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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01498-1
Contig ID Contig-U01498-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01498-1 (Contig-U01498-1Q) /CSM_Contig/Contig-U01498-1Q.Seq.d
GAGACACTTAAATATCAAAAAAAAAAAAAGCAAATAACACCCAAAAAACA
ACAATTAAATATCACAATAATCAAAAAAAAAAAAAAAAAGCCACAATAAA
TTATATAGCCATATAAGAATAGCTATAATTTATCAAACATTAATATTAAT
CTCACCAGAATTAACTTCAAATTTCAAAAAAACAAAAAAAAAAAAAACCA
CAACTACAATAAAAAAAACCATTACAAATATATATATATATATATATTTA
TATATATGGGNNNGGAAAAAAAAAAAAAAAAAAAAAGGATTGTTACCAAT
ATCATATCCAATTTTAAATGGTAGTCGAATTACAAGG----------TTT
ATCATTTTTAAACGTCATAAAAGTTATGTTTTGGGCGGTATTTGTAGATT
TTATTACAGTTGGTTTATTAATTGCAACTATAGGTTGGTGGGTAACAAAT
AAATTTTTAAGAGTTTCAGTTCATAATCATAGTGTAGATCAAAGTGTAGA
ATGGTTATATGCTTTCGATATTCATTGTAATTCATTCTTTCCACTTTTTA
TCATTTTATATGTCGTTCAATTCTTTTTATTACCAATTCTATTATCAAAT
TCATTATTTGCAGCTATATTATCAAATACTTTATATATTATAGGATTTTC
TTATTATTACTATGTAACCTTTTTAGGATATAATGCATTACCATTCCTTC
AACACACAGTAGTATTTCTATATCCAATTGGTATTCTTTTTGCTCTATAC
ATTGTGTCTGTAGTAATGGGAAAGAATTTAACTGTATCAATTATCAATTT
CTATTTTGGTTATTAAAAATAAATAAATAAATAAATAAATAAATAAATAT
TTAAATATTTTCAAGAATAAATAAATAAAAAAATAAAATANNNNNATAAT
ATATAATAATATATAATAATAATAAAGCAACA
Gap gap included
Contig length 922
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1471136
End point 1472059
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 5
Link to clone list U01498
List of clone(s) 

est1=SSA156F,1,338
est2=SSK140F,1,248
est3=SSJ712Z,339,924
est4=SSA156Z,349,913
est5=SSK140Z,375,891
Translated Amino Acid sequence 
rhlnikkkksk*hpknnn*isq*SKKKKKSHNKLYSHIRIAIIYQTLILISPELTSNFKK
TKKKKTTTTIKKTITNIYIYIYLYIWXXKKKKKKKGLLPISYPILNGSRITR---

---LSFLNVIKVMFWAVFVDFITVGLLIATIGWWVTNKFLRVSVHNHSVDQSVEWLYAFD
IHCNSFFPLFIILYVVQFFLLPILLSNSLFAAILSNTLYIIGFSYYYYVTFLGYNALPFL
QHTVVFLYPIGILFALYIVSVVMGKNLTVSIINFYFGY*k*ink*ink*ifkyfqe*ink
kikxxxni**yiiiikq
Translated Amino Acid sequence (All Frames) 
Frame A:
etlkyqkkkkqitpkkqqlnitiikkkkkkpq*ii*pyknsynlsnininltrinfkfqk
nkkkknhnynkknhykyiyiyifiymgxekkkkkkrivtniisnfkw*snyk---

---fiifkrhksyvlggicrfyyswfincnyrlvgnk*ifksfss*s*crskcrmvicfr
ysl*filstfyhficrsilfitnsiikfiicsyiikyfiyyrifllllcnlfri*citip
sthssisisnwysfcsihcvcsngkefncinyqflfwllkink*ink*ini*ifsrink*
knkixx*yiiiynnnkat

Frame B:
rhlnikkkksk*hpknnn*isq*SKKKKKSHNKLYSHIRIAIIYQTLILISPELTSNFKK
TKKKKTTTTIKKTITNIYIYIYLYIWXXKKKKKKKGLLPISYPILNGSRITR---

