid:none) Chicken mRNA fragment for tenascin (cT... 43 0.004
(Q21313) RecName: Full=Laminin-like protein epi-1; Flags: Precur... 43 0.004
(Q8I7T3) RecName: Full=Substrate-adhesion molecule; Flags: Precu... 43 0.004
(P49134) RecName: Full=Integrin beta-1; AltName: Full=Fibronecti... 42 0.005
CP001323_444(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 42 0.005
AJ437480_3(AJ437480|pid:none) Paramecium tetraurelia partial npe... 42 0.005
AL627123_1(AL627123|pid:none) Mouse DNA sequence from clone RP23... 42 0.007
(Q80V70) RecName: Full=Multiple epidermal growth factor-like dom... 42 0.007
X15202_1(X15202|pid:none) Mouse mRNA for fibronectin receptor be... 42 0.007
AL110498_8(AL110498|pid:none) Caenorhabditis elegans YAC Y64G10A... 42 0.007
BC067552_1(BC067552|pid:none) Danio rerio integrin, beta 1b.2, m... 42 0.007
AK134303_1(AK134303|pid:none) Mus musculus 13 days embryo male t... 42 0.007
DQ440587_1(DQ440587|pid:none) Danio rerio truncated integrin bet... 42 0.007
(P09055) RecName: Full=Integrin beta-1; AltName: Full=Fibronecti... 42 0.007
AK088729_1(AK088729|pid:none) Mus musculus 2 days neonate thymus... 42 0.007
DQ440590_1(DQ440590|pid:none) Danio rerio clone IMAGE:7001749 be... 42 0.007
AK159689_1(AK159689|pid:none) Mus musculus osteoclast-like cell ... 42 0.007
AJ566620_1(AJ566620|pid:none) Paramecium tetraurelia macronuclea... 42 0.007
AK173032_1(AK173032|pid:none) Mus musculus mRNA for mKIAA0815 pr... 42 0.007
BC058571_1(BC058571|pid:none) Mus musculus multiple EGF-like-dom... 42 0.007
DQ440589_1(DQ440589|pid:none) Danio rerio truncated integrin bet... 42 0.007
(Q14622) RecName: Full=Integrin beta-1; AltName: Full=Fibronecti... 42 0.009
CR954216_234(CR954216|pid:none) Ostreococcus tauri strain OTTH05... 42 0.009
(P07228) RecName: Full=Integrin beta-1; AltName: Full=CSAT antig... 42 0.009
B27079(B27079) fibronectin receptor beta chain precursor - human... 42 0.009
BX537407_1(BX537407|pid:none) Homo sapiens mRNA; cDNA DKFZp686D0... 42 0.009
U00046_2(U00046|pid:none) Caenorhabditis elegans cosmid R13F6, c... 41 0.011
AB206835_1(AB206835|pid:none) Caenorhabditis elegans ten-1 mRNA ... 41 0.011
AB470974_1(AB470974|pid:none) Ochromonas danica Ocm4 mRNA for tu... 41 0.011
T16743(T16743)hypothetical protein R13F6.4 - Caenorhabditis eleg... 41 0.011
EU596506_1(EU596506|pid:none) Rattus norvegicus tenascin C (Tnc)... 41 0.011
U00046_1(U00046|pid:none) Caenorhabditis elegans cosmid R13F6, c... 41 0.011
I46059(I46059) beta-1 integrin subunit - bovine (fragment) &U10... 41 0.015
AE014298_1834(AE014298|pid:none) Drosophila melanogaster chromos... 41 0.015
BC146386_1(BC146386|pid:none) Synthetic construct Homo sapiens c... 41 0.015
(O75095) RecName: Full=Multiple epidermal growth factor-like dom... 41 0.015
AF315556_1(AF315556|pid:none) Caenorhabditis remanei notch-like ... 41 0.015
BC144305_1(BC144305|pid:none) Homo sapiens cDNA clone MGC:177842... 41 0.015
AJ507288_1(AJ507288|pid:none) Cupiennius salei partial mRNA for ... 41 0.015
X68794_1(X68794|pid:none) Drosophila melanogaster mRNA for type ... 41 0.015
AB066348_1(AB066348|pid:none) Crassostrea gigas IBCGH mRNA for i... 41 0.015
AB011539_1(AB011539|pid:none) Homo sapiens mRNA for MEGF6 protei... 41 0.015
AK127044_1(AK127044|pid:none) Homo sapiens cDNA FLJ45101 fis, cl... 41 0.015
EU685294_1(EU685294|pid:none) Branchiostoma lanceolatum notch re... 41 0.015
AL049689_1(AL049689|pid:none) Novel human mRNA from chromosome 1... 41 0.015
(Q9UQP3) RecName: Full=Tenascin-N; Short=TN-N; Flags: P... 41 0.015
AK122555_1(AK122555|pid:none) Mus musculus mRNA for mKIAA1781 pr... 40 0.019
(Q80T91) RecName: Full=Multiple epidermal growth factor-like dom... 40 0.019
DQ917572_1(DQ917572|pid:none) Parhyale hawaiensis notch protein ... 40 0.019
BC071284_1(BC071284|pid:none) Danio rerio tenascin W, mRNA (cDNA... 40 0.019
(P46530) RecName: Full=Neurogenic locus notch homolog protein 1;... 40 0.019
AB210038_1(AB210038|pid:none) Homo sapiens mRNA for TNC variant ... 40 0.019
AM463622_2(AM463622|pid:none) Vitis vinifera contig VV78X244153.... 40 0.019
AF308602_1(AF308602|pid:none) Homo sapiens NOTCH 1 (N1) mRNA, co... 40 0.019
(P24821) RecName: Full=Tenascin; Short=TN; AltName: Ful... 40 0.019
(P46531) RecName: Full=Neurogenic locus notch homolog protein 1;... 40 0.019
BC151843_1(BC151843|pid:none) Homo sapiens tenascin C, mRNA (cDN... 40 0.019
AK304015_1(AK304015|pid:none) Homo sapiens cDNA FLJ60213 complet... 40 0.019
AK051642_1(AK051642|pid:none) Mus musculus 12 days embryo spinal... 40 0.019
AB058677_1(AB058677|pid:none) Homo sapiens mRNA for MEGF11 prote... 40 0.025
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 40 0.025
AB300051_1(AB300051|pid:none) Homo sapiens mRNA for MEGF11, comp... 40 0.025
CP001327_152(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 40 0.025
S18188(S18188)notch protein homolog - rat 40 0.025
FN357711_14(FN357711|pid:none) Schistosoma mansoni genome sequen... 40 0.025
AB100603_1(AB100603|pid:none) Mus musculus Notch1 gene for trans... 40 0.025
DQ177286_1(DQ177286|pid:none) Danio rerio Slit1a (slit1a) mRNA, ... 40 0.025
AB100603_2(AB100603|pid:none) Mus musculus Notch1 gene for trans... 40 0.025
BC117419_1(BC117419|pid:none) Homo sapiens multiple EGF-like-dom... 40 0.025
(Q01705) RecName: Full=Neurogenic locus notch homolog protein 1;... 40 0.025
AF508809_1(AF508809|pid:none) Mus musculus notch 1 protein mRNA,... 40 0.025
T27283(T27283)hypothetical protein Y64G10A.f - Caenorhabditis el... 40 0.025
AL834326_1(AL834326|pid:none) Homo sapiens mRNA; cDNA DKFZp434L1... 40 0.025
EU152252_1(EU152252|pid:none) Hydra vulgaris notch mRNA, complet... 40 0.033
U89335_1(U89335|pid:none) Homo sapiens chromosome 6 notch4 (NOTC... 40 0.033
BC163556_1(BC163556|pid:none) Danio rerio tenascin C, mRNA (cDNA... 40 0.033
DQ096731_1(DQ096731|pid:none) Danio rerio tenascin-C (TNC) mRNA,... 40 0.033
AK290785_1(AK290785|pid:none) Homo sapiens cDNA FLJ77085 complet... 40 0.033
CT025750_1(CT025750|pid:none) Zebrafish DNA sequence from clone ... 40 0.033
BX927239_21(BX927239|pid:none) Human DNA sequence from clone DAM... 40 0.033
AB023961_1(AB023961|pid:none) Homo sapiens NOTCH4 gene, exon 1 t... 40 0.033
AK295823_1(AK295823|pid:none) Homo sapiens cDNA FLJ60578 complet... 40 0.033
CR933878_21(CR933878|pid:none) Human DNA sequence from clone DAM... 40 0.033
AL662830_12(AL662830|pid:none) Human DNA sequence from clone XXb... 40 0.033
EU273942_1(EU273942|pid:none) Amphimedon queenslandica notch mRN... 40 0.033
AC115598_37(AC115598|pid:none) Dictyostelium discoideum chromoso... 38 0.039
DQ022377_1(DQ022377|pid:none) Danio rerio beta 4 integrin mRNA, ... 39 0.043
AL773560_5(AL773560|pid:none) Pig DNA sequence from clone PigI-5... 39 0.057
AC116984_28(AC116984|pid:none) Dictyostelium discoideum chromoso... 39 0.057
AL591496_16(AL591496|pid:none) Mouse DNA sequence from clone RP2... 39 0.057
AC004663_1(AC004663|pid:none) Homo sapiens chromosome 19, cosmid... 39 0.057
AL035436_2(AL035436|pid:none) Drosophila melanogaster cosmid clo... 39 0.057
FJ222591_1(FJ222591|pid:none) Periplaneta americana Notch protei... 39 0.057
M16152_1(M16152|pid:none) Drosophila melanogaster Notch growth f... 39 0.057
AL591496_15(AL591496|pid:none) Mouse DNA sequence from clone RP2... 39 0.057
FN357387_32(FN357387|pid:none) Schistosoma mansoni genome sequen... 39 0.074
FM209056_1(FM209056|pid:none) Homo sapiens mRNA for Eyes shut ho... 39 0.074
AC117075_64(AC117075|pid:none) Dictyostelium discoideum chromoso... 39 0.074
AB210366_1(AB210366|pid:none) Ciona intestinalis mRNA for delta-... 39 0.074
BX537264_1(BX537264|pid:none) Zebrafish DNA sequence from clone ... 39 0.074
FN357317_8(FN357317|pid:none) Schistosoma mansoni genome sequenc... 39 0.074
X56160_1(X56160|pid:none) Human mRNA for tenascin. 39 0.074
T21011(T21011)hypothetical protein F16B12.2 - Caenorhabditis ele... 39 0.074
Z81064_2(Z81064|pid:none) Caenorhabditis elegans Cosmid F16B12, ... 39 0.074
EF596889_1(EF596889|pid:none) Drosophila simulans strain simB MD... 39 0.074
AK302554_1(AK302554|pid:none) Homo sapiens cDNA FLJ51576 complet... 38 0.096
BC098806_1(BC098806|pid:none) Rattus norvegicus integrin, beta 7... 38 0.096
AX817295_1(AX817295|pid:none) Sequence 43 from Patent WO02081517. 38 0.096
(P78504) RecName: Full=Protein jagged-1; Short=Jagged1;... 38 0.096
AX817297_1(AX817297|pid:none) Sequence 45 from Patent WO02081517. 38 0.096
AK312722_1(AK312722|pid:none) Homo sapiens cDNA, FLJ93126, highl... 38 0.096
AB470973_1(AB470973|pid:none) Ochromonas danica Ocm2 mRNA for tu... 38 0.096
(P26010) RecName: Full=Integrin beta-7; AltName: Full=Gut homing... 38 0.096
AB292627_1(AB292627|pid:none) Lethenteron japonicum LjNotchA mRN... 38 0.096
U61276_1(U61276|pid:none) Human transmembrane protein Jagged 1 (... 38 0.096
BC098393_1(BC098393|pid:none) Homo sapiens jagged 1 (Alagille sy... 38 0.096
DQ867017_1(DQ867017|pid:none) Bos taurus integrin beta6 mRNA, co... 34 0.11
A56136(A56136)jagged protein precursor - rat 38 0.13
M24630_1(M24630|pid:none) Human hexabrachion mRNA, partial cds. 38 0.13
Z81110_2(Z81110|pid:none) Caenorhabditis elegans Cosmid T01D3, c... 38 0.13
AY334001_1(AY334001|pid:none) Anopheles gambiae isolate 4aRR__1 ... 38 0.13
T22945(T22945;T24295)hypothetical protein T01D3.1 - Caenorhabdit... 38 0.13
(Q9QXX0) RecName: Full=Protein jagged-1; Short=Jagged1;... 38 0.13
BC049872_1(BC049872|pid:none) Mus musculus FAT tumor suppressor ... 37 0.16
BC145886_1(BC145886|pid:none) Mus musculus sushi, nidogen and EG... 37 0.16
AB095016_1(AB095016|pid:none) Cynops pyrrhogaster Notch-1 mRNA f... 37 0.16
(Q70E20) RecName: Full=Sushi, nidogen and EGF-like domain-contai... 37 0.16
BC100554_1(BC100554|pid:none) Mus musculus FAT tumor suppressor ... 37 0.16
AY862413_1(AY862413|pid:none) Danio rerio laminin alpha 1 mRNA, ... 32 0.17
AB011537_1(AB011537|pid:none) Homo sapiens mRNA for MEGF4, parti... 37 0.21
AB383997_1(AB383997|pid:none) Synthetic construct DNA, clone: pF... 37 0.21
(Q9W6V6) RecName: Full=Teneurin-1; Short=Ten-1; AltName... 37 0.21
AF468059_1(AF468059|pid:none) Bos taurus integrin beta 5 subunit... 37 0.21
DQ871216_1(DQ871216|pid:none) Bos taurus integrin beta 5 mRNA, c... 37 0.21
T22759(T22759)hypothetical protein F55H12.3 - Caenorhabditis ele... 37 0.21
AB017167_1(AB017167|pid:none) Homo sapiens mRNA for Slit-1 prote... 37 0.21
AL442123_4(AL442123|pid:none) Human DNA sequence from clone RP11... 37 0.21
(O75093) RecName: Full=Slit homolog 1 protein; Short=Sl... 37 0.21
AC096673_18(AC096673|pid:none) Trypanosoma brucei chromosome 3 c... 37 0.21
(P21783) RecName: Full=Neurogenic locus notch protein homolog; ... 37 0.21
AY650311_1(AY650311|pid:none) Macaca fascicularis slit 1 mRNA, p... 37 0.21
AL032657_4(AL032657|pid:none) Caenorhabditis elegans YAC Y47H9C,... 37 0.21
DQ131910_1(DQ131910|pid:none) Danio rerio laminin alpha 1 mRNA, ... 32 0.22
BX883044_5(BX883044|pid:none) Rattus norvegicus chromosome 20, m... 37 0.28
AY286489_1(AY286489|pid:none) Danio rerio tenascin-R mRNA, compl... 37 0.28
S44607_1(S44607|pid:none) beta 7 integrin=lymphocyte Peyer's pat... 37 0.28
BC020198_1(BC020198|pid:none) Homo sapiens multiple EGF-like-dom... 37 0.28
AL773562_2(AL773562|pid:none) Pig DNA sequence from clone PigI-6... 37 0.28
A35844(A35844)Xotch protein - African clawed frog 37 0.28
(Q96KG7) RecName: Full=Multiple epidermal growth factor-like dom... 37 0.28
AC103550_20(AC103550|pid:none) Oryza sativa chromosome 3 BAC OSJ... 37 0.28
CR749437_1(CR749437|pid:none) Homo sapiens mRNA; cDNA DKFZp781K1... 37 0.28
C37057(C37057)fibronectin receptor beta chain - guinea pig (frag... 37 0.28
(Q9DER5) RecName: Full=Teneurin-2; Short=Ten-2; AltName... 36 0.37
BC129830_1(BC129830|pid:none) Homo sapiens tenascin R (restricti... 36 0.37
AK148084_1(AK148084|pid:none) Mus musculus B16 F10Y cells cDNA, ... 36 0.37
(Q9UMG7) RecName: Full=Tenascin-X; Short=TN-X; AltName:... 36 0.37
X98085_1(X98085|pid:none) H.sapiens mRNA for tenascin-R. 36 0.37
AL049547_2(AL049547|pid:none) Human DNA sequence from clone RP1-... 36 0.37
AL645922_24(AL645922|pid:none) Human DNA sequence from clone XXb... 36 0.37
AB209447_1(AB209447|pid:none) Homo sapiens mRNA for Notch homolo... 36 0.37
(P26013) RecName: Full=Integrin beta-8; Flags: Precursor; &B410... 36 0.37
X71923_1(X71923|pid:none) H.sapiens XB gene for tenascin-X, exon... 36 0.37
Z94055_1(Z94055|pid:none) Human DNA sequence from clone RP1-24M1... 36 0.37
BC142880_1(BC142880|pid:none) Danio rerio similar to alpha-2-mac... 36 0.37
AF074902_1(AF074902|pid:none) Caenorhabditis elegans laminin alp... 34 0.47
F87908(F87908;E87908) protein T22A3.8 [imported] - Caenorhabditi... 34 0.48
(P26012) RecName: Full=Integrin beta-8; Flags: Precursor; &A410... 36 0.48
BC084953_1(BC084953|pid:none) Xenopus laevis X-Serrate-1 protein... 36 0.48
AB208887_1(AB208887|pid:none) Homo sapiens mRNA for laminin, gam... 36 0.48
AB098194_1(AB098194|pid:none) Codonosiga gracilis CgPTK-f mRNA f... 36 0.48
AF041835_1(AF041835|pid:none) Homo sapiens laminin gamma 3 chain... 36 0.48
AK295044_1(AK295044|pid:none) Homo sapiens cDNA FLJ60530 complet... 36 0.48
BX571731_2(BX571731|pid:none) Zebrafish DNA sequence from clone ... 36 0.48
AM904777_1(AM904777|pid:none) Ministeria vibrans partial mRNA fo... 36 0.48
(Q9Y6N6) RecName: Full=Laminin subunit gamma-3; AltName: Full=La... 36 0.48
BX088690_1(BX088690|pid:none) Zebrafish DNA sequence from clone ... 35 0.50
BX890618_1(BX890618|pid:none) Zebrafish DNA sequence from clone ... 35 0.50
AE014134_308(AE014134|pid:none) Drosophila melanogaster chromoso... 35 0.63
BC162468_1(BC162468|pid:none) Danio rerio jagged 1a, mRNA (cDNA ... 35 0.63
FN357369_73(FN357369|pid:none) Schistosoma mansoni genome sequen... 35 0.63
EF412964_1(EF412964|pid:none) Danio rerio integrin beta 8 (itgb8... 35 0.63
BC044262_1(BC044262|pid:none) Xenopus laevis similar to delta-li... 35 0.63
CU138540_8(CU138540|pid:none) Zebrafish DNA sequence from clone ... 35 0.63
U70843_1(U70843|pid:none) Xenopus laevis Notch ligand X-Delta-2 ... 35 0.63
AE014134_309(AE014134|pid:none) Drosophila melanogaster chromoso... 35 0.63
