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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U08199-1
Contig ID Contig-U08199-1
Contig update 2002. 5. 9
Contig sequence 
>Contig-U08199-1 (Contig-U08199-1Q) /CSM_Contig/Contig-U08199-1Q.Seq.d
ATATTTTCATTAATATATTAATATAAAAATATATTTTTATAACAAGTAAT
TTCCTTTTTTATAAAATGGGAAATAAAAATTCATTGGAACAAAGTGATGG
TGCTGGTGATGGTGCTTGTGATTTAATTCCAGACTTTAAAGAATTTGACA
AAGATGAAGAATTTGTAAATGTTGTTAAAAATTTTTTAATAGTTTGTGAA
AAAATAATGAAAAAAGAAAATAAAAACTTTTTGGAGAATCAAAATGAATT
AATAAAATTAATTTCAAAAACAATCAAACAAAGTAAATATTTTGGGGAAA
TTTCATCAAATATTTTCCAAAAATTTAATTAATATAAGAGAAAATTATCT
ATTGGTTGCCAAAAATCAAATAAATTCTTCAACAAATAAAGTAGTTAAAG
CATTGGAATTAAAAAATTGATATTGGAAAAGTGGTGAAAATGGTTAATGT
TGGTAAAGATCTCAAAATTGGAGTGCCAAAATTAAAAGAGATACAATCAC
AATTAAAAAATTTTACTGAAAGAATTAATTCTCAAAAAGATAATTTATTT
TATAAAAAATTAATTAAATTTTTTAAGTTACAAGGCAAAATAGATGATAA
AACCAAAACCTATTAGTTTATTTGTAGTTGGTGTTTGTAGTGTCCCAGCT
GGAGTTATTACTGCGTCCGTTGTTATTACAATAGGTTTGTCTGCCTTTCC
ATTTACAATTCCGGTTTCTGTTTTTATATTAGGCTGTGCAACAACACTAA
TTTGTTTAATAAATAAATCAATCAACACTGGTAGAATATATGATCAGTTC
ATTGAAACAATTAGTTTTATTTCAAGTCAACTAGAAGCTTTCATTTCTCA
TCTTTCGATTTGTGCAAATGATTTTTGTAATGGCTTAACAAAAAGTCTTG
AACTGCTAGAAAAATCGGATGACAAGGTTGTTTCAATTGAGCATGTGGAT
GCAAACATAAAAATAGTTGATAATATATTAAAAAAAATTCAAACAATTCA
AACTCTTTCAAAACAATTGGAATCATATGAAGAATGTTTAAATGTTAAAG
GTACAGGATGGAATTTCATGAGATCAATTGGATTTTCATCTCAATCACAA
TCCTCGTCACCAACTTCATCATCACAATCTATGGTTAAAAAATAGTATTA
TCACACCAAACAACTCCAATTATAAAATTTTAATAATAATTCTCTTGAAA
ATAATAGAAATAATAATAATAATAAATAAATAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 1248
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 1881669
End point 1882862
Strand (PLUS/MINUS) PLUS
Number of clones 15
Number of EST 25
Link to clone list U08199
List of clone(s) 