---LSFLNVIKVMFWAVFVDFITVGLLIATIGWWVTNKFLRVSVHNHSVDQSVEWLYAFD
IHCNSFFPLFIILYVVQFFLLPILLSNSLFAAILSNTLYIIGFSYYYYVTFLGYNALPFL
QHTVVFLYPIGILFALYIVSVVMGKNLTVSIINFYFGY*k*ink*ink*ifkyfqe*ink
kikxxxni**yiiiikq

Frame C:
dt*iskkkkanntqkttikyhnnqkkkkkatinyiai*e*l*fikh*y*shqn*lqiskk
qkkkkpqlq*kkplqiyiyiyiyiygxgkkkkkkkdcyqyhiqf*mvvelq---

---yhf*ts*klcfgryl*illqlvy*lql*vgg*qinf*efqfiiiv*ikv*ngymlsi
fivihsfhflsfymsfnsfyyqfyyqihylqlyyqilyil*dfliitm*pf*dimhyhsf
ntq*yfyiqlvffllytlcl**weri*lyqlsisilviknk*ink*inkylnifknk*ik
k*nxxiiynni****sn
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01498-1 (Contig-U01498-1Q)
/CSM_Contig/Contig-U01498-1Q.Seq.d
         (932 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01498-1 (Contig-U01498-1Q) /CSM_Contig/Conti...   983  0.0
Contig-U10775-1 (Contig-U10775-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U14051-1 (Contig-U14051-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Conti...    36  0.092
Contig-U14366-1 (Contig-U14366-1Q) /CSM_Contig/Conti...    34  0.36
Contig-U12707-1 (Contig-U12707-1Q) /CSM_Contig/Conti...    34  0.36
Contig-U11745-1 (Contig-U11745-1Q) /CSM_Contig/Conti...    34  0.36
Contig-U11394-1 (Contig-U11394-1Q) /CSM_Contig/Conti...    34  0.36
Contig-U11272-1 (Contig-U11272-1Q) /CSM_Contig/Conti...    34  0.36
Contig-U11024-1 (Contig-U11024-1Q) /CSM_Contig/Conti...    34  0.36

>Contig-U01498-1 (Contig-U01498-1Q) /CSM_Contig/Contig-U01498-1Q.Seq.d
          Length = 932

 Score =  983 bits (496), Expect = 0.0
 Identities = 526/526 (100%)
 Strand = Plus / Plus

                                                                       
Query: 287 ggattgttaccaatatcatatccaattttaaatggtagtcgaattacaaggnnnnnnnnn 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggattgttaccaatatcatatccaattttaaatggtagtcgaattacaaggnnnnnnnnn 346

                                                                       
Query: 347 ntttatcatttttaaacgtcataaaagttatgttttgggcggtatttgtagattttatta 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ntttatcatttttaaacgtcataaaagttatgttttgggcggtatttgtagattttatta 406

                                                                       
Query: 407 cagttggtttattaattgcaactataggttggtgggtaacaaataaatttttaagagttt 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cagttggtttattaattgcaactataggttggtgggtaacaaataaatttttaagagttt 466

                                                                       
Query: 467 cagttcataatcatagtgtagatcaaagtgtagaatggttatatgctttcgatattcatt 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cagttcataatcatagtgtagatcaaagtgtagaatggttatatgctttcgatattcatt 526

                                                                       
Query: 527 gtaattcattctttccactttttatcattttatatgtcgttcaattctttttattaccaa 586
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtaattcattctttccactttttatcattttatatgtcgttcaattctttttattaccaa 586

                                                                       
Query: 587 ttctattatcaaattcattatttgcagctatattatcaaatactttatatattataggat 646
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ttctattatcaaattcattatttgcagctatattatcaaatactttatatattataggat 646

                                                                       
Query: 647 tttcttattattactatgtaacctttttaggatataatgcattaccattccttcaacaca 706
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tttcttattattactatgtaacctttttaggatataatgcattaccattccttcaacaca 706

                                                                       
Query: 707 cagtagtatttctatatccaattggtattctttttgctctatacattgtgtctgtagtaa 766
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 cagtagtatttctatatccaattggtattctttttgctctatacattgtgtctgtagtaa 766

                                                         
Query: 767 tgggaaagaatttaactgtatcaattatcaatttctattttggtta 812
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tgggaaagaatttaactgtatcaattatcaatttctattttggtta 812


