Contig-U08272-1 |
Contig ID |
Contig-U08272-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
584 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
3189535 |
End point |
3189048 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U08272 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.12 |
Homology vs DNA |
Query= Contig-U08272-1 (Contig-U08272-1Q) /CSM_Contig/Contig-U08272-1Q.Seq.d (584 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ375645) Dictyostelium discoideum cDNA clone:ddc19o12, 3' ... 781 0.0 2 (BX323988) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 56 0.001 1 (CP000848) Rickettsia rickettsii str. 'Sheila Smith', comple... 50 0.090 1 (CP000847) Rickettsia akari str. Hartford, complete genome. 50 0.090 1 (CP000766) Rickettsia rickettsii str. Iowa, complete genome. 50 0.090 1 (AJ235271) Rickettsia prowazekii strain Madrid E, complete g... 50 0.090 1 (AE008600) Rickettsia conorii str. Malish 7, section 32 of 1... 50 0.090 1 (BH762774) BMBAC330H11SP6_PSU Brugia malayi Genomic Bac Libr... 48 0.35 1 (CP000409) Rickettsia canadensis str. McKiel, complete genome. 48 0.35 1 (AC102715) Mus musculus clone RP24-491A14, WORKING DRAFT SEQ... 42 0.47 2 (AL954341) Mouse DNA sequence from clone RP23-213D14 on chro... 42 0.51 2 (CT009705) Zebrafish DNA sequence from clone DKEYP-81C5 in l... 46 1.4 1 (BX664743) Zebrafish DNA sequence from clone DKEY-11D20 in l... 46 1.4 1 (BX649497) Zebrafish DNA sequence from clone DKEYP-15A6 in l... 46 1.4 1 (BX088583) Zebrafish DNA sequence from clone CH211-211K8 in ... 46 1.4 1 (BX004879) Zebrafish DNA sequence from clone CH211-157L7 in ... 46 1.4 1 (AC187667) Microcebus murinus clone CH257-93L7, WORKING DRAF... 46 1.4 1 (ED800523) MG__Ba0083F10f MG__Ba Mimulus guttatus genomic, g... 46 1.4 1 (DW249216) Cm_mx1_19h05_SP6 Green Shore Crab Multiple Tissue... 46 1.4 1 (DV642991) Cm_mx1_01c04_SP6 Green Shore Crab Multiple Tissue... 46 1.4 1 (FF555604) MOPFP82TF MOP Vigna unguiculata cDNA 5', mRNA seq... 46 1.4 1 (FF548199) MOPFP82TR MOP Vigna unguiculata cDNA 3', mRNA seq... 46 1.4 1 (CP000683) Rickettsia massiliae MTU5, complete genome. 46 1.4 1 (CP000053) Rickettsia felis URRWXCal2, complete genome. 46 1.4 1 (AE017197) Rickettsia typhi str. Wilmington complete genome. 46 1.4 1 (ER385941) 1094424012480 Global-Ocean-Sampling_GS-34-01-01-1... 32 3.6 2 (BX649505) Zebrafish DNA sequence from clone CH211-113M13 in... 44 5.5 1 (AC158129) Mus musculus chromosome 15, clone RP24-359B13, co... 44 5.5 1 (AC101713) Mus musculus chromosome 15, clone RP23-282L9, com... 44 5.5 1 (AM438694) Vitis vinifera contig VV78X131380.8, whole genome... 44 5.5 1 (CQ584682) Sequence 12440 from Patent WO0171042. 44 5.5 1 (AR511849) Sequence 16809 from patent US 6703491. 44 5.5 1 (AR496567) Sequence 1527 from patent US 6703491. 44 5.5 1 (EU254621) Plasmodium sp. circ caseinolytic protease C (clpc... 44 5.5 1 (BT021336) Drosophila melanogaster RE01856 full insert cDNA. 44 5.5 1 (AY118381) Drosophila melanogaster RE26705 full insert cDNA. 44 5.5 1 (AJ235250) Ceratosolen stupefactus mitochondrial cytb gene, ... 44 5.5 1 (AC190477) Trichinella spiralis BAC clone TS195-7H12 from ch... 44 5.5 1 (AC079385) Homo sapiens 12q BAC RP11-482D24 (Roswell Park Ca... 44 5.5 1 (AC206069) Equus caballus clone CH241-56M3, WORKING DRAFT SE... 44 5.5 1 (AC202826) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 44 5.5 1 (AC184318) Strongylocentrotus purpuratus clone R3-4005F4, WO... 44 5.5 1 (AC181341) Strongylocentrotus purpuratus clone R3-40C5, WORK... 44 5.5 1 (AC181299) Strongylocentrotus purpuratus clone R3-115H9, WOR... 44 5.5 1 (AC180391) Strongylocentrotus purpuratus clone R3-3106C19, W... 44 5.5 1 (AC179044) Strongylocentrotus purpuratus clone R3-4005D21, W... 44 5.5 1 (AC178353) Strongylocentrotus purpuratus clone R3-1114F12, W... 44 5.5 1 (AC176043) Strongylocentrotus purpuratus clone R3-18J7, WORK... 44 5.5 1 (AC167472) Bos taurus clone CH240-190C17, WORKING DRAFT SEQU... 44 5.5 1 (AC016253) Homo sapiens chromosome 12 clone RP11-115E9, WORK... 44 5.5 1 (AC006294) Homo sapiens chromosome 4, *** SEQUENCING IN PROG... 44 5.5 1 (FH705633) CHO_OF5172xn03r1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 5.5 1 (FH705555) CHO_OF5172xn03f1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 5.5 1 (FH049231) CHO_OF3319xe04f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 5.5 1 (ER739480) SB_BBc89-N21.R SB_BBc Sorghum bicolor genomic 3',... 44 5.5 1 (EK379442) 1095469454532 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.5 1 (EJ233197) 1092404041009 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.5 1 (EI361724) GM_WBc0115H06.r GM_WBc Glycine max genomic clone ... 44 5.5 1 (ED710640) GM_WBb0057J16.f GM_WBb Glycine max genomic clone ... 44 5.5 1 (ED071512) AUAC-aap36c11.b1 Ascaris suum whole genome shotgu... 44 5.5 1 (DX512488) 762_2_14169808_5489_43589_019 Arachis duranensis ... 44 5.5 1 (BZ075977) lkg93c08.g1 B.oleracea002 Brassica oleracea genom... 44 5.5 1 (BZ075918) lkg93c08.b1 B.oleracea002 Brassica oleracea genom... 44 5.5 1 (BH948104) obv16d11.b1 B.oleracea002 Brassica oleracea genom... 44 5.5 1 (EC245519) 218527 CK01 Drosophila melanogaster cDNA clone 46... 44 5.5 1 (EC236198) 330781 CK01 Drosophila melanogaster cDNA clone 80... 44 5.5 1 (CO283968) EK164923.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr... 44 5.5 1 (BQ120881) EST606457 mixed potato tissues Solanum tuberosum ... 44 5.5 1 (BI162571) RE01856.3prime RE Drosophila melanogaster normali... 44 5.5 1 (BG590507) EST498349 P. infestans-challenged leaf Solanum tu... 44 5.5 1 (AC218054) Peromyscus maniculatus rufinus clone CH233-1M7, W... 42 6.8 2 (AC164446) Bos taurus clone CH240-153P14, *** SEQUENCING IN ... 38 7.3 2 (AM461724) Vitis vinifera, whole genome shotgun sequence, co... 40 7.3 2 (EI000285) MUGQ_CH252P170K11Sp6_CN218_038 CHORI-252 Vervet M... 36 9.3 2
>(BJ375645) Dictyostelium discoideum cDNA clone:ddc19o12, 3' end, single read. Length = 575
Score = 781 bits (394), Expect(2) = 0.0 Identities = 394/394 (100%) Strand = Plus / Minus
Query: 191 ccattgaatacgatactacgtgatgagccatggctaataatgagggaatatgatagaatc 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 395 ccattgaatacgatactacgtgatgagccatggctaataatgagggaatatgatagaatc 336
Query: 251 aatcaaggtacgtcggtgtctggtggcaactatattgatataccaaagagaccacattgg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 aatcaaggtacgtcggtgtctggtggcaactatattgatataccaaagagaccacattgg 276
Query: 311 agctacaatatgtctggcgacaggttgaaagaagaggaaagaattatgttctcacgttgg 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 agctacaatatgtctggcgacaggttgaaagaagaggaaagaattatgttctcacgttgg 216
Query: 371 ttggagaatatcgttataaaatacgacaaaagtagattaaactactttgaacataattta 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 ttggagaatatcgttataaaatacgacaaaagtagattaaactactttgaacataattta 156
Query: 431 gaggtttggagacagctttggagggtttcagagagatcagatgtaattctactagtaacc 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 155 gaggtttggagacagctttggagggtttcagagagatcagatgtaattctactagtaacc 96
Query: 491 gatgccagataccctttattccatttcccaccatctctctataactacatcaatgtagat 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95 gatgccagataccctttattccatttcccaccatctctctataactacatcaatgtagat 36
Query: 551 ctcaagaaaccaatgatcttaatcttaaacaaga 584 |||||||||||||||||||||||||||||||||| Sbjct: 35 ctcaagaaaccaatgatcttaatcttaaacaaga 2
Score = 254 bits (128), Expect(2) = 0.0 Identities = 128/128 (100%) Strand = Plus / Minus
Query: 12 aagatgatgaaattgggaaatcaattaaacatattaatgaaattaataaacaaatgaaat 71 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 aagatgatgaaattgggaaatcaattaaacatattaatgaaattaataaacaaatgaaat 515
Query: 72 cattcgatcttggtagtaaacaaattacaaatggtggtagaagaattaataaattagtta 131 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 514 cattcgatcttggtagtaaacaaattacaaatggtggtagaagaattaataaattagtta 455
Query: 132 caatcttt 139 |||||||| Sbjct: 454 caatcttt 447
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 565,906,757 Number of extensions: 33372153 Number of successful extensions: 2664794 Number of sequences better than 10.0: 75 Length of query: 584 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 561 Effective length of database: 93,106,754,628 Effective search space: 52232889346308 Effective search space used: 52232889346308 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.24 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
1 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |