Contig-U08029-1
Contig ID Contig-U08029-1
Contig update 2002. 5. 9
Contig sequence
>Contig-U08029-1 (Contig-U08029-1Q) /CSM_Contig/Contig-U08029-1Q.Seq.d
AAAAAAAAAAAAAAAAAAAAGAATCAAATATGTACAGTGGTGATGATGTA
TCAGCAATCGTTATTGATGTTGGAACCTTTTCAACAAAAGGTGGTTATGC
TGGTGAAGATTCACCAAAAGCAGTATTTCCAACTGATATAGGTGTTGTAT
ATAAAAACGAGAATGAAACAGTTGGAACAGGTGATTCTGAAATGGGTGAA
AAAGATGATTCAGAACCAAAGAGAACTTATTATTGTGGTACAAATGGTAT
CACTTATAGAAGACCACATATGGAGATCATTAATCCTTTATCCGATGGTT
TAATTAAAAATTGGGATGCGATGGAACAAATTTGGAATCATACTTTCTAT
GAAAGATTACATATCAACCCAATTGAACATCCAATATTATTAGCAGAACC
AACATATAATACAAGAGCAATTAGAGAGAAAGTAACAGAGATTATGTTTG
AAAAATATCATGCACCAGCATTATTCATTGCAAAGAATGCTGTTTTATCT
TCATTTGCAAGTTCAAAAGCATCTTCATTAGTATTAGATTCTGGTGGTGG
TATGACTTCTGTCACACCTGTATTTGAAGGTTTTGTTGTTAAAAATGGTA
TTGTAAAATCAAATTTAGCAGGTAATAGATTAACAGAAGAATATTATAGA
ATTTTATCTAGTAAAAATATTACAGTCAATCCAATTAATTTAATTAAAAA
AGTAGAGATTAAAACTGGTGAATTTGGTATTACACCATACAATATACCAA
CACTCACTGAATCTTATAAAAGATATGTTACATTAGAAACTATTAGAGAT
TTAAAAGAAACTTCTTGTAGAGTTTCTGATACAAAGGATTTAGGTGAAGA
TATAAATATAGCACAAGTACCATATGAATTGCCAGATGGTAATTTATTAG
AGATTGGTTCAGATAGATTTCAAATTCCTGAATTATTATTTAATCCAACA
CCATTGAATGAACAAATTTTAAATAACAATAATAATAATAGCAATGGTGA
GAATACAACAACATCATCAGTTGTTCAACAACCACAATATCAAGGATTAG
GAAGAATGATTATAGAATCATTAGAGAAAAGTGATACAGATATTCGTAAA
GAATTAATAAGTAATTTAATTATAACTGGTGGTAATACATTATTTGCAGG
TTTCCAAGAAAGATTAGTTAGAGACATTTCTGAAATCTCTTATAATAAAC
CAAAAATCGTTGCAAATCAAACTGAAAAAAAGAATTCAGTTTGGATTGGT
GGTTCTGTTCTTGGTTCATTAGGTACTTTTCAACAAATGTGGATGTCAAA
ATCTGAATGGGAAGAATTTGGTCGCCCATTAGTTGAAAAGAAATGTCCAT
AAAATACATAATTAATTTCAAAAATAAAAAAAAAANTAAAAAAAATAAAA
AAAAAAAAAGTTAAACTAAATAAAAAAAAA

Gap no gap
Contig length 1430
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3822841
End point 3824274
Strand (PLUS/MINUS) PLUS
Number of clones 13
Number of EST 14
Link to clone list U08029
List of clone(s)

est1=SLK622F,1,666
est2=CFI624F,12,583
est3=AFO764F,34,641
est4=CFI572F,59,301
est5=AFG296Z,592,1251
est6=SFC783Z,612,1256
est7=CFH524Z,633,1261
est8=SFF737Z,655,1254
est9=SFL243Z,656,1284
est10=CFK273Z,762,1268
est11=SFB730Z,769,1292
est12=AFL224Z,823,1250
est13=AFA162Z,890,1248
est14=SLK622Z,1156,1431
Translated Amino Acid sequence
KKKKKKESNMYSGDDVSAIVIDVGTFSTKGGYAGEDSPKAVFPTDIGVVYKNENETVGTG
DSEMGEKDDSEPKRTYYCGTNGITYRRPHMEIINPLSDGLIKNWDAMEQIWNHTFYERLH
INPIEHPILLAEPTYNTRAIREKVTEIMFEKYHAPALFIAKNAVLSSFASSKASSLVLDS
GGGMTSVTPVFEGFVVKNGIVKSNLAGNRLTEEYYRILSSKNITVNPINLIKKVEIKTGE
FGITPYNIPTLTESYKRYVTLETIRDLKETSCRVSDTKDLGEDINIAQVPYELPDGNLLE
IGSDRFQIPELLFNPTPLNEQILNNNNNNSNGENTTTSSVVQQPQYQGLGRMIIESLEKS
DTDIRKELISNLIITGGNTLFAGFQERLVRDISEISYNKPKIVANQTEKKNSVWIGGSVL
GSLGTFQQMWMSKSEWEEFGRPLVEKKCP*nt*liskikkkxkkikkkkvklnkkk


Translated Amino Acid sequence (All Frames)
Frame A:
kkkkkkknqictvvmmyqqsllmlepfqqkvvmlvkihqkqyfqli*vlyiktrmkqleq
vilkwvkkmiqnqreliivvqmvsliedhiwrslilypmv*lkigmrwnkfgiilsmkdy
istqlniqyy*qnqhiiqeqlerk*qrlclknimhqhyslqrmlfylhlqvqkhlh*y*i
lvvv*llshlylkvlllkmvl*nqi*qvid*qkniiefylvkilqsiqli*lkk*rlklv
nlvlhhtiyqhslnlikdmlh*kllei*kkllvefliqri*vki*i*hkyhmncqmviy*
rlvqidfkflnyyliqhh*mnkf*itiiiiamvriqqhhqlfnnhnikd*ee*l*nh*rk
viqifvkn**vi*l*lvvihylqvskkd*letflksliinqkslqiklkkriqfglvvlf
lvh*vlfnkcgcqnlngknlvah*lkrnvhkihn*fqk*kkx*kk*kkkkln*ikk


Frame B:
kkkkkkrikyvqw**cisnry*cwnlfnkrwlcw*rftkssisn*yrcci*kre*nswnr
*f*ng*kr*frtkenlllwykwyhl*kttygdh*sfirwfn*klgcdgtnlesyfl*kit
yqpn*tsniisrtni*yksn*resnrdyv*kisctsiihckeccfifickfksifisirf
wwwydfchtci*rfcc*kwyckikfsr**inrril*nfi**kyysqsn*fn*ksrd*nw*
iwyytiqytnth*il*kicyirny*rfkrnfl*sf*ykgfr*rykyststi*iarw*fir
dwfr*isns*iii*sntie*tnfk*q****qw*eynniiscstttisrirkndyriirek
*yrys*rink*fnynww*yiicrfprkis*rhf*nll**tknrcksn*kkefsldwwfcs
wfiryfstnvdvki*mgriwspis*kemsikyiinfknkkkxkknkkkks*tk*kk


Frame C:
KKKKKKESNMYSGDDVSAIVIDVGTFSTKGGYAGEDSPKAVFPTDIGVVYKNENETVGTG
DSEMGEKDDSEPKRTYYCGTNGITYRRPHMEIINPLSDGLIKNWDAMEQIWNHTFYERLH
INPIEHPILLAEPTYNTRAIREKVTEIMFEKYHAPALFIAKNAVLSSFASSKASSLVLDS
GGGMTSVTPVFEGFVVKNGIVKSNLAGNRLTEEYYRILSSKNITVNPINLIKKVEIKTGE
FGITPYNIPTLTESYKRYVTLETIRDLKETSCRVSDTKDLGEDINIAQVPYELPDGNLLE
IGSDRFQIPELLFNPTPLNEQILNNNNNNSNGENTTTSSVVQQPQYQGLGRMIIESLEKS
DTDIRKELISNLIITGGNTLFAGFQERLVRDISEISYNKPKIVANQTEKKNSVWIGGSVL
GSLGTFQQMWMSKSEWEEFGRPLVEKKCP*nt*liskikkkxkkikkkkvklnkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U08029-1 (Contig-U08029-1Q)
/CSM_Contig/Contig-U08029-1Q.Seq.d
(1430 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U08029-1 (Contig-U08029-1Q) /CSM_Contig/Conti... 2633 0.0
Contig-U04020-1 (Contig-U04020-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U11818-1 (Contig-U11818-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U05380-1 (Contig-U05380-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11763-1 (Contig-U11763-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U11521-1 (Contig-U11521-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U10909-1 (Contig-U10909-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U10898-1 (Contig-U10898-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U06311-1 (Contig-U06311-1Q) /CSM_Contig/Conti... 42 0.002

>Contig-U08029-1 (Contig-U08029-1Q) /CSM_Contig/Contig-U08029-1Q.Seq.d
Length = 1430

Score = 2633 bits (1328), Expect = 0.0
Identities = 1342/1349 (99%)
Strand = Plus / Plus


Query: 21 gaatcaaatatgtacagtggtgatgatgtatcagcaatcgttattgatgttggaaccttt 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21 gaatcaaatatgtacagtggtgatgatgtatcagcaatcgttattgatgttggaaccttt 80


Query: 81 tcaacaaaaggtggttatgctggtgaagattcaccaaaagcagtatttccaactgatata 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 tcaacaaaaggtggttatgctggtgaagattcaccaaaagcagtatttccaactgatata 140


Query: 141 ggtgttgtatataaaaacgagaatgaaacagttggaacaggtgattctgaaatgggtgaa 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ggtgttgtatataaaaacgagaatgaaacagttggaacaggtgattctgaaatgggtgaa 200


Query: 201 aaagatgattcagaaccaaagagaacttattattgtggtacaaatggtatcacttataga 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagatgattcagaaccaaagagaacttattattgtggtacaaatggtatcacttataga 260


Query: 261 agaccacatatggagatcattaatcctttatccgatggtttaattaaaaattgggatgcg 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaccacatatggagatcattaatcctttatccgatggtttaattaaaaattgggatgcg 320


Query: 321 atggaacaaatttggaatcatactttctatgaaagattacatatcaacccaattgaacat 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggaacaaatttggaatcatactttctatgaaagattacatatcaacccaattgaacat 380


Query: 381 ccaatattattagcagaaccaacatataatacaagagcaattagagagaaagtaacagag 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaatattattagcagaaccaacatataatacaagagcaattagagagaaagtaacagag 440


Query: 441 attatgtttgaaaaatatcatgcaccagcattattcattgcaaagaatgctgttttatct 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attatgtttgaaaaatatcatgcaccagcattattcattgcaaagaatgctgttttatct 500