 Score =  170 bits (86), Expect = 2e-42
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                       
Query: 90  gccacaataaattatatagccatataagaatagctataatttatcaaacattaatattaa 149
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  gccacaataaattatatagccatataagaatagctataatttatcaaacattaatattaa 149

                                     
Query: 150 tctcaccagaattaacttcaaatttc 175
           ||||||||||||||||||||||||||
Sbjct: 150 tctcaccagaattaacttcaaatttc 175


 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 43/43 (100%)
 Strand = Plus / Plus

                                                     
Query: 30 gcaaataacacccaaaaaacaacaattaaatatcacaataatc 72
          |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 gcaaataacacccaaaaaacaacaattaaatatcacaataatc 72


 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 198 ccacaactacaataaaaaaaaccattacaa 227
           ||||||||||||||||||||||||||||||
Sbjct: 198 ccacaactacaataaaaaaaaccattacaa 227


 Score = 32.2 bits (16), Expect = 1.4
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  gagacacttaaatatc 16
          ||||||||||||||||
Sbjct: 1  gagacacttaaatatc 16


>Contig-U10775-1 (Contig-U10775-1Q) /CSM_Contig/Contig-U10775-1Q.Seq.d
          Length = 2113

 Score = 38.2 bits (19), Expect = 0.023
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 43   aaaaaacaacaattaaata 61
            |||||||||||||||||||
Sbjct: 1319 aaaaaacaacaattaaata 1337


>Contig-U14051-1 (Contig-U14051-1Q) /CSM_Contig/Contig-U14051-1Q.Seq.d
          Length = 661

 Score = 36.2 bits (18), Expect = 0.092
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 293 ttaccaatatcatatcca 310
           ||||||||||||||||||
Sbjct: 439 ttaccaatatcatatcca 422