est1=SFH588F,-15,439
est2=CFB760F,-8,448
est3=SFD627F,-8,535
est4=SFE521E,-1,1213
est5=CFJ885F,3,431
est6=CFI132F,11,533
est7=CFJ530E,14,1191
est8=CFK227E,30,1220
est9=SFH244F,41,376
est10=SFC608F,44,331
est11=SLC688F,68,722
est12=SSJ821F,68,684
est13=SLK410F,75,278
est14=CFJ885Z,499,1211
est15=SFH244Z,534,1153
est16=CFB760Z,547,1176
est17=SFC608Z,549,1200
est18=SSK577Z,571,1246
est19=CFI132Z,579,1194
est20=SFD627Z,596,1220
est21=SFH588Z,639,1179
est22=SSA789Z,705,1240
est23=SSJ821Z,716,1245
est24=SLC688Z,862,1240
est25=SLK410Z,1063,1249
Translated Amino Acid sequence 
ifinili*kyifitsnflfykmgnknsleqsdgagdgacdlipdfkefdkdeefvnvvkn
flivcekimkkenknflenqneliklisktikqskyfgeissnifqkfn*ykrklsigcq
ksnkffnk*ss*sigikklilekw*kwlmlvkisklecqn*krynhn*killkelilkki
iyfikn*lnflsykak*MIKPKPISLFVVGVCSVPAGVITASVVITIGLSAFPFTIPVSV
FILGCATTLICLINKSINTGRIYDQFIETISFISSQLEAFISHLSICANDFCNGLTKSLE
LLEKSDDKVVSIEHVDANIKIVDNILKKIQTIQTLSKQLESYEECLNVKGTGWNFMRSIG
FSSQSQSSSPTSSSQSMVKK*yyhtkqlql*nfnnnslennrnnnnnk*ikkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ifsliy*yknifl*qvisffikweikihwnkvmvlvmvlvi*fqtlknltkmknl*mllk
if**fvkk**kkkiktfwrikmn**n*fqkqsnkvnilgkfhqifsknlinirenyllva
knqinsstnkvvkalelkn*ywksgeng*cw*rsqnwsakikrdtitikkfy*kn*fskr
*fil*kin*if*vtrqnr**nqnllvyl*lvfvvsqlelllrplllq*vclpfhlqfrfl
fly*avqqh*fv**inqstlveymisslkqlvlfqvn*klsflifrfvqmifvma*qkvl
nc*knrmtrlfqlsmwmqt*k*liiy*kkfkqfklfqnnwnhmknv*mlkvqdgis*dql
dfhlnhnprhqlhhhnlwlknsiitpnnsnykiliiillkiieiiiiink*kkkkk


Frame B:
yfh*yinikiyfynk*fpfl*ngk*kfigtk*wcw*wcl*fnsrl*ri*qr*rickcc*k
ffnsl*knnekrk*klfgesk*inkinfknnqtk*ifwgnfikyfpki*li*ekiiywlp
kik*ilqqik*lkhwn*kidigkvvkmvnvgkdlkigvpklkeiqsqlknfterinsqkd
nlfykklikffklqgkiddktkty*ficswcl*cpswsyycvrcyynrfvclsiynsgfc
fyirlcnntnlfnk*inqhw*ni*svh*nn*fyfkstrsfhfssfdlck*fl*wlnkks*
tarkig*qgcfn*acgckhkns**yikknsnnsnsfktigii*rmfkc*ryrmefheinw
ifisitilvtnfiitiyg*kivlshqttpiikf***fs*k**k*****inkkkkk


Frame C:
ifinili*kyifitsnflfykmgnknsleqsdgagdgacdlipdfkefdkdeefvnvvkn
flivcekimkkenknflenqneliklisktikqskyfgeissnifqkfn*ykrklsigcq
ksnkffnk*ss*sigikklilekw*kwlmlvkisklecqn*krynhn*killkelilkki
iyfikn*lnflsykak*MIKPKPISLFVVGVCSVPAGVITASVVITIGLSAFPFTIPVSV
FILGCATTLICLINKSINTGRIYDQFIETISFISSQLEAFISHLSICANDFCNGLTKSLE
LLEKSDDKVVSIEHVDANIKIVDNILKKIQTIQTLSKQLESYEECLNVKGTGWNFMRSIG
FSSQSQSSSPTSSSQSMVKK*yyhtkqlql*nfnnnslennrnnnnnk*ikkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U08199-1 (Contig-U08199-1Q)
/CSM_Contig/Contig-U08199-1Q.Seq.d
         (1248 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U08199-1 (Contig-U08199-1Q) /CSM_Contig/Conti...  1150  0.0
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U05031-1 (Contig-U05031-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U09591-1 (Contig-U09591-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11844-1 (Contig-U11844-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U11734-1 (Contig-U11734-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U11719-1 (Contig-U11719-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U09539-1 (Contig-U09539-1Q) /CSM_Contig/Conti...    36  0.088
Contig-U13718-1 (Contig-U13718-1Q) /CSM_Contig/Conti...    34  0.35

>Contig-U08199-1 (Contig-U08199-1Q) /CSM_Contig/Contig-U08199-1Q.Seq.d
          Length = 1248

 Score = 1150 bits (580), Expect = 0.0
 Identities = 596/604 (98%)
 Strand = Plus / Plus

                                                                        
Query: 577  gttacaaggcaaaatagatgataaaaccaaaacctattagtttatttgtagttggtgttt 636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577  gttacaaggcaaaatagatgataaaaccaaaacctattagtttatttgtagttggtgttt 636

                                                                        
Query: 637  gtagtgtcccagctggagttattactgcgtccgttgttattacaataggtttgtctgcct 696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637  gtagtgtcccagctggagttattactgcgtccgttgttattacaataggtttgtctgcct 696

                                                                        
Query: 697  ttccatttacaattccggtttctgtttttatattaggctgtgcaacaacactaatttgtt 756
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  ttccatttacaattccggtttctgtttttatattaggctgtgcaacaacactaatttgtt 756

                                                                        
Query: 757  taataaataaatcaatcaacactggtagaatatatgatcagttcattgaaacaattagtt 816
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  taataaataaatcaatcaacactggtagaatatatgatcagttcattgaaacaattagtt 816

                                                                        
Query: 817  ttatttcaagtcaactagaagctttcatttctcatctttcgatttgtgcaaatgattttt 876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  ttatttcaagtcaactagaagctttcatttctcatctttcgatttgtgcaaatgattttt 876

                                                                        
Query: 877  gtaatggcttaacaaaaagtcttgaactgctagaaaaatcggatgacaaggttgtttcaa 936
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877  gtaatggcttaacaaaaagtcttgaactgctagaaaaatcggatgacaaggttgtttcaa 936

                                                                        
Query: 937  ttgagcatgtggatgcaaacataaaaatagttgataatatattnnnnnnnnttcaaacaa 996
            |||||||||||||||||||||||||||||||||||||||||||        |||||||||
Sbjct: 937  ttgagcatgtggatgcaaacataaaaatagttgataatatattaaaaaaaattcaaacaa 996

                                                                        
Query: 997  ttcaaactctttcaaaacaattggaatcatatgaagaatgtttaaatgttaaaggtacag 1056
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997  ttcaaactctttcaaaacaattggaatcatatgaagaatgtttaaatgttaaaggtacag 1056

                                                                        
Query: 1057 gatggaatttcatgagatcaattggattttcatctcaatcacaatcctcgtcaccaactt 1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 gatggaatttcatgagatcaattggattttcatctcaatcacaatcctcgtcaccaactt 1116

                                                                        
Query: 1117 catcatcacaatctatggttaaaaaatagtattatcacaccaaacaactccaattataaa 1176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 catcatcacaatctatggttaaaaaatagtattatcacaccaaacaactccaattataaa 1176

                
Query: 1177 attt 1180
            ||||
Sbjct: 1177 attt 1180


 Score =  579 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 227 ctttttggagaatcaaaatgaattaataaaattaatttcaaaaacaatcaaacaaagtaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ctttttggagaatcaaaatgaattaataaaattaatttcaaaaacaatcaaacaaagtaa 286

                                                                       
Query: 287 atattttggggaaatttcatcaaatattttccaaaaatttaattaatataagagaaaatt 346
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atattttggggaaatttcatcaaatattttccaaaaatttaattaatataagagaaaatt 346

                                                                       
Query: 347 atctattggttgccaaaaatcaaataaattcttcaacaaataaagtagttaaagcattgg 406
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atctattggttgccaaaaatcaaataaattcttcaacaaataaagtagttaaagcattgg 406

                                                                       
Query: 407 aattaaaaaattgatattggaaaagtggtgaaaatggttaatgttggtaaagatctcaaa 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aattaaaaaattgatattggaaaagtggtgaaaatggttaatgttggtaaagatctcaaa 466

                                                               
Query: 467 attggagtgccaaaattaaaagagatacaatcacaattaaaaaattttactg 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 attggagtgccaaaattaaaagagatacaatcacaattaaaaaattttactg 518


 Score =  192 bits (97), Expect = 6e-49
 Identities = 97/97 (100%)
 Strand = Plus / Plus

                                                                       
Query: 64  aaatgggaaataaaaattcattggaacaaagtgatggtgctggtgatggtgcttgtgatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  aaatgggaaataaaaattcattggaacaaagtgatggtgctggtgatggtgcttgtgatt 123

                                                
Query: 124 taattccagactttaaagaatttgacaaagatgaaga 160
           |||||||||||||||||||||||||||||||||||||
Sbjct: 124 taattccagactttaaagaatttgacaaagatgaaga 160


