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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08256-1
Contig ID Contig-U08256-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U08256-1 (Contig-U08256-1Q) /CSM_Contig/Contig-U08256-1Q.Seq.d
TATCGTTTAATGTGCCAATAAAAAATAATAAAAAATGTTATTACAATTAA
GTAAAATATTAATATTATGTTTAATGTTCTTTTTCGTTAGAGGACAAGAT
TCATCATCAACTATCTCCTCCTCCTCGGTCTCTTCCTCTTCAGTGCCTTC
CTCTTCATCCGAATCTTTCAATGGTCAATATATATTCTCTTTTACAGAAG
CCTATACTTTAATGGCAATTGATATTAGTAATGGTAACTTGGTTGTTAAC
CATTCCTTAAGTGAATTGATTCTTCCTTCCTCTATTTTATCATATGATCC
AACTACATACTCCTTCAGATTTTTTGGATATTATGAACAATATCCAGGTT
ATCATTTCCTATTGTCAAACTATAGTTTAACAACTAATACATTCACTGCT
ATTACTAGTTCAATTCTAGATTCATTGTACTACTCTTATGCTATTCAACC
ATATGTCCAAATCGGAACTACTTTCTACATGCCAATTTTTGATGATGCAA
AGCCTTCAACCGATTTAAACATTAGAAATTGGGATTTTAATAACTTTATT
GTAGGTACTTTAGAAATTGAATTACCAGATTTTAATGCATCAATCANNNN
NNNNN
Gap no gap
Contig length 605
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 6046430
End point 6047025
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U08256
List of clone(s) 

est1=CFI622F,1,596
Translated Amino Acid sequence 
iv*cankk**KMLLQLSKILILCLMFFFVRGQDSSSTISSSSVSSSSVPSSSSESFNGQY
IFSFTEAYTLMAIDISNGNLVVNHSLSELILPSSILSYDPTTYSFRFFGYYEQYPGYHFL
LSNYSLTTNTFTAITSSILDSLYYSYAIQPYVQIGTTFYMPIFDDAKPSTDLNIRNWDFN
NFIVGTLEIELPDFNASIXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
yrlmcq*kiiknvitik*ninimfnvlfr*rtrfiinyllllglflfsaflfirifqwsi
yilfyrslyfngn*y**w*lgc*pflk*idssflyfii*snyillqifwil*tisrlsfp
ivkl*fnn*yihcyy*fnsrfivlllcysticpnrnyflhanf**ckafnrfkh*klgf*
*lycryfrn*itrf*cinxxx


Frame B:
iv*cankk**KMLLQLSKILILCLMFFFVRGQDSSSTISSSSVSSSSVPSSSSESFNGQY
IFSFTEAYTLMAIDISNGNLVVNHSLSELILPSSILSYDPTTYSFRFFGYYEQYPGYHFL
LSNYSLTTNTFTAITSSILDSLYYSYAIQPYVQIGTTFYMPIFDDAKPSTDLNIRNWDFN
NFIVGTLEIELPDFNASIXXX


Frame C:
sfnvpiknnkkcyyn*vky*yyv*csfsledkihhqlsppprslplqclplhpnlsmvni
ysllqkpil*wqlilvmvtwlltip*vn*fflplfyhmiqlhtpsdfldimnniqviisy
cqtiv*qlihsllllvqf*ihcttlmlfnhmsksellstcqflmmqslqpi*tleigili
tll*vl*klnyqilmhqsxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08256-1 (Contig-U08256-1Q)
/CSM_Contig/Contig-U08256-1Q.Seq.d
         (605 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08256-1 (Contig-U08256-1Q) /CSM_Contig/Conti...  1112  0.0
Contig-U14244-1 (Contig-U14244-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U12505-1 (Contig-U12505-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U11507-1 (Contig-U11507-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U10137-1 (Contig-U10137-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U08172-1 (Contig-U08172-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U13420-1 (Contig-U13420-1Q) /CSM_Contig/Conti...    32  0.66
Contig-U12434-1 (Contig-U12434-1Q) /CSM_Contig/Conti...    32  0.66
Contig-U11489-1 (Contig-U11489-1Q) /CSM_Contig/Conti...    32  0.66

>Contig-U08256-1 (Contig-U08256-1Q) /CSM_Contig/Contig-U08256-1Q.Seq.d
          Length = 605

