| Contig-U08227-1 |
| Contig ID |
Contig-U08227-1 |
| Contig update |
2002. 5. 9 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1211 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
4702179 |
| End point |
4703390 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U08227 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.12 |
| Homology vs DNA |
Query= Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Contig-U08227-1Q.Seq.d
(1211 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AY392443) Dictyostelium discoideum possible endotoxin gene,... 1497 0.0 1
(AU060145) Dictyostelium discoideum slug cDNA, clone SLA429. 1350 0.0 1
(C25565) Dictyostelium discoideum slug cDNA, clone SLA429. 753 0.0 2
(BJ374789) Dictyostelium discoideum cDNA clone:ddc16e08, 3' ... 507 e-163 2
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 44 5e-07 12
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 42 4e-06 13
(AY392439) Dictyostelium discoideum P-selectin gene, complet... 40 4e-06 6
(AY217738) Eimeria tenella apicoplast, complete genome. 38 7e-06 7
(BJ376382) Dictyostelium discoideum cDNA clone:ddc28e12, 3' ... 40 2e-05 4
(BJ374930) Dictyostelium discoideum cDNA clone:ddc16g21, 3' ... 40 2e-05 4
(BJ341005) Dictyostelium discoideum cDNA clone:dda4b24, 3' e... 40 3e-05 4
(BJ346803) Dictyostelium discoideum cDNA clone:dda25i02, 3' ... 40 3e-05 4
(BJ376004) Dictyostelium discoideum cDNA clone:ddc20g20, 3' ... 40 3e-05 4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 5e-05 17
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 40 6e-05 10
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 36 2e-04 14
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 4e-04 16
(X06424) Yeast mit DNA for promoter upstream of tRNA-Leu gen... 38 0.001 3
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 38 0.001 18
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 34 0.003 15
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.006 10
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 0.006 14
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 30 0.007 13
(AC116987) Dictyostelium discoideum chromosome 2 map 3527441... 34 0.008 8
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 38 0.008 10
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 36 0.009 8
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 0.011 13
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 0.012 13
(AM285304) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.012 16
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.015 12
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 32 0.022 16
(AL035475) Plasmodium falciparum MAL4P2. 36 0.023 14
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.025 12
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 38 0.029 16
(EJ423680) 1093012249679 Global-Ocean-Sampling_GS-28-01-01-1... 32 0.039 5
(BD428873) Method and nucleic acids for pharmacogenomic meth... 42 0.045 4
(AX348352) Sequence 47 from Patent WO0202806. 42 0.045 4
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 34 0.048 14
(EC820860) SME00006707 esmbsro2 Sawyeria marylandensis cDNA,... 52 0.050 1
(EC819110) SME00006182 esmbsro2 Sawyeria marylandensis cDNA,... 52 0.050 1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 0.051 16
(AC013488) Homo sapiens chromosome 11, clone RP11-407P18, co... 48 0.052 5
(CT737314) Pig DNA sequence from clone CH242-142H17 on chrom... 36 0.056 7
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 32 0.058 11
(EJ708215) 1092956062455 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.063 2
(CP000727) Clostridium botulinum A str. Hall, complete genome. 34 0.066 15
(AM484490) Vitis vinifera contig VV78X072070.10, whole genom... 50 0.066 2
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.066 12
(EJ699552) 1092956030740 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.067 2