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,406
Number of Sequences: 8361
Number of extensions: 21406
Number of successful extensions: 2265
Number of sequences better than 10.0: 173
length of query: 932
length of database: 7,895,291
effective HSP length: 16
effective length of query: 916
effective length of database: 7,761,515
effective search space: 7109547740
effective search space used: 7109547740
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.29
Homology vs DNA 
Query= Contig-U01498-1 (Contig-U01498-1Q) /CSM_Contig/Contig-U01498-1Q.Seq.d
         (932 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91025) Dictyostelium discoideum slug cDNA, clone SSJ712.        505   0.0    2
(AU075935) Dictyostelium discoideum slug cDNA, clone SSA156.      486   0.0    2
(C91374) Dictyostelium discoideum slug cDNA, clone SSK140.        418   0.0    2
(C24654) Dictyostelium discoideum slug cDNA, clone SL-X056.       133   9e-68  5
(AU074249) Dictyostelium discoideum slug cDNA, clone SSK140.      170   1e-51  3
(EA102668) Sequence 51 from patent US 7195870.                     38   0.40   2
(AX323565) Sequence 53 from Patent WO0192565.                      38   0.40   2
(AX277888) Sequence 51 from Patent WO0177375.                      38   0.40   2
(GM995913) Sequence 53 from Patent EP2014776.                      38   0.40   2
(EJ410538) 1093012139490 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.61   1
(CT573393) Zebrafish DNA sequence from clone DKEY-48P11 in l...    46   2.4    1
(CU915464) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.4    1
(CU481923) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.4    1
(DW281454) UI-S-GU0-adr-n-21-0-UI.s1 UI-S-GU0 Euprymna scolo...    46   2.4    1
(BP526370) Nicotiana tabacum cDNA, clone: BY11087, primer: M...    46   2.4    1
(CR628336) Legionella pneumophila str. Paris complete genome.      46   2.4    1
(AM454041) Vitis vinifera contig VV78X111122.5, whole genome...    34   5.5    2
(AP009593) Solanum lycopersicum DNA, chromosome 8, clone: C0...    40   7.2    3
(CB563170) AGENCOURT_13329096 NICHD_XGC_Tad2 Xenopus laevis ...    42   7.4    2
(FB571360) Sequence 227 from Patent EP1865317.                     38   9.4    6
(FB571304) Sequence 171 from Patent EP1865317.                     38   9.4    6
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN...    44   9.5    1
(AC124141) Oryza sativa Japonica Group chromosome 5 clone OS...    44   9.5    1
(EA691200) Sequence 70079 from patent US 7365185.                  44   9.5    1
(EA627949) Sequence 6828 from patent US 7365185.                   44   9.5    1
(AR317964) Sequence 514 from patent US 6562958.                    44   9.5    1
(AL512844) Human DNA sequence from clone RP11-90H3 on chromo...    44   9.5    1
(AC107979) Homo sapiens chromosome 15, clone CTD-3049M7, com...    44   9.5    1
(AC090762) Homo sapiens chromosome 15, clone RP11-387E8, com...    44   9.5    1
(AC161857) Bos taurus clone CH240-25M21, WORKING DRAFT SEQUE...    44   9.5    1
(AC150383) Aotus nancymaae clone CH258-462M7, WORKING DRAFT ...    44   9.5    1
(AC140663) Bos taurus clone RP42-111I12, WORKING DRAFT SEQUE...    44   9.5    1
(AC116228) Rattus norvegicus clone CH230-56M1, *** SEQUENCIN...    44   9.5    1
(CU651648) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.5    1
(CU633255) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.5    1
(AC091409) Rattus norvegicus clone CH230-1B4, *** SEQUENCING...    44   9.5    1
(AC091359) Rattus norvegicus clone CH230-1A14, *** SEQUENCIN...    44   9.5    1
(AC091352) Rattus norvegicus clone CH230-1B19, *** SEQUENCIN...    44   9.5    1
(AC074197) Homo sapiens chromosome 1 clone RP11-72O11, WORKI...    44   9.5    1
(AC073097) Homo sapiens chromosome 1 clone RP11-390L17, WORK...    44   9.5    1
(CU467091) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   9.5    1
(AC223493) Bos taurus clone CH240-468A7, WORKING DRAFT SEQUE...    44   9.5    1
(AC219737) Bos taurus clone CH240-323M24, WORKING DRAFT SEQU...    44   9.5    1
(AC211563) Pongo abelii chromosome UNKNOWN clone CH276-92J12...    44   9.5    1
(AC188263) Callicebus moloch clone LB5-4B18, WORKING DRAFT S...    44   9.5    1
(AC168884) Bos taurus clone CH240-221K13, WORKING DRAFT SEQU...    44   9.5    1
(AC019318) Homo sapiens chromosome 4 clone RP11-215P13 map 4...    44   9.5    1
(AC012304) Homo sapiens chromosome 1 clone RP11-39L19, WORKI...    44   9.5    1
(CE103689) tigr-gss-dog-17000371138791 Dog Library Canis lup...    44   9.5    1
(EC278360) BRAINF089484K4 POSSUM_01-POSSUM-C-BRAIN-2KB Trich...    44   9.5    1
(DY335774) OB_SEa02P10.f OB_SEa Ocimum basilicum cDNA clone ...    44   9.5    1
(CU468230) Acinetobacter baumannii str. SDF, complete genome.      44   9.5    1
(CU459141) Acinetobacter baumannii str. AYE, complete genome.      44   9.5    1
(CP001336) Desulfitobacterium hafniense DCB-2, complete genome.    44   9.5    1
(CP001182) Acinetobacter baumannii AB0057, complete genome.        44   9.5    1
(CP001172) Acinetobacter baumannii AB307-0294, complete genome.    44   9.5    1
(CP000486) Bacillus thuringiensis str. Al Hakam, plasmid pAL...    44   9.5    1
(AP009247) Candidatus Vesicomyosocius okutanii HA DNA, compl...    44   9.5    1
(AP008230) Desulfitobacterium hafniense Y51 DNA, complete ge...    44   9.5    1
(AJ965256) Dehalococcoides sp. CBDB1 complete genome.              44   9.5    1

>(C91025) Dictyostelium discoideum slug cDNA, clone SSJ712.
          Length = 586

 Score =  505 bits (255), Expect(2) = 0.0
 Identities = 255/255 (100%)
 Strand = Plus / Plus


Query: 348 tttatcatttttaaacgtcataaaagttatgttttgggcggtatttgtagattttattac 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tttatcatttttaaacgtcataaaagttatgttttgggcggtatttgtagattttattac 60


Query: 408 agttggtttattaattgcaactataggttggtgggtaacaaataaatttttaagagtttc 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agttggtttattaattgcaactataggttggtgggtaacaaataaatttttaagagtttc 120