 Score = 30.2 bits (15), Expect = 5.5
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 319 aaaaatttaattaat 333
           |||||||||||||||
Sbjct: 573 aaaaatttaattaat 559


>Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Contig-U12528-1Q.Seq.d
          Length = 1995

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 1101 tcctcgtcaccaacttcatcatca 1124
            |||||||||||| |||||||||||
Sbjct: 421  tcctcgtcaccatcttcatcatca 398


>Contig-U05031-1 (Contig-U05031-1Q) /CSM_Contig/Contig-U05031-1Q.Seq.d
          Length = 1056

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 251  aataaaattaatttcaaaaa 270
            ||||||||||||||||||||
Sbjct: 1003 aataaaattaatttcaaaaa 1022


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,851
Number of Sequences: 6905
Number of extensions: 22851
Number of successful extensions: 2550
Number of sequences better than 10.0: 272
length of query: 1248
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1232
effective length of database: 5,564,391
effective search space: 6855329712
effective search space used: 6855329712
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.12
Homology vs DNA 
Query= Contig-U08199-1 (Contig-U08199-1Q) /CSM_Contig/Contig-U08199-1Q.Seq.d
         (1248 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ399486) Dictyostelium discoideum cDNA clone:dds6o02, 3' e...   783   0.0    3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...   743   0.0    3
(C94239) Dictyostelium discoideum slug cDNA, clone SSK577.        743   0.0    3
(BJ400904) Dictyostelium discoideum cDNA clone:dds15g12, 3' ...   743   0.0    4
(BJ399983) Dictyostelium discoideum cDNA clone:dds8e08, 3' e...   743   0.0    2
(BJ397903) Dictyostelium discoideum cDNA clone:dds10i05, 3' ...   743   0.0    3
(BJ376128) Dictyostelium discoideum cDNA clone:ddc21e08, 3' ...   743   0.0    3
(BJ373698) Dictyostelium discoideum cDNA clone:ddc4h15, 3' e...   743   0.0    5
(BJ376014) Dictyostelium discoideum cDNA clone:ddc20j22, 3' ...   735   0.0    3
(BJ375880) Dictyostelium discoideum cDNA clone:ddc20k07, 3' ...   735   0.0    3
(BJ375100) Dictyostelium discoideum cDNA clone:ddc17o07, 3' ...   735   0.0    5
(BJ402444) Dictyostelium discoideum cDNA clone:dds16o21, 3' ...   581   0.0    3
(AU037037) Dictyostelium discoideum slug cDNA, clone SSA789.      545   0.0    2
(C91210) Dictyostelium discoideum slug cDNA, clone SSJ821.        523   0.0    2
(AU061035) Dictyostelium discoideum slug cDNA, clone SLC688.      289   0.0    5
(BJ386688) Dictyostelium discoideum cDNA clone:dds10i05, 5' ...   202   e-166  6
(AU034323) Dictyostelium discoideum slug cDNA, clone SLC688.      357   e-155  2
(BJ362319) Dictyostelium discoideum cDNA clone:ddc21e08, 5' ...   202   e-153  6
(BJ362125) Dictyostelium discoideum cDNA clone:ddc20k07, 5' ...   202   e-149  5
(BJ361497) Dictyostelium discoideum cDNA clone:ddc17o07, 5' ...   202   e-141  4
(BJ388180) Dictyostelium discoideum cDNA clone:dds8e08, 5' e...   202   e-141  4
(BJ388969) Dictyostelium discoideum cDNA clone:dds16o21, 5' ...   293   e-111  2
(BJ360146) Dictyostelium discoideum cDNA clone:ddc4h15, 5' e...   194   e-109  4
(BJ362224) Dictyostelium discoideum cDNA clone:ddc20j22, 5' ...   202   e-102  4
(BJ391151) Dictyostelium discoideum cDNA clone:dds15g12, 5' ...   149   4e-68  3
(BJ388565) Dictyostelium discoideum cDNA clone:dds6o02, 5' e...   155   4e-44  2
(AU054008) Dictyostelium discoideum slug cDNA, clone SLK410.      182   2e-41  1
(AU074213) Dictyostelium discoideum slug cDNA, clone SSJ821.      155   5e-37  2
(AU060561) Dictyostelium discoideum slug cDNA, clone SLK410.      155   5e-33  1
(CU915820) Medicago truncatula chromosome 5 clone mth2-108e1...    42   0.008  7
(AC097435) Rattus norvegicus clone CH230-200J15, WORKING DRA...    34   0.12   2
(AC125823) Rattus norvegicus clone CH230-508E9, *** SEQUENCI...    34   0.12   2
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    46   0.17   4
(AC120903) Rattus norvegicus clone CH230-459A19, *** SEQUENC...    50   0.20   1
(AC111355) Rattus norvegicus clone CH230-159M7, WORKING DRAF...    50   0.20   1
(EJ134399) 1092343587440 Global-Ocean-Sampling_GS-27-01-01-1...    50   0.20   1
(DX448729) BE2017_C23_R IASMA L2 HindIII BAC library Vitis v...    50   0.20   1
(DE151183) Bombyx mori genomic DNA, Fosmid clone:RO0292-C15_R.     50   0.20   1
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    46   0.43   5
(CT025900) Zebrafish DNA sequence from clone DKEY-10O6 in li...    42   0.57   3
(AM451861) Vitis vinifera contig VV78X041731.4, whole genome...    48   0.81   1
(AM424873) Vitis vinifera contig VV78X088960.5, whole genome...    48   0.81   1
