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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08217-1
Contig ID Contig-U08217-1
Contig update 2002. 5. 9
Contig sequence 
>Contig-U08217-1 (Contig-U08217-1Q) /CSM_Contig/Contig-U08217-1Q.Seq.d
ATCTATATATATGGTAATAAATTAAAAAAAAAAAAAAAAATTATTCCAGT
TTTTTTAAAGATTTTCCATCTTCAAAAATGAATTATTTATTTAATATTTT
TGAAGAAGAGAAACCAATTAAAAAAGCCCCCATTATAACAGAGGAATGTT
ATAGAAATGGATACCATCCGAGTAAATGGGAATTAGCACAAGTATTATTG
AATGGTATTTGGAAACCTTATAAATTCAAAAGTTATATGCAATATAAATC
AAGAGAACGTTTAAATTTACAAGCAGATACCCAATGTCCAGATGCAATAC
TATTGGATGACCAAACCAACCAAGAGGTATCATTATATGATTTATTTAAT
AGTAATAATAATGAAAAATCAGTGCAAGATAGACCAATGGTATTAATTTG
TGGTAGTTTCACCTGACCCCCATTCCGCGACAAGATGTGTATGTTTCAAG
ACATCTTTGTCGATTTTAAAGAGTGGGTTGATATTTATATTGTTTATTTG
AAAGAGATACATCCAGCTGATGAATGGTATATTGGTGGTGATGAAATTAG
TCTATGTTATCGTCAACCTAAAACAATGGAAGATAGAAGGGAAATAATCA
AAGATTTGAAAGAGTATGCTCCATTTTGTACAATTCCATTCTTAATTGAT
AAAATGGATAATAATTTCAATAAAGTTTATGACGCAGTTCCAGAAAGGTT
ATATGTTTTAGAAGATAAAAAATTCAAATATGTTGGTGGTCCCGGCCCAT
TNGGTTTCATNCCTGA
Gap no gap
Contig length 766
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5856956
End point 5857722
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U08217
List of clone(s) 

est1=SLA678F,1,670
est2=CFG196Z,94,697
est3=CFI167Z,188,767
Translated Amino Acid sequence 
lyiw**IKKKKKNYSSFFKDFPSSKMNYLFNIFEEEKPIKKAPIITEECYRNGYHPSKWE
LAQVLLNGIWKPYKFKSYMQYKSRERLNLQADTQCPDAILLDDQTNQEVSLYDLFNSNNN
EKSVQDRPMVLICGSFT*ppfrdkmcmfqdifvdfkewvdiyivylkeihpadewyiggd
eislcyrqpktmedrreiikdlkeyapfctipflidkmdnnfnkvydavperlyvledkk
fkyvggpgpxgfxp
Translated Amino Acid sequence (All Frames) 
Frame A:
iyiygnklkkkkkiipvflkifhlqk*iiyliflkkrnqlkkppl*qrnviemdtirvng
n*hkyy*mvfgnlinskvicninqenv*iykqipnvqmqyywmtkptkryhymiylivii
mknqckidqwy*fvvvspdphsatrcvcfktslsilksglifilfi*kryiqlmngilvv
mklvyvivnlkqwkiegk*ski*ksmlhfvqfhs*likwiiisikfmtqfqkgymf*kik
nsnmlvvpahxvsxl


Frame B:
siymvin*kkkkklfqff*rfsifknelfi*yf*rretn*ksphynrgml*kwipse*mg
istsiiewyletl*iqklyai*ikrtfkftsrypmsrcntig*pnqprgiii*fi*****
*kisar*tnginlw*fhltpiprqdvyvsrhlcrf*rvg*ylyclferdtss**mvyww*
*n*smlsst*nngr*kgnnqrfervcsilynsiln**ng**fq*sl*rssrkvicfrr*k
iqicwwsrpixfhx*