Query: 468 agttcataatcatagtgtagatcaaagtgtagaatggttatatgctttcgatattcattg 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agttcataatcatagtgtagatcaaagtgtagaatggttatatgctttcgatattcattg 180


Query: 528 taattcattctttccactttttatcattttatatgtcgttcaattctttttattaccaat 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taattcattctttccactttttatcattttatatgtcgttcaattctttttattaccaat 240


Query: 588 tctattatcaaattc 602
           |||||||||||||||
Sbjct: 241 tctattatcaaattc 255

 Score =  287 bits (145), Expect(2) = 0.0
 Identities = 147/148 (99%)
 Strand = Plus / Plus


Query: 664 gtaacctttttaggatataatgcattaccattccttcaacacacagtagtatttctatat 723
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtaacctttttaggatataatgcattaccattccttcaacacacagtagtatttctatat 376


Query: 724 ccaattggtattctttttgctctatacattgtgtctgtagtaatgggaaagaatttaact 783
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccaattggtattctttttgctctatacattgtgtctgtagtaatgggaaagaatttaact 436


Query: 784 gtatcaattatcaatttctattttggtt 811
           |||||| |||||||||||||||||||||
Sbjct: 437 gtatcanttatcaatttctattttggtt 464

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 863,195,138
Number of extensions: 49979037
Number of successful extensions: 3813799
Number of sequences better than 10.0: 60
Length of query: 932
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 908
Effective length of database: 99,340,224,878
Effective search space: 90200924189224
Effective search space used: 90200924189224
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U01498-1 (Contig-U01498-1Q) /CSM_Contig/Contig-U01498-1Q.Seq.d
         (932 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54DD7) RecName: Full=Protein unc-50 homolog;                        315   2e-84
BT083858_1(BT083858|pid:none) Zea mays full-length cDNA clone ZM...   168   2e-40
EF081973_1(EF081973|pid:none) Picea sitchensis clone WS02714_M07...   159   1e-37
EF084832_1(EF084832|pid:none) Picea sitchensis clone WS0281_E07 ...   159   1e-37
AC006298_1(AC006298|pid:none) Arabidopsis thaliana chromosome 2 ...   156   8e-37
AY084886_1(AY084886|pid:none) Arabidopsis thaliana clone 120231 ...   154   4e-36
AK222599_1(AK222599|pid:none) Homo sapiens mRNA for unc-50 homol...   153   7e-36
(O55227) RecName: Full=Protein unc-50 homolog; AltName: Full=Unc...   153   7e-36
(Q3ZBG6) RecName: Full=Protein unc-50 homolog;  &BC103305_1(BC10...   152   2e-35
AL080115_1(AL080115|pid:none) Homo sapiens mRNA; cDNA DKFZp564G0...   152   2e-35
BT021031_1(BT021031|pid:none) Bos taurus unc-50 homolog (C. eleg...   151   3e-35
AY251534_1(AY251534|pid:none) Homo sapiens HSD23 mRNA, complete ...   151   3e-35
AY680454_1(AY680454|pid:none) Macaca mulatta clone dl1_p15_t7_05...   150   5e-35
BC039078_1(BC039078|pid:none) Homo sapiens unc-50 homolog (C. el...   149   1e-34
(Q6DKM1) RecName: Full=Protein unc-50 homolog A;  &BC071145_1(BC...   149   1e-34
(Q5U520) RecName: Full=Protein unc-50 homolog B;  &BC084865_1(BC...   148   2e-34
BT049879_1(BT049879|pid:none) Salmo salar clone ssal-eve-578-092...   145   3e-33
CP001328_422(CP001328|pid:none) Micromonas sp. RCC299 chromosome...   143   7e-33
T24631(T24631)hypothetical protein T07A5.2 - Caenorhabditis eleg...   140   8e-32
(Q10045) RecName: Full=Protein unc-50; AltName: Full=Uncoordinat...   140   8e-32
(P87155) RecName: Full=Protein GMH1 homolog; AltName: Full=Meiot...   134   4e-30
FN357352_11(FN357352|pid:none) Schistosoma mansoni genome sequen...   132   2e-29
CP000592_90(CP000592|pid:none) Ostreococcus lucimarinus CCE9901 ...   131   4e-29
AC064860_1(AC064860|pid:none) Homo sapiens BAC clone RP11-343F11...   119   2e-25
CU928178_575(CU928178|pid:none) Zygosaccharomyces rouxii strain ...   110   5e-23
CR382134_53(CR382134|pid:none) Debaryomyces hansenii strain CBS7...   108   3e-22
CU928169_655(CU928169|pid:none) Kluyveromyces thermotolerans str...   108   3e-22
FM992688_1301(FM992688|pid:none) Candida dubliniensis CD36 chrom...   105   2e-21
AM920435_845(AM920435|pid:none) Penicillium chrysogenum Wisconsi...   104   5e-21
AP007167_35(AP007167|pid:none) Aspergillus oryzae RIB40 genomic ...   102   2e-20
CR382126_916(CR382126|pid:none) Kluyveromyces lactis strain NRRL...   101   4e-20
AE016819_306(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    99   3e-19
(P36125) RecName: Full=Protein GMH1; AltName: Full=GEA1-6 membra...    96   2e-18
CR380958_126(CR380958|pid:none) Candida glabrata strain CBS138 c...    87   8e-16
AM494971_392(AM494971|pid:none) Leishmania braziliensis chromoso...    69   3e-10
AM502253_403(AM502253|pid:none) Leishmania infantum chromosome 35.     69   3e-10
CP000081_390(CP000081|pid:none) Leishmania major chromosome 35, ...    67   1e-09
EU407788_5(EU407788|pid:none) Caenorhabditis briggsae strain ED3...    42   0.030
CP000107_745(CP000107|pid:none) Ehrlichia canis str. Jake, compl...    40   0.11
EU407782_5(EU407782|pid:none) Caenorhabditis briggsae strain ED3...    40   0.15
EU407783_5(EU407783|pid:none) Caenorhabditis briggsae strain ED3...    40   0.15
AL844509_305(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.19
(Q2LCR6) RecName: Full=ATP synthase subunit a; AltName: Full=F-A...    39   0.19
EU407780_5(EU407780|pid:none) Caenorhabditis sp. 5 DRD-2008 mito...    39   0.33
AF538716_1(AF538716|pid:none) Brugia malayi mitochondrion, compl...    39   0.33
EU407802_5(EU407802|pid:none) Caenorhabditis briggsae strain PB8...    38   0.43
EU407789_5(EU407789|pid:none) Caenorhabditis briggsae strain ED3...    38   0.43
EU407781_5(EU407781|pid:none) Caenorhabditis briggsae strain BW2...    38   0.43
(Q8HEC1) RecName: Full=NADH-ubiquinone oxidoreductase chain 2;  ...    38   0.56
AY171105_1(AY171105|pid:none) Caenorhabditis briggsae isolate PB...    38   0.56
AY675574_1(AY675574|pid:none) Uncultured proteobacterium clone S...    37   0.96
EU371102_1(EU371102|pid:none) Uncultured bacterium clone QL-52-S...    37   0.96
FJ498818_1(FJ498818|pid:none) Uncultured bacterium clone QL-50-W...    37   0.96
EU191366_1(EU191366|pid:none) Uncultured bacterium clone 22 PufM...    37   1.3
CP000312_464(CP000312|pid:none) Clostridium perfringens SM101, c...    37   1.3
EU407795_5(EU407795|pid:none) Caenorhabditis briggsae strain JU4...    36   1.6
DQ080992_1(DQ080992|pid:none) Uncultured bacterium clone BACmed3...    36   1.6
AF396436_20(AF396436|pid:none) Tetrahymena thermophila strain SB...    36   2.1
CP000830_3508(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ...    36   2.1
EU564436_1(EU564436|pid:none) Erythromicrobium sp. B04 photosynt...    36   2.1
CP001205_340(CP001205|pid:none) Borrelia burgdorferi ZS7, comple...    36   2.1
CU928165_255(CU928165|pid:none) Kluyveromyces thermotolerans str...    35   2.8
EU191412_1(EU191412|pid:none) Uncultured bacterium clone 72 PufM...    35   2.8
(P24889) RecName: Full=NADH-ubiquinone oxidoreductase chain 2;  ...    35   2.8
FJ498865_1(FJ498865|pid:none) Uncultured bacterium clone CEHL-20...    35   2.8
CP001348_3283(CP001348|pid:none) Clostridium cellulolyticum H10,...    35   2.8
(P51751) RecName: Full=Reaction center protein M chain; AltName:...    35   2.8
EF426472_2(EF426472|pid:none) Paulownia witches'-broom phytoplas...    35   2.8
AM295250_2243(AM295250|pid:none) Staphylococcus carnosus subsp. ...    35   2.8
EU191344_1(EU191344|pid:none) Uncultured bacterium clone 04 PufM...    35   3.6
CP001080_1274(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP...    35   3.6
AF393987_1(AF393987|pid:none) Uncultured bacterium clone EBAC52B...    35   3.6
CP000035_197(CP000035|pid:none) Shigella dysenteriae Sd197 plasm...    35   3.6
DQ915720_2(DQ915720|pid:none) Roseovarius tolerans strain NBRC16...    35   3.6
EU191390_1(EU191390|pid:none) Uncultured bacterium clone 48 PufM...    35   3.6
AM944097_2(AM944097|pid:none) Rhodovulum visakhapatnamense pufL ...    35   3.6
CP000039_126(CP000039|pid:none) Shigella sonnei Ss046 plasmid pS...    35   3.6
CP000947_776(CP000947|pid:none) Haemophilus somnus 2336, complet...    35   3.6
EU191352_1(EU191352|pid:none) Uncultured bacterium clone 102 Puf...    35   3.6
EU191358_1(EU191358|pid:none) Uncultured bacterium clone 13 PufM...    35   3.6
EU191413_1(EU191413|pid:none) Uncultured bacterium clone 73 PufM...    35   3.6
FJ498855_1(FJ498855|pid:none) Uncultured bacterium clone CEHL-20...    35   3.6
AF250284_269(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    35   3.6
AY044250_1(AY044250|pid:none) Uncultured bacterium envhot3 pufM ...    35   3.6
AM412317_1916(AM412317|pid:none) Clostridium botulinum A str. AT...    35   3.6
AB426893_1(AB426893|pid:none) Kluyveromyces lactis SAT gene for ...    35   3.6
AB439526_1(AB439526|pid:none) Asterococcus muratae mitochondrial...    35   4.8
EU371099_1(EU371099|pid:none) Uncultured bacterium clone QL-52-S...    35   4.8
AP006716_357(AP006716|pid:none) Staphylococcus haemolyticus JCSC...    35   4.8
CP000348_808(CP000348|pid:none) Leptospira borgpetersenii serova...    35   4.8
CP001177_1372(CP001177|pid:none) Bacillus cereus AH187, complete...    35   4.8
CP001019_1838(CP001019|pid:none) Coxiella burnetii CbuG_Q212, co...    35   4.8
AF015193_12(AF015193|pid:none) Onchocerca volvulus mitochondrion...    35   4.8
CP000733_1958(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...    35   4.8
EU191395_1(EU191395|pid:none) Uncultured bacterium clone 53 PufM...    35   4.8
EU371088_1(EU371088|pid:none) Uncultured bacterium clone QL-500-...    35   4.8
AB015710_2(AB015710|pid:none) Erythrobacter sp. MBIC3031 gene fo...    35   4.8
CP000077_2045(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6...    35   4.8
FJ498862_1(FJ498862|pid:none) Uncultured bacterium clone CEHL-20...    35   4.8
CP000890_24(CP000890|pid:none) Coxiella burnetii RSA 331, comple...    35   4.8
EU371073_1(EU371073|pid:none) Uncultured bacterium clone Erhai-W...    34   6.2
CP000559_1662(CP000559|pid:none) Methanocorpusculum labreanum Z,...    34   6.2
FJ498826_1(FJ498826|pid:none) Uncultured bacterium clone GHL-50-...    34   6.2
AF386526_166(AF386526|pid:none) Shigella flexneri 2a str. 301 vi...    34   6.2
AY005226_1(AY005226|pid:none) Xylocopa violacea cytochrome oxida...    34   6.2
EU191502_1(EU191502|pid:none) Uncultured bacterium clone G01 Puf...    34   6.2
FJ498837_1(FJ498837|pid:none) Uncultured bacterium clone XCDL-20...    34   6.2
CP001191_2873(CP001191|pid:none) Rhizobium leguminosarum bv. tri...    34   6.2
(A1SBD7) RecName: Full=Protoheme IX farnesyltransferase;        ...    34   6.2
CR936503_377(CR936503|pid:none) Lactobacillus sakei strain 23K c...    34   6.2
AY675570_1(AY675570|pid:none) Uncultured proteobacterium clone E...    34   8.1
FJ498816_1(FJ498816|pid:none) Uncultured bacterium clone QL-50-W...    34   8.1
CP000271_1635(CP000271|pid:none) Burkholderia xenovorans LB400 c...    34   8.1
DQ927303_20(DQ927303|pid:none) Tetrahymena malaccensis strain MP...    34   8.1
FJ498861_1(FJ498861|pid:none) Uncultured bacterium clone CEHL-20...    34   8.1
EU009366_2(EU009366|pid:none) Roseobacter sp. B11 photosynthetic...    34   8.1
EF015440_1(EF015440|pid:none) Elisolimax flavescens cytochrome o...    34   8.1
AB371026_1(AB371026|pid:none) Camponotus japonicus mitochondrial...    34   8.1
CP001053_1242(CP001053|pid:none) Burkholderia phytofirmans PsJN ...    34   8.1
AF486825_3(AF486825|pid:none) Rhodovulum euryhalinum PufA (pufA)...    34   8.1
AY452691_9(AY452691|pid:none) Nephila clavata mitochondrion, com...    34   8.1
AF059348_1(AF059348|pid:none) Apis cerana NADH dehydrogenase sub...    34   8.1
FJ498863_1(FJ498863|pid:none) Uncultured bacterium clone CEHL-20...    34   8.1
AY044248_1(AY044248|pid:none) Uncultured bacterium envhot1 pufM ...    34   8.1
AY671989_16(AY671989|pid:none) Uncultured proteobacterium eBACre...    34   8.1
AC010134_3(AC010134|pid:none) Homo sapiens BAC clone RP11-127K18...    34   8.1
AB011073_2(AB011073|pid:none) Porphyrobacter neustonensis pufL, ...    34   8.1
AF393984_1(AF393984|pid:none) Uncultured bacterium clone EBAC29C...    34   8.1

>(Q54DD7) RecName: Full=Protein unc-50 homolog;
          Length = 261

 Score =  315 bits (806), Expect = 2e-84
 Identities = 154/155 (99%), Positives = 155/155 (100%)
 Frame = +1

Query: 349 LSFLNVIKVMFWAVFVDFITVGLLIATIGWWVTNKFLRVSVHNHSVDQSVEWLYAFDIHC 528
           LSFLNVIKVMFWAVFVDFITVGLLIATIGWWVTNKFLRVSVHNHSVDQSVEWLYAFDIHC
Sbjct: 105 LSFLNVIKVMFWAVFVDFITVGLLIATIGWWVTNKFLRVSVHNHSVDQSVEWLYAFDIHC 164

Query: 529 NSFFPLFIILYVVQFFLLPILLSNSLFAAILSNTLYIIGFSYYYYVTFLGYNALPFLQHT 708
           NSFFPLFIILYVVQFFLLPILLSNSLFAAILSNTLYIIGFSYYYYVTFLGYNALPFLQHT
Sbjct: 165 NSFFPLFIILYVVQFFLLPILLSNSLFAAILSNTLYIIGFSYYYYVTFLGYNALPFLQHT 224

Query: 709 VVFLYPIGILFALYIVSVVMGKNLTVSIINFYFGY 813
           VVFLYPIGILFALYIVSVVMGKNLTVSIINFYFG+
Sbjct: 225 VVFLYPIGILFALYIVSVVMGKNLTVSIINFYFGF 259

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 870,432,968
Number of extensions: 13653551
Number of successful extensions: 45734
Number of sequences better than 10.0: 128
Number of HSP's gapped: 45540
Number of HSP's successfully gapped: 129
Length of query: 310
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 182
Effective length of database: 636,901,312
Effective search space: 115916038784
Effective search space used: 115916038784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.70  gvh: 0.41  alm: 0.17  top: 0.47  tms: 0.20  mit: 0.34  mip: 0.21
 nuc: 0.28  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U01498-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0