(AF335994) Lepidopsocid RS-2001 mitochondrion, complete genome. 44 0.067 4
(BX255881) Zebrafish DNA sequence from clone CH211-268E23 in... 34 0.077 9
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 36 0.077 11
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 34 0.078 17
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 36 0.081 7
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 0.083 15
(AC202365) Medicago truncatula clone mth2-65l6, WORKING DRAF... 36 0.088 11
(AC187008) Canis Familiaris chromosome 6, clone XX-163J21, c... 42 0.089 8
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 42 0.090 14
(AM475128) Vitis vinifera, whole genome shotgun sequence, co... 42 0.10 3
(DD194611) Method and nucleic acids for the analysis of a co... 36 0.11 7
(DD194609) Method and nucleic acids for the analysis of a co... 36 0.11 7
(AX825171) Sequence 5 from Patent WO03072812. 36 0.11 7
(AX825169) Sequence 3 from Patent WO03072812. 36 0.11 7
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.12 14
(AM608692) Entamoeba invadens IP1 GSS, clone inv094a05.q1k. 34 0.13 3
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.14 10
(AC108695) Homo sapiens 3 BAC RP11-744C8 (Roswell Park Cance... 36 0.14 8
(BX088545) Zebrafish DNA sequence from clone DKEY-60G19 in l... 32 0.15 8
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 42 0.15 10
(AX346316) Sequence 1387 from Patent WO0200928. 36 0.16 5
(AE017263) Mesoplasma florum L1 complete genome. 36 0.16 16
(BD453025) Diagnosis of Diseases Associated with tumor suppr... 36 0.17 8
(AX344503) Sequence 350 from Patent WO0200926. 36 0.17 8
(AX251504) Sequence 472 from Patent WO0168912. 36 0.17 8
(AX346884) Sequence 1955 from Patent WO0200928. 32 0.17 5
(AL844509) Plasmodium falciparum chromosome 13. 40 0.17 9
(CU302270) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.17 8
(AY376688) Crinipellis perniciosa mitochondrion, complete ge... 40 0.17 7
(AL110479) Caenorhabditis elegans YAC Y105C5B. 38 0.17 13
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 34 0.18 7
(AX348900) Sequence 358 from Patent WO0202807. 38 0.18 3
(AX344491) Sequence 338 from Patent WO0200926. 38 0.18 3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 34 0.19 10
(AC115584) Dictyostelium discoideum chromosome 2 map complem... 34 0.19 7
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 36 0.21 10
(AC217474) Neofelis nebulosa clone CH87-139H23, WORKING DRAF... 42 0.21 8
(CR352217) Zebrafish DNA sequence from clone CH211-129P13 in... 36 0.22 9
(AG305774) Mus musculus molossinus DNA, clone:MSMg01-086H13.... 40 0.24 2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 0.26 13
(AY232273) Dictyostelium discoideum putative protein Roco11 ... 36 0.27 3
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 0.28 9
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 32 0.28 10
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.30 8
(DQ832717) Phytophthora sojae mitochondrion, complete genome. 32 0.30 8
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.31 12
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 38 0.33 9
(EJ061520) 1095456068855 Global-Ocean-Sampling_GS-26-01-01-1... 36 0.36 3
(AU037305) Dictyostelium discoideum slug cDNA, clone SSB740. 32 0.38 3
(AU051921) Dictyostelium discoideum slug cDNA, clone SSC402. 32 0.38 3
(AC150979) Medicago truncatula clone mth2-115a17, complete s... 36 0.38 8
>(AY392443) Dictyostelium discoideum possible endotoxin gene, complete
cds.
Length = 3100
Score = 1497 bits (755), Expect = 0.0
Identities = 764/767 (99%)
Strand = Plus / Plus
Query: 1 gtccatttgggtatccatatatattcaatttagatactaaatcaacgaatggtagtggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1608 gtccatttgggtatccatatatattcaatttagatactaaatcaacgaatggtagtggta 1667
Query: 61 gtggagaagcaacaattgaaattaaaaataaaatctatggtgaaattttaaataatggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1668 gtggagaagcaacaattgaaattaaaaataaaatctatggtgaaattttaaataatggtg 1727
Query: 121 gaggttttacaacattttataaaatttatcaatatgcaccaattcataattatttataca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1728 gaggttttacaacattttataaaatttatcaatatgcaccaattcataattatttataca 1787
Query: 181 ttacattctatcaaagtggtagtaacatttttgcaatttatgatcaaactacatcaagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1788 ttacattctatcaaagtggtagtaacatttttgcaatttatgatcaaactacatcaagta 1847
Query: 241 ttaaacaagtgttaaatatttggggtgtcccattcactattggttttaataaagatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1848 ttaaacaagtgttaaatatttggggtgtcccattcactattggttttaataaagatgaaa 1907
Query: 301 gtaaaactgtttatggtgaatatggaattttcttaattaatggtattccaagccaaaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1908 gtaaaactgtttatggtgaatatggaattttcttaattaatggtattccaagccaaaaat 1967
Query: 361 ctgatttctcaaattcaacactcctctacaagaatcaaattaccaatgcaattatattgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1968 ctgatttctcaaattcaacactcctctacaagaatcaaattaccaatgcaattatattgc 2027
Query: 421 aagataatgatatctacatatcaacttatgatggtaaattttatttaggttcaactaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2028 aagataatgatatctacatatcaacttatgatggtaaattttatttaggttcaactaatt 2087
Query: 481 gtagaaattgttcaagtgataaattaaaattattattcactgataataattccacaacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2088 gtagaaattgttcaagtgataaattaaaattattattcactgataataattccacaacaa 2147
Query: 541 atagtggattctttaaaattaatgatatgatttattattcaaatgaaaatggtattagag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2148 atagtggattctttaaaattaatgatatgatttattattcaaatgaaaatggtattagag 2207
Query: 601 cattctcaattaataattcatcatcaacaatggcaccaataattttaacaaatgatagta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2208 cattctcaattaataattcatcatcaacaatggcaccaataattttaacaaatgatagta 2267
Query: 661 tttcatcgatgacaactgatggtaaaaatatttattatattattactggttcaacaggtt 720
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 2268 tttcatcgatgacaactgatggtaaaaatatttattatattataaaaggttcaacaggtt 2327
Query: 721 catcatttacaaataatgcagtagttaaatcaatttcaattttaaaa 767
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2328 catcatttacaaataatgcagtagttaaatcaatttcaattttaaaa 2374
Score = 729 bits (368), Expect = 0.0
Identities = 377/380 (99%)
Strand = Plus / Plus
Query: 832 attcaaaaccaatggttatatataccccaaaatcaaataatcaatgtcaatgtgcagttg 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2541 attcaaaaccaatggttatatataccccaaaatcaaataatcaatgtcaatgtgcagttg 2600
Query: 892 gtttcaaaggtgataaatgtgaaacttgtgatggtaaaacactatggaataatggtattc 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2601 gtttcaaaggtgataaatgtgaaacttgtgatggtaaaacactatggaataatggtattc 2660
Query: 952 ctttatgcactccaattgataatgaaacaggttatcctaaaacatgtttcacccctcaag 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2661 ctttatgcactccaattgataatgaaacaggttatcctaaaacatgtttcacccctcaag 2720
Query: 1012 attgctcaactagtcaatttgtattctataaaagtacatgtagttgtttgcctggcttta 1071
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 2721 attgctcaactagtcaatttgtattctgtaatggtacatgtagttgtttgcctggcttta 2780
Query: 1072 ctcaatcaaagaatgattgtatttgttcaaaccctggttcagttatttggacaaatggtt 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2781 ctcaatcaaagaatgattgtatttgttcaaaccctggttcagttatttggacaaatggtt 2840
Query: 1132 atccaacttgttttgttgatccaaattaaacacccctcctcccctttatatattaaataa 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2841 atccaacttgttttgttgatccaaattaaacacccctcctcccctttatatattaaataa 2900
Query: 1192 ataaatagtttacacccaaa 1211
||||||||||||||||||||
Sbjct: 2901 ataaatagtttacacccaaa 2920
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,687,859,649
Number of extensions: 116943210
Number of successful extensions: 13182975
Number of sequences better than 10.0: 544
Length of query: 1211
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1187
Effective length of database: 97,308,875,965
Effective search space: 115505635770455