(DI122175) Methylated Promoters of Colon Cancer SpecificExpr...    48   0.81   1
(AL390741) Human DNA sequence from clone RP11-38F19 on chrom...    48   0.81   1
(AC210987) Homo sapiens FOSMID clone ABC9-45391100C12 from c...    48   0.81   1
(AC139871) Rattus norvegicus clone CH230-208K16, WORKING DRA...    48   0.81   1
(AC128435) Rattus norvegicus clone CH230-151A22, *** SEQUENC...    48   0.81   1
(AC103087) Rattus norvegicus clone CH230-102P17, *** SEQUENC...    48   0.81   1
(AC015547) Homo sapiens chromosome 3 clone RP11-195J23, WORK...    48   0.81   1
(EK127127) 1092989900928 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.81   1
(EK107515) 1092963066328 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.81   1
(EJ684013) 1092955161029 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.81   1
(DY327717) OB_MEa0001N18.r OB_MEa Ocimum basilicum cDNA clon...    48   0.81   1
(DY327716) OB_MEa0001N18.f OB_MEa Ocimum basilicum cDNA clon...    48   0.81   1
(AC100720) Homo sapiens chromosome 15, clone CTD-2317M11, co...    46   1.2    2
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   1.9    19
(BH161636) ENTRV07TR Entamoeba histolytica Sheared DNA Entam...    32   2.3    3
(AC222713) Bos taurus clone CH240-441B7, WORKING DRAFT SEQUE...    46   2.4    2
(CZ413302) 1009005 RP42 Bos taurus genomic clone RP42-169E17...    40   2.5    2
(CG963401) MBEAM66TFC mth2 Medicago truncatula genomic clone...    40   3.0    2
(CR385076) Zebrafish DNA sequence from clone DKEY-230H18 in ...    46   3.2    1
(AC183793) Pan troglodytes BAC clone CH251-668L23 from chrom...    46   3.2    1
(AM435184) Vitis vinifera contig VV78X104221.10, whole genom...    46   3.2    1
(AC153121) Medicago truncatula chromosome 8 clone mth2-80o14...    46   3.2    1
(AC152351) Medicago truncatula chromosome 8 clone mth2-75b20...    46   3.2    1
(DD321750) Method for improving organism's environmental str...    46   3.2    1
(AF098497) Caenorhabditis elegans cosmid B0294, complete seq...    46   3.2    1
(AC090983) Homo sapiens chromosome 15, clone RP11-385H1, com...    46   3.2    1
(AC155665) Bos taurus clone CH240-31L16, WORKING DRAFT SEQUE...    46   3.2    1
(AC122945) Rattus norvegicus clone CH230-82L1, *** SEQUENCIN...    46   3.2    1
(AC099262) Rattus norvegicus clone CH230-107H13, *** SEQUENC...    46   3.2    1
(AC223469) Bos taurus clone CH240-469B4, WORKING DRAFT SEQUE...    46   3.2    1
(AC206372) Pongo abelii clone CH253-184E1, WORKING DRAFT SEQ...    46   3.2    1
(AC195032) Colobus guereza clone CH272-36J13, WORKING DRAFT ...    46   3.2    1
(AC182084) Bos taurus clone CH240-424C24, WORKING DRAFT SEQU...    46   3.2    1
(AC175618) Colobus guereza clone CH272-421K17, WORKING DRAFT...    46   3.2    1
(AC174851) Colobus guereza clone CH272-452B14, WORKING DRAFT...    46   3.2    1
(AC019094) Homo sapiens chromosome 15 clone RP11-385H1, WORK...    46   3.2    1
(AC006885) Caenorhabditis elegans clone Y59E1, *** SEQUENCIN...    46   3.2    1
(EK248636) 1095460268408 Global-Ocean-Sampling_GS-31-01-01-1...    46   3.2    1
(EJ366674) 1092963707804 Global-Ocean-Sampling_GS-28-01-01-1...    46   3.2    1
(AG431934) Mus musculus molossinus DNA, clone:MSMg01-307K01....    46   3.2    1
(BF029423) 601765892F1 NIH_MGC_53 Homo sapiens cDNA clone IM...    46   3.2    1
(AC098770) Rattus norvegicus clone CH230-113M1, WORKING DRAF...    42   5.0    3
(AL033514) Caenorhabditis elegans YAC Y75B8A.                      32   5.7    2
(AP002443) Homo sapiens genomic DNA, chromosome 18p11.2 clon...    32   5.9    2
(AP001086) Homo sapiens genomic DNA, chromosome 18 clone:RP1...    32   5.9    2
(AC096721) Homo sapiens BAC clone RP11-19C24 from 4, complet...    38   6.0    6
(AC209039) Populus trichocarpa clone POP009-N17, complete se...    32   6.1    2
(Z93393) Caenorhabditis elegans YAC Y48E1B.                        34   6.2    2
(AL805947) Zebrafish DNA sequence from clone CH211-212P13.         36   7.1    6
(EJ428118) 1093015239014 Global-Ocean-Sampling_GS-28-01-01-1...    34   7.2    3
(AC146217) Pan troglodytes BAC clone RP43-33E1 from chromoso...    34   7.8    7
(ER475611) 1093015231826 Global-Ocean-Sampling_GS-35-01-01-1...    34   7.9    2
(AC121040) Rattus norvegicus clone CH230-418C22, WORKING DRA...    42   8.1    4
(FF130599) CJAH-aad38a03.b1 Caenorhabditis_japonica_CJAH1_ES...    34   8.1    2
(BP066771) Lotus japonicus cDNA, clone:GENLf081g03, 3' end.        34   8.2    2
(BP066084) Lotus japonicus cDNA, clone:GENLf069f07, 3' end.        34   8.2    2
(BP063114) Lotus japonicus cDNA, clone:GENLf014h07, 3' end.        34   8.2    2
(BP074947) Lotus japonicus cDNA, clone:GNLf003b07, 3' end.         34   8.2    2