(Q8BYI9) RecName: Full=Tenascin-R; Short=TN-R; AltName:... 35 0.63
BX649457_6(BX649457|pid:none) Zebrafish DNA sequence from clone ... 35 0.63
(Q05546) RecName: Full=Tenascin-R; Short=TN-R; AltName:... 35 0.63
EU675625_1(EU675625|pid:none) Hirudo medicinalis beta-integrin m... 35 0.63
(Q9WTS4) RecName: Full=Teneurin-1; Short=Ten-1; AltName... 35 0.63
BC132392_1(BC132392|pid:none) Mus musculus tenascin R, mRNA (cDN... 35 0.63
(Q60675) RecName: Full=Laminin subunit alpha-2; AltName: Full=La... 35 0.63
BC172647_1(BC172647|pid:none) Synthetic construct Mus musculus c... 35 0.63
(Q9W7R4) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 35 0.82
DQ289584_1(DQ289584|pid:none) Spodoptera frugiperda integrin bet... 35 0.82
(Q9P273) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 35 0.82
AK140251_1(AK140251|pid:none) Mus musculus adult male corpora qu... 35 0.82
AY051898_1(AY051898|pid:none) Drosophila melanogaster LD38671 fu... 35 0.82
BT050540_1(BT050540|pid:none) Drosophila melanogaster LD14047 fu... 35 0.82
(O88279) RecName: Full=Slit homolog 1 protein; Short=Sl... 35 0.82
BC163568_1(BC163568|pid:none) Danio rerio slit homolog 1b (Droso... 35 0.82
(Q9QYP0) RecName: Full=Multiple epidermal growth factor-like dom... 35 0.82
AF133730_1(AF133730|pid:none) Rattus norvegicus Slit1 mRNA, comp... 35 0.82
AB073214_1(AB073214|pid:none) Rattus norvegicus SLIT1 mRNA for S... 35 0.82
BX324137_1(BX324137|pid:none) Zebrafish DNA sequence from clone ... 35 0.82
CR954207_381(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 35 0.82
BC140783_1(BC140783|pid:none) Homo sapiens odz, odd Oz/ten-m hom... 35 1.1
M33753_1(M33753|pid:none) D.melanogaster crumbs protein mRNA, co... 35 1.1
AF100772_1(AF100772|pid:none) Homo sapiens tenascin-M1 (TNM1) mR... 35 1.1
(Q9TU53) RecName: Full=Cubilin; Flags: Precursor; &AF137068_1(A... 35 1.1
BC144543_1(BC144543|pid:none) Homo sapiens odz, odd Oz/ten-m hom... 35 1.1
(P10040) RecName: Full=Protein crumbs; AltName: Full=95F; Flags:... 35 1.1
AF195418_1(AF195418|pid:none) Mus musculus ODZ3 (Odz3) mRNA, par... 35 1.1
AB011541_1(AB011541|pid:none) Homo sapiens mRNA for MEGF8, parti... 35 1.1
BC134676_1(BC134676|pid:none) Bos taurus integrin, beta 7, mRNA ... 35 1.1
U73710_1(U73710|pid:none) Entamoeba dispar Gal/GalNAc-inhibitabl... 35 1.1
AY581198_1(AY581198|pid:none) Bos taurus integrin beta 5 (ITGB5)... 35 1.1
CR383662_1(CR383662|pid:none) Zebrafish DNA sequence from clone ... 35 1.1
FN357418_8(FN357418|pid:none) Schistosoma mansoni genome sequenc... 35 1.1
AY118509_1(AY118509|pid:none) Drosophila melanogaster LD13435 fu... 35 1.1
(Q9WTS6) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 35 1.1
BC168665_1(BC168665|pid:none) Rattus norvegicus platelet endothe... 35 1.1
(Q8VIK5) RecName: Full=Platelet endothelial aggregation receptor... 34 1.1
AF444274_1(AF444274|pid:none) Mus musculus Jedi protein mRNA, co... 34 1.1
(Q1RPR6) RecName: Full=Integrin beta-6; Flags: Precursor; &AM11... 33 1.1
EF432729_1(EF432729|pid:none) Sus scrofa integrin beta-6 mRNA, c... 33 1.1
AF461685_1(AF461685|pid:none) Mus musculus Jedi-736 protein mRNA... 34 1.1
AM114539_1(AM114539|pid:none) Sus scrofa mRNA for integrin beta ... 33 1.1
AL645912_4(AL645912|pid:none) Mouse DNA sequence from clone RP23... 34 1.4
BC167592_1(BC167592|pid:none) Xenopus tropicalis hypothetical pr... 34 1.4
AX250013_1(AX250013|pid:none) Sequence 12 from Patent WO0166747.... 34 1.4
(Q9WTS5) RecName: Full=Teneurin-2; Short=Ten-2; AltName... 34 1.4
AE014296_356(AE014296|pid:none) Drosophila melanogaster chromoso... 34 1.4
BC163207_1(BC163207|pid:none) Danio rerio integrin beta 3b, mRNA... 34 1.4
DQ178646_1(DQ178646|pid:none) Danio rerio integrin beta 3.1 (itg... 34 1.4
BC156301_1(BC156301|pid:none) Synthetic construct Mus musculus c... 34 1.4
AK176188_1(AK176188|pid:none) Arabidopsis thaliana mRNA for majo... 34 1.4
BC135385_1(BC135385|pid:none) Xenopus tropicalis hypothetical pr... 34 1.4
(Q8CFM6) RecName: Full=Stabilin-2; AltName: Full=Fasciclin, EGF-... 34 1.4
AB210518_1(AB210518|pid:none) Ciona intestinalis mRNA for jagged... 34 1.8
AK122376_1(AK122376|pid:none) Mus musculus mRNA for mKIAA0813 pr... 34 1.8
AY714129_1(AY714129|pid:none) Homo sapiens anchor protein (RESDA... 34 1.8
AY805407_1(AY805407|pid:none) Danio rerio notch1b mRNA, complete... 34 1.8
AF463419_1(AF463419|pid:none) Naegleria gruberi basal body prote... 34 1.8
CR354599_1(CR354599|pid:none) Zebrafish DNA sequence from clone ... 34 1.8
J03641_1(J03641|pid:none) Chicken cytotactin mRNA, partial cds, ... 34 1.8
BC057131_1(BC057131|pid:none) Mus musculus slit homolog 1 (Droso... 34 1.8
CP001327_224(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 34 1.8
AF144627_1(AF144627|pid:none) Mus musculus SLIT1 (Slit1) mRNA, c... 34 1.8