Query: 501 tcatttgcaagttcaaaagcatcttcattagtattagattctggtggtggtatgacttct 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcatttgcaagttcaaaagcatcttcattagtattagattctggtggtggtatgacttct 560


Query: 561 gtcacacctgtatttgaaggttttgttgttaaaaatggtattgtaaaatcaaatttagca 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcacacctgtatttgaaggttttgttgttaaaaatggtattgtaaaatcaaatttagca 620


Query: 621 ggtaatagattaacagaagaatattatagaattttatctagtaaaaatattacagtcaat 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtaatagattaacagaagaatattatagaattttatctagtaaaaatattacagtcaat 680


Query: 681 ccaattaatttaattaaaaaagtagagattaaaactggtgaatttggtattacaccatac 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccaattaatttaattaaaaaagtagagattaaaactggtgaatttggtattacaccatac 740


Query: 741 aatataccaacactcactgaatcttataaaagatatgttacattagaaactattagagat 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatataccaacactcactgaatcttataaaagatatgttacattagaaactattagagat 800


Query: 801 ttaaaagaaacttcttgtagagtttctgatacaaaggatttaggtgaagatataaatata 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaaaagaaacttcttgtagagtttctgatacaaaggatttaggtgaagatataaatata 860


Query: 861 gcacaagtaccatatgaattgccagatggtaatttattagagattggttcagatagattt 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gcacaagtaccatatgaattgccagatggtaatttattagagattggttcagatagattt 920


Query: 921 caaattcctgaattattatttaatccaacaccattgaatgaacaaattttaaataacaat 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 caaattcctgaattattatttaatccaacaccattgaatgaacaaattttaaataacaat 980


Query: 981 aataataatagcaatggtgagaatacaacaacatcatcagttgttcaacaaccacaatat 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 aataataatagcaatggtgagaatacaacaacatcatcagttgttcaacaaccacaatat 1040


Query: 1041 caaggattaggaagaatgattatagaatcattagagaaaagtgatacagatattcgtaaa 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 caaggattaggaagaatgattatagaatcattagagaaaagtgatacagatattcgtaaa 1100


Query: 1101 gaattaataagtaatttaattataactggtggtaatacattatttgcaggtttccaagaa 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 gaattaataagtaatttaattataactggtggtaatacattatttgcaggtttccaagaa 1160


Query: 1161 agattagttagagacatttctgaaatctcttataataaaccaaaaatcgttgcaaatcaa 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 agattagttagagacatttctgaaatctcttataataaaccaaaaatcgttgcaaatcaa 1220


Query: 1221 actgnnnnnnngaattcagtttggattggtggttctgttcttggttcattaggtactttt 1280
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 actgaaaaaaagaattcagtttggattggtggttctgttcttggttcattaggtactttt 1280


Query: 1281 caacaaatgtggatgtcaaaatctgaatgggaagaatttggtcgcccattagttgaaaag 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 caacaaatgtggatgtcaaaatctgaatgggaagaatttggtcgcccattagttgaaaag 1340


Query: 1341 aaatgtccataaaatacataattaatttc 1369
|||||||||||||||||||||||||||||
Sbjct: 1341 aaatgtccataaaatacataattaatttc 1369


>Contig-U04020-1 (Contig-U04020-1Q) /CSM_Contig/Contig-U04020-1Q.Seq.d
Length = 378

Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 967 ttttaaataacaataataataat 989
|||||||||||||||||||||||
Sbjct: 56 ttttaaataacaataataataat 78


>Contig-U11818-1 (Contig-U11818-1Q) /CSM_Contig/Contig-U11818-1Q.Seq.d
Length = 869

Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 969 ttaaataacaataataataata 990
||||||||||||||||||||||
Sbjct: 638 ttaaataacaataataataata 659


Score = 38.2 bits (19), Expect = 0.026
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 972 aataacaataataataata 990
|||||||||||||||||||
Sbjct: 575 aataacaataataataata 593


Score = 38.2 bits (19), Expect = 0.026
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 972 aataacaataataataata 990
|||||||||||||||||||
Sbjct: 674 aataacaataataataata 692


Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 972 aataacaataataataatag 991
||||| ||||||||||||||
Sbjct: 842 aataataataataataatag 861


Score = 32.2 bits (16), Expect = 1.6
Identities = 22/24 (91%)
Strand = Plus / Plus


Query: 972 aataacaataataataatagcaat 995
||||| ||||||||||||| ||||
Sbjct: 653 aataataataataataataacaat 676


Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 972 aataacaataataataata 990
||||||||||| |||||||
Sbjct: 668 aataacaataacaataata 686


Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 972 aataacaataataataata 990
||||| |||||||||||||
Sbjct: 581 aataataataataataata 599


Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 972 aataacaataataataata 990
||||| |||||||||||||
Sbjct: 647 aataataataataataata 665


Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 972 aataacaataataataata 990
||||| |||||||||||||
Sbjct: 839 aataataataataataata 857


Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 972 aataacaataataataata 990
||||| |||||||||||||
Sbjct: 680 aataataataataataata 698


Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 972 aataacaataataataata 990
||||| |||||||||||||
Sbjct: 650 aataataataataataata 668


Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 972 aataacaataataataata 990
||||| |||||||||||||
Sbjct: 584 aataataataataataata 602


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,425
Number of Sequences: 6905
Number of extensions: 35425
Number of successful extensions: 11977
Number of sequences better than 10.0: 1456
length of query: 1430
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1414
effective length of database: 5,564,391
effective search space: 7868048874
effective search space used: 7868048874
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.12
Homology vs DNA
Query= Contig-U08029-1 (Contig-U08029-1Q) /CSM_Contig/Contig-U08029-1Q.Seq.d
(1430 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ342431) Dictyostelium discoideum cDNA clone:dda13o24, 3' ... 1255 0.0 2
(BJ347155) Dictyostelium discoideum cDNA clone:dda26d09, 3' ... 1221 0.0 2
(BJ399638) Dictyostelium discoideum cDNA clone:dds6f21, 3' e... 1213 0.0 2
(AU060604) Dictyostelium discoideum slug cDNA, clone SLK622. 1205 0.0 2
(BJ329082) Dictyostelium discoideum cDNA clone:dda30p15, 5' ... 1205 0.0 1
(BJ374769) Dictyostelium discoideum cDNA clone:ddc16o05, 3' ... 1174 0.0 2
(BJ401453) Dictyostelium discoideum cDNA clone:dds23e12, 3' ... 1128 0.0 2
(BJ398416) Dictyostelium discoideum cDNA clone:dds12j09, 3' ... 1122 0.0 2
(BJ361666) Dictyostelium discoideum cDNA clone:ddc18o06, 5' ... 1116 0.0 1
(BJ399149) Dictyostelium discoideum cDNA clone:dds4l07, 3' e... 898 0.0 2
(BJ376242) Dictyostelium discoideum cDNA clone:ddc21a20, 3' ... 841 0.0 2
(BJ345282) Dictyostelium discoideum cDNA clone:dda23o06, 3' ... 759 0.0 2
(BJ342799) Dictyostelium discoideum cDNA clone:dda1k15, 3' e... 567 0.0 3
(BJ361776) Dictyostelium discoideum cDNA clone:ddc18o17, 5' ... 460 e-125 1
(C83968) Dictyostelium discoideum slug cDNA, clone SLK622. 268 7e-81 3
(AJ132371) Allogromia sp. mRNA for actin 2. 40 1e-09 5
(CD081552) MA3-9999U-M323-G11-U.G MA3-0001 Schistosoma manso... 76 4e-09 1
(CD076071) MA3-0001U-M334-F01-U.G MA3-0001 Schistosoma manso... 76 4e-09 1
(CD075377) MA3-0001U-M323-G11-U.G MA3-0001 Schistosoma manso... 76 4e-09 1
(CD073594) MA3-0001U-M273-C01-U.B MA3-0001 Schistosoma manso... 76 4e-09 1
(AY283760) Actinophrys sol isolate AsolAc2_5 actin gene, par... 42 1e-08 5
(EL377549) CFFM14877.b1_I24.ab1 CFF(LMS) safflower Carthamus... 50 2e-06 2
(EL385806) CFFM23255.b1_M06.ab1 CFF(LMS) safflower Carthamus... 50 2e-06 2
(EL388022) CFFM25353.b1_A03.ab1 CFF(LMS) safflower Carthamus... 50 2e-06 2
(EL387262) CFFM24638.b1_K15.ab1 CFF(LMS) safflower Carthamus... 50 2e-06 2
(EL374859) CFFM12120.b1_O06.ab1 CFF(LMS) safflower Carthamus... 50 2e-06 2
(EH726595) CNMM13028.b1_H18.ab1 CNM(LMS) spotted knapweed Ce... 50 2e-06 2
(EL377770) CFFM15103.b1_N07.ab1 CFF(LMS) safflower Carthamus... 50 2e-06 2
(EL394221) CFFM5653.b1_I22.ab1 CFF(LMS) safflower Carthamus ... 50 2e-06 2
(AY283754) Clathrulina elegans isolate Cla70_1 actin mRNA, p... 42 3e-06 4
(BW643359) Dugesia ryukyuensis mRNA, clone: Dr_sW_027_C07, 5... 46 3e-06 3
(EL386706) CFFM24090.b1_C24.ab1 CFF(LMS) safflower Carthamus... 50 7e-06 2
(AJ508529) Candida fennica partial act1 gene for actin, stra... 34 1e-05 6
(AJ508483) Candida nitrativorans partial act1 gene for actin... 50 1e-05 3
(ES599114) BPE00000423 Buddenbrockia plumatellae SMART cDNA ... 64 2e-05 1
(ES599047) BPE00000503 Buddenbrockia plumatellae SMART cDNA ... 64 2e-05 1
(AY763971) Globobulimina turgida clone GoA130_42s actin type... 32 2e-05 6
(AY763972) Globobulimina turgida clone GoA130_46s actin type... 32 2e-05 6
(BJ428317) Dictyostelium discoideum cDNA clone:ddv11b15, 3' ... 36 2e-05 4
(AY283759) Actinophrys sol isolate Asol2_9k actin gene, part... 46 2e-05 3
(EL398562) CFFM9877.b1_I22.ab1 CFF(LMS) safflower Carthamus ... 46 2e-05 2
(X03282) dictyostelium discoideum gene for actin A12. 38 3e-05 5
(BJ428897) Dictyostelium discoideum cDNA clone:ddv1j18, 3' e... 36 3e-05 4
(AU284282) Dictyostelium discoideum gamete cDNA clone:FC-AH1... 38 4e-05 5
(AY763401) Tretomphalus sp. B123 clone TRE6 actin deviating ... 40 4e-05 3
(AY763973) Globobulimina turgida clone GoA130_47s actin type... 32 6e-05 6
(DQ017265) Orientobilharzia turkestanicum actin mRNA, comple... 44 7e-05 3
(AY810743) Schistosoma japonicum SJCHGC03779 protein mRNA, p... 58 9e-05 2
(EH754565) CNSL13734.b1_L02.ab1 CNS(LMS) yellow starthistle ... 46 9e-05 2
(FD411392) 1106514814545 Cryptosporidium muris (strain RN66)... 46 1e-04 4
(BU724074) SJMBDC05 SJM Schistosoma japonicum cDNA similar t... 58 1e-04 2
(BU803941) SJFBEH10 SJF Schistosoma japonicum cDNA similar t... 58 1e-04 2
(AJ236897) Candida dubliniensis ACT1 gene, exons 1-2. 40 1e-04 4
(EH755177) CNSL14295.b1_M21.ab1 CNS(LMS) yellow starthistle ... 46 1e-04 2
(FD414620) 1106540248899 Cryptosporidium muris (strain RN66)... 46 1e-04 4
(EH756414) CNSL15429.b1_I17.ab1 CNS(LMS) yellow starthistle ... 46 1e-04 2
(EH767234) CNSM13466.b1_C07.ab1 CNS(LMS) yellow starthistle ... 46 1e-04 2
(EH762495) CNSL8496.b1_O11.ab1 CNS(LMS) yellow starthistle C... 46 1e-04 2
(EH769719) CNSM2333.b1_I07.ab1 CNS(LMS) yellow starthistle C... 46 1e-04 2
(EH770567) CNSM3188.b1_H05.ab1 CNS(LMS) yellow starthistle C... 46 1e-04 2
(AJ604534) Debaryomyces vanrijiae var. vanrijiae partial act... 38 1e-04 5
(AJ508511) Pichia anomala partial act1 gene for actin, strai... 40 2e-04 2
(CA756013) BR030033000_PLATE_A05_33_035.ab1 OA Oryza sativa ... 44 2e-04 2
(FG179139) 2003980_B01 WRN-02: Walnut root infected with Pr... 46 2e-04 2
(FG179152) 2003981_B01 WRN-02: Walnut root infected with Pr... 46 2e-04 2
(AY120925) Cryptosporidium sp. 1453 actin gene, partial cds. 34 3e-04 5
(AF363539) Cercomonas ATCC50319 actin (act) gene, partial cds. 38 3e-04 3
(AY283757) Actinosphaerium nucleofilum isolate Anu4_3 actin ... 32 3e-04 5
(FD412973) 1106515111624 Cryptosporidium muris (strain RN66)... 46 3e-04 4
(EL392111) CFFM3675.b1_E08.ab1 CFF(LMS) safflower Carthamus ... 50 4e-04 2
(EL374537) CFFM11788.b1_G20.ab1 CFF(LMS) safflower Carthamus... 50 4e-04 2
(AY283758) Actinophrys sol isolate Asol2_7k actin gene, part... 46 5e-04 4
(AY283747) Micronuclearia podoventralis isolate MiAc54_1 act... 42 5e-04 4
(AJ508518) Pichia norvegensis partial act1 gene for actin, s... 36 7e-04 5
(AJ389085) Pichia norvegensis partial act1 gene, strain CBS ... 36 7e-04 5
(AJ389084) Pichia norvegensis partial act1 gene, strain CBS ... 36 7e-04 5
(AJ867052) Debaryomyces castellii partial act1 gene for acti... 36 7e-04 5
(AJ389058) Candida dubliniensis partial act1 gene, strain CB... 36 8e-04 4
(AY283755) Hedriocystis reticulata isolate HYDR37_3K actin g... 38 9e-04 2
(CI552084) Oryza sativa Japonica Group cDNA, clone: J10B0053... 40 0.001 2
(CI543709) Oryza sativa Japonica Group cDNA, clone: J10B0025... 40 0.001 2
(CI557541) Oryza sativa Japonica Group cDNA, clone: J10B0071... 40 0.001 2
(FD409843) 1106514772300 Cryptosporidium muris (strain RN66)... 46 0.001 4
(BU773785) SJEFOF03 SJE Schistosoma japonicum cDNA similar t... 58 0.001 1
(FD408679) 1106514718408 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD397365) 1106514226318 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD388480) 1106121092743 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD400052) 1106514310024 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD411006) 1106514803136 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD403860) 1106514424051 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD409317) 1106514747582 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD412774) 1106515108869 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD403585) 1106514416924 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD413527) 1106515130807 Cryptosporidium muris (strain RN66)... 46 0.001 4
(FD411900) 1106514827535 Cryptosporidium muris (strain RN66)... 46 0.001 4
(AF101729) Naegleria gruberi actin (act1) gene, complete cds. 44 0.002 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 44 0.002 4
(AJ508522) Kazachstania barnettii partial act1 gene for acti... 34 0.002 5
(AJ508512) Pichia burtonii partial act1 gene for actin, stra... 34 0.002 5
(AJ508486) Candida orthopsilosis partial act1 gene for actin... 32 0.002 5

>(BJ342431) Dictyostelium discoideum cDNA clone:dda13o24, 3' end,
single read.
Length = 659

Score = 1255 bits (633), Expect(2) = 0.0
Identities = 633/633 (100%)
Strand = Plus / Minus


Query: 592 aaaatggtattgtaaaatcaaatttagcaggtaatagattaacagaagaatattatagaa 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aaaatggtattgtaaaatcaaatttagcaggtaatagattaacagaagaatattatagaa 600


Query: 652 ttttatctagtaaaaatattacagtcaatccaattaatttaattaaaaaagtagagatta 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttttatctagtaaaaatattacagtcaatccaattaatttaattaaaaaagtagagatta 540


Query: 712 aaactggtgaatttggtattacaccatacaatataccaacactcactgaatcttataaaa 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 aaactggtgaatttggtattacaccatacaatataccaacactcactgaatcttataaaa 480


Query: 772 gatatgttacattagaaactattagagatttaaaagaaacttcttgtagagtttctgata 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gatatgttacattagaaactattagagatttaaaagaaacttcttgtagagtttctgata 420


Query: 832 caaaggatttaggtgaagatataaatatagcacaagtaccatatgaattgccagatggta 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 caaaggatttaggtgaagatataaatatagcacaagtaccatatgaattgccagatggta 360


Query: 892 atttattagagattggttcagatagatttcaaattcctgaattattatttaatccaacac 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atttattagagattggttcagatagatttcaaattcctgaattattatttaatccaacac 300


Query: 952 cattgaatgaacaaattttaaataacaataataataatagcaatggtgagaatacaacaa 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cattgaatgaacaaattttaaataacaataataataatagcaatggtgagaatacaacaa 240


Query: 1012 catcatcagttgttcaacaaccacaatatcaaggattaggaagaatgattatagaatcat 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 catcatcagttgttcaacaaccacaatatcaaggattaggaagaatgattatagaatcat 180


Query: 1072 tagagaaaagtgatacagatattcgtaaagaattaataagtaatttaattataactggtg 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tagagaaaagtgatacagatattcgtaaagaattaataagtaatttaattataactggtg 120


Query: 1132 gtaatacattatttgcaggtttccaagaaagattagttagagacatttctgaaatctctt 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gtaatacattatttgcaggtttccaagaaagattagttagagacatttctgaaatctctt 60


Query: 1192 ataataaaccaaaaatcgttgcaaatcaaactg 1224
|||||||||||||||||||||||||||||||||
Sbjct: 59 ataataaaccaaaaatcgttgcaaatcaaactg 27