>(BJ399486) Dictyostelium discoideum cDNA clone:dds6o02, 3' end,
           single read.
          Length = 645

 Score =  783 bits (395), Expect(3) = 0.0
 Identities = 401/403 (99%)
 Strand = Plus / Minus


Query: 577 gttacaaggcaaaatagatgataaaaccaaaacctattagtttatttgtagttggtgttt 636
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 617 gttacaaggcaaaatagatgataaaaaaaaaacctattagtttatttgtagttggtgttt 558


Query: 637 gtagtgtcccagctggagttattactgcgtccgttgttattacaataggtttgtctgcct 696
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gtagtgtcccagctggagttattactgcgtccgttgttattacaataggtttgtctgcct 498


Query: 697 ttccatttacaattccggtttctgtttttatattaggctgtgcaacaacactaatttgtt 756
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttccatttacaattccggtttctgtttttatattaggctgtgcaacaacactaatttgtt 438


Query: 757 taataaataaatcaatcaacactggtagaatatatgatcagttcattgaaacaattagtt 816
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taataaataaatcaatcaacactggtagaatatatgatcagttcattgaaacaattagtt 378


Query: 817 ttatttcaagtcaactagaagctttcatttctcatctttcgatttgtgcaaatgattttt 876
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttatttcaagtcaactagaagctttcatttctcatctttcgatttgtgcaaatgattttt 318


Query: 877 gtaatggcttaacaaaaagtcttgaactgctagaaaaatcggatgacaaggttgtttcaa 936
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtaatggcttaacaaaaagtcttgaactgctagaaaaatcggatgacaaggttgtttcaa 258