(P13508) RecName: Full=Protein glp-1; Flags: Precursor; &A32901... 34 1.8
(Q80TR4) RecName: Full=Slit homolog 1 protein; Short=Sl... 34 1.8
CP000587_387(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 34 1.8
AF499438_1(AF499438|pid:none) Caenorhabditis briggsae notch-like... 33 2.4
(P18168) RecName: Full=Serrate protein; AltName: Full=Protein be... 33 2.4
(O60494) RecName: Full=Cubilin; AltName: Full=Intrinsic factor-c... 33 2.4
AY258622_1(AY258622|pid:none) Coccidioides posadasii isolate C73... 33 2.4
AK074051_1(AK074051|pid:none) Homo sapiens mRNA for FLJ00122 pro... 33 2.4
AJ295695_1(AJ295695|pid:none) Homo sapiens mRNA for stabilin-2 (... 33 2.4
AY128478_1(AY128478|pid:none) Drosophila melanogaster RE42104 fu... 33 2.4
AF210321_1(AF210321|pid:none) Danio rerio Slit2 (slit2) mRNA, co... 33 2.4
AL133021_1(AL133021|pid:none) Homo sapiens mRNA; cDNA DKFZp434E0... 33 2.4
AL365215_3(AL365215|pid:none) Human DNA sequence from clone RP11... 33 2.4
AE014297_4255(AE014297|pid:none) Drosophila melanogaster chromos... 33 2.4
AF315555_1(AF315555|pid:none) Caenorhabditis briggsae notch-like... 33 2.4
AB052958_1(AB052958|pid:none) Homo sapiens mRNA for FELE-2, comp... 33 2.4
(Q8WWQ8) RecName: Full=Stabilin-2; AltName: Full=Fasciclin, EGF-... 33 2.4
AF034611_1(AF034611|pid:none) Homo sapiens intrinsic factor-B12 ... 33 2.4
AE014296_1167(AE014296|pid:none) Drosophila melanogaster chromos... 33 3.1
(Q91ZI0) RecName: Full=Cadherin EGF LAG seven-pass G-type recept... 33 3.1
CR388178_1(CR388178|pid:none) Zebrafish DNA sequence from clone ... 33 3.1
L07288_1(L07288|pid:none) Drosophila melanogaster laminin A (Lam... 33 3.1
M96388_1(M96388|pid:none) Drosophila melanogaster laminin A chai... 33 3.1
AP009326_18(AP009326|pid:none) Musa balbisiana genomic DNA, BAC ... 33 3.1
AK302826_1(AK302826|pid:none) Homo sapiens cDNA FLJ54394 complet... 33 3.1
AJ275213_1(AJ275213|pid:none) Homo sapiens mRNA for stabilin-1 (... 33 3.1
AB052956_1(AB052956|pid:none) Homo sapiens mRNA for FELE-1, comp... 33 3.1
AB073215_1(AB073215|pid:none) Rattus norvegicus SLIT1 mRNA for S... 33 3.1
BC172774_1(BC172774|pid:none) Synthetic construct Homo sapiens c... 33 3.1
DQ314735_1(DQ314735|pid:none) Danio rerio crumbs-like protein 1 ... 33 3.1
BC162451_1(BC162451|pid:none) Danio rerio crumbs homolog 2, mRNA... 33 3.1
BC172353_1(BC172353|pid:none) Synthetic construct Homo sapiens c... 33 3.1
AK074062_1(AK074062|pid:none) Homo sapiens mRNA for FLJ00133 pro... 33 3.1
(Q14517) RecName: Full=Protocadherin Fat 1; AltName: Full=Cadher... 33 3.1
T30007(T30007) hypothetical protein F58G4.4 - Caenorhabditis ele... 33 3.1
BT032866_1(BT032866|pid:none) Drosophila melanogaster SD07123 fu... 33 3.1
CR847569_2(CR847569|pid:none) Zebrafish DNA sequence from clone ... 33 3.1
DQ338440_1(DQ338440|pid:none) Metarhizium anisopliae cell wall g... 33 3.1
(Q00174) RecName: Full=Laminin subunit alpha; Short=Lam... 33 3.1
(Q90625) RecName: Full=Zinc finger and BTB domain-containing pro... 33 3.1
BC163555_1(BC163555|pid:none) Danio rerio crumbs homolog 1 (Dros... 33 3.1
AC117075_80(AC117075|pid:none) Dictyostelium discoideum chromoso... 33 3.1
DQ786774_1(DQ786774|pid:none) Homo sapiens FEX1 mRNA, complete c... 33 3.1
U66796_1(U66796|pid:none) Human laminin alpha 2 chain (LAMA2) ge... 33 4.1
AX045097_1(AX045097|pid:none) Sequence 5 from Patent WO0066730. ... 33 4.1
AB052948_1(AB052948|pid:none) Homo sapiens mRNA for SREC-3, comp... 33 4.1
AB052949_1(AB052949|pid:none) Homo sapiens mRNA for SREC-4, comp... 33 4.1
X56811_1(X56811|pid:none) D.melanogaster Serrate mRNA for EGF-li... 33 4.1
AK297744_1(AK297744|pid:none) Homo sapiens cDNA FLJ60311 complet... 33 4.1
(P02468) RecName: Full=Laminin subunit gamma-1; AltName: Full=La... 33 4.1
AX045119_1(AX045119|pid:none) Sequence 27 from Patent WO0066730. 33 4.1
AK291810_1(AK291810|pid:none) Homo sapiens cDNA FLJ78719 complet... 33 4.1
AK298571_1(AK298571|pid:none) Homo sapiens cDNA FLJ59733 complet... 33 4.1
M25063_1(M25063|pid:none) Drosophila mRNA for laminin B2 chain. ... 33 4.1
BC141361_1(BC141361|pid:none) Mus musculus odd Oz/ten-m homolog ... 33 4.1
AX045117_1(AX045117|pid:none) Sequence 25 from Patent WO0066730. 33 4.1
U13646_1(U13646|pid:none) Caenorhabditis elegans cosmid ZK783, c... 33 4.1
BC165945_1(BC165945|pid:none) Synthetic construct Mus musculus c... 33 4.1
AL359052_1(AL359052|pid:none) Homo sapiens mRNA full length inse... 33 4.1
BC135422_1(BC135422|pid:none) Xenopus tropicalis transmembrane p... 33 4.1
AB209873_1(AB209873|pid:none) Homo sapiens mRNA for notch1 prepr... 33 4.1
(Q9R0B6) RecName: Full=Laminin subunit gamma-3; AltName: Full=La... 33 4.1