Effective search space used: 115505635770455
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.24 |
| Homology vs Protein |
Query= Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Contig-U08227-1Q.Seq.d
(1211 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY392438_1(AY392438|pid:none) Dictyostelium discoideum tenascin ... 266 8e-70
AC116955_5(AC116955|pid:none) Dictyostelium discoideum chromosom... 132 3e-29
(Q9HBW9) RecName: Full=EGF, latrophilin and seven transmembrane ... 44 0.015
AY845260_1(AY845260|pid:none) Mytilus edulis clone 2 foot protei... 44 0.015
AB032017_1(AB032017|pid:none) Homo sapiens mRNA for KPG_003 prot... 44 0.015
AX365286_1(AX365286|pid:none) Sequence 1 from Patent WO0202602. ... 44 0.015
EU273942_1(EU273942|pid:none) Amphimedon queenslandica notch mRN... 44 0.015
AK159416_1(AK159416|pid:none) Mus musculus osteoclast-like cell ... 43 0.026
AK149309_1(AK149309|pid:none) Mus musculus adult retina cDNA, RI... 43 0.026
(Q8R4Y4) RecName: Full=Stabilin-1; AltName: Full=Fasciclin, EGF-... 43 0.026
BC123530_1(BC123530|pid:none) Bos taurus EGF, latrophilin and se... 42 0.033
CP000102_143(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 42 0.057
AK014693_1(AK014693|pid:none) Mus musculus 0 day neonate head cD... 42 0.057
(A2AVA0) RecName: Full=Sushi, von Willebrand factor type A, EGF ... 42 0.057
DQ917570_1(DQ917570|pid:none) Parhyale hawaiensis delta protein ... 42 0.057
DQ917572_1(DQ917572|pid:none) Parhyale hawaiensis notch protein ... 41 0.074
CR759893_1(CR759893|pid:none) Zebrafish DNA sequence from clone ... 40 0.13
U28735_9(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, c... 40 0.13
AF163766_1(AF163766|pid:none) Sus scrofa P-selectin precursor, m... 40 0.13
U28735_10(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, ... 40 0.13
AY504865_1(AY504865|pid:none) Leuconostoc mesenteroides strain I... 40 0.13
CT025750_1(CT025750|pid:none) Zebrafish DNA sequence from clone ... 40 0.17
AF307970_1(AF307970|pid:none) Odocoileus hemionus E-selectin mRN... 40 0.17
Y10354_1(Y10354|pid:none) D.rerio notch6 mRNA. 40 0.17
AC117076_28(AC117076|pid:none) Dictyostelium discoideum chromoso... 40 0.17
(Q25464) RecName: Full=Adhesive plaque matrix protein 2; AltName... 40 0.22
AX058620_1(AX058620|pid:none) Sequence 27 from Patent WO0075321.... 40 0.22
AP009247_151(AP009247|pid:none) Candidatus Vesicomyosocius okuta... 40 0.22
AX239635_1(AX239635|pid:none) Sequence 1 from Patent WO0164882. 40 0.22
(Q01102) RecName: Full=P-selectin; AltName: Full=Granule membran... 39 0.28
AE014188_393(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.28
BC156301_1(BC156301|pid:none) Synthetic construct Mus musculus c... 39 0.28
M72332_1(M72332|pid:none) Mus musculus granule membrane protein ... 39 0.28
L33862_1(L33862|pid:none) Sea urchin fibropellin III mRNA, 3' end. 39 0.37
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 39 0.48
AE001437_1066(AE001437|pid:none) Clostridium acetobutylicum ATCC... 39 0.48
BX927239_21(BX927239|pid:none) Human DNA sequence from clone DAM... 39 0.48
CR933878_21(CR933878|pid:none) Human DNA sequence from clone DAM... 39 0.48
L33861_1(L33861|pid:none) Sea urchin fibropellin Ia mRNA, 3' end. 39 0.48
AL662830_12(AL662830|pid:none) Human DNA sequence from clone XXb... 39 0.48
AC117075_80(AC117075|pid:none) Dictyostelium discoideum chromoso... 39 0.48
CP001217_912(CP001217|pid:none) Helicobacter pylori P12, complet... 38 0.63
BX538049_1(BX538049|pid:none) Homo sapiens mRNA; cDNA DKFZp686L1... 38 0.63
AL158158_6(AL158158|pid:none) Human DNA sequence from clone RP11... 38 0.63
AK299367_1(AK299367|pid:none) Homo sapiens cDNA FLJ52406 complet... 38 0.63
AJ275213_1(AJ275213|pid:none) Homo sapiens mRNA for stabilin-1 (... 38 0.63
AB052956_1(AB052956|pid:none) Homo sapiens mRNA for FELE-1, comp... 38 0.63
AL158158_5(AL158158|pid:none) Human DNA sequence from clone RP11... 38 0.63