Frame C:
lyiw**IKKKKKNYSSFFKDFPSSKMNYLFNIFEEEKPIKKAPIITEECYRNGYHPSKWE
LAQVLLNGIWKPYKFKSYMQYKSRERLNLQADTQCPDAILLDDQTNQEVSLYDLFNSNNN
EKSVQDRPMVLICGSFT*ppfrdkmcmfqdifvdfkewvdiyivylkeihpadewyiggd
eislcyrqpktmedrreiikdlkeyapfctipflidkmdnnfnkvydavperlyvledkk
fkyvggpgpxgfxp
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08217-1 (Contig-U08217-1Q)
/CSM_Contig/Contig-U08217-1Q.Seq.d
         (766 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08217-1 (Contig-U08217-1Q) /CSM_Contig/Conti...  1396  0.0
Contig-U14682-1 (Contig-U14682-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11271-1 (Contig-U11271-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U11216-1 (Contig-U11216-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10146-1 (Contig-U10146-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U07997-1 (Contig-U07997-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U05215-1 (Contig-U05215-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14015-1 (Contig-U14015-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12105-1 (Contig-U12105-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U07089-1 (Contig-U07089-1Q) /CSM_Contig/Conti...    38  0.014

>Contig-U08217-1 (Contig-U08217-1Q) /CSM_Contig/Contig-U08217-1Q.Seq.d
          Length = 766

 Score = 1396 bits (704), Expect = 0.0
 Identities = 710/710 (100%)
 Strand = Plus / Plus

                                                                       
Query: 57  aaagattttccatcttcaaaaatgaattatttatttaatatttttgaagaagagaaacca 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  aaagattttccatcttcaaaaatgaattatttatttaatatttttgaagaagagaaacca 116

                                                                       
Query: 117 attaaaaaagcccccattataacagaggaatgttatagaaatggataccatccgagtaaa 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 attaaaaaagcccccattataacagaggaatgttatagaaatggataccatccgagtaaa 176

                                                                       
Query: 177 tgggaattagcacaagtattattgaatggtatttggaaaccttataaattcaaaagttat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgggaattagcacaagtattattgaatggtatttggaaaccttataaattcaaaagttat 236

                                                                       
Query: 237 atgcaatataaatcaagagaacgtttaaatttacaagcagatacccaatgtccagatgca 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 atgcaatataaatcaagagaacgtttaaatttacaagcagatacccaatgtccagatgca 296

                                                                       
Query: 297 atactattggatgaccaaaccaaccaagaggtatcattatatgatttatttaatagtaat 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 atactattggatgaccaaaccaaccaagaggtatcattatatgatttatttaatagtaat 356

                                                                       
Query: 357 aataatgaaaaatcagtgcaagatagaccaatggtattaatttgtggtagtttcacctga 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aataatgaaaaatcagtgcaagatagaccaatggtattaatttgtggtagtttcacctga 416

                                                                       
Query: 417 cccccattccgcgacaagatgtgtatgtttcaagacatctttgtcgattttaaagagtgg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 cccccattccgcgacaagatgtgtatgtttcaagacatctttgtcgattttaaagagtgg 476

                                                                       
Query: 477 gttgatatttatattgtttatttgaaagagatacatccagctgatgaatggtatattggt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gttgatatttatattgtttatttgaaagagatacatccagctgatgaatggtatattggt 536

                                                                       
Query: 537 ggtgatgaaattagtctatgttatcgtcaacctaaaacaatggaagatagaagggaaata 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 ggtgatgaaattagtctatgttatcgtcaacctaaaacaatggaagatagaagggaaata 596

                                                                       
Query: 597 atcaaagatttgaaagagtatgctccattttgtacaattccattcttaattgataaaatg 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atcaaagatttgaaagagtatgctccattttgtacaattccattcttaattgataaaatg 656

                                                                       
Query: 657 gataataatttcaataaagtttatgacgcagttccagaaaggttatatgttttagaagat 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gataataatttcaataaagtttatgacgcagttccagaaaggttatatgttttagaagat 716

                                                             
Query: 717 aaaaaattcaaatatgttggtggtcccggcccattnggtttcatncctga 766
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aaaaaattcaaatatgttggtggtcccggcccattnggtttcatncctga 766


 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  atctatatatatggtaataaatt 23
          |||||||||||||||||||||||
Sbjct: 1  atctatatatatggtaataaatt 23


>Contig-U14682-1 (Contig-U14682-1Q) /CSM_Contig/Contig-U14682-1Q.Seq.d
          Length = 2904

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 68 atcttcaaaaatgaattatttattta 93
          ||||||||||||||| ||||||||||
Sbjct: 66 atcttcaaaaatgaagtatttattta 91


>Contig-U11271-1 (Contig-U11271-1Q) /CSM_Contig/Contig-U11271-1Q.Seq.d
          Length = 1095

 Score = 42.1 bits (21), Expect = 9e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 347 taatagtaataataatgaaaaatca 371
           |||||||||||||||| ||||||||
Sbjct: 920 taatagtaataataataaaaaatca 944


 Score = 32.2 bits (16), Expect = 0.84
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 347 taatagtaataataat 362
           ||||||||||||||||
Sbjct: 893 taatagtaataataat 908


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,132
Number of Sequences: 6905
Number of extensions: 17132
Number of successful extensions: 2645
Number of sequences better than 10.0: 595
length of query: 766
length of database: 5,674,871
effective HSP length: 16
effective length of query: 750
effective length of database: 5,564,391
effective search space: 4173293250
effective search space used: 4173293250
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.12
Homology vs DNA 
Query= Contig-U08217-1 (Contig-U08217-1Q) /CSM_Contig/Contig-U08217-1Q.Seq.d
         (766 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...  1388   0.0    2
(BJ372750) Dictyostelium discoideum cDNA clone:ddc13o23, 3' ...  1191   0.0    1
(BJ375130) Dictyostelium discoideum cDNA clone:ddc17e17, 3' ...  1136   0.0    1
(AU060242) Dictyostelium discoideum slug cDNA, clone SLA678.     1134   0.0    3
(EK461017) 1095469332732 Global-Ocean-Sampling_GS-32-01-01-1...    42   2e-05  4
(AX458490) Sequence 36 from Patent WO0246454.                      36   5e-04  5
(Z98551) Plasmodium falciparum MAL3P6.                             34   7e-04  10
(CB470900) sn30_F10.f sn Sus scrofa cDNA 5', mRNA sequence.        44   0.018  2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    44   0.018  9
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         36   0.048  11
(EJ316654) 1095403296420 Global-Ocean-Sampling_GS-27-01-01-1...    38   0.051  3
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.069  13
(AC141814) Apis mellifera clone CH224-61C3, WORKING DRAFT SE...    38   0.073  5
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    38   0.090  7
(EJ582287) 1092960183992 Global-Ocean-Sampling_GS-29-01-01-1...    36   0.096  3
(EX843650) CBNC480.rev CBNC Phycomyces blakesleeanus NRRL155...    50   0.12   1
(EX817296) CBNA5483.rev CBNA Phycomyces blakesleeanus NRRL15...    50   0.12   1
(EJ595227) 1092961077333 Global-Ocean-Sampling_GS-29-01-01-1...    34   0.13   3
(AY072044) Aedes albopictus mitochondrion, complete genome.        40   0.14   4
(EJ601077) 1092961183590 Global-Ocean-Sampling_GS-29-01-01-1...    34   0.16   3
(EJ618961) 1092963045672 Global-Ocean-Sampling_GS-29-01-01-1...    36   0.18   3
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   0.18   8
(AC201352) Strongylocentrotus purpuratus clone R3-17A22, WOR...    44   0.22   2
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    34   0.27   8
(CT030192) M.truncatula DNA sequence from clone MTH2-16D16 o...    42   0.28   5
(BH567586) BOGSW65TR BOGS Brassica oleracea genomic clone BO...    40   0.30   2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    38   0.30   8
(CU694495) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.33   3
(AL034559) Plasmodium falciparum MAL3P7.                           34   0.33   9
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    30   0.35   10
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.36   9
(BH730116) BOMGR57TR BO_2_3_KB Brassica oleracea genomic clo...    38   0.43   3
(CZ966864) 165920 Tomato MboI BAC Library Solanum lycopersic...    46   0.43   2
(AC055712) Homo sapiens 3 BAC RP11-63K8 (Roswell Park Cancer...    40   0.45   6
(CR354582) Zebrafish DNA sequence from clone CH211-215B24 in...    48   0.49   1
(AF275271) Schizosaccharomyces octosporus mitochondrion, com...    48   0.49   1
(AC007533) Homo sapiens chromosome 16 clone RPCI-11_474B12, ...    48   0.49   1
(AC027470) Homo sapiens chromosome 18 clone RP11-120D15 map ...    48   0.49   1
(CR376755) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.49   1
(CZ811514) OC__Ba0186I21.f OC__Ba Oryza coarctata genomic cl...    48   0.49   1
(FG311796) NB.12.8b(T3) NB Schmidtea mediterranea cDNA clone...    48   0.49   1
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.49   11
(FH597139) CHO_OF4917xa01r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   0.50   3
(ER603473) 1093016259695 Global-Ocean-Sampling_GS-36-01-01-2...    34   0.59   3
(AC121066) Oryctolagus cuniculus strain New Zealand White cl...    42   0.62   4
(AM285305) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   0.64   4
(AL806526) Mouse DNA sequence from clone RP23-123F24 on chro...    42   0.67   2
(AC147959) Medicago truncatula clone mth2-11c16, complete se...    42   0.68   4
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       32   0.71   10
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    34   0.79   8
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    34   0.82   10
(ET708996) CHO_OF069xl22f1.ab1 CHO_OF Nicotiana tabacum geno...    38   0.87   2
(BA000016) Clostridium perfringens str. 13 DNA, complete gen...    42   0.89   15
(AY484466) Dictyostelium discoideum kinesin family member 13...    36   0.92   3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.92   13
(AM462190) Vitis vinifera contig VV78X013397.9, whole genome...    40   0.96   4
(AU075961) Dictyostelium discoideum slug cDNA, clone SSC369.       42   0.97   2
(AC225539) Medicago truncatula clone mth2-69c17, WORKING DRA...    44   0.97   5
(AL844507) Plasmodium falciparum chromosome 8.                     36   1.0    12
(FF867592) CBWU12767.g1 Yutaka Satou unpublished cDNA librar...    44   1.1    2
(DQ323892) Schistocerca gregaria engrailed-2 mRNA, partial cds.    44   1.1    2
(BX897742) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   1.2    5
(AC231925) Medicago truncatula chromosome 7 clone mth2-25h7,...    42   1.2    4
(AC216766) Populus trichocarpa clone POP029-O12, complete se...    40   1.3    5
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   1.3    7
(AC143340) Medicago truncatula clone mth2-7f4, complete sequ...    36   1.3    6
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    42   1.4    5
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   1.4    8
(EV810041) 030115FAAD002584HT (FAAD) Epiphyas postvittana ma...    36   1.4    2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    34   1.5    8
(AC201527) Strongylocentrotus purpuratus clone R3-3090B6, WO...    36   1.5    5
(CT033806) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   1.6    5
(BX663603) Zebrafish DNA sequence from clone DKEY-11H7 in li...    40   1.6    5
(AC124958) Medicago truncatula clone mth2-18i11, complete se...    42   1.6    3
(DQ181407) Libnetis sp. UPOL 001008 NADH dehydrogenase subun...    38   1.8    2
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas...    36   1.9    8
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        36   1.9    13
(AC099710) Mus musculus, clone RP23-366C6, complete sequence.      34   1.9    6
(DD194611) Method and nucleic acids for the analysis of a co...    32   1.9    6
(DD194609) Method and nucleic acids for the analysis of a co...    32   1.9    6
(AX825171) Sequence 5 from Patent WO03072812.                      32   1.9    6
(AX825169) Sequence 3 from Patent WO03072812.                      32   1.9    6
(CU302315) Zebrafish DNA sequence from clone RP71-15H11 in l...    46   1.9    1
(AP009606) Solanum lycopersicum DNA, chromosome 8, clone: C0...    46   1.9    1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    46   1.9    1
(AP003197) Oryza sativa Japonica Group genomic DNA, chromoso...    46   1.9    1
(EA703643) Sequence 82522 from patent US 7365185.                  46   1.9    1
(AF465312) Dictyostelium discoideum ABC transporter ABCA.10 ...    46   1.9    1
(AC104689) Homo sapiens BAC clone RP11-158O16 from 4, comple...    46   1.9    1
(AC093013) Homo sapiens 12 BAC RP11-158O15 (Roswell Park Can...    46   1.9    1
(AC128195) Rattus norvegicus clone CH230-439L12, *** SEQUENC...    46   1.9    1
(AC119583) Rattus norvegicus clone CH230-48I4, *** SEQUENCIN...    46   1.9    1
(AC097621) Rattus norvegicus clone CH230-41D17, *** SEQUENCI...    46   1.9    1
(AC223623) Bos taurus clone CH240-463P12, WORKING DRAFT SEQU...    46   1.9    1
(AC165385) Oryctolagus cuniculus clone LB1-139B11, WORKING D...    46   1.9    1
(CU247181) Equus caballus GSS, BAC clone CH241-391G14, T7 en...    46   1.9    1
(CT291847) Sus scrofa genomic clone CH242-331A18, genomic su...    46   1.9    1
(AM054092) Eudiplodinium maggii EST, clone Em03_D08.               46   1.9    1
(FD427475) Atr01b_38_B09_C010.g1 FGP Male Amborella trichopo...    46   1.9    1
(FD427402) Atr01b_37_B09_C010.b1 FGP Male Amborella trichopo...    46   1.9    1

>(AC115598) Dictyostelium discoideum chromosome 2 map 581427-735498
             strain AX4, complete sequence.
          Length = 154071

 Score = 1388 bits (700), Expect(2) = 0.0
 Identities = 707/710 (99%)
 Strand = Plus / Minus


Query: 57    aaagattttccatcttcaaaaatgaattatttatttaatatttttgaagaagagaaacca 116
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44608 aaagattttccatcttcaaaaatgaattatttatttaatatttttgaagaagagaaacca 44549


Query: 117   attaaaaaagcccccattataacagaggaatgttatagaaatggataccatccgagtaaa 176
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44548 attaaaaaagcccccattataacagaggaatgttatagaaatggataccatccgagtaaa 44489


Query: 177   tgggaattagcacaagtattattgaatggtatttggaaaccttataaattcaaaagttat 236
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44488 tgggaattagcacaagtattattgaatggtatttggaaaccttataaattcaaaagttat 44429


Query: 237   atgcaatataaatcaagagaacgtttaaatttacaagcagatacccaatgtccagatgca 296
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44428 atgcaatataaatcaagagaacgtttaaatttacaagcagatacccaatgtccagatgca 44369


Query: 297   atactattggatgaccaaaccaaccaagaggtatcattatatgatttatttaatagtaat 356
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44368 atactattggatgaccaaaccaaccaagaggtatcattatatgatttatttaatagtaat 44309


Query: 357   aataatgaaaaatcagtgcaagatagaccaatggtattaatttgtggtagtttcacctga 416
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44308 aataatgaaaaatcagtgcaagatagaccaatggtattaatttgtggtagtttcacctga 44249


Query: 417   cccccattccgcgacaagatgtgtatgtttcaagacatctttgtcgattttaaagagtgg 476
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44248 cccccattccgcgacaagatgtgtatgtttcaagacatctttgtcgattttaaagagtgg 44189


Query: 477   gttgatatttatattgtttatttgaaagagatacatccagctgatgaatggtatattggt 536
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44188 gttgatatttatattgtttatttgaaagagatacatccagctgatgaatggtatattggt 44129


Query: 537   ggtgatgaaattagtctatgttatcgtcaacctaaaacaatggaagatagaagggaaata 596
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44128 ggtgatgaaattagtctatgttatcgtcaacctaaaacaatggaagatagaagggaaata 44069


Query: 597   atcaaagatttgaaagagtatgctccattttgtacaattccattcttaattgataaaatg 656
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44068 atcaaagatttgaaagagtatgctccattttgtacaattccattcttaattgataaaatg 44009


Query: 657   gataataatttcaataaagtttatgacgcagttccagaaaggttatatgttttagaagat 716
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44008 gataataatttcaataaagtttatgacgcagttccagaaaggttatatgttttagaagat 43949