Score = 38.2 bits (19), Expect(2) = 0.0
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 1232 gaattcagtttggattggt 1250
|||||||||||||||||||
Sbjct: 19 gaattcagtttggattggt 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,767,194,642
Number of extensions: 112481935
Number of successful extensions: 12628358
Number of sequences better than 10.0: 5994
Length of query: 1430
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1406
Effective length of database: 97,308,875,965
Effective search space: 136816279606790
Effective search space used: 136816279606790
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U08029-1 (Contig-U08029-1Q) /CSM_Contig/Contig-U08029-1Q.Seq.d
(1430 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q84M92) RecName: Full=Actin-related protein 4; &AK228098_1(AK2... 362 1e-98
AY087788_1(AY087788|pid:none) Arabidopsis thaliana clone 38419 m... 362 2e-98
AC152123_6(AC152123|pid:none) Genomic sequence for broccoli [Bra... 362 2e-98
BT038602_1(BT038602|pid:none) Zea mays full-length cDNA clone ZM... 356 1e-96
CP001330_208(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 324 6e-87
CR954204_278(CR954204|pid:none) Ostreococcus tauri strain OTTH05... 296 9e-79
BC045889_1(BC045889|pid:none) Danio rerio actin-like 6A, mRNA (c... 280 9e-74
BC152062_1(BC152062|pid:none) Xenopus tropicalis hypothetical pr... 279 2e-73
AY394958_1(AY394958|pid:none) Danio rerio clone RK053A3F02 BAF53... 277 8e-73
AY099520_1(AY099520|pid:none) Danio rerio BRG1/brm-associated fa... 276 1e-72
BC064183_1(BC064183|pid:none) Xenopus tropicalis actin-like 6A, ... 276 1e-72
(Q4R333) RecName: Full=Actin-like protein 6A; &AB179435_1(AB179... 274 5e-72
AL136608_1(AL136608|pid:none) Homo sapiens mRNA; cDNA DKFZp564J2... 274 5e-72
(O96019) RecName: Full=Actin-like protein 6A; AltName: Full=53 k... 274 7e-72
AF041476_1(AF041476|pid:none) Mus musculus BAF53a (Baf53a) mRNA,... 273 9e-72
(Q9Z2N8) RecName: Full=Actin-like protein 6A; AltName: Full=53 k... 273 9e-72
BC098698_1(BC098698|pid:none) Rattus norvegicus actin-like 6A, m... 273 1e-71
BC134613_1(BC134613|pid:none) Bos taurus actin-like 6A, mRNA (cD... 271 4e-71
AK090154_1(AK090154|pid:none) Mus musculus 13 days embryo brain ... 268 3e-70
D63852_1(D63852|pid:none) Cyanidium caldarium gene for actin, co... 263 2e-68
(Q03341) RecName: Full=Actin-2; &L07774_1(L07774|pid:none) 258 3e-67
BT075908_1(BT075908|pid:none) Caligus rogercresseyi clone crog-e... 257 8e-67
(Q9P4D1) RecName: Full=Actin; &AF216956_1(AF216956|pid:none) &F... 257 8e-67
AB013098_1(AB013098|pid:none) Nannochloris bacillaris nbact gene... 256 1e-66
EF134084_1(EF134084|pid:none) Karlodinium micrum strain CCMP1975... 256 1e-66
AY026072_1(AY026072|pid:none) Monosiga brevicollis actin mRNA, c... 256 2e-66
(P10671) RecName: Full=Actin-1/3; &AY049293_1(AY049293|pid:none... 255 2e-66
FN357409_26(FN357409|pid:none) Schistosoma mansoni genome sequen... 255 2e-66
(P53470) RecName: Full=Actin-1; &FN357409_27(FN357409|pid:none)... 255 3e-66
EU742733_1(EU742733|pid:none) Amphidinium carterae strain CCMP13... 255 3e-66
(P14235) RecName: Full=Actin; &S07639(S07639) &X16377_1(X16377|... 254 4e-66
DQ787858_1(DQ787858|pid:none) Mizuhopecten yessoensis beta-actin... 254 4e-66
AY382282_1(AY382282|pid:none) Physcomitrella patens actin 1 (Act... 254 5e-66
EU742721_1(EU742721|pid:none) Amphidinium carterae strain CCMP13... 254 5e-66
EU742742_1(EU742742|pid:none) Amphidinium carterae strain CCMP13... 254 5e-66
(Q8I4X0) RecName: Full=Actin-1; AltName: Full=Actin I; &AE01418... 254 5e-66
AF421536_1(AF421536|pid:none) Crypthecodinium cohnii actin mRNA,... 254 7e-66
EU742740_1(EU742740|pid:none) Amphidinium carterae strain CCMP13... 254 7e-66
(Q8SWN8) RecName: Full=Actin; 254 7e-66
(P02578) RecName: Full=Actin-1; &ATAX(A92886;A03004) &V00002_1(... 253 9e-66
EU742724_1(EU742724|pid:none) Amphidinium carterae strain CCMP13... 253 1e-65
ATMUM1(JA0066;S68111) actin - Arabidopsis thaliana &M20016_1(M2... 253 1e-65
EU742741_1(EU742741|pid:none) Amphidinium carterae strain CCMP13... 253 1e-65
(P79818) RecName: Full=Actin, cytoplasmic 1; AltName: Full=Beta-... 253 1e-65
(Q7RME1) RecName: Full=Actin-1; AltName: Full=Actin I; 253 1e-65
AB111103_1(AB111103|pid:none) Candida boidinii ACT1 gene for act... 253 1e-65
AY817141_1(AY817141|pid:none) Apriona germari actin mRNA, comple... 253 1e-65
AM910996_627(AM910996|pid:none) Plasmodium knowlesi strain H chr... 253 2e-65
EU742745_1(EU742745|pid:none) Amphidinium carterae strain CCMP13... 253 2e-65
(P69002) RecName: Full=Actin CyI, cytoplasmic; &(P69003) RecNam... 253 2e-65
EF133869_1(EF133869|pid:none) Alexandrium fundyense strain GT-CA... 253 2e-65
(P17304) RecName: Full=Actin, muscle; &S12730(S12730) &X52868_1... 252 2e-65
AY742219_1(AY742219|pid:none) Saccharum officinarum actin mRNA, ... 252 2e-65
EU143771_1(EU143771|pid:none) Poecilia reticulata beta-actin gen... 252 2e-65
(P69004) RecName: Full=Actin-15B; &(P69005) RecName: Fu &M35323... 252 2e-65
ATURS(A03001;A60829) actin CyI - sea urchin (Strongylocentrotus ... 252 2e-65
BT049962_1(BT049962|pid:none) Salmo salar clone ssal-evd-503-108... 252 2e-65
ATRTC(A38571;A02999)actin beta - rat 252 2e-65
AM992961_1(AM992961|pid:none) Debaryomyces hansenii var. hanseni... 252 2e-65
(Q964E1) RecName: Full=Actin, cytoplasmic; &AF329439_1(AF329439... 252 3e-65
(Q91ZK5) RecName: Full=Actin, cytoplasmic 1; AltName: Full=Beta-... 252 3e-65
AF288226_1(AF288226|pid:none) Setaria italica actin mRNA, comple... 252 3e-65
(P10981) RecName: Full=Actin-87E; &AE014297_1743(AE014297|pid:n... 252 3e-65
BT052195_1(BT052195|pid:none) Medicago truncatula clone MTYF9_FA... 252 3e-65
AJ292554_1(AJ292554|pid:none) Daphnia magna mRNA for actin. 252 3e-65
(Q26065) RecName: Full=Actin, adductor muscle; &U55046_1(U55046... 252 3e-65
EU825991_1(EU825991|pid:none) Mantichorula semenowi beta-actin m... 252 3e-65
AY588061_1(AY588061|pid:none) Homalodisca coagulata putative mus... 252 3e-65
ATBOB(E14185;A39105;A02999;A14185) actin beta - bovine (tentativ... 252 3e-65
AY145451_1(AY145451|pid:none) Hordeum vulgare actin mRNA, comple... 252 3e-65
(P53492) RecName: Full=Actin-7; AltName: Full=Actin-2; &AB01689... 252 3e-65
BC016045_1(BC016045|pid:none) Homo sapiens actin, beta, mRNA (cD... 252 3e-65
DQ058212_1(DQ058212|pid:none) Phascolarctos cinereus beta-actin ... 252 3e-65
EF667345_1(EF667345|pid:none) Anas platyrhynchos beta-actin (ACT... 252 3e-65
AY550069_1(AY550069|pid:none) Sus scrofa cytoskeletal beta actin... 252 3e-65
(O18840) RecName: Full=Actin, cytoplasmic 1; AltName: Full=Beta-... 252 3e-65
AY134752_1(AY134752|pid:none) Phalaenopsis hybrid cultivar actin... 252 3e-65
AY550991_1(AY550991|pid:none) Elaeis guineensis actine (ACT1) mR... 252 3e-65
AY335441_1(AY335441|pid:none) Chlamys farreri actin mRNA, comple... 251 3e-65
AF177282_1(AF177282|pid:none) Plasmodium falciparum isolate FCC1... 251 3e-65
AB264725_1(AB264725|pid:none) Papilio xuthus mRNA for actin, com... 251 3e-65
AK223032_1(AK223032|pid:none) Homo sapiens mRNA for beta actin v... 251 3e-65
AB231899_1(AB231899|pid:none) Symbiodinium sp. PL-TS-1 SyAct-A1 ... 251 3e-65
AF285176_1(AF285176|pid:none) Musa ABB Group actin (ACT1) gene, ... 251 3e-65
S43509(S43509) actin - California sea hare &U01352_1(U01352|pid... 251 3e-65
EU742734_1(EU742734|pid:none) Amphidinium carterae strain CCMP13... 251 3e-65
AB086826_1(AB086826|pid:none) Galaxea fascicularis LGfact mRNA f... 251 3e-65
AK167960_1(AK167960|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 251 3e-65
(Q6NVA9) RecName: Full=Actin, cytoplasmic 1; AltName: Full=Beta-... 251 3e-65
AC120533_12(AC120533|pid:none) Oryza sativa (japonica cultivar-g... 251 3e-65
EU742735_1(EU742735|pid:none) Amphidinium carterae strain CCMP13... 251 3e-65
AK150866_1(AK150866|pid:none) Mus musculus bone marrow macrophag... 251 5e-65
EU742723_1(EU742723|pid:none) Amphidinium carterae strain CCMP13... 251 5e-65
DQ007446_1(DQ007446|pid:none) Cirrhinus molitorella beta-actin m... 251 5e-65
AK151468_1(AK151468|pid:none) Mus musculus bone marrow macrophag... 251 5e-65
AK147787_1(AK147787|pid:none) Mus musculus melanocyte cDNA, RIKE... 251 5e-65
(O42161) RecName: Full=Actin, cytoplasmic 1; AltName: Full=Beta-... 251 5e-65
BT039716_1(BT039716|pid:none) Zea mays full-length cDNA clone ZM... 251 5e-65
(P83967) RecName: Full=Actin, indirect flight muscle; AltName: F... 251 5e-65
(P84336) RecName: Full=Actin, cytoplasmic 1; AltName: Full=Beta-... 251 5e-65
AY491380_1(AY491380|pid:none) Acanthopagrus schlegelii beta acti... 251 5e-65
DQ369967_1(DQ369967|pid:none) Ciona intestinalis actin mRNA, com... 251 5e-65
(Q964E3) RecName: Full=Actin, cytoplasmic; &AF329437_1(AF329437... 251 5e-65
AM992970_1(AM992970|pid:none) Candida famata var. flareri act1 g... 251 6e-65
AY547732_1(AY547732|pid:none) Ornithodoros moubata actin mRNA, c... 251 6e-65
X00182_1(X00182|pid:none) Gallus gallus cytoplasmic beta-actin g... 251 6e-65
AB199890_1(AB199890|pid:none) Pagrus major gene for beta cytopla... 251 6e-65
AY382283_1(AY382283|pid:none) Physcomitrella patens actin 3 (Act... 251 6e-65
(P53457) RecName: Full=Actin-3; &U27834_1(U27834|pid:none) 251 6e-65
(Q93129) RecName: Full=Actin, cytoplasmic; AltName: Full=BbCA1; ... 251 6e-65
AF135499_1(AF135499|pid:none) Platichthys flesus beta-actin gene... 251 6e-65
(P10984) RecName: Full=Actin-2; &T24448(T24448) &Z81584_9(Z8158... 251 6e-65
EU980397_1(EU980397|pid:none) Naegleria fowleri strain Nf 69 act... 251 6e-65
(Q964E2) RecName: Full=Actin, cytoplasmic; &AF329438_1(AF329438... 251 6e-65
(Q9UVF3) RecName: Full=Actin; &CR382130_334(CR382130|pid:none) 251 6e-65
AF358263_1(AF358263|pid:none) Drosophila virilis actin E2 gene, ... 251 6e-65
T51178(T51178) actin ACT2 [imported] - Striga asiatica &U68462_... 251 6e-65
EU128481_1(EU128481|pid:none) Tanichthys albonubes beta-actin mR... 251 6e-65
(P45886) RecName: Full=Actin-3, muscle-specific; &L12255_1(L122... 251 6e-65
EU128482_1(EU128482|pid:none) Tanichthys albonubes beta-actin ge... 251 6e-65
AF082863_1(AF082863|pid:none) Dreissena polymorpha cytoplasmic a... 251 6e-65
J04181_1(J04181|pid:none) Mouse A-X actin mRNA, complete cds. 250 8e-65
(P10988) RecName: Full=Actin-1; AltName: Full=Actin I; &A54496(... 250 8e-65
(P18600) RecName: Full=Actin, clone 205; &S11450(S11450) &X5260... 250 8e-65
U37719_1(U37719|pid:none) Naegleria fowleri actin gene, complete... 250 8e-65
AY382284_1(AY382284|pid:none) Physcomitrella patens actin 5 (Act... 250 8e-65
BT060552_1(BT060552|pid:none) Zea mays full-length cDNA clone ZM... 250 8e-65
AY382285_1(AY382285|pid:none) Physcomitrella patens actin 7 (Act... 250 8e-65
BT041049_1(BT041049|pid:none) Zea mays full-length cDNA clone ZM... 250 8e-65
(P07836) RecName: Full=Actin, muscle-type A1; &S09059(S09059) &... 250 8e-65
AK151385_1(AK151385|pid:none) Mus musculus bone marrow macrophag... 250 8e-65
AF076516_1(AF076516|pid:none) Molgula oculata clone MocuCA1 cyto... 250 8e-65
AY372368_1(AY372368|pid:none) Trifolium pratense actin mRNA, com... 250 8e-65
FJ554633_1(FJ554633|pid:none) Agelena silvatica actin mRNA, comp... 250 8e-65
AY289764_1(AY289764|pid:none) Aedes aegypti muscle-specific acti... 250 8e-65
S16709(S16709;S08596) actin 2 - Caenorhabditis elegans &X16797_... 250 1e-64
(P92182) RecName: Full=Actin-1; &JC5227(JC5227) &X96512_1(X9651... 250 1e-64
(P15475) RecName: Full=Actin, cytoplasmic 1; AltName: Full=Beta ... 250 1e-64
(P18601) RecName: Full=Actin, clone 211; &S11451(S11451) &X5260... 250 1e-64
AF393832_1(AF393832|pid:none) Morulius calbasu beta-actin mRNA, ... 250 1e-64
EU035314_1(EU035314|pid:none) Mamestra brassicae beta actin mRNA... 250 1e-64
(P92179) RecName: Full=Actin, cytoplasmic; &AF329436_1(AF329436... 250 1e-64
EF144345_1(EF144345|pid:none) Populus trichocarpa clone PX0015_O... 250 1e-64
(O17320) RecName: Full=Actin; &AF026063_1(AF026063|pid:none) &F... 250 1e-64
AB283042_1(AB283042|pid:none) Orgyia thyellina OtAct mRNA for cy... 250 1e-64
AF301605_1(AF301605|pid:none) Hypophthalmichthys molitrix beta-a... 250 1e-64
AJ537421_1(AJ537421|pid:none) Dicentrarchus labrax mRNA for beta... 250 1e-64
(P53458) RecName: Full=Actin-5; Flags: Fragment; &U27836_1(U278... 250 1e-64
(P30171) RecName: Full=Actin-97; &S20098(S20098) &X55751_1(X557... 250 1e-64
AJ297725_1(AJ297725|pid:none) Ciona intestinalis mRNA for putati... 250 1e-64
EF144249_1(EF144249|pid:none) Populus trichocarpa clone PX0011_N... 250 1e-64
AY251793_1(AY251793|pid:none) Bigelowiella natans ubiquitin/acti... 250 1e-64
EF672732_1(EF672732|pid:none) Musa acuminata actin (ACT1) gene, ... 250 1e-64
CU928171_791(CU928171|pid:none) Kluyveromyces thermotolerans str... 250 1e-64
(O16808) RecName: Full=Actin; &AF017427_1(AF017427|pid:none) 250 1e-64
AF466279_1(AF466279|pid:none) Tigriopus japonicus beta-actin gen... 250 1e-64
(P41339) RecName: Full=Actin, acrosomal process isoform; AltName... 250 1e-64
EF678025_1(EF678025|pid:none) Picea sitchensis clone WS02818_M15... 250 1e-64
AY870652_1(AY870652|pid:none) Isatis tinctoria actin mRNA, compl... 250 1e-64
(Q964D9) RecName: Full=Actin, cytoplasmic; &AF329441_1(AF329441... 249 1e-64
(P27131) RecName: Full=Actin-1; AltName: Full=Actin I; &M90311_... 249 1e-64
BT074966_1(BT074966|pid:none) Osmerus mordax clone omor-eva-519-... 249 1e-64
DQ174766_1(DQ174766|pid:none) Symbiodinium sp. clade C actin gen... 249 1e-64
AM475102_1(AM475102|pid:none) Vitis vinifera contig VV78X148227.... 249 1e-64
AY305724_1(AY305724|pid:none) Gossypium hirsutum actin (ACT2) mR... 249 1e-64
(Q4Z1L3) RecName: Full=Actin-1; AltName: Full=Actin I; 249 1e-64
DQ656598_1(DQ656598|pid:none) Spinibarbus denticulatus beta-acti... 249 1e-64
EU952376_1(EU952376|pid:none) Zea mays clone 1278863 actin-2 mRN... 249 1e-64
(P53506) RecName: Full=Actin, cytoplasmic type 8; &M24770_1(M24... 249 1e-64
(P45887) RecName: Full=Actin-5, muscle-specific; &L12256_1(L122... 249 1e-64
(P20904) RecName: Full=Actin; &M33963_1(M33963|pid:none) &S1412... 249 1e-64
FJ669294_1(FJ669294|pid:none) Crassostrea gigas isolate IV_24 ac... 249 1e-64
AF302045_1(AF302045|pid:none) Rhodeus notatus beta-actin gene, c... 249 1e-64
(P12716) RecName: Full=Actin, cytoplasmic; &JS0189(JS0189) &M26... 249 1e-64
AK151386_1(AK151386|pid:none) Mus musculus bone marrow macrophag... 249 2e-64
AY272628_1(AY272628|pid:none) Rana lessonae cytoplasmic actin ty... 249 2e-64
AE013599_2610(AE013599|pid:none) Drosophila melanogaster chromos... 249 2e-64
ATBOG(B14185;A02999) actin gamma - bovine (tentative sequence) ... 249 2e-64
AK223055_1(AK223055|pid:none) Homo sapiens mRNA for beta actin v... 249 2e-64
EU742728_1(EU742728|pid:none) Amphidinium carterae strain CCMP13... 249 2e-64
(P41340) RecName: Full=Actin-3; &S49480(S49480) &Z38130_1(Z3813... 249 2e-64
EU247116_1(EU247116|pid:none) Lycosa singoriensis actin 5C mRNA,... 249 2e-64
(Q5JAK2) RecName: Full=Actin, cytoplasmic 2; AltName: Full=Gamma... 249 2e-64
(P41112) RecName: Full=Actin-1/2; &JN0833(JN0833) &X69058_1(X69... 249 2e-64
DQ657949_1(DQ657949|pid:none) Aedes albopictus actin mRNA, compl... 249 2e-64
(P10986) RecName: Full=Actin-4; &AY372758_1(AY372758|pid:none) ... 249 2e-64
AY892296_1(AY892296|pid:none) Synthetic construct Homo sapiens c... 249 2e-64
AB250390_1(AB250390|pid:none) Zygosaccharomyces rouxii ACT1 mRNA... 249 2e-64
AF200957_1(AF200957|pid:none) Rhynchocypris oxycephalus beta-act... 249 2e-64
EU742730_1(EU742730|pid:none) Amphidinium carterae strain CCMP13... 249 2e-64
(P41113) RecName: Full=Actin-3; &JN0832(JN0832) &X69060_1(X6906... 249 2e-64
(P53497) RecName: Full=Actin-12; &AL133314_4(AL133314|pid:none)... 249 2e-64
AM429188_1(AM429188|pid:none) Vitis vinifera contig VV78X040868.... 249 2e-64
(Q6P378) RecName: Full=Actin, cytoplasmic 2; AltName: Full=Gamma... 249 2e-64
AB060287_1(AB060287|pid:none) Lampetra japonica LjCA1 mRNA for c... 249 2e-64
BT061870_1(BT061870|pid:none) Zea mays full-length cDNA clone ZM... 249 2e-64
EU019716_1(EU019716|pid:none) Haemaphysalis longicornis strain g... 249 2e-64
EU244396_1(EU244396|pid:none) Haliotis diversicolor clone HDr4CJ... 249 2e-64
(P18603) RecName: Full=Actin, clone 403; &BC107847_1(BC107847|p... 249 2e-64
AY088111_1(AY088111|pid:none) Arabidopsis thaliana clone 41421 m... 249 2e-64
EU234531_1(EU234531|pid:none) Crassostrea ariakensis beta-actin ... 249 2e-64
A48449(A48449)Actin-1A - nematode (Onchocerca volvulus) 249 2e-64
AY305725_1(AY305725|pid:none) Gossypium hirsutum actin (ACT3) mR... 249 2e-64
AJ889837_1(AJ889837|pid:none) Ixodes ricinus mRNA for actin (act... 249 2e-64
T51177(T51177) actin [imported] - Striga asiatica &U68461_1(U68... 249 2e-64
AB158612_1(AB158612|pid:none) Nicotiana tabacum mRNA for actin, ... 249 2e-64
FJ205611_1(FJ205611|pid:none) Acipenser transmontanus beta-actin... 249 2e-64
BT051890_1(BT051890|pid:none) Medicago truncatula clone MTYF5_F6... 249 2e-64
(P02574) RecName: Full=Actin, larval muscle; AltName: Full=Actin... 249 2e-64
FJ669289_1(FJ669289|pid:none) Crassostrea gigas isolate I_15 act... 249 2e-64
(P91754) RecName: Full=Actin; Flags: Fragment; &Y09623_1(Y09623... 249 2e-64
AF079359_1(AF079359|pid:none) Setaria digitata actin gene, compl... 249 2e-64
(A3C6D7) RecName: Full=Actin-2; &(P0C539) RecName: Fu &AC087192... 248 3e-64
EF144552_1(EF144552|pid:none) Populus trichocarpa clone WS01110_... 248 3e-64
AB032361_1(AB032361|pid:none) Mimosa pudica mRNA for actin isofo... 248 3e-64
BT071276_1(BT071276|pid:none) Picea sitchensis clone WS02817_N24... 248 3e-64
(P53459) RecName: Full=Actin-6; Flags: Fragment; &U27837_1(U278... 248 3e-64
(P04829) RecName: Full=Actin, cytoplasmic A3; &U49854_1(U49854|... 248 3e-64
AB208021_1(AB208021|pid:none) Ornithodoros moubata mRNA for acti... 248 3e-64
(P10983) RecName: Full=Actin-1/3; &S16710(S16710;S05516;S07251;... 248 3e-64
AF182715_1(AF182715|pid:none) Lymantria dispar actin mRNA, compl... 248 3e-64
AF416454_1(AF416454|pid:none) Passer domesticus beta-actin mRNA,... 248 3e-64
AM236595_1(AM236595|pid:none) Haliotis tuberculata mRNA for acti... 248 3e-64
K00670_1(K00670|pid:none) D.melanogaster actin gene, complete cd... 248 3e-64
EU742736_1(EU742736|pid:none) Amphidinium carterae strain CCMP13... 248 3e-64
A25135(A25135)actin A3, cytosolic - silkworm 248 4e-64
(P02576) RecName: Full=Actin, plasmodial isoform; &ATFY(A29044;... 248 4e-64
AY703989_1(AY703989|pid:none) Aplysia californica actin ovestest... 248 4e-64
EF490893_1(EF490893|pid:none) Lepeophtheirus salmonis clone LS00... 248 4e-64
X16798_1(X16798|pid:none) C.elegans act3 gene. 248 4e-64
(P53478) RecName: Full=Actin, cytoplasmic type 5; &X02648_1(X02... 248 4e-64
(P53471) RecName: Full=Actin-2; &AF223400_1(AF223400|pid:none) ... 248 4e-64
FJ485727_1(FJ485727|pid:none) Caragana korshinskii actin (ACT1) ... 248 4e-64
EU742720_1(EU742720|pid:none) Amphidinium carterae strain CCMP13... 248 4e-64
(Q8BFZ3) RecName: Full=Beta-actin-like protein 2; AltName: Full=... 248 4e-64
FJ669288_1(FJ669288|pid:none) Crassostrea gigas isolate I_8 acti... 248 4e-64
(Q05214) RecName: Full=Actin; &S31933(S35257;S31933) &X63603_1(... 248 4e-64
(Q25010) RecName: Full=Actin, cytoplasmic A3a; &AF286059_1(AF28... 248 4e-64
BC045879_1(BC045879|pid:none) Danio rerio bactin2, mRNA (cDNA cl... 248 4e-64
(P10365) RecName: Full=Actin; &S03126(S03126) &X07463_1(X07463|... 248 4e-64
FJ869869_1(FJ869869|pid:none) Picea abies actin 2 mRNA, complete... 248 4e-64
(P30167) RecName: Full=Actin-58; &S20094(S20094) &X55749_1(X557... 248 5e-64
(P30163) RecName: Full=Actin-2; &M84915_1(M84915|pid:none) 248 5e-64
AF270649_1(AF270649|pid:none) Misgurnus mizolepis beta-actin gen... 248 5e-64
(P10987) RecName: Full=Actin-5C; &(P84183) RecName: Fu &(P84184... 248 5e-64