CP001078_2201(CP001078|pid:none) Clostridium botulinum E3 str. A... 38 0.63
(Q6DI48) RecName: Full=Delta-like protein A; Short=Delt... 38 0.63
(P25391) RecName: Full=Laminin subunit alpha-1; Short=L... 38 0.63
AY509881_1(AY509881|pid:none) Equus caballus P-selectin mRNA, co... 38 0.63
BX537918_1(BX537918|pid:none) Homo sapiens mRNA; cDNA DKFZp686I1... 38 0.63
AE014186_398(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.63
CU458989_1(CU458989|pid:none) Danio rerio cDNA, clone cssl:d0399. 38 0.63
DQ786774_1(DQ786774|pid:none) Homo sapiens FEX1 mRNA, complete c... 38 0.63
AK302826_1(AK302826|pid:none) Homo sapiens cDNA FLJ54394 complet... 38 0.82
(P82279) RecName: Full=Crumbs homolog 1; Flags: Precursor; &AL1... 38 0.82
AF154671_1(AF154671|pid:none) Homo sapiens CRB1 mRNA, complete c... 38 0.82
AK299368_1(AK299368|pid:none) Homo sapiens cDNA FLJ61360 complet... 38 0.82
AL035436_2(AL035436|pid:none) Drosophila melanogaster cosmid clo... 38 0.82
CP001037_4232(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 38 0.82
M16152_1(M16152|pid:none) Drosophila melanogaster Notch growth f... 38 0.82
AE014188_267(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 37 1.1
CP001219_1060(CP001219|pid:none) Acidithiobacillus ferrooxidans ... 37 1.1
AL645750_1(AL645750|pid:none) Zebrafish DNA sequence from clone ... 37 1.1
AY805407_1(AY805407|pid:none) Danio rerio notch1b mRNA, complete... 37 1.1
X58531_1(X58531|pid:none) Human LAMA mRNA for laminin A chain, p... 37 1.1
AF307971_1(AF307971|pid:none) Ovis aries E-selectin mRNA, comple... 37 1.1
CP001185_1128(CP001185|pid:none) Thermosipho africanus TCF52B, c... 37 1.1
BC101919_1(BC101919|pid:none) Rattus norvegicus selectin, platel... 37 1.4
U89335_1(U89335|pid:none) Homo sapiens chromosome 6 notch4 (NOTC... 37 1.4
AE014299_3004(AE014299|pid:none) Shewanella oneidensis MR-1, com... 37 1.4
AK290785_1(AK290785|pid:none) Homo sapiens cDNA FLJ77085 complet... 37 1.4
(P98106) RecName: Full=P-selectin; AltName: Full=Granule membran... 37 1.4
CP001106_425(CP001106|pid:none) Eubacterium eligens ATCC 27750 p... 37 1.4
AF308289_1(AF308289|pid:none) Homo sapiens serologically defined... 37 1.4
AB023961_1(AB023961|pid:none) Homo sapiens NOTCH4 gene, exon 1 t... 37 1.4
A35844(A35844)Xotch protein - African clawed frog 37 1.4
(P21783) RecName: Full=Neurogenic locus notch protein homolog; ... 37 1.4
AK075234_1(AK075234|pid:none) Homo sapiens cDNA FLJ90753 fis, cl... 37 1.4
(Q60675) RecName: Full=Laminin subunit alpha-2; AltName: Full=La... 37 1.4
BC172647_1(BC172647|pid:none) Synthetic construct Mus musculus c... 37 1.4
(Q6NM73) RecName: Full=Cysteine-rich repeat secretory protein 3;... 37 1.8
DQ227275_1(DQ227275|pid:none) Canis familiaris EMR1 mRNA, comple... 37 1.8
A48825(A48825)Notch homolog Motch protein - mouse (fragment) 37 1.8
AE000511_906(AE000511|pid:none) Helicobacter pylori 26695, compl... 37 1.8
EU286859_1(EU286859|pid:none) Plasmodium falciparum isolate B111... 37 1.8
CR940353_287(CR940353|pid:none) Theileria annulata strain Ankara... 36 2.4
AX817295_1(AX817295|pid:none) Sequence 43 from Patent WO02081517. 36 2.4
CP001071_678(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 36 2.4
AE014134_2530(AE014134|pid:none) Drosophila melanogaster chromos... 36 2.4
AY647435_1(AY647435|pid:none) Siniperca chuatsi selectin P mRNA,... 36 2.4
AX817297_1(AX817297|pid:none) Sequence 45 from Patent WO02081517. 36 2.4
AC115594_6(AC115594|pid:none) Dictyostelium discoideum chromosom... 36 2.4
AC114263_28(AC114263|pid:none) Dictyostelium discoideum chromoso... 36 2.4
CU459119_1(CU459119|pid:none) Zebrafish DNA sequence from clone ... 36 2.4
CP001173_849(CP001173|pid:none) Helicobacter pylori G27, complet... 36 3.1
AF250284_103(AF250284|pid:none) Amsacta moorei entomopoxvirus, c... 36 3.1
AL034557_45(AL034557|pid:none) Plasmodium falciparum MAL4P1. &A... 36 3.1
AB209873_1(AB209873|pid:none) Homo sapiens mRNA for notch1 prepr... 36 3.1