AK095875_1(AK095875|pid:none) Homo sapiens cDNA FLJ38556 fis, cl... 33 4.1
AX045123_1(AX045123|pid:none) Sequence 31 from Patent WO0066730.... 33 4.1
BC154145_1(BC154145|pid:none) Danio rerio si:dkey-207j16.6, mRNA... 33 4.1
AB385108_1(AB385108|pid:none) Synthetic construct DNA, clone: pF... 33 4.1
AY630342_1(AY630342|pid:none) Manduca sexta plasmatocyte-specifi... 33 4.1
AC116957_104(AC116957|pid:none) Dictyostelium discoideum chromos... 33 4.1
AB287420_1(AB287420|pid:none) Achaearanea tepidariorum At-Delta ... 33 4.1
AL137311_1(AL137311|pid:none) Homo sapiens mRNA; cDNA DKFZp761G0... 33 4.1
(Q27591) RecName: Full=Integrin beta-nu; Flags: Precursor; &AE0... 33 4.1
S16148(S16148;S16878;A36666)gene serrate protein precursor - fru... 33 4.1
AB046104_1(AB046104|pid:none) Macaca fascicularis brain cDNA, cl... 33 4.1
AX133531_1(AX133531|pid:none) Sequence 1 from Patent WO0131011. 33 4.1
AB052950_1(AB052950|pid:none) Homo sapiens mRNA for SREC-5, comp... 33 4.1
(Q03185) RecName: Full=Major surface trophozoite antigen 11; Fla... 33 4.1
BC035009_1(BC035009|pid:none) Homo sapiens delta/notch-like EGF ... 33 4.1
AK144233_1(AK144233|pid:none) Mus musculus RCB-0545 OHTA cDNA, R... 33 4.1
AJ245710_1(AJ245710|pid:none) Mus musculus partial mRNA for tene... 33 4.1
(P15215) RecName: Full=Laminin subunit gamma-1; AltName: Full=La... 33 4.1
(P24043) RecName: Full=Laminin subunit alpha-2; AltName: Full=La... 33 4.1
AJ291489_1(AJ291489|pid:none) Paracentrotus lividus mRNA for fib... 33 4.1
AK289553_1(AK289553|pid:none) Homo sapiens cDNA FLJ76207 complet... 33 4.1
AX045121_1(AX045121|pid:none) Sequence 29 from Patent WO0066730.... 33 4.1
T34513(T34513)hypothetical protein ZK783.1 - Caenorhabditis eleg... 33 4.1
AF086609_1(AF086609|pid:none) Rattus norvegicus neurestin gamma ... 33 4.1
AX045099_1(AX045099|pid:none) Sequence 7 from Patent WO0066730. 33 4.1
AE013599_317(AE013599|pid:none) Drosophila melanogaster chromoso... 33 4.1
BC091809_1(BC091809|pid:none) Danio rerio hypothetical protein L... 31 5.0
(Q6A051) RecName: Full=Attractin-like protein 1; Flags: Precurso... 32 5.3
AF370126_1(AF370126|pid:none) Mus musculus brain EGF repeat-cont... 32 5.3
S58870(S58870;S71844;I49297)reelin precursor - mouse 32 5.3
(Q8JZM4) RecName: Full=Delta and Notch-like epidermal growth fac... 32 5.3
FJ438475_1(FJ438475|pid:none) Paralichthys adspersus type 1 insu... 32 5.3
AK098809_1(AK098809|pid:none) Homo sapiens cDNA FLJ25943 fis, cl... 32 5.3
EF490850_1(EF490850|pid:none) Lepeophtheirus salmonis clone LS00... 32 5.3
AK017094_1(AK017094|pid:none) Mus musculus adult male testis cDN... 32 5.3
AK160406_1(AK160406|pid:none) Mus musculus adult male cerebellum... 32 5.3
AY688677_1(AY688677|pid:none) Mus musculus attractin-like protei... 32 5.3
(O70244) RecName: Full=Cubilin; AltName: Full=Intrinsic factor-c... 32 5.3
AE014134_2523(AE014134|pid:none) Drosophila melanogaster chromos... 32 5.3
D63520_1(D63520|pid:none) Mouse reeler mRNA, complete cds. 32 5.3
(P59222) RecName: Full=Scavenger receptor class F member 2; AltN... 32 5.3
AK172967_1(AK172967|pid:none) Mus musculus mRNA for mKIAA0534 pr... 32 5.3
DQ314737_1(DQ314737|pid:none) Danio rerio crumbs-like protein 2b... 32 5.3
BC071037_1(BC071037|pid:none) Xenopus laevis hypothetical protei... 32 5.3
AB052951_1(AB052951|pid:none) Homo sapiens mRNA for SRECRP-1, co... 32 5.3
(Q5M9B3) RecName: Full=Integrin beta-like protein 1; Flags: Prec... 32 5.3
BX571803_1(BX571803|pid:none) Zebrafish DNA sequence from clone ... 32 5.3
BC155681_1(BC155681|pid:none) Xenopus tropicalis hypothetical pr... 32 5.3
AF008227_1(AF008227|pid:none) Drosophila melanogaster odd Oz pro... 32 5.3
FN359294_8(FN359294|pid:none) Schistosoma mansoni genome sequenc... 32 5.3
L33861_1(L33861|pid:none) Sea urchin fibropellin Ia mRNA, 3' end. 32 5.3
(O88278) RecName: Full=Cadherin EGF LAG seven-pass G-type recept... 32 5.3
AF056116_15(AF056116|pid:none) Fugu rubripes serine/threonine ki... 32 5.3
(Q9W6F8) RecName: Full=Wnt inhibitory factor 1; Short=W... 32 5.3
(Q60841) RecName: Full=Reelin; EC=3.4.21.-; AltName: Fu... 32 5.3
AE014296_3877(AE014296|pid:none) Drosophila melanogaster chromos... 32 5.3
A54148(A54148)odz protein - fruit fly (Drosophila sp.) 32 5.3
AK152755_1(AK152755|pid:none) Mus musculus bone marrow macrophag... 32 5.3
BC046744_1(BC046744|pid:none) Xenopus laevis Integrin beta-like ... 32 5.3
AB062680_1(AB062680|pid:none) Rattus norvegicus Reln mRNA for re... 32 5.3
(Q25092) RecName: Full=Laminin subunit B; Flags: Fragment; &U34... 32 5.3
BC022636_1(BC022636|pid:none) Mus musculus delta/notch-like EGF-... 32 5.3
AE014296_3878(AE014296|pid:none) Drosophila melanogaster chromos... 32 5.3
U09191_1(U09191|pid:none) Carassius auratus Notch-3 homolog mRNA... 30 6.1