Query: 937 ttgagcatgtggatgcaaacataaaaatagttgataatatatt 979
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ttgagcatgtggatgcaaacataaaaatagttgataatatatt 215

 Score =  285 bits (144), Expect(3) = 0.0
 Identities = 144/144 (100%)
 Strand = Plus / Minus


Query: 988  ttcaaacaattcaaactctttcaaaacaattggaatcatatgaagaatgtttaaatgtta 1047
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206  ttcaaacaattcaaactctttcaaaacaattggaatcatatgaagaatgtttaaatgtta 147


Query: 1048 aaggtacaggatggaatttcatgagatcaattggattttcatctcaatcacaatcctcgt 1107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146  aaggtacaggatggaatttcatgagatcaattggattttcatctcaatcacaatcctcgt 87


Query: 1108 caccaacttcatcatcacaatcta 1131
            ||||||||||||||||||||||||
Sbjct: 86   caccaacttcatcatcacaatcta 63

 Score = 38.2 bits (19), Expect(3) = 0.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus


Query: 1149 tatcacaccaaacaactcc 1167
            |||||||||||||||||||
Sbjct: 48   tatcacaccaaacaactcc 30

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,237,272,911
Number of extensions: 81584315
Number of successful extensions: 6862066
Number of sequences better than 10.0: 103
Length of query: 1248
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1224
Effective length of database: 97,308,875,965
Effective search space: 119106064181160
Effective search space used: 119106064181160
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.24
Homology vs Protein 
Query= Contig-U08199-1 (Contig-U08199-1Q) /CSM_Contig/Contig-U08199-1Q.Seq.d
         (1248 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000361_140(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    37   1.5
CP001230_1558(CP001230|pid:none) Persephonella marina EX-H1, com...    37   1.5
FN392320_189(FN392320|pid:none) Pichia pastoris GS115 chromosome...    37   1.9
FN357799_1(FN357799|pid:none) Schistosoma mansoni genome sequenc...    36   3.3
CP000563_934(CP000563|pid:none) Shewanella baltica OS155, comple...    35   4.3
CP001252_3284(CP001252|pid:none) Shewanella baltica OS223, compl...    35   4.3
CP000891_1043(CP000891|pid:none) Shewanella baltica OS195, compl...    35   4.3
CU466930_1457(CU466930|pid:none) Candidatus Cloacamonas acidamin...    35   5.6
AE001584_39(AE001584|pid:none) Borrelia burgdorferi B31 plasmid ...    35   7.3
CP000496_39(CP000496|pid:none) Pichia stipitis CBS 6054 chromoso...    35   7.3
CP000123_235(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    34   9.5
(Q4A6B0) RecName: Full=Valyl-tRNA synthetase;          EC=6.1.1....    34   9.5
AY596297_2796(AY596297|pid:none) Haloarcula marismortui ATCC 430...    34   9.5

>CP000361_140(CP000361|pid:none) Arcobacter butzleri RM4018,
           complete genome.
          Length = 342

 Score = 37.0 bits (84), Expect = 1.5
 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 16/77 (20%)
 Frame = +3

Query: 120 DLIPDFKEFDKDEEFVNVVKNFLIVCEKIMKKE------NKNFLENQNELIKLI------ 263
           ++I  FKEF+K ++F  ++ NF  +     KKE      +  +LE +N +IKL+
Sbjct: 263 EIISLFKEFEKQQQFPIILNNFEPLVSSDFKKEKYTTIIDHRYLEVKNNMIKLLLWYDNE 322

Query: 264 ----SKTIKQSKYFGEI 302
               SK ++  KY+ EI
Sbjct: 323 WGYASKVVEILKYYEEI 339

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,495,143,180
Number of extensions: 24570338
Number of successful extensions: 85119
Number of sequences better than 10.0: 13
Number of HSP's gapped: 85020
Number of HSP's successfully gapped: 13
Length of query: 416
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 285
Effective length of database: 621,205,444
Effective search space: 177043551540
Effective search space used: 177043551540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.95  gvh: 0.56  alm: 0.25  top: 0.33  tms: 0.13  mit: 0.34  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 28.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for Contig-U08199-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 5
CH (FL, L) 0
CF (FL, S) 5
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0