(Q8R4F1) RecName: Full=Netrin-G2; AltName: Full=Laminet-2; Flags... 36 3.1
(Q9P273) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 36 3.1
AF308602_1(AF308602|pid:none) Homo sapiens NOTCH 1 (N1) mRNA, co... 36 3.1
CP000653_3355(CP000653|pid:none) Enterobacter sp. 638, complete ... 36 3.1
AB052336_1(AB052336|pid:none) Mus musculus mRNA for Netrin-G2a, ... 36 3.1
(P49013) RecName: Full=Fibropellin-3; AltName: Full=Fibropellin ... 36 3.1
CU928170_81(CU928170|pid:none) Kluyveromyces thermotolerans stra... 36 3.1
(Q95LG1) RecName: Full=E-selectin; AltName: Full=Endothelial leu... 36 3.1
(P46531) RecName: Full=Neurogenic locus notch homolog protein 1;... 36 3.1
AB052337_1(AB052337|pid:none) Mus musculus mRNA for Netrin-G2b, ... 36 3.1
CP001341_3338(CP001341|pid:none) Arthrobacter chlorophenolicus A... 36 3.1
BX681417_79(BX681417|pid:none) Zebrafish DNA sequence from clone... 36 3.1
EF587492_1(EF587492|pid:none) Chlamydomonas moewusii strain UTEX... 36 3.1
AL844508_66(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 36 3.1
BA000026_89(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, co... 36 3.1
AY261899_1(AY261899|pid:none) Ciona intestinalis polydomain prot... 35 4.1
AL596139_3(AL596139|pid:none) BAC A of library A from Tetraodon ... 35 4.1
CP001022_1963(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 35 4.1
FJ222590_1(FJ222590|pid:none) Periplaneta americana Delta protei... 35 4.1
AB174356_1(AB174356|pid:none) Macaca fascicularis brain cDNA clo... 35 4.1
(Q8EUL1) RecName: Full=UvrABC system protein A; Short=U... 35 4.1
(P33730) RecName: Full=E-selectin; AltName: Full=Endothelial leu... 35 4.1
AY850231_1(AY850231|pid:none) Mannheimia haemolytica transferrin... 35 4.1
AF287257_1(AF287257|pid:none) Canis familiaris E-selectin gene, ... 35 4.1
(Q04721) RecName: Full=Neurogenic locus notch homolog protein 2;... 35 4.1
AF308601_1(AF308601|pid:none) Homo sapiens NOTCH 2 (N2) mRNA, co... 35 4.1
AX357059_1(AX357059|pid:none) Sequence 21 from Patent EP1175909.... 35 4.1
CP000139_4004(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 35 4.1
CR380955_276(CR380955|pid:none) Candida glabrata strain CBS138 c... 35 4.1
U66796_1(U66796|pid:none) Human laminin alpha 2 chain (LAMA2) ge... 35 5.3
AX045097_1(AX045097|pid:none) Sequence 5 from Patent WO0066730. ... 35 5.3
BX323857_1(BX323857|pid:none) Mouse DNA sequence from clone RP23... 35 5.3
CP000361_2048(CP000361|pid:none) Arcobacter butzleri RM4018, com... 35 5.3
AE014297_4237(AE014297|pid:none) Drosophila melanogaster chromos... 35 5.3
(Q05793) RecName: Full=Basement membrane-specific heparan sulfat... 35 5.3
(P24043) RecName: Full=Laminin subunit alpha-2; AltName: Full=La... 35 5.3
AL844509_369(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 35 5.3
(Q8CFM6) RecName: Full=Stabilin-2; AltName: Full=Fasciclin, EGF-... 35 5.3
CR456624_1(CR456624|pid:none) Zebrafish DNA sequence from clone ... 35 5.3
AX045099_1(AX045099|pid:none) Sequence 7 from Patent WO0066730. 35 5.3
AB072758_1(AB072758|pid:none) Macaca fascicularis testis cDNA cl... 35 5.3
AE014134_308(AE014134|pid:none) Drosophila melanogaster chromoso... 35 6.9
(Q1LVF0) RecName: Full=Laminin subunit gamma-1; Flags: Precursor... 35 6.9
AE009948_455(AE009948|pid:none) Streptococcus agalactiae 2603V/R... 35 6.9
AE013599_2241(AE013599|pid:none) Drosophila melanogaster chromos... 35 6.9
L42229_1(L42229|pid:none) Xenopus laevis X-Delta-1 gene, complet... 35 6.9
AF468048_1(AF468048|pid:none) Danio rerio laminin gamma 1 (lamc1... 35 6.9
BC156248_1(BC156248|pid:none) Synthetic construct Homo sapiens c... 35 6.9
I46709(I46709;I46708) endothelial leukocyte adhesion molecule 1 ... 35 6.9
(P24014) RecName: Full=Protein slit; Short=dSlit; Conta... 35 6.9
AF315556_1(AF315556|pid:none) Caenorhabditis remanei notch-like ... 35 6.9
AB109024_1(AB109024|pid:none) Gallus gallus CREG mRNA for comple... 35 6.9