FJ560483_1(FJ560483|pid:none) Gossypium hirsutum actin 1 mRNA, c... 248 5e-64
DQ485686_1(DQ485686|pid:none) Solea senegalensis beta-actin mRNA... 248 5e-64
(Q553U6) RecName: Full=Putative actin-22; &AC116305_3(AC116305|... 248 5e-64
(P53464) RecName: Full=Actin, cytoskeletal; AltName: Full=M; &U... 248 5e-64
(P49128) RecName: Full=Actin-1; 248 5e-64
J01168_1(J01168|pid:none) Strongylocentrotus purpuratus actin 2 ... 248 5e-64
EF144294_1(EF144294|pid:none) Populus trichocarpa clone PX0015_H... 248 5e-64
(P02572) RecName: Full=Actin-42A; &AE013599_115(AE013599|pid:no... 248 5e-64
U22507_1(U22507|pid:none) Heliocidaris tuberculata cytoplasmic a... 248 5e-64
AB039726_1(AB039726|pid:none) Carassius auratus mRNA for beta ac... 248 5e-64
EU624346_1(EU624346|pid:none) Sarcoptes scabiei type hominis act... 247 7e-64
EU169821_1(EU169821|pid:none) Dictyocaulus viviparus actin varia... 247 7e-64
EF063572_1(EF063572|pid:none) Actinidia deliciosa ACT1 (ACT1) mR... 247 7e-64
(P17126) RecName: Full=Actin, non-muscle 6.2; &JQ0154(JQ0154) &... 247 7e-64
(P30162) RecName: Full=Actin-1; &M84916_1(M84916|pid:none) 247 7e-64
AY305734_1(AY305734|pid:none) Gossypium hirsutum actin (ACT13) m... 247 7e-64
(P53463) RecName: Full=Actin, cytoskeletal; AltName: Full=M; &U... 247 7e-64
AF172094_1(AF172094|pid:none) Picea rubens actin mRNA, complete ... 247 7e-64
(P30173) RecName: Full=Actin-101; &S20093(S20093;S20092) &X5575... 247 7e-64
A32798(A32798) actin - yeast (Kluyveromyces marxianus var. lacti... 247 9e-64
(P12433) RecName: Full=Actin B; &M20310_2(M20310|pid:none) 247 9e-64
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli... 247 9e-64
EU601173_1(EU601173|pid:none) Agrotis ipsilon cytoplasmic actin ... 247 9e-64
FJ372564_1(FJ372564|pid:none) Sedum alfredii isolate Nheact1 act... 247 9e-64
AM465189_1(AM465189|pid:none) Vitis vinifera contig VV78X204398.... 247 9e-64
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com... 247 9e-64
DQ023309_1(DQ023309|pid:none) Culex pipiens pipiens actin mRNA, ... 247 9e-64
X04507_1(X04507|pid:none) Bombyx mori cytoplasmic actin gene A3. 247 9e-64
(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa... 246 1e-63
AY507963_1(AY507963|pid:none) Spodoptera exigua actin mRNA, comp... 246 1e-63
CR940348_56(CR940348|pid:none) Theileria annulata strain Ankara ... 246 1e-63
EU301432_1(EU301432|pid:none) Culex nigripalpus actin (Act-1) ge... 246 1e-63
AB169918_1(AB169918|pid:none) Macaca fascicularis brain cDNA, cl... 246 1e-63
AB097503_1(AB097503|pid:none) Ulva pertusa actin mRNA for beta-a... 246 1e-63
(P53689) RecName: Full=Actin; &A73764_1(A73764|pid:none) &S7037... 246 1e-63
DQ333330_1(DQ333330|pid:none) Hirudo medicinalis cytoplasmic act... 246 1e-63
EU960271_1(EU960271|pid:none) Zea mays clone 223048 actin-1 mRNA... 246 1e-63
AC134930_12(AC134930|pid:none) Oryza sativa (japonica cultivar-g... 246 1e-63
BC108543_1(BC108543|pid:none) Xenopus laevis Actin, cytoplasmic ... 246 1e-63
EF134225_1(EF134225|pid:none) Noctiluca scintillans isolate Nsc-... 246 1e-63
FJ455439_1(FJ455439|pid:none) Holothuria glaberrima actin isofor... 246 1e-63
M30511_1(M30511|pid:none) Sea urchin (S.purpuratus) cytoskeletal... 246 2e-63
U90325_1(U90325|pid:none) Cyanophora paradoxa actin gene, partia... 246 2e-63
AY305733_1(AY305733|pid:none) Gossypium hirsutum actin (ACT14) m... 246 2e-63
AY525329_1(AY525329|pid:none) Trichophyton rubrum actin (ACT) ge... 246 2e-63
CR954256_1(CR954256|pid:none) Anopheles gambiae Pen-1 region; BA... 246 2e-63
(P50138) RecName: Full=Actin; &S42103(S42103) &X77857_1(X77857|... 246 2e-63
AB036756_1(AB036756|pid:none) Pagrus major mRNA for B-actin, com... 245 2e-63
AY156508_1(AY156508|pid:none) Myxobolus cerebralis beta-actin mR... 245 2e-63
DQ386914_1(DQ386914|pid:none) Lygus lineolaris putative actin mR... 245 2e-63
(P90689) RecName: Full=Actin; &Z85981_1(Z85981|pid:none) 245 2e-63
AF168615_1(AF168615|pid:none) Rivulus marmoratus beta-actin gene... 245 2e-63
U52519_1(U52519|pid:none) Dugesia tigrina actin mRNA, complete c... 245 2e-63
AF085345_1(AF085345|pid:none) Pythium splendens actin mRNA, comp... 245 2e-63
AF091809_1(AF091809|pid:none) Anemia phyllitidis actin 2 mRNA, c... 245 2e-63
AB179839_1(AB179839|pid:none) Seriola quinqueradiata ACTB mRNA f... 245 2e-63
AY531222_1(AY531222|pid:none) Aedes aegypti pupal-specific fligh... 245 3e-63
DQ677524_1(DQ677524|pid:none) Phytophthora melonis actin (actB) ... 245 3e-63
EU100952_1(EU100952|pid:none) Bursaphelenchus xylophilus actin m... 245 3e-63
AF318603_1(AF318603|pid:none) Heterodera glycines actin 1 mRNA, ... 245 3e-63
(P53455) RecName: Full=Actin; &U17498_1(U17498|pid:none) 244 4e-63
X13055_1(X13055|pid:none) Murine mRNA for cytoplasmic gamma-actin. 244 4e-63
FJ372563_1(FJ372563|pid:none) Sedum alfredii isolate Heact1 acti... 244 4e-63
(P63256) RecName: Full=Actin, cytoplasmic 2; AltName: Full=Gamma... 244 4e-63
(P46258) RecName: Full=Actin-3; &S58316(S58316) &X90378_1(X9037... 244 4e-63
AY305737_1(AY305737|pid:none) Gossypium hirsutum actin (ACT9) mR... 244 4e-63
AB117093_1(AB117093|pid:none) Cynops ensicauda b-actin mRNA for ... 244 4e-63
(Q9Y702) RecName: Full=Actin-1; AltName: Full=Beta-actin; &AB02... 244 4e-63
AY857865_1(AY857865|pid:none) Linum usitatissimum actin (Act1) m... 244 4e-63
AF163669_1(AF163669|pid:none) Dunaliella salina actin mRNA, comp... 244 6e-63
BT077850_1(BT077850|pid:none) Lepeophtheirus salmonis clone lsal... 244 6e-63
AB126237_1(AB126237|pid:none) Porphyra yezoensis PyACT3 mRNA for... 244 6e-63
FJ696416_1(FJ696416|pid:none) Carica papaya actin mRNA, complete... 244 6e-63
BT077399_1(BT077399|pid:none) Lepeophtheirus salmonis clone lsal... 244 6e-63
(Q8ILW9) RecName: Full=Actin-2; AltName: Full=Actin II; &AE0141... 244 6e-63
AF100986_1(AF100986|pid:none) Penaeus monodon actin 1 (act1) mRN... 244 7e-63
(P53461) RecName: Full=Actin, nonmuscle; &D45164_1(D45164|pid:n... 244 7e-63
(P13363) RecName: Full=Actin; &ATJN(S14894;S06062) &X15900_1(X1... 244 7e-63
DQ017265_1(DQ017265|pid:none) Orientobilharzia turkestanicum act... 244 7e-63
FJ560484_1(FJ560484|pid:none) Gossypium hirsutum actin 2 mRNA, c... 244 7e-63
AB267840_1(AB267840|pid:none) Dicyema acuticephalum actin2 mRNA ... 244 7e-63
AJ000376_1(AJ000376|pid:none) Helobdella triserialis mRNA for ac... 243 9e-63
AY305729_1(AY305729|pid:none) Gossypium hirsutum actin (ACT7) mR... 243 9e-63
BT076643_1(BT076643|pid:none) Caligus rogercresseyi clone crog-e... 243 9e-63
DQ665650_1(DQ665650|pid:none) Torenia fournieri actin 2 (ACT2) g... 243 9e-63
AB292768_1(AB292768|pid:none) Porphyra yezoensis PyACT2 mRNA for... 243 9e-63
AY161281_1(AY161281|pid:none) Globodera rostochiensis actin 2 mR... 243 9e-63
AF234528_1(AF234528|pid:none) Avena nuda actin 1 gene, complete ... 243 9e-63
AM411663_1(AM411663|pid:none) Plasmodiophora brassicae actII gen... 243 1e-62
AY294156_1(AY294156|pid:none) Pelomyxa palustris actin mRNA, com... 243 1e-62
(O18500) RecName: Full=Actin-2; &Y13665_1(Y13665|pid:none) 243 1e-62
AY898751_1(AY898751|pid:none) Ixodes ricinus actin mRNA, partial... 243 1e-62
AB292769_1(AB292769|pid:none) Porphyra yezoensis PyACT4 mRNA for... 243 1e-62
AY813626_1(AY813626|pid:none) Schistosoma japonicum clone SJCHGC... 243 1e-62
EF553460_1(EF553460|pid:none) Nitzschia closterium f. minutissim... 243 1e-62
AF282624_1(AF282624|pid:none) Helianthus annuus actin mRNA, comp... 243 1e-62
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1; 243 1e-62
AY921238_1(AY921238|pid:none) Haliotis iris actin A2 gene, compl... 243 2e-62
(P53480) RecName: Full=Actin, alpha cardiac; &AB016259_1(AB0162... 243 2e-62
AY305728_1(AY305728|pid:none) Gossypium hirsutum actin (ACT6) mR... 243 2e-62
BC071386_1(BC071386|pid:none) Danio rerio zgc:86709, mRNA (cDNA ... 243 2e-62
EF553461_1(EF553461|pid:none) Phaeodactylum tricornutum strain C... 243 2e-62
(P30168) RecName: Full=Actin-71; &S20095(S20095) &X55750_1(X557... 243 2e-62
AY251802_1(AY251802|pid:none) Gymnochlora stellata ubiquitin/act... 243 2e-62
(P12717) RecName: Full=Actin, muscle; &JS0190(JS0190) &M26500_1... 243 2e-62
(Q9Y707) RecName: Full=Actin-2; &AF156258_1(AF156258|pid:none) ... 243 2e-62
EU529707_1(EU529707|pid:none) Cicer arietinum actin (ACT1) mRNA,... 242 2e-62
(P14883) RecName: Full=Actin-2; AltName: Full=Actin II; &A54509... 242 2e-62
AY297438_1(AY297438|pid:none) Aiptasia pulchella beta actin mRNA... 242 2e-62
D84318_1(D84318|pid:none) Schizosaccharomyces pombe cps8 gene fo... 242 2e-62
AY904067_1(AY904067|pid:none) Musa acuminata actin 2 mRNA, compl... 242 2e-62
(Q4YU79) RecName: Full=Actin-2; AltName: Full=Actin II; 242 2e-62
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum) 242 2e-62
(P68140) RecName: Full=Actin, alpha skeletal muscle A; AltName: ... 242 3e-62
AY395871_1(AY395871|pid:none) Cyprinus carpio skeletal muscle ac... 242 3e-62
X15865_1(X15865|pid:none) O.sativa RAc1 gene for actin. 242 3e-62
FJ217207_1(FJ217207|pid:none) Homarus americanus skeletal muscle... 242 3e-62
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti... 242 3e-62
AF090969_1(AF090969|pid:none) Selaginella apoda actin (Ac2) gene... 242 3e-62
BT041024_1(BT041024|pid:none) Zea mays full-length cDNA clone ZM... 242 3e-62
BC046739_1(BC046739|pid:none) Xenopus laevis similar to actin al... 241 4e-62
(P10995) RecName: Full=Actin, alpha sarcomeric/cardiac; AltName:... 241 4e-62
(P26183) RecName: Full=Actin; &A45634(A45634) &M86241_1(M86241|... 241 4e-62
(P53499) RecName: Full=Actin; &S57262(S57262;S57263) &U03676_1(... 241 4e-62
(O65316) RecName: Full=Actin; &AF061020_1(AF061020|pid:none) 241 5e-62
AF090970_1(AF090970|pid:none) Cosmarium botrytis actin gene, par... 241 5e-62
AK146899_1(AK146899|pid:none) Mus musculus 17 days embryo heart ... 241 5e-62
(P68032) RecName: Full=Actin, alpha cardiac muscle 1; AltName: F... 241 5e-62