Query: 717   aaaaaattcaaatatgttggtggtcccggcccattnggtttcatncctga 766
             |||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct: 43948 aaaaaattcaaatatgttggtggtcctggcccatttggtttcatacctga 43899

 Score = 46.1 bits (23), Expect(2) = 0.0
 Identities = 23/23 (100%)
 Strand = Plus / Minus


Query: 1     atctatatatatggtaataaatt 23
             |||||||||||||||||||||||
Sbjct: 44663 atctatatatatggtaataaatt 44641

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,009,802,545
Number of extensions: 66035200
Number of successful extensions: 5859691
Number of sequences better than 10.0: 503
Length of query: 766
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 742
Effective length of database: 97,308,875,965
Effective search space: 72203185966030
Effective search space used: 72203185966030
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08217-1 (Contig-U08217-1Q) /CSM_Contig/Contig-U08217-1Q.Seq.d
         (766 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_13(AC115598|pid:none) Dictyostelium discoideum chromoso...   374   e-102
AY533208_1(AY533208|pid:none) Sus scrofa type III iodothyronine ...    79   2e-13
AY656759_1(AY656759|pid:none) Ovis aries type 3 iodothyronine de...    79   2e-13
AY858552_1(AY858552|pid:none) Bos taurus type III iodothyronine ...    79   2e-13
(Q6DN07) RecName: Full=Type III iodothyronine deiodinase;       ...    79   2e-13
(Q2QEI3) RecName: Full=Type I iodothyronine deiodinase;         ...    78   3e-13
(P55073) RecName: Full=Type III iodothyronine deiodinase;       ...    78   3e-13
DQ098656_1(DQ098656|pid:none) Xenopus laevis type I iodothyronin...    78   3e-13
BC017717_1(BC017717|pid:none) Homo sapiens deiodinase, iodothyro...    78   3e-13
Y11273_1(Y11273|pid:none) G.gallus mRNA for iodothyronine deiodi...    77   6e-13
(O42412) RecName: Full=Type III iodothyronine deiodinase;       ...    77   6e-13
(Q804E1) RecName: Full=Type I iodothyronine deiodinase;         ...    76   1e-12
AY184803_1(AY184803|pid:none) Fundulus heteroclitus deiodinase t...    76   1e-12
U24282_1(U24282|pid:none) Rattus norvegicus type III iodothyroni...    74   4e-12
(P49897) RecName: Full=Type III iodothyronine deiodinase;       ...    74   4e-12
(Q91ZI8) RecName: Full=Type III iodothyronine deiodinase;       ...    74   4e-12
A57240(A57240)thyroxine deiodinase (EC 3.8.1.4), type III - rat        74   4e-12
AB360767_1(AB360767|pid:none) Takifugu rubripes dio1 mRNA for io...    74   4e-12
EU275162_1(EU275162|pid:none) Chiloscyllium punctatum iodothyron...    74   5e-12
(P49894) RecName: Full=Type I iodothyronine deiodinase;         ...    73   1e-11
EU919199_1(EU919199|pid:none) Macropus eugenii deiodinase iodoth...    72   1e-11
BC155742_1(BC155742|pid:none) Danio rerio deiodinase, iodothyron...    72   2e-11
AY221259_1(AY221259|pid:none) Danio rerio iodothyronine deiodina...    72   2e-11
EF428025_1(EF428025|pid:none) Oryctolagus cuniculus type I iodot...    72   2e-11
AM748351_1(AM748351|pid:none) Tremarctos ornatus partial dio2 ge...    72   2e-11
(P70551) RecName: Full=Type II iodothyronine deiodinase;        ...    72   2e-11
AC007372_1(AC007372|pid:none) Homo sapiens chromosome 14 BAC con...    72   2e-11
T10816(T10816) thyroxine deiodinase (EC 3.8.1.4), type II - rat ...    72   2e-11
AF093774_1(AF093774|pid:none) Homo sapiens type 2 iodothyronine ...    72   2e-11
(Q92813) RecName: Full=Type II iodothyronine deiodinase;        ...    72   2e-11
AF093137_1(AF093137|pid:none) Mus musculus type II deiodinase mR...    71   3e-11
(Q9Z1Y9) RecName: Full=Type II iodothyronine deiodinase;        ...    71   3e-11
BC019786_1(BC019786|pid:none) Mus musculus deiodinase, iodothyro...    71   3e-11
AY347714_1(AY347714|pid:none) Felis catus type I iodothyronine d...    71   3e-11
(Q6V915) RecName: Full=Type I iodothyronine deiodinase;         ...    71   3e-11
AY533207_1(AY533207|pid:none) Sus scrofa type II iodothyronine d...    71   4e-11