BC145886_1(BC145886|pid:none) Mus musculus sushi, nidogen and EG... 35 6.9
AC079634_16(AC079634|pid:none) Genomic Sequence for Oryza sativa... 35 6.9
AY960620_1(AY960620|pid:none) Phragmatopoma californica cement p... 35 6.9
EU286850_1(EU286850|pid:none) Plasmodium falciparum isolate AF3 ... 35 6.9
CR954216_234(CR954216|pid:none) Ostreococcus tauri strain OTTH05... 35 6.9
CU466930_1639(CU466930|pid:none) Candidatus Cloacamonas acidamin... 35 6.9
AP009486_65(AP009486|pid:none) Macrococcus caseolyticus JCSC5402... 35 6.9
AF195418_1(AF195418|pid:none) Mus musculus ODZ3 (Odz3) mRNA, par... 35 6.9
AL110498_8(AL110498|pid:none) Caenorhabditis elegans YAC Y64G10A... 35 6.9
AE014134_309(AE014134|pid:none) Drosophila melanogaster chromoso... 35 6.9
CP000777_2644(CP000777|pid:none) Leptospira biflexa serovar Pato... 35 6.9
(Q8N2E2) RecName: Full=Von Willebrand factor D and EGF domain-co... 35 6.9
(Q70E20) RecName: Full=Sushi, nidogen and EGF-like domain-contai... 35 6.9
AE010299_3927(AE010299|pid:none) Methanosarcina acetivorans str.... 35 6.9
AE009440_18(AE009440|pid:none) Chlamydophila pneumoniae TW-183, ... 35 6.9
AF126540_1(AF126540|pid:none) Drosophila melanogaster slit prote... 35 6.9
BC068426_1(BC068426|pid:none) Danio rerio laminin, gamma 1, mRNA... 35 6.9
(Q9H1U4) RecName: Full=Multiple epidermal growth factor-like dom... 35 6.9
A36665(A36665;A31640;S13523) slit protein 1 precursor - fruit fl... 35 6.9
M23543_1(M23543|pid:none) Drosophila melanogaster slit locus enc... 35 6.9
(Q9WTS6) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 35 6.9
T27283(T27283)hypothetical protein Y64G10A.f - Caenorhabditis el... 35 6.9
AX367152_1(AX367152|pid:none) Sequence 1 from Patent WO0204599. 35 6.9
AL445067_90(AL445067|pid:none) Thermoplasma acidophilum complete... 35 6.9
EU286891_1(EU286891|pid:none) Plasmodium falciparum isolate B91 ... 35 6.9
AE014188_356(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 35 6.9
AL844505_35(AL844505|pid:none) Plasmodium falciparum 3D7 chromos... 34 9.1
AF499438_1(AF499438|pid:none) Caenorhabditis briggsae notch-like... 34 9.1
(P02468) RecName: Full=Laminin subunit gamma-1; AltName: Full=La... 34 9.1
AL844509_552(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 34 9.1
(Q9WTS5) RecName: Full=Teneurin-2; Short=Ten-2; AltName... 34 9.1
AX045119_1(AX045119|pid:none) Sequence 27 from Patent WO0066730. 34 9.1
CP001357_1791(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 34 9.1
AX045117_1(AX045117|pid:none) Sequence 25 from Patent WO0066730. 34 9.1
BC165945_1(BC165945|pid:none) Synthetic construct Mus musculus c... 34 9.1
AM180355_2789(AM180355|pid:none) Clostridium difficile 630 compl... 34 9.1
AY971355_1(AY971355|pid:none) Brachyspira hyodysenteriae Trep (t... 34 9.1
AX045123_1(AX045123|pid:none) Sequence 31 from Patent WO0066730.... 34 9.1
AB385108_1(AB385108|pid:none) Synthetic construct DNA, clone: pF... 34 9.1
BC084953_1(BC084953|pid:none) Xenopus laevis X-Serrate-1 protein... 34 9.1
AF492700_1(AF492700|pid:none) Caenorhabditis elegans strain DR13... 34 9.1
DQ314737_1(DQ314737|pid:none) Danio rerio crumbs-like protein 2b... 34 9.1
(Q6V0I7) RecName: Full=Protocadherin Fat 4; Short=hFat4... 34 9.1
AY356402_1(AY356402|pid:none) Homo sapiens fat-like cadherin FAT... 34 9.1
FJ406948_1(FJ406948|pid:none) Plasmodium reichenowi isolate CDC-... 34 9.1
BC160988_1(BC160988|pid:none) Xenopus tropicalis hypothetical pr... 34 9.1
AY504965_1(AY504965|pid:none) Entamoeba histolytica topoisomeras... 34 9.1
AE015929_1138(AE015929|pid:none) Staphylococcus epidermidis ATCC... 34 9.1
AX045121_1(AX045121|pid:none) Sequence 29 from Patent WO0066730.... 34 9.1
FJ006932_1(FJ006932|pid:none) Brachyspira hyodysenteriae strain ... 34 9.1
AL032657_4(AL032657|pid:none) Caenorhabditis elegans YAC Y47H9C,... 34 9.1
>AY392438_1(AY392438|pid:none) Dictyostelium discoideum tenascin X
gene, complete cds.