(P30164) RecName: Full=Actin-1; &S25488(S25488) &X67666_1(X6766... 241 5e-62
(P53491) RecName: Full=Actin; Flags: Fragment; &Z28698_1(Z28698... 241 5e-62
(Q90X97) RecName: Full=Actin, alpha skeletal muscle; AltName: Fu... 241 6e-62
(P53460) RecName: Full=Actin, muscle 1A; &D29014_1(D29014|pid:n... 241 6e-62
(P53479) RecName: Full=Actin, alpha skeletal muscle; AltName: Fu... 241 6e-62
AY893990_1(AY893990|pid:none) Synthetic construct Homo sapiens c... 241 6e-62
(P68133) RecName: Full=Actin, alpha skeletal muscle; AltName: Fu... 241 6e-62
EF086555_1(EF086555|pid:none) Picea sitchensis clone WS02917_J13... 241 6e-62
A54728(A54728) actin alpha, cardiac - mouse (fragment) &M15501_... 240 8e-62
ATRB(A92182;A14185;S65873;S70610;S44393;A02994)actin, skeletal m... 240 8e-62
AF388172_1(AF388172|pid:none) Scyliorhinus retifer fast muscle a... 240 8e-62
AB097686_1(AB097686|pid:none) Loxodes striatus mRNA for actin, c... 240 8e-62
AY309091_1(AY309091|pid:none) Cyprinus carpio skeletal muscle ac... 240 8e-62
(Q98972) RecName: Full=Actin, alpha skeletal muscle; AltName: Fu... 240 8e-62
BC071401_1(BC071401|pid:none) Danio rerio zgc:86725, mRNA (cDNA ... 240 8e-62
AB360966_1(AB360966|pid:none) Pagrus major ACTA1 gene for skelet... 240 8e-62
FJ716131_1(FJ716131|pid:none) Dicentrarchus labrax alpha actin m... 240 8e-62
BX323069_2(BX323069|pid:none) Zebrafish DNA sequence from clone ... 240 8e-62
(P04751) RecName: Full=Actin, alpha cardiac muscle 1; AltName: F... 240 1e-61
ATRZ1(S10020;S11871;S12474;S12490;PQ0142)actin 1 - rice 240 1e-61
AC155342_9(AC155342|pid:none) Brassica rapa subsp. pekinensis cl... 240 1e-61
AY222742_1(AY222742|pid:none) Danio rerio actin mRNA, complete c... 240 1e-61
U02285_1(U02285|pid:none) Bos taurus alpha skeletal actin precur... 240 1e-61
AK014307_1(AK014307|pid:none) Mus musculus 14, 17 days embryo he... 240 1e-61
AY294152_1(AY294152|pid:none) Mayorella sp. JJP-2003 actin mRNA,... 240 1e-61
AK290616_1(AK290616|pid:none) Homo sapiens cDNA FLJ78096 complet... 240 1e-61
AB360967_1(AB360967|pid:none) Pagrus major ACTA2 gene for skelet... 240 1e-61
AY039657_1(AY039657|pid:none) Chrysophrys auratus beta-actin mRN... 240 1e-61
AB039831_1(AB039831|pid:none) Porphyra yezoensis PyACT1 mRNA for... 240 1e-61
EU328529_1(EU328529|pid:none) Lolium temulentum actin (ACT11) mR... 239 1e-61
BC134665_1(BC134665|pid:none) Bos taurus actin, alpha 1, skeleta... 239 1e-61
(P53504) RecName: Full=Actin-1; &JE0147(JE0147;S47090) &X79378_... 239 1e-61
AY294153_1(AY294153|pid:none) Platyamoeba placida actin mRNA, pa... 239 1e-61
AY986487_1(AY986487|pid:none) Rana catesbeiana cardiac alpha act... 239 1e-61
BC072097_1(BC072097|pid:none) Xenopus laevis hypothetical protei... 239 1e-61
EF091838_1(EF091838|pid:none) Eubalaena glacialis beta-actin mRN... 239 1e-61
AB076674_1(AB076674|pid:none) Lethenteron japonicum LjMA1 mRNA f... 239 1e-61
AB052654_1(AB052654|pid:none) Lampetra japonica LjMA2 mRNA for m... 239 1e-61
ATHUSM(A35020;S03286;I54050;A02996) actin alpha 2, aortic smooth... 239 1e-61
AY891000_1(AY891000|pid:none) Synthetic construct Homo sapiens c... 239 1e-61
AB035660_1(AB035660|pid:none) Branchiostoma belcheri BbNA1 mRNA ... 239 2e-61
FJ217208_1(FJ217208|pid:none) Homarus americanus skeletal muscle... 239 2e-61
BC140575_1(BC140575|pid:none) Bos taurus actin, alpha 2, smooth ... 239 2e-61
EF544569_1(EF544569|pid:none) Amanita muscaria actin (act2) mRNA... 239 2e-61
AF284835_1(AF284835|pid:none) Guillardia theta actin mRNA, parti... 239 2e-61
ATBOSM(A02997;S13480)actin, aortic smooth muscle - bovine 239 2e-61
AY089535_1(AY089535|pid:none) Drosophila melanogaster LD04994 fu... 239 2e-61
AF180887_1(AF180887|pid:none) Danio rerio skeletal alpha1 actin ... 239 2e-61
(Q39758) RecName: Full=Actin; &X98885_1(X98885|pid:none) 239 2e-61
AY395870_1(AY395870|pid:none) Cyprinus carpio skeletal muscle al... 239 2e-61
AY524976_1(AY524976|pid:none) Cydia pomonella actin gene, partia... 239 2e-61
AF228714_1(AF228714|pid:none) Ictalurus punctatus alpha actin ge... 239 2e-61
X05393_1(X05393|pid:none) Xenopus tropicalis alpha2 gene for sar... 239 2e-61
(P30169) RecName: Full=Actin-75; &S20096(S20096) &X55753_1(X557... 239 2e-61
BC017450_1(BC017450|pid:none) Homo sapiens, clone IMAGE:3538275,... 239 2e-61
(Q9NJV4) RecName: Full=Actin-1; &AF101729_1(AF101729|pid:none) 239 2e-61
AB429227_1(AB429227|pid:none) Dicyema japonicum gene for actin, ... 239 2e-61
AF091810_1(AF091810|pid:none) Anemia phyllitidis actin 3 mRNA, c... 239 2e-61
BC075896_1(BC075896|pid:none) Danio rerio actin, alpha 2, smooth... 238 3e-61
AF090968_1(AF090968|pid:none) Selaginella apoda actin (Ac1) gene... 238 3e-61
AB086889_1(AB086889|pid:none) Halocynthia roretzi mRNA for muscl... 238 3e-61
AF021873_1(AF021873|pid:none) Canis familiaris beta-actin mRNA, ... 238 3e-61
AL139794_68(AL139794|pid:none) Leishmania major Friedlin chromos... 238 3e-61
AY986488_1(AY986488|pid:none) Rana catesbeiana smooth muscle alp... 238 3e-61
(O15998) RecName: Full=Actin, muscle; &AB008817_1(AB008817|pid:... 238 3e-61
AY398305_1(AY398305|pid:none) Danio rerio clone RK113A4D08 actin... 238 3e-61
AF267496_1(AF267496|pid:none) Salmo trutta alpha actin mRNA, com... 238 4e-61
X16280_1(X16280|pid:none) Oryza sativa RAc1 mRNA for actin. 238 4e-61
FN315420_1(FN315420|pid:none) Schistosoma japonicum isolate Anhu... 238 4e-61
AY079087_1(AY079087|pid:none) Leishmania donovani actin gene, co... 238 4e-61
AY891034_1(AY891034|pid:none) Synthetic construct Homo sapiens c... 238 4e-61
AB086243_1(AB086243|pid:none) Coryphaenoides yaquinae mRNA for s... 238 4e-61
BC061264_1(BC061264|pid:none) Xenopus tropicalis hypothetical pr... 238 4e-61
AM502222_127(AM502222|pid:none) Leishmania infantum chromosome 4. 238 4e-61
AF012348_1(AF012348|pid:none) Gallus gallus smooth muscle gamma ... 238 5e-61
EF091836_1(EF091836|pid:none) Lagenorhynchus acutus beta-actin m... 237 7e-61
S49007(S49007)actin - Pythium irregulare (fragment) 237 7e-61
DQ018720_1(DQ018720|pid:none) Pungitius pungitius beta-actin mRN... 237 7e-61
EU293227_1(EU293227|pid:none) Dolomedes tenebrosus clone D22 act... 237 9e-61
(P45520) RecName: Full=Actin; &L16961_1(L16961|pid:none) 236 1e-60
AK304637_1(AK304637|pid:none) Homo sapiens cDNA FLJ57283 complet... 236 1e-60
AY825362_1(AY825362|pid:none) Chorispora bungeana putative actin... 236 2e-60
X05739_1(X05739|pid:none) Sea urchin muscle actin gene exon 2 an... 236 2e-60
(Q6S8J3) RecName: Full=POTE ankyrin domain family member E; AltN... 236 2e-60
(Q00215) RecName: Full=Actin, cytoplasmic; &S33386(S33386;S21926) 236 2e-60
EF091837_1(EF091837|pid:none) Megaptera novaeangliae beta-actin ... 236 2e-60
AK124338_1(AK124338|pid:none) Homo sapiens cDNA FLJ42347 fis, cl... 236 2e-60
DQ238707_1(DQ238707|pid:none) Lythrurus umbratilis beta-actin ge... 236 2e-60
AF276076_1(AF276076|pid:none) Ambystoma mexicanum cardiac actin ... 236 2e-60
FJ217210_1(FJ217210|pid:none) Homarus americanus skeletal muscle... 235 3e-60
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp... 235 3e-60
AY644729_1(AY644729|pid:none) Uroleptus sp. WJC-2003 macronuclea... 235 3e-60
(P84856) RecName: Full=Actin, cytoplasmic 1; AltName: Full=Beta-... 235 3e-60
AY044838_1(AY044838|pid:none) Stylonychia pustulata macronuclear... 235 3e-60
FN318327_1(FN318327|pid:none) Schistosoma japonicum isolate Anhu... 235 3e-60
AB056698_1(AB056698|pid:none) Blepharisma japonicum mRNA for act... 235 3e-60
AL132960_5(AL132960|pid:none) Arabidopsis thaliana DNA chromosom... 235 3e-60
L21915_1(L21915|pid:none) Molgula citrina muscle actin mRNA, 3' ... 235 3e-60
AF508055_1(AF508055|pid:none) Hypotrichida sp. KEC2002 macronucl... 234 4e-60
(P30172) RecName: Full=Actin-100; Flags: Fragment; &X55746_1(X5... 234 4e-60
AY373659_1(AY373659|pid:none) Uroleptus pisces strain 2 macronuc... 234 4e-60
AF049106_1(AF049106|pid:none) Glycine max actin 4 (SAc4) gene, c... 234 6e-60
EU293228_1(EU293228|pid:none) Paraphidippus aurantius clone Ph15... 234 6e-60
FJ217209_1(FJ217209|pid:none) Homarus americanus skeletal muscle... 234 6e-60
AF508053_1(AF508053|pid:none) Uroleptus pisces macronuclear acti... 234 6e-60
AB070223_1(AB070223|pid:none) Paramecium caudatum Pc_actinPT1 mR... 234 8e-60
EU741841_1(EU741841|pid:none) Cryptosporidium baileyi strain ZJJ... 234 8e-60
AB086367_1(AB086367|pid:none) Blepharisma musculus mRNA for acti... 234 8e-60
(Q554S6) RecName: Full=Actin-17; AltName: Full=Actin-2-sub 2; &... 234 8e-60
EF428193_1(EF428193|pid:none) Cryptosporidium sp. CHB-02 actin g... 233 1e-59
AY044841_1(AY044841|pid:none) Holosticha polystylata macronuclea... 233 1e-59
T06788(T06788) actin - garden pea &U76193_1(U76193|pid:none) &U... 233 1e-59
EF428192_1(EF428192|pid:none) Cryptosporidium sp. CHB-01 actin g... 233 1e-59
AB231901_1(AB231901|pid:none) Symbiodinium sp. PL-TS-1 SyAct-A2 ... 233 1e-59
AJ537442_1(AJ537442|pid:none) Paramecium tetraurelia macronuclea... 233 1e-59
AJ880414_1(AJ880414|pid:none) Nemalionopsis shawii partial act1 ... 233 2e-59
(P12431) RecName: Full=Actin, muscle; 233 2e-59
AF237734_2(AF237734|pid:none) Trichomonas vaginalis putative ade... 232 2e-59
AF061021_1(AF061021|pid:none) Spirogyra sp. SVCK-253 actin mRNA,... 232 2e-59
(P53468) RecName: Full=Actin, cytoplasmic; AltName: Full=Actin, ... 232 2e-59
AF091811_1(AF091811|pid:none) Psilotum nudum actin 1 mRNA, compl... 232 3e-59
AK151898_1(AK151898|pid:none) Mus musculus bone marrow macrophag... 232 3e-59
ATRZ2(S10021) actin 2 - rice &X15864_1(X15864|pid:none) 232 3e-59
AJ132375_1(AJ132375|pid:none) Reticulomyxa filosa mRNA for actin... 232 3e-59
EF030518_1(EF030518|pid:none) Cryptosporidium sp. LPHN actin gen... 232 3e-59
(Q00214) RecName: Full=Actin, muscle; &S33387(S33387;S21927) 232 3e-59
DQ980429_1(DQ980429|pid:none) Peridinium limbatum clone plactin2... 231 4e-59

>(Q84M92) RecName: Full=Actin-related protein 4;
&AK228098_1(AK228098|pid:none)
&BT006474_1(BT006474|pid:none)
Length = 441

Score = 362 bits (930), Expect = 1e-98
Identities = 188/453 (41%), Positives = 269/453 (59%), Gaps = 13/453 (2%)
Frame = +3

Query: 30 MYSGDDVSAIVIDVGTFSTKGGYAGEDSPKAVFPTDIGVVYKNE--------NETVGTGD 185
MY GD+VSAIV+D+G+ + K GYAGED+PKAVFP+ IG V E +T +
Sbjct: 1 MYGGDEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVIGAVDGVEAMDVDVDSTKTNSNSE 60

Query: 186 SEMGEKDDSEPKRTYYCGTNGITYRRPHMEIINPLSDGLIKNWDAMEQIWNHTFYERLHI 365
E + + KR Y G+ ++YRR HME+++P+ DG++ +WD ++ IW H F L I
Sbjct: 61 DSKTESEKEKSKRKLYVGSQAMSYRRDHMEVLSPIKDGIVSDWDLVDNIWEHAFKSCLMI 120

Query: 366 NPIEHPILLAEPTYNTRAIREKVTEIMFEKYHAPALFIAKNXXXXXXXXXXXXXXXXDSG 545
+P EHP+LLAEP NT+ REK E+MFEKY PALF+AKN D G
Sbjct: 121 DPTEHPMLLAEPPLNTQQQREKAAELMFEKYKVPALFMAKNPVLTSFATGRATSLVVDCG 180

Query: 546 GGMTSVTPVFEGFVVKNGIVKSNLAGNRLTEEYYRILSSKNITVNPINLIKKVEIKTGEF 725
GG T+++PV +G+V++ +V S L G LT+ + L SK I + P K+ E++ GEF
Sbjct: 181 GGSTTISPVHDGYVLQKAVVSSPLGGEFLTDCLLKSLESKGIKIRPRYSFKRKEVRAGEF 240

Query: 726 GITPYNIPTLTESYKRYVTLETIRDLKETSCRVSDTK-DLGEDINIAQVPYELPDGNLLE 902
+ +IP TESYK + + D+K++ CRV DT D NI YELPDG LE
Sbjct: 241 QVEDVDIPDTTESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTTSYELPDGQTLE 300

Query: 903 IGSDRFQIPELLFNPTPLNEQILXXXXXXXXXXXXXXXXVVQQPQYQGLGRMIIESLEKS 1082
IG+DRF++P+++FNP+ + P +GL M++ES+ K
Sbjct: 301 IGADRFKVPDVMFNPSIVQ------------TIPGMEKYAEMIPSVRGLPHMVMESINKC 348

Query: 1083 DTDIRKELISNLIITGGNTLFAGFQERLVRDISEISYNKPKI----VANQTEKKNSVWIG 1250
D DIR+EL S++++ GG + +ERL +D+ E S + ++ N TE++ SVWIG
Sbjct: 349 DVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIG 408

Query: 1251 GSVLGSLGTFQQMWMSKSEWEEFGRPLVEKKCP 1349
GS+L SLG+FQQMW SKSE+EE G +++KCP
Sbjct: 409 GSILASLGSFQQMWFSKSEYEEHGASYIQRKCP 441

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,994,120,687
Number of extensions: 37446089
Number of successful extensions: 127269
Number of sequences better than 10.0: 2571
Number of HSP's gapped: 119961
Number of HSP's successfully gapped: 3535
Length of query: 476
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 344
Effective length of database: 618,001,159
Effective search space: 212592398696
Effective search space used: 212592398696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.56 gvh: 0.34 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for Contig-U08029-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 4
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 4
CH (FL, L) 0
CF (FL, S) 4
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0