A38308(A38308;A35775;S12534;S11708) integrin beta-5 chain precur... 32 6.9
BC088400_1(BC088400|pid:none) Rattus norvegicus laminin, beta 2,... 32 6.9
AK127277_1(AK127277|pid:none) Homo sapiens cDNA FLJ45344 fis, cl... 32 6.9
(P18084) RecName: Full=Integrin beta-5; Flags: Precursor; &BC00... 32 6.9
AL355530_2(AL355530|pid:none) Human DNA sequence from clone RP11... 32 6.9
AB120427_1(AB120427|pid:none) Branchiostoma belcheri Bb2C mRNA f... 32 6.9
T25933(T25933) hypothetical protein W02C12.1 - Caenorhabditis el... 32 6.9
AY892655_1(AY892655|pid:none) Synthetic construct Homo sapiens c... 32 6.9
(Q5VV63) RecName: Full=Attractin-like protein 1; Flags: Precurso... 32 6.9
AE014296_457(AE014296|pid:none) Drosophila melanogaster chromoso... 32 6.9
AK315429_1(AK315429|pid:none) Homo sapiens cDNA, FLJ96485, highl... 32 6.9
CP000749_780(CP000749|pid:none) Marinomonas sp. MWYL1, complete ... 32 6.9
(Q61292) RecName: Full=Laminin subunit beta-2; AltName: Full=S-l... 32 6.9
AF373841_1(AF373841|pid:none) Gallus gallus laminin gamma 1 mRNA... 32 6.9
(P41990) RecName: Full=Anterior pharynx in excess protein 1; Fla... 32 6.9
(P15800) RecName: Full=Laminin subunit beta-2; AltName: Full=S-l... 32 6.9
JC2005(JC2005)integrin beta-5 chain - baboon 32 6.9
D87558_1(D87558|pid:none) Gallus gallus mRNA for C-Serrate-2, pa... 32 6.9
AB024578_1(AB024578|pid:none) Homo sapiens NOTCH4 gene, exon 6, ... 32 6.9
AF374537_1(AF374537|pid:none) Thalassiosira pseudonana isolate C... 32 6.9
AF522196_1(AF522196|pid:none) Homo sapiens scavenger receptor ty... 32 6.9
BC026051_1(BC026051|pid:none) Mus musculus laminin, beta 2, mRNA... 32 6.9
D88991(D88991)protein apx-1 [imported] - Caenorhabditis elegans 32 6.9
BC135592_1(BC135592|pid:none) Xenopus tropicalis delta-like 1, m... 32 6.9
D63395_1(D63395|pid:none) Homo sapiens NOTCH4 mRNA for notch rel... 32 6.9
AY810920_1(AY810920|pid:none) Schistosoma japonicum SJCHGC06221 ... 32 6.9
AL669839_1(AL669839|pid:none) Mouse DNA sequence from clone RP23... 32 9.0
AY438113_1(AY438113|pid:none) Drosophila melanogaster isolate so... 32 9.0
AY438132_1(AY438132|pid:none) Drosophila melanogaster isolate so... 32 9.0
AY437163_1(AY437163|pid:none) Drosophila melanogaster isolate so... 32 9.0
EU553919_1(EU553919|pid:none) Bison bison CD18 (CD18) mRNA, comp... 32 9.0
AK297459_1(AK297459|pid:none) Homo sapiens cDNA FLJ51503 complet... 32 9.0
AY437157_1(AY437157|pid:none) Drosophila melanogaster isolate so... 32 9.0
(P78509) RecName: Full=Reelin; EC=3.4.21.-; Flags: Prec... 32 9.0
AB077987_1(AB077987|pid:none) Halocynthia roretzi mRNA for HrDel... 32 9.0
Z66566_5(Z66566|pid:none) Caenorhabditis elegans Cosmid T25C12, ... 32 9.0
AF228824_1(AF228824|pid:none) Strongylocentrotus purpuratus clon... 32 9.0
AY438115_1(AY438115|pid:none) Drosophila melanogaster isolate so... 32 9.0
AY438114_1(AY438114|pid:none) Drosophila melanogaster isolate so... 32 9.0
AY438111_1(AY438111|pid:none) Drosophila melanogaster isolate so... 32 9.0
AY438105_1(AY438105|pid:none) Drosophila melanogaster isolate so... 32 9.0
AY650356_1(AY650356|pid:none) Macaca fascicularis reelin mRNA, p... 32 9.0
AY437145_1(AY437145|pid:none) Drosophila melanogaster isolate so... 32 9.0
L33862_1(L33862|pid:none) Sea urchin fibropellin III mRNA, 3' end. 32 9.0
S00670(S00670;A26637) neurogenic repetitive locus delta protein ... 32 9.0
AK302099_1(AK302099|pid:none) Homo sapiens cDNA FLJ59067 complet... 32 9.0
AY437211_1(AY437211|pid:none) Drosophila melanogaster isolate so... 32 9.0
(A0JP86) RecName: Full=Laminin subunit gamma-1; Flags: Precursor... 32 9.0
(Q9WVB4) RecName: Full=Slit homolog 3 protein; Short=Sl... 32 9.0
AY438125_1(AY438125|pid:none) Drosophila melanogaster isolate so... 32 9.0
(P32592) RecName: Full=Integrin beta-2; AltName: Full=Cell surfa... 32 9.0
Y18468_1(Y18468|pid:none) Suberites domuncula mRNA for integrin ... 32 9.0
A31246(A31246)neurogenic protein Delta precursor - fruit fly (Dr... 32 9.0
BC150780_1(BC150780|pid:none) Mus musculus slit homolog 3 (Droso... 32 9.0
AY437205_1(AY437205|pid:none) Drosophila melanogaster isolate so... 32 9.0
AY842449_1(AY842449|pid:none) Bubalus bubalis integrin beta-2 (I... 32 9.0
AB098167_1(AB098167|pid:none) Monosiga ovata MoPTK-c mRNA for re... 32 9.0
AF387320_1(AF387320|pid:none) Gallus gallus slit-2 mRNA, partial... 32 9.0
X05140_1(X05140|pid:none) Drosophila melanogaster mRNA fragment ... 32 9.0
BT011693_1(BT011693|pid:none) Arabidopsis thaliana At3g57630 gen... 32 9.0
AY438104_1(AY438104|pid:none) Drosophila melanogaster isolate so... 32 9.0
AY437193_1(AY437193|pid:none) Drosophila melanogaster isolate so... 32 9.0
AK293863_1(AK293863|pid:none) Homo sapiens cDNA FLJ51504 complet... 32 9.0

>AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromosome 2
map 4415041-4520361 strain AX4, complete sequence.
Length = 1203

Score = 95.1 bits (235), Expect(2) = 7e-24
Identities = 51/112 (45%), Positives = 64/112 (57%), Gaps = 4/112 (3%)
Frame = +3

Query: 87 IYCSG--QYCDTYQGICYCDYDHQGEDCSKDFKECPV-FNDYYCN-DKGECDFETGICSC 254
+ CSG C+ G+C C QG DCS FK+CPV + C+ D C+ +TGIC C
Sbjct: 715 LICSGGDNNCNNQTGVCTCSPSQQGSDCSLPFKQCPVGLDSLVCSGDYNNCNNQTGICYC 774

Query: 255 FSNSSFTGPACSIADHYISSVIPSFEEGGDAIFNGWFGDEHINLTLTIGDKQ 410
+ FT CS + YISSV PS GG+A F GWFGD H N +L IG +Q
Sbjct: 775 --DIKFTNDDCSKPNQYISSVSPSTTNGGEASFFGWFGDIHSNPSLLIGAQQ 824

Score = 37.4 bits (85), Expect(2) = 7e-24
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1

Query: 4 CNNQTGLCVCDSTHQG 51
CNNQTG+C CDS HQG
Sbjct: 683 CNNQTGICYCDSNHQG 698

Score = 56.6 bits (135), Expect(2) = 4e-11
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +3

Query: 108 CDTYQGICYCDYDHQGEDCSKDFKECPVFNDYYCNDKG--ECDFETGICSCFSNSSFTGP 281
C+ GIC C QG++CS FK+CPV +D G C+ +TGIC C SN G
Sbjct: 642 CNNQTGICTCSPSQQGQNCSLPFKQCPVGSDSLICSGGNNNCNNQTGICYCDSNHQ--GS 699

Query: 282 ACSI 293
ACSI
Sbjct: 700 ACSI 703

Score = 32.7 bits (73), Expect(2) = 4e-11
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +1

Query: 4 CNNQTGLCVCDSTHQG 51
CN+QTG C CDS HQG
Sbjct: 600 CNDQTGECDCDSNHQG 615

Score = 52.8 bits (125), Expect = 4e-06
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +3

Query: 108 CDTYQGICYCDYDHQGEDCSKDFKECPV-FNDYYCN--DKGECDFETGICSCFSNSSFTG 278
C+ G C CD +HQG +CS FK+CP N C+ D C+ +TGIC+C + S G
Sbjct: 600 CNDQTGECDCDSNHQGPNCSVPFKQCPTGSNSLICSSADYNMCNNQTGICTC--SPSQQG 657

Query: 279 PACSI 293
CS+
Sbjct: 658 QNCSL 662

Score = 33.9 bits (76), Expect = 1.8
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +3

Query: 159 DCSKDFKECPVFNDYYCNDKGECDFETGICSCFSNSSFTGPACSI 293
D SK P ND C GEC+ +TG C C SN GP CS+
Sbjct: 580 DLSKGICVPPCKND--CGIFGECNDQTGECDCDSNHQ--GPNCSV 620

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 562,105,727
Number of extensions: 10693339
Number of successful extensions: 27324
Number of sequences better than 10.0: 497
Number of HSP's gapped: 26670
Number of HSP's successfully gapped: 1145
Length of query: 137
Length of database: 1,040,966,779
Length adjustment: 101
Effective length of query: 36
Effective length of database: 717,333,994
Effective search space: 25824023784
Effective search space used: 25824023784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.75 gvh: 0.28 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
20.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for Contig-U08355-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1