 Score = 1112 bits (561), Expect = 0.0
 Identities = 561/561 (100%)
 Strand = Plus / Plus

                                                                       
Query: 36  tgttattacaattaagtaaaatattaatattatgtttaatgttctttttcgttagaggac 95
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36  tgttattacaattaagtaaaatattaatattatgtttaatgttctttttcgttagaggac 95

                                                                       
Query: 96  aagattcatcatcaactatctcctcctcctcggtctcttcctcttcagtgccttcctctt 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  aagattcatcatcaactatctcctcctcctcggtctcttcctcttcagtgccttcctctt 155

                                                                       
Query: 156 catccgaatctttcaatggtcaatatatattctcttttacagaagcctatactttaatgg 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 catccgaatctttcaatggtcaatatatattctcttttacagaagcctatactttaatgg 215

                                                                       
Query: 216 caattgatattagtaatggtaacttggttgttaaccattccttaagtgaattgattcttc 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 caattgatattagtaatggtaacttggttgttaaccattccttaagtgaattgattcttc 275

                                                                       
Query: 276 cttcctctattttatcatatgatccaactacatactccttcagattttttggatattatg 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cttcctctattttatcatatgatccaactacatactccttcagattttttggatattatg 335

                                                                       
Query: 336 aacaatatccaggttatcatttcctattgtcaaactatagtttaacaactaatacattca 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aacaatatccaggttatcatttcctattgtcaaactatagtttaacaactaatacattca 395

                                                                       
Query: 396 ctgctattactagttcaattctagattcattgtactactcttatgctattcaaccatatg 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctgctattactagttcaattctagattcattgtactactcttatgctattcaaccatatg 455

                                                                       
Query: 456 tccaaatcggaactactttctacatgccaatttttgatgatgcaaagccttcaaccgatt 515
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tccaaatcggaactactttctacatgccaatttttgatgatgcaaagccttcaaccgatt 515

                                                                       
Query: 516 taaacattagaaattgggattttaataactttattgtaggtactttagaaattgaattac 575
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 taaacattagaaattgggattttaataactttattgtaggtactttagaaattgaattac 575

                                
Query: 576 cagattttaatgcatcaatca 596
           |||||||||||||||||||||
Sbjct: 576 cagattttaatgcatcaatca 596


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  tatcgtttaatgtgcc 16
          ||||||||||||||||
Sbjct: 1  tatcgtttaatgtgcc 16


>Contig-U14244-1 (Contig-U14244-1Q) /CSM_Contig/Contig-U14244-1Q.Seq.d
          Length = 179

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 52  taaaatattaatattatgtttaa 74
           ||||||||||| |||||||||||
Sbjct: 104 taaaatattaaaattatgtttaa 82


>Contig-U13982-1 (Contig-U13982-1Q) /CSM_Contig/Contig-U13982-1Q.Seq.d
          Length = 1444

 Score = 36.2 bits (18), Expect = 0.042
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 285 ttttatcatatgatccaa 302
           ||||||||||||||||||
Sbjct: 710 ttttatcatatgatccaa 693


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6947
Number of Sequences: 6905
Number of extensions: 6947
Number of successful extensions: 772
Number of sequences better than 10.0: 74
length of query: 605
length of database: 5,674,871
effective HSP length: 16
effective length of query: 589
effective length of database: 5,564,391
effective search space: 3277426299
effective search space used: 3277426299
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.12
Homology vs DNA 
Query= Contig-U08256-1 (Contig-U08256-1Q) /CSM_Contig/Contig-U08256-1Q.Seq.d
         (605 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ361647) Dictyostelium discoideum cDNA clone:ddc18k06, 5' ...  1033   0.0    1
(AC180803) Strongylocentrotus purpuratus clone R3-3071H02, W...    38   0.016  2
(AC179749) Strongylocentrotus purpuratus clone R3-1018C08, W...    38   0.016  2
(CT954298) N.leucogenys DNA sequence from clone CH271-261A22.      50   0.093  1
(AC206412) Pongo abelii chromosome UNKNOWN clone CH276-288O1...    50   0.093  1
(DV034449) XLTCR221 Cornea-lens transdifferentiation library...    50   0.093  1
(DC039743) Xenopus laevis NBRP cDNA clone:xlk112p04ex, 5' end.     50   0.093  1
(DC006821) Xenopus laevis NBRP cDNA clone:rxlk112p04ex, 3' end.    50   0.093  1
(DC001982) Xenopus laevis NBRP cDNA clone:rxlk57g05ex, 3' end.     50   0.093  1
(BQ387420) NISC_mn23g02.x1 NICHD_XGC_Ov1 Xenopus laevis cDNA...    50   0.093  1
(AC097172) Rattus norvegicus clone CH230-2G16, *** SEQUENCIN...    38   0.21   2
(AC151995) Mus musculus BAC clone RP23-152L21 from 16, compl...    48   0.37   1
(AL356672) Human DNA sequence from clone RP11-452D24 on chro...    48   0.37   1
(AC093313) Trypanosoma cruzi chromosome unknown clone Tc3-42...    48   0.37   1
(CO081494) GR__Ea45J19.f GR__Ea Gossypium raimondii cDNA clo...    48   0.37   1
(AC207719) Pongo abelii BAC clone CH276-499K17 from chromoso...    46   1.4    1
(AC206926) Pongo abelii BAC clone CH276-258E19 from chromoso...    46   1.4    1
(AC193185) Pan troglodytes BAC clone CH251-443P2 from chromo...    46   1.4    1
(AC212954) Chlorocebus aethiops clone CH252-112F3, WORKING D...    46   1.4    1
(EJ427874) 1093015236075 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.4    1
(EG930585) EST_ssal_evf_18312 ssalevf mixed_tissue Salmo sal...    46   1.4    1
(EG921327) EST_ssal_evf_551 ssalevf mixed_tissue Salmo salar...    46   1.4    1
(EG918055) EST_ssal_evf_57147 ssalevf mixed_tissue Salmo sal...    46   1.4    1
(EG828571) EST_ssal_eve_41007 ssaleve thyroid Salmo salar cD...    46   1.4    1
(DY707443) EST_ssal_rgb2_63182 ssalrgb2 mixed_tissue Salmo s...    46   1.4    1
(CK883072) SGP147785 Atlantic salmon Heart cDNA library Salm...    46   1.4    1
(CA383412) 663588 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ...    46   1.4    1
(BX304022) AGENAE Rainbow trout multi-tissues - normalized +...    46   1.4    1
(FD644153) MF1_11_A08.b2_F001 Limnanthes alba EST Library MF...    46   1.4    1
(AC027288) Homo sapiens 12 BAC RP11-359M6 (Roswell Park Canc...    40   2.0    2
(AC102981) Rattus norvegicus clone CH230-56O24, *** SEQUENCI...    34   2.8    2
(EB812246) 3763_D10 Botrytis cinerea expressed sequence tags...    34   3.7    2
(EB809009) 3493_H01 Botrytis cinerea expressed sequence tags...    34   3.8    2
(EB804946) 3478_H21 Botrytis cinerea expressed sequence tags...    34   3.8    2
(EB803555) 3473_J03 Botrytis cinerea expressed sequence tags...    34   3.8    2
(EB802809) 3471_F18 Botrytis cinerea expressed sequence tags...    34   3.8    2
(AL113368) Botrytis cinerea strain T4 cDNA library.                34   3.8    2
(AL111360) Botrytis cinerea strain T4 cDNA library.                34   3.8    2
(AL113092) Botrytis cinerea strain T4 cDNA library.                34   3.8    2
(AL112940) Botrytis cinerea strain T4 cDNA library.                34   3.8    2
(AL112382) Botrytis cinerea strain T4 cDNA library.                34   3.8    2
(CA901090) PCS03895F Scarlet Runner Bean Suspensor Region Tr...    40   5.0    2
(BX511129) Zebrafish DNA sequence from clone RP71-68N21 in l...    44   5.7    1
(AC132578) Mus musculus BAC clone RP24-458M10 from 8, comple...    44   5.7    1
(AC121851) Mus musculus chromosome 8 clone RP24-92F5, comple...    44   5.7    1
(AC187522) Pan troglodytes BAC clone CH251-454H3 from chromo...    44   5.7    1
(EA333178) Sequence 5670 from patent US 7306913.                   44   5.7    1
(AY422211) Homo sapiens cholesteryl ester transfer protein, ...    44   5.7    1
(AL596254) Human DNA sequence from clone RP11-252L24 on chro...    44   5.7    1
(AL132855) Human chromosome 14 DNA sequence BAC C-2201G16 of...    44   5.7    1
(AF265342) Homo sapiens chromosome 8 clone CTD-2053N22 map p...    44   5.7    1
(AC108721) Homo sapiens 12 BAC RP11-272B17 (Roswell Park Can...    44   5.7    1
(AC108360) Homo sapiens 12q BAC RP11-29C9 (Roswell Park Canc...    44   5.7    1
(AC106878) Homo sapiens BAC clone RP11-648O9 from 4, complet...    44   5.7    1
(AC092104) Homo sapiens BAC clone RP11-397J20 from 7, comple...    44   5.7    1
(AC023825) Homo sapiens chromosome 16 clone RP11-322D14, com...    44   5.7    1
(AC012181) Homo sapiens chromosome 16 clone RP11-325K4, comp...    44   5.7    1
(AC005795) Homo sapiens chromosome 19, cosmid F20649, comple...    44   5.7    1
(AC148221) Colobus guereza clone CH272-131H22, WORKING DRAFT...    44   5.7    1
(AC147299) Pan troglodytes chromosome 7 clone RP43-56N17, WO...    44   5.7    1
(AC146475) Hylobates klossii clone RZ140-84A14, WORKING DRAF...    44   5.7    1
(AC145892) Pan troglodytes chromosome 7 clone RP43-40I5, WOR...    44   5.7    1
(AC139490) Homo sapiens chromosome 5 clone RP11-816J16, WORK...    44   5.7    1
(AC112061) Rattus norvegicus clone CH230-182D20, *** SEQUENC...    44   5.7    1
(AC111965) Rattus norvegicus clone CH230-185I9, WORKING DRAF...    44   5.7    1
(AC100880) Mus musculus clone RP23-67I6, LOW-PASS SEQUENCE S...    44   5.7    1
(AC060776) Homo sapiens chromosome 12 clone RP11-272B17 map ...    44   5.7    1
(CR954215) Ostreococcus tauri chromosome 15 contig 1, DNA se...    44   5.7    1
(CR940347) Theileria annulata genomic DNA chromosome 1 part 1.     44   5.7    1
(AC203107) Macaca mulatta clone CH250-171J15, WORKING DRAFT ...    44   5.7    1
(AC025482) Homo sapiens clone RP11-29C9, WORKING DRAFT SEQUE...    44   5.7    1
(AC010550) Homo sapiens chromosome 16 clone RP11-550L9, WORK...    44   5.7    1
(ER366311) 1093022035555 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.7    1
(ER362720) 1093017965722 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.7    1
(ER352769) 1092347051522 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.7    1
(EK001764) 1093025534781 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.7    1
(EJ597780) 1092961108038 Global-Ocean-Sampling_GS-29-01-01-1...    44   5.7    1
(EJ526731) 1092955189893 Global-Ocean-Sampling_GS-29-01-01-1...    44   5.7    1
(EJ303348) 1095390050627 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.7    1
(EJ298101) 1095388059507 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.7    1
(EJ258329) 1095349023411 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.7    1
(EG700907) RCTB286TP Castor bean cDNA library from seeds (40...    44   5.7    1
(EG674558) RCRD607TP Castor bean cDNA library from roots, 1....    44   5.7    1
(EG669045) RCRCA54TP Castor bean cDNA library from roots, 1....    44   5.7    1
(AM770836) Zostera marina EST, 5'-end sequence, meristematic...    44   5.7    1
(AM768772) Zostera marina EST, 5'-end sequence, meristematic...    44   5.7    1
(CX933985) JGI_CAAO3565.fwd NIH_XGC_tropTe5 Xenopus (Siluran...    44   5.7    1
(CF441843) EST678188 normalized cDNA library of onion Allium...    44   5.7    1
(CF407193) CH3#046_H07T7 Canine heart normalized cDNA Librar...    44   5.7    1
(BY657566) Mus musculus visual cortex cDNA, RIKEN full-lengt...    44   5.7    1
(FC822552) ZMD18012 ZM_D Zostera marina cDNA clone ZMD18012 ...    44   5.7    1
(CA901091) PCSC14592 Scarlet Runner Bean Suspensor Region Tr...    40   6.3    2
(ET899554) CHO_OF141xa06r1.ab1 CHO_OF Nicotiana tabacum geno...    40   7.6    2
(AL133224) Human chromosome 14 DNA sequence BAC R-16G17 of l...    38   7.6    6
(FC736973) CBBH1943.fwd CBBH Lottia gigantea 26h,37h,61h Lar...    30   7.6    3
(AE000782) Archaeoglobus fulgidus DSM 4304, complete genome.       32   8.5    2
(BY976878) Physcomitrella patens subsp. patens cDNA clone: P...    38   8.6    2
(FC681636) CAXX15562.fwd CAXX Lottia gigantea from male gona...    30   9.1    3
(AC113207) Mus musculus chromosome 10, clone RP23-323O18, co...    38   9.3    2
(CF882781) tric087xd15.b1 T.reesei mycelial culture, Version...    40   9.4    2

>(BJ361647) Dictyostelium discoideum cDNA clone:ddc18k06, 5' end,
           single read.
          Length = 596

 Score = 1033 bits (521), Expect = 0.0
 Identities = 521/521 (100%)
 Strand = Plus / Plus


Query: 76  gttctttttcgttagaggacaagattcatcatcaactatctcctcctcctcggtctcttc 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  gttctttttcgttagaggacaagattcatcatcaactatctcctcctcctcggtctcttc 135


Query: 136 ctcttcagtgccttcctcttcatccgaatctttcaatggtcaatatatattctcttttac 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ctcttcagtgccttcctcttcatccgaatctttcaatggtcaatatatattctcttttac 195


Query: 196 agaagcctatactttaatggcaattgatattagtaatggtaacttggttgttaaccattc 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agaagcctatactttaatggcaattgatattagtaatggtaacttggttgttaaccattc 255


Query: 256 cttaagtgaattgattcttccttcctctattttatcatatgatccaactacatactcctt 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cttaagtgaattgattcttccttcctctattttatcatatgatccaactacatactcctt 315


Query: 316 cagattttttggatattatgaacaatatccaggttatcatttcctattgtcaaactatag 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cagattttttggatattatgaacaatatccaggttatcatttcctattgtcaaactatag 375


Query: 376 tttaacaactaatacattcactgctattactagttcaattctagattcattgtactactc 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tttaacaactaatacattcactgctattactagttcaattctagattcattgtactactc 435


Query: 436 ttatgctattcaaccatatgtccaaatcggaactactttctacatgccaatttttgatga 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttatgctattcaaccatatgtccaaatcggaactactttctacatgccaatttttgatga 495


Query: 496 tgcaaagccttcaaccgatttaaacattagaaattgggattttaataactttattgtagg 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgcaaagccttcaaccgatttaaacattagaaattgggattttaataactttattgtagg 555


Query: 556 tactttagaaattgaattaccagattttaatgcatcaatca 596
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tactttagaaattgaattaccagattttaatgcatcaatca 596

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 619,748,116
Number of extensions: 37390485
Number of successful extensions: 3143503
Number of sequences better than 10.0: 100
Length of query: 605
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 582
Effective length of database: 93,106,754,628
Effective search space: 54188131193496
Effective search space used: 54188131193496
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08256-1 (Contig-U08256-1Q) /CSM_Contig/Contig-U08256-1Q.Seq.d
         (605 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P33892) RecName: Full=Translational activator GCN1;  &A48126(A4...    33   6.1

>(P33892) RecName: Full=Translational activator GCN1;
            &A48126(A48126;S62050;S64212) &L12467_1(L12467|pid:none)
            &X91837_6(X91837|pid:none) &Z72717_1(Z72717|pid:none)
          Length = 2672

 Score = 33.1 bits (74), Expect = 6.1
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +2

Query: 359  LLSNYSLTTNTFTAITSSILDSLYYSYAIQPYVQIGTTFYMPIFDDAKPSTDLNIRNWDF 538
            +LSN  L+ N F  + S+IL++L   + ++P+++     ++  FD    + ++    W+F
Sbjct: 1039 ILSNL-LSPNQF--VRSTILETLDNEFELEPFMKYSPEVFICRFDSDPSNREIADFIWEF 1095

Query: 539  NNFIVG--TLEIELPDFN 586
            N F+V    L+   P FN
Sbjct: 1096 NKFVVNDELLKSLFPLFN 1113

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 829,501,169
Number of extensions: 15549626
Number of successful extensions: 33564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33557
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 79
Effective length of database: 650,044,009
Effective search space: 51353476711
Effective search space used: 51353476711
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 1.02  gvh: 0.83  alm: 0.41  top: 0.33  tms: 0.00  mit: 0.32  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic

>> prediction for Contig-U08256-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0