FJ208959_1(FJ208959|pid:none) Gillichthys mirabilis iodothyronin...    71   4e-11
(Q6Q4C6) RecName: Full=Type I iodothyronine deiodinase;         ...    70   6e-11
FJ208960_1(FJ208960|pid:none) Gillichthys seta iodothyronine dei...    70   6e-11
AY560375_1(AY560375|pid:none) Homo sapiens type I iodothyronine ...    70   6e-11
Y11111_1(Y11111|pid:none) O.niloticus mRNA for type III iodothyr...    70   7e-11
(P24389) RecName: Full=Type I iodothyronine deiodinase;         ...    70   7e-11
BC083557_1(BC083557|pid:none) Rattus norvegicus deiodinase, iodo...    70   7e-11
BC089608_1(BC089608|pid:none) Mus musculus deiodinase, iodothyro...    70   9e-11
AB055517_1(AB055517|pid:none) Suncus murinus 5'DI mRNA for type ...    70   9e-11
EF190704_1(EF190704|pid:none) Carassius auratus deiodinase type ...    70   9e-11
AY339982_1(AY339982|pid:none) Neoceratodus forsteri deiodinase t...    70   9e-11
(Q61153) RecName: Full=Type I iodothyronine deiodinase;         ...    69   1e-10
AY858551_1(AY858551|pid:none) Bos taurus type II iodothyronine d...    69   1e-10
Y11109_1(Y11109|pid:none) O.niloticus mRNA for type I iodothyron...    69   1e-10
JC5825(JC5825)thyroxine deiodinase (EC 3.8.1.4) I - chicken            69   1e-10
AB360768_1(AB360768|pid:none) Takifugu rubripes dio2 mRNA for io...    69   1e-10
AB041843_1(AB041843|pid:none) Homo sapiens mRNA for type II iodo...    69   2e-10
AB360769_1(AB360769|pid:none) Takifugu rubripes dio3a mRNA for i...    69   2e-10
(A7YD35) RecName: Full=Type III iodothyronine deiodinase;       ...    69   2e-10
(Q6QN13) RecName: Full=Type I iodothyronine deiodinase;         ...    69   2e-10
U70869_1(U70869|pid:none) Fundulus heteroclitus type II iodothyr...    68   3e-10
AB362423_1(AB362423|pid:none) Paralichthys olivaceus dio3 mRNA f...    67   5e-10
AF327438_1(AF327438|pid:none) Neoceratodus forsteri deiodinase t...    67   8e-10
AB360770_1(AB360770|pid:none) Takifugu rubripes dio3b mRNA for i...    66   1e-09
(P49898) RecName: Full=Type III iodothyronine deiodinase;       ...    64   5e-09
I51163(I51163;T10529)thyroxine deiodinase (EC 3.8.1.4) III - bul...    64   5e-09
AF207900_1(AF207900|pid:none) Oncorhynchus mykiss type II iodoth...    63   1e-08
EF052283_1(EF052283|pid:none) Xenopus tropicalis iodothyronine t...    63   1e-08
EU558134_1(EU558134|pid:none) Coturnix japonica type 2 iodothyro...    62   2e-08
AF125575_1(AF125575|pid:none) Gallus gallus type 2 iodothyronine...    62   2e-08
AF354707_1(AF354707|pid:none) Xenopus laevis type II deodinase m...    61   4e-08
L42815_1(L42815|pid:none) Rana catesbeiana iodothyronine deiodin...    61   4e-08
AB199797_1(AB199797|pid:none) Anguilla japonica D2 mRNA for type...    54   4e-06
AF318504_1(AF318504|pid:none) Bos taurus hepatic type I 5'-deiod...    53   9e-06
EU746662_1(EU746662|pid:none) Peromyscus polionotus subgriseus d...    52   3e-05
DQ856303_1(DQ856303|pid:none) Hippoglossus hippoglossus iodothyr...    50   1e-04
CP000473_3450(CP000473|pid:none) Solibacter usitatus Ellin6076, ...    49   1e-04
BC157248_1(BC157248|pid:none) Xenopus tropicalis deiodinase, iod...    48   3e-04
DQ856304_1(DQ856304|pid:none) Hippoglossus hippoglossus iodothyr...    47   5e-04
AY221260_1(AY221260|pid:none) Danio rerio iodothyronine deiodina...    45   0.002
CP000360_4777(CP000360|pid:none) Acidobacteria bacterium Ellin34...    40   0.10
AY560377_1(AY560377|pid:none) Homo sapiens type I iodothyronine ...    40   0.10
AY560378_1(AY560378|pid:none) Homo sapiens type I iodothyronine ...    37   0.68
EU313786_1(EU313786|pid:none) Carassius auratus iodothyronine de...    35   2.6
CP000360_1671(CP000360|pid:none) Acidobacteria bacterium Ellin34...    34   5.7
CP000937_1321(CP000937|pid:none) Francisella philomiragia subsp....    33   9.8
AJ968659_1(AJ968659|pid:none) Lactobacillus plantarum insertion ...    33   9.8
AJ968657_1(AJ968657|pid:none) Lactobacillus plantarum insertion ...    33   9.8
AJ968658_1(AJ968658|pid:none) Lactobacillus plantarum insertion ...    33   9.8

>AC115598_13(AC115598|pid:none) Dictyostelium discoideum chromosome
           2 map 581427-735498 strain AX4, complete sequence.
          Length = 223

 Score =  374 bits (959), Expect = e-102
 Identities = 185/219 (84%), Positives = 185/219 (84%)
 Frame = +3

Query: 78  MNYLFNIFEEEKPIKKAPIITEECYRNGYHPSKWELAQVLLNGIWKPYKFKSYMQYKSRE 257
           MNYLFNIFEEEKPIKKAPIITEECYRNGYHPSKWELAQVLLNGIWKPYKFKSYMQYKSRE
Sbjct: 1   MNYLFNIFEEEKPIKKAPIITEECYRNGYHPSKWELAQVLLNGIWKPYKFKSYMQYKSRE 60

Query: 258 RLNLQADTQCPDAILLDDQTNQEVSLYDLFNSNNNEKSVQDRPMVLICGSFT*PPFRDKM 437
           RLNLQADTQCPDAILLDDQTNQEVSLYDLFNSNNNEKSVQDRPMVLIC
Sbjct: 61  RLNLQADTQCPDAILLDDQTNQEVSLYDLFNSNNNEKSVQDRPMVLIC------------ 108

Query: 438 CMFQDIFVDFKEWVDIYIVYLKEIHPADEWYIGGDEISLCYRQPKTMEDRREIIKDLKEY 617
                                 EIHPADEWYIGGDEISLCYRQPKTMEDRREIIKDLKEY
Sbjct: 109 ----------------------EIHPADEWYIGGDEISLCYRQPKTMEDRREIIKDLKEY 146

Query: 618 APFCTIPFLIDKMDNNFNKVYDAVPERLYVLEDKKFKYV 734
           APFCTIPFLIDKMDNNFNKVYDAVPERLYVLEDKKFKYV
Sbjct: 147 APFCTIPFLIDKMDNNFNKVYDAVPERLYVLEDKKFKYV 185

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,250,507,433
Number of extensions: 25515874
Number of successful extensions: 65934
Number of sequences better than 10.0: 85
Number of HSP's gapped: 65848
Number of HSP's successfully gapped: 86
Length of query: 255
Length of database: 1,040,966,779
Length adjustment: 126
Effective length of query: 129
Effective length of database: 637,226,869
Effective search space: 82202266101
Effective search space used: 82202266101
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.60  gvh: 0.11  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for Contig-U08217-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0