Length = 426
Score = 266 bits (681), Expect = 8e-70
Identities = 149/390 (38%), Positives = 225/390 (57%), Gaps = 9/390 (2%)
Frame = +3
Query: 6 FGYPYIFNLDTKSTNGSGSGEATIEIKNKIYGEILNNGGGFTTFYKIYQYAPIHNYLYIT 185
FG P IF++ + SG + + I GEIL+ G G+T Y+Y P + Y+
Sbjct: 72 FGLPSIFSVPS-------SGGCQLSKRFDIQGEILD-GPGYTALDYFYKYLPQLDRYYVR 123
Query: 186 FYQSGSNIFAIYDQTTSSIKQVLNIWGVPFTIGFNKDESKT--VYGEYGIFLINGIPSQK 359
F Q GS IF+IY+QT++ IK V NI+ PF F+++ES VYG YGI+ + P+ +
Sbjct: 124 FNQRGSPIFSIYNQTSNEIKAVFNIFNTPFVPAFSQNESAPFFVYGGYGIYGLAKYPTDR 183
Query: 360 SDFSNSTLLYKNQITNAIILQDNDIYISTYDGKFYLGSTNCRNCSSDKLKLLFTDN---N 530
SD + L+Y++QI N + + + +Y++TY G+F GS NC NC+ D+L+LL TD+ +
Sbjct: 184 SDAQQAKLIYQSQIVNGLEIDGDQLYMTTYQGQFLKGSLNCLNCTKDQLQLLVTDSELAS 243
Query: 531 STTNSGFFKINDMIYYSNENGIRAFSINNSSSTMAPIILTNDSISSMTTDGKNIYYIITG 710
+T+ SGF +D +Y+S GI+ + N +S + ++ ++++ +M ++G +YY
Sbjct: 244 ATSVSGFALTSDYMYFSYSGGIKGYPKNGDASRVRKLV--SENVVAMISNGDFLYY---- 297
Query: 711 STGSSFTNNAVVKSISILKXXXXXXXXXXXXXXXXXXXXXNSKPMVIYTPKSNNQCQCAV 890
T++ VVKS+S + + ++YTP S+NQCQC+V
Sbjct: 298 -----QTDSGVVKSVS--------------------TSGNHPQVNILYTPVSDNQCQCSV 332
Query: 891 GFKGDKCETCD-GKTLW--NNGIPLCTPIDNETGYPKTCFTPQDCSTSQFVFYKSTCSCL 1061
GF GD C CD G LW +NGIP+C+P+ N G PKTC+ C +S F+ TC+CL
Sbjct: 333 GFSGDDCRQCDNGMVLWASDNGIPMCSPL-NSLGKPKTCYAAYQCGSSPFIICNGTCTCL 391
Query: 1062 PGFTQSKNDC-ICSNPGSVIWTNGYPTCFV 1148
PGF S NDC +C N G VIW NGYPTC +
Sbjct: 392 PGF--SGNDCTLCGNGGEVIWENGYPTCVI 419
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,793,877,463
Number of extensions: 36537479
Number of successful extensions: 97434
Number of sequences better than 10.0: 204
Number of HSP's gapped: 96265
Number of HSP's successfully gapped: 225
Length of query: 403
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 272
Effective length of database: 621,205,444
Effective search space: 168967880768
Effective search space used: 168967880768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
1 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
1 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |