Contig-U08024-1 |
Contig ID |
Contig-U08024-1 |
Contig update |
2002. 5. 9 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1390 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
1279728 |
End point |
1281119 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
4 |
Link to clone list |
U08024 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
Query= Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Contig-U08024-1Q.Seq.d (1400 letters)
Database: CSM 6905 sequences; 5,674,871 total letters
Score E Sequences producing significant alignments: (bits) Value
Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Conti... 948 0.0 Contig-U11366-1 (Contig-U11366-1Q) /CSM_Contig/Conti... 56 1e-07 Contig-U12753-1 (Contig-U12753-1Q) /CSM_Contig/Conti... 54 4e-07 Contig-U04046-1 (Contig-U04046-1Q) /CSM_Contig/Conti... 52 2e-06 Contig-U11427-1 (Contig-U11427-1Q) /CSM_Contig/Conti... 50 7e-06 Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Conti... 48 3e-05 Contig-U08208-1 (Contig-U08208-1Q) /CSM_Contig/Conti... 48 3e-05 Contig-U08918-1 (Contig-U08918-1Q) /CSM_Contig/Conti... 46 1e-04 Contig-U12744-1 (Contig-U12744-1Q) /CSM_Contig/Conti... 44 4e-04 Contig-U11340-1 (Contig-U11340-1Q) /CSM_Contig/Conti... 44 4e-04
>Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Contig-U08024-1Q.Seq.d Length = 1400
Score = 948 bits (478), Expect = 0.0 Identities = 481/481 (100%) Strand = Plus / Plus
Query: 218 actgttggcctactggnattaataattaaaatgtgtgtataaaattttactaatatgtat 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 218 actgttggcctactggnattaataattaaaatgtgtgtataaaattttactaatatgtat 277
Query: 278 atttctttaatttaataataaatttaggggatccatattcaaattcagaaacaactggtg 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 278 atttctttaatttaataataaatttaggggatccatattcaaattcagaaacaactggtg 337
Query: 338 atccatataaaacaatatttgtgtctagaattagttataaaactactcaacaaaagttag 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 atccatataaaacaatatttgtgtctagaattagttataaaactactcaacaaaagttag 397
Query: 398 aatttgaatttggtcaatttgggccaattaaaagtttatttttagtaaaagattcaaata 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 aatttgaatttggtcaatttgggccaattaaaagtttatttttagtaaaagattcaaata 457
Query: 458 atcctgaaaaacatactggttatgcttttattgaatttgaaagagaaagagatatgaaag 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 atcctgaaaaacatactggttatgcttttattgaatttgaaagagaaagagatatgaaag 517
Query: 518 ctgcttataaacaagctgatggtatgaaaataggatgatagacgtattgtagttgatatt 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 518 ctgcttataaacaagctgatggtatgaaaataggatgatagacgtattgtagttgatatt 577
Query: 578 gaaagaggaagagttataaaaaattggaaaccaagaaaatttggtggtggtcttggtaat 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 578 gaaagaggaagagttataaaaaattggaaaccaagaaaatttggtggtggtcttggtaat 637
Query: 638 acaagagcaggtggtgttgatgtgaatcaaacattctctggtcgtgaaaatgtctgaatc 697 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 638 acaagagcaggtggtgttgatgtgaatcaaacattctctggtcgtgaaaatgtctgaatc 697
Query: 698 t 698 | Sbjct: 698 t 698
Score = 260 bits (131), Expect = 4e-69 Identities = 131/131 (100%) Strand = Plus / Plus
Query: 926 gtgatagagatcatcgtggtagtggtggtgaaagagaaagagaaagagatcaaagagata 985 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 926 gtgatagagatcatcgtggtagtggtggtgaaagagaaagagaaagagatcaaagagata 985
Query: 986 ggggtggtgatagaggtggtgatagaggtgatagaagtgatagaggaagaagtgatagag 1045 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 986 ggggtggtgatagaggtggtgatagaggtgatagaagtgatagaggaagaagtgatagag 1045
Query: 1046 gtgttagaggt 1056 ||||||||||| Sbjct: 1046 gtgttagaggt 1056
Score = 204 bits (103), Expect = 2e-52 Identities = 103/103 (100%) Strand = Plus / Plus
Query: 1216 gatagaagaggtggcagcgatagagatcatcgtattgatgaaagaagaagagatcaaaga 1275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1216 gatagaagaggtggcagcgatagagatcatcgtattgatgaaagaagaagagatcaaaga 1275
Query: 1276 gattatggatcaattagtgatgcacattttgatcatttccaat 1318 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1276 gattatggatcaattagtgatgcacattttgatcatttccaat 1318
Score = 192 bits (97), Expect = 7e-49 Identities = 97/97 (100%) Strand = Plus / Plus
Query: 770 gagatggtggtttatcatcaaatggtaatagaagtaatggtattagtagtggtagtggtg 829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 770 gagatggtggtttatcatcaaatggtaatagaagtaatggtattagtagtggtagtggtg 829
Query: 830 gtagtggtggtgatagaggagatagaagtgatagaga 866 ||||||||||||||||||||||||||||||||||||| Sbjct: 830 gtagtggtggtgatagaggagatagaagtgatagaga 866
Score = 65.9 bits (33), Expect = 1e-10 Identities = 57/65 (87%) Strand = Plus / Plus
Query: 989 gtggtgatagaggtggtgatagaggtgatagaagtgatagaggaagaagtgatagaggtg 1048 |||||| ||| |||||||||||||| |||||||||||||||| ||| | |||||||||| Sbjct: 824 gtggtggtagtggtggtgatagaggagatagaagtgatagagacagaggagatagaggtg 883
Query: 1049 ttaga 1053 |||| Sbjct: 884 ataga 888
Score = 60.0 bits (30), Expect = 7e-09 Identities = 39/42 (92%) Strand = Plus / Plus
Query: 824 gtggtggtagtggtggtgatagaggagatagaagtgatagag 865 |||||| ||| |||||||||||||| |||||||||||||||| Sbjct: 989 gtggtgatagaggtggtgatagaggtgatagaagtgatagag 1030
Score = 56.0 bits (28), Expect = 1e-07 Identities = 28/28 (100%) Strand = Plus / Plus
Query: 128 ccataattttaataaaactataaatttt 155 |||||||||||||||||||||||||||| Sbjct: 128 ccataattttaataaaactataaatttt 155
Score = 54.0 bits (27), Expect = 4e-07 Identities = 39/43 (90%) Strand = Plus / Plus
Query: 1003 ggtgatagaggtgatagaagtgatagaggaagaagtgatagag 1045 |||| |||||||||||||||||||||||| ||| |||||||| Sbjct: 1045 ggtgttagaggtgatagaagtgatagaggcagagatgatagag 1087
Score = 54.0 bits (27), Expect = 4e-07 Identities = 27/27 (100%) Strand = Plus / Plus
Query: 1216 gatagaagaggtggcagcgatagagat 1242 ||||||||||||||||||||||||||| Sbjct: 1126 gatagaagaggtggcagcgatagagat 1152
Score = 48.1 bits (24), Expect = 3e-05 Identities = 27/28 (96%) Strand = Plus / Plus
Query: 1003 ggtgatagaggtgatagaagtgatagag 1030 ||||||||| |||||||||||||||||| Sbjct: 880 ggtgatagaagtgatagaagtgatagag 907
Score = 48.1 bits (24), Expect = 3e-05 Identities = 24/24 (100%) Strand = Plus / Plus
Query: 1006 gatagaggtgatagaagtgataga 1029 |||||||||||||||||||||||| Sbjct: 874 gatagaggtgatagaagtgataga 897
Score = 44.1 bits (22), Expect = 4e-04 Identities = 25/25 (100%) Strand = Plus / Plus
Query: 1376 cacatccagaacgtgtaanatagag 1400 ||||||||||||||||||||||||| Sbjct: 1376 cacatccagaacgtgtaanatagag 1400
Score = 44.1 bits (22), Expect = 4e-04 Identities = 37/42 (88%) Strand = Plus / Plus
Query: 1003 ggtgatagaggtgatagaagtgatagaggaagaagtgataga 1044 |||||||||| ||| |||||||||||||| ||| ||||||| Sbjct: 1180 ggtgatagagatgacagaagtgatagaggtagagatgataga 1221
Score = 42.1 bits (21), Expect = 0.002 Identities = 27/29 (93%) Strand = Plus / Plus
Query: 838 ggtgatagaggagatagaagtgatagaga 866 ||||||||| | ||||||||||||||||| Sbjct: 880 ggtgatagaagtgatagaagtgatagaga 908
Score = 40.1 bits (20), Expect = 0.006 Identities = 26/28 (92%) Strand = Plus / Plus
Query: 838 ggtgatagaggagatagaagtgatagag 865 |||| |||||| |||||||||||||||| Sbjct: 1045 ggtgttagaggtgatagaagtgatagag 1072
Score = 40.1 bits (20), Expect = 0.006 Identities = 23/24 (95%) Strand = Plus / Plus
Query: 841 gatagaggagatagaagtgataga 864 |||||||| ||||||||||||||| Sbjct: 874 gatagaggtgatagaagtgataga 897
Score = 36.2 bits (18), Expect = 0.099 Identities = 27/30 (90%) Strand = Plus / Plus
Query: 1027 agaggaagaagtgatagaggtgttagaggt 1056 ||||||||| ||||||||||| ||||||| Sbjct: 1090 agaggaagagatgatagaggtgatagaggt 1119
Score = 36.2 bits (18), Expect = 0.099 Identities = 24/26 (92%) Strand = Plus / Plus
Query: 1004 gtgatagaggtgatagaagtgataga 1029 |||||||||||| |||| |||||||| Sbjct: 1037 gtgatagaggtgttagaggtgataga 1062
Score = 34.2 bits (17), Expect = 0.39 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 941 gtggtagtggtggtgaaagag 961 |||||||||||||||| |||| Sbjct: 827 gtggtagtggtggtgatagag 847
Score = 34.2 bits (17), Expect = 0.39 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 844 agaggagatagaagtgataga 864 |||||||||||| |||||||| Sbjct: 868 agaggagatagaggtgataga 888
Score = 34.2 bits (17), Expect = 0.39 Identities = 20/21 (95%) Strand = Plus / Plus
Query: 827 gtggtagtggtggtgatagag 847 |||||||||||||||| |||| Sbjct: 941 gtggtagtggtggtgaaagag 961
Score = 34.2 bits (17), Expect = 0.39 Identities = 17/17 (100%) Strand = Plus / Plus
Query: 1 acgatatcaaattcaaa 17 ||||||||||||||||| Sbjct: 1 acgatatcaaattcaaa 17
Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1005 tgatagaggtgataga 1020 |||||||||||||||| Sbjct: 1173 tgatagaggtgataga 1188
Score = 32.2 bits (16), Expect = 1.5 Identities = 25/28 (89%) Strand = Plus / Plus
Query: 838 ggtgatagaggagatagaagtgatagag 865 |||||||||| || ||||||||||||| Sbjct: 1180 ggtgatagagatgacagaagtgatagag 1207
Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1005 tgatagaggtgataga 1020 |||||||||||||||| Sbjct: 1101 tgatagaggtgataga 1116
Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 969 aagagatcaaagagat 984 |||||||||||||||| Sbjct: 1263 aagagatcaaagagat 1278
Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 1263 aagagatcaaagagat 1278 |||||||||||||||| Sbjct: 969 aagagatcaaagagat 984
Score = 30.2 bits (15), Expect = 6.1 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 961 gaaagagaaagagat 975 ||||||||||||||| Sbjct: 496 gaaagagaaagagat 510
Score = 30.2 bits (15), Expect = 6.1 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 928 gatagagatcatcgt 942 ||||||||||||||| Sbjct: 1234 gatagagatcatcgt 1248
Score = 30.2 bits (15), Expect = 6.1 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 954 tgaaagagaaagaga 968 ||||||||||||||| Sbjct: 495 tgaaagagaaagaga 509
Score = 30.2 bits (15), Expect = 6.1 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 496 gaaagagaaagagat 510 ||||||||||||||| Sbjct: 961 gaaagagaaagagat 975
Score = 30.2 bits (15), Expect = 6.1 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 495 tgaaagagaaagaga 509 ||||||||||||||| Sbjct: 954 tgaaagagaaagaga 968
Score = 30.2 bits (15), Expect = 6.1 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 1033 agaagtgatagaggt 1047 ||||||||||||||| Sbjct: 1195 agaagtgatagaggt 1209
Score = 30.2 bits (15), Expect = 6.1 Identities = 15/15 (100%) Strand = Plus / Plus
Query: 1234 gatagagatcatcgt 1248 ||||||||||||||| Sbjct: 928 gatagagatcatcgt 942
>Contig-U11366-1 (Contig-U11366-1Q) /CSM_Contig/Contig-U11366-1Q.Seq.d Length = 1878
Score = 56.0 bits (28), Expect = 1e-07 Identities = 28/28 (100%) Strand = Plus / Plus
Query: 817 agtggtagtggtggtagtggtggtgata 844 |||||||||||||||||||||||||||| Sbjct: 1599 agtggtagtggtggtagtggtggtgata 1626
Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%) Strand = Plus / Plus
Query: 941 gtggtagtggtggtga 956 |||||||||||||||| Sbjct: 1609 gtggtagtggtggtga 1624
Score = 30.2 bits (15), Expect = 6.1 Identities = 18/19 (94%) Strand = Plus / Plus
Query: 813 tagtagtggtagtggtggt 831 |||| |||||||||||||| Sbjct: 1604 tagtggtggtagtggtggt 1622
>Contig-U12753-1 (Contig-U12753-1Q) /CSM_Contig/Contig-U12753-1Q.Seq.d Length = 1169
Score = 54.0 bits (27), Expect = 4e-07 Identities = 30/31 (96%) Strand = Plus / Plus
Query: 815 gtagtggtagtggtggtagtggtggtgatag 845 |||||||||||||||||||||||||| |||| Sbjct: 42 gtagtggtagtggtggtagtggtggtaatag 72
Score = 32.2 bits (16), Expect = 1.5 Identities = 19/20 (95%) Strand = Plus / Plus
Query: 813 tagtagtggtagtggtggta 832 |||| ||||||||||||||| Sbjct: 49 tagtggtggtagtggtggta 68
Database: CSM Posted date: Jun 9, 2004 7:35 PM Number of letters in database: 5,674,871 Number of sequences in database: 6905 Lambda K H 1.37 0.711 1.31
Gapped Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,272 Number of Sequences: 6905 Number of extensions: 18272 Number of successful extensions: 3338 Number of sequences better than 10.0: 782 length of query: 1400 length of database: 5,674,871 effective HSP length: 16 effective length of query: 1384 effective length of database: 5,564,391 effective search space: 7701117144 effective search space used: 7701117144 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 15 (30.2 bits)
|
dna update |
2008.11.12 |
Homology vs DNA |
|
protein update |
2009. 6.24 |
Homology vs Protein |
Query= Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Contig-U08024-1Q.Seq.d (1400 letters)
Database: nrp_A 3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
(Q55FQ0) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 168 3e-54 AB236848_1(AB236848|pid:none) Trifolium pratense RNA for putativ... 92 1e-25 AC148484_5(AC148484|pid:none) Medicago truncatula clone mth2-46g... 92 2e-25 AY648811_1(AY648811|pid:none) Danio rerio U1 small ribonucleopro... 90 2e-24 (P09406) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 90 3e-24 BC108447_1(BC108447|pid:none) Xenopus laevis U1 70K, mRNA (cDNA ... 90 3e-24 BC097714_1(BC097714|pid:none) Xenopus laevis U1 70K, mRNA (cDNA ... 90 3e-24 BC077089_1(BC077089|pid:none) Danio rerio small nuclear ribonucl... 89 4e-24 (Q66II8) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 87 1e-23 BC167051_1(BC167051|pid:none) Rattus norvegicus U1 small nuclear... 87 1e-23 (Q62376) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 87 1e-23 (Q9UE45) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 87 1e-23 M57939_2(M57939|pid:none) Human small nuclear ribonucleoprotein ... 87 1e-23 S04336(S04336) U1 snRNP 70K protein (long form) - mouse (fragmen... 87 1e-23 AK011564_1(AK011564|pid:none) Mus musculus 10 days embryo whole ... 87 1e-23 A36311(A36311) 70K U1 small nuclear ribonucleoprotein - fruit fl... 88 2e-23 (P17133) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 88 2e-23 AK293120_1(AK293120|pid:none) Homo sapiens cDNA FLJ77404 complet... 86 3e-23 AK248084_1(AK248084|pid:none) Dugesia japonica mRNA for snRNP70K... 89 2e-22 DQ377062_1(DQ377062|pid:none) Oryza sativa (japonica cultivar-gr... 91 3e-22 AP008216_44(AP008216|pid:none) Oryza sativa (japonica cultivar-g... 91 3e-22 AP007166_420(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 97 8e-22 AM270324_33(AM270324|pid:none) Aspergillus niger contig An14c017... 95 5e-21 S28147(S28147)U1 snRNP 70K protein - Arabidopsis thaliana (fragm... 89 2e-17 AE017341_133(AE017341|pid:none) Cryptococcus neoformans var. neo... 84 1e-16 CP000585_274(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 73 7e-16 (O13829) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 80 2e-15 U21320_5(U21320|pid:none) Caenorhabditis elegans cosmid K04G7, c... 77 9e-15 CP001160_235(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 70 1e-14 FN357313_28(FN357313|pid:none) Schistosoma mansoni genome sequen... 75 3e-14 AY815316_1(AY815316|pid:none) Schistosoma japonicum SJCHGC02307 ... 74 1e-13 AM910993_34(AM910993|pid:none) Plasmodium knowlesi strain H chro... 74 2e-13 AK099033_1(AK099033|pid:none) Oryza sativa Japonica Group cDNA c... 69 4e-12 BX538350_45(BX538350|pid:none) Cryptosporidium parvum chromosome... 62 3e-11 (Q1LZH0) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 64 3e-11 S04824(S04824)U1 snRNP 70K protein (short form) - mouse (fragment) 72 4e-11 S00674(S00674;A37108) U1 snRNP 70K protein (clone RNP FL 1.7) - ... 72 4e-11 BT066750_1(BT066750|pid:none) Zea mays full-length cDNA clone ZM... 64 5e-11 EU953346_1(EU953346|pid:none) Zea mays clone 1400990 unknown mRNA. 64 5e-11 (Q9D384) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 64 5e-11 AK039064_1(AK039064|pid:none) Mus musculus adult male hypothalam... 64 5e-11 (Q5U1W5) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 64 9e-11 CR382131_452(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 69 1e-10 (Q05AT9) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 61 1e-10 AC002335_10(AC002335|pid:none) Arabidopsis thaliana chromosome 2... 62 4e-10 (Q16560) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 60 4e-10 DQ215256_1(DQ215256|pid:none) Taeniopygia guttata clone 0058P005... 58 6e-09 BC167878_1(BC167878|pid:none) Xenopus tropicalis cDNA clone MGC:... 57 7e-09 CU633900_643(CU633900|pid:none) Podospora anserina genomic DNA c... 64 1e-08 CP000499_499(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 54 3e-08 (Q4KMD3) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 56 4e-08 BC095150_1(BC095150|pid:none) Danio rerio small nuclear ribonucl... 56 3e-06 AY627767_1(AY627767|pid:none) Zea mays U1 snRNP mRNA, complete c... 56 4e-06 (Q00916) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 51 5e-06 U52909_2(U52909|pid:none) Arabidopsis thaliana U1 snRNP 70K prot... 54 1e-05 DQ377063_1(DQ377063|pid:none) Oryza sativa (japonica cultivar-gr... 54 1e-05 CR380959_546(CR380959|pid:none) Candida glabrata strain CBS138 c... 50 1e-05 BC167357_1(BC167357|pid:none) Xenopus tropicalis peptidylprolyl ... 52 4e-05 AK014406_1(AK014406|pid:none) Mus musculus 12 days embryo embryo... 52 5e-05 AK017370_1(AK017370|pid:none) Mus musculus 6 days neonate head c... 52 5e-05 AK092069_1(AK092069|pid:none) Homo sapiens cDNA FLJ34750 fis, cl... 52 5e-05 AK012371_1(AK012371|pid:none) Mus musculus 11 days embryo whole ... 52 5e-05 BC064134_1(BC064134|pid:none) Homo sapiens peptidylprolyl isomer... 52 5e-05 (Q8WUA2) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 52 5e-05 AK167258_1(AK167258|pid:none) Mus musculus blastocyst blastocyst... 52 5e-05 (Q60990) RecName: Full=RNA-binding motif protein, Y chromosome, ... 51 1e-04 (O35698) RecName: Full=RNA-binding motif protein, Y chromosome, ... 50 1e-04 AE016817_337(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 47 2e-04 (Q8N7X1) RecName: Full=Putative uncharacterized protein CXorf55; 50 2e-04 BC150670_1(BC150670|pid:none) Mus musculus RNA binding motif pro... 50 2e-04 AP008247_3(AP008247|pid:none) Oryza sativa Japonica Group genomi... 49 3e-04 BX248523_3(BX248523|pid:none) Zebrafish DNA sequence from clone ... 49 3e-04 BC056814_1(BC056814|pid:none) Danio rerio peptidylprolyl isomera... 49 3e-04 T45117(T45117) hU1-70K protein (286 AA) [imported] - human (frag... 47 4e-04 AF279289_1(AF279289|pid:none) Homo sapiens testes-specific heter... 49 6e-04 AF069682_1(AF069682|pid:none) Homo sapiens testes specific heter... 48 7e-04 AK292271_1(AK292271|pid:none) Homo sapiens cDNA FLJ76931 complet... 48 7e-04 (Q4WAQ9) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 48 0.001 (Q29RT0) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 48 0.001 FN357312_50(FN357312|pid:none) Schistosoma mansoni genome sequen... 48 0.001 BC057796_1(BC057796|pid:none) Homo sapiens RNA binding motif pro... 47 0.001 AM270259_24(AM270259|pid:none) Aspergillus niger contig An12c002... 47 0.002 (P0C7P1) RecName: Full=RNA-binding motif protein, Y chromosome, ... 47 0.002 BC070298_1(BC070298|pid:none) Homo sapiens RNA binding motif pro... 47 0.002 (Q15415) RecName: Full=RNA-binding motif protein, Y chromosome, ... 47 0.002 AC136449_14(AC136449|pid:none) Medicago truncatula clone mth2-11... 47 0.002 (A6NDE4) RecName: Full=RNA-binding motif protein, Y chromosome, ... 47 0.002 A44275_1(A44275|pid:none) Sequence 3 from Patent WO9511300. &B4... 47 0.002 (A6NEQ0) RecName: Full=RNA-binding motif protein, Y chromosome, ... 47 0.002 AC148528_1(AC148528|pid:none) Medicago truncatula clone mth2-53h... 47 0.002 BC144577_1(BC144577|pid:none) Homo sapiens RNA binding motif pro... 47 0.002 BC144422_1(BC144422|pid:none) Homo sapiens cDNA clone MGC:177960... 47 0.002 AY995201_1(AY995201|pid:none) Pan troglodytes RBMY1 mRNA, partia... 47 0.002 (Q6PFR5) RecName: Full=Transformer-2 protein homolog alpha; AltN... 47 0.002 AC159455_35(AC159455|pid:none) Trypanosoma brucei chromosome 5 c... 47 0.002 BC161978_1(BC161978|pid:none) Rattus norvegicus transformer-2 al... 47 0.002 AB085214_1(AB085214|pid:none) Hyla japonica cirp-beta mRNA for c... 47 0.002 DQ972958_1(DQ972958|pid:none) Sus scrofa TRA2A mRNA, complete cds. 47 0.002 AB173584_1(AB173584|pid:none) Macaca fascicularis brain cDNA clo... 47 0.002 AM910996_258(AM910996|pid:none) Plasmodium knowlesi strain H chr... 47 0.002 AB159268_1(AB159268|pid:none) Oryzias latipes Tra2a2 mRNA for tr... 47 0.002 EU797611_1(EU797611|pid:none) Ovis aries TRA2A mRNA, complete cds. 47 0.002 CP000838_71(CP000838|pid:none) Acaryochloris marina MBIC11017 pl... 46 0.003 BT062575_1(BT062575|pid:none) Zea mays full-length cDNA clone ZM... 46 0.003 AM445871_1(AM445871|pid:none) Vitis vinifera contig VV78X219207.... 46 0.003 CR380958_544(CR380958|pid:none) Candida glabrata strain CBS138 c... 46 0.004 AC137701_16(AC137701|pid:none) Medicago truncatula clone mth2-35... 46 0.004 AC006954_11(AC006954|pid:none) Arabidopsis thaliana chromosome 2... 46 0.004 CP000563_4104(CP000563|pid:none) Shewanella baltica OS155, compl... 46 0.004 BC074599_1(BC074599|pid:none) Xenopus tropicalis transformer-2 a... 46 0.004 BC073641_1(BC073641|pid:none) Xenopus laevis MGC82977 protein, m... 46 0.004 AB304402_1(AB304402|pid:none) Sus scrofa CBF-A mRNA for CArG-bin... 46 0.004 CP000581_580(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 45 0.005 BX649404_2(BX649404|pid:none) Zebrafish DNA sequence from clone ... 45 0.005 CR382124_489(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 45 0.005 AK005907_1(AK005907|pid:none) Mus musculus adult male testis cDN... 45 0.005 EU492544_1(EU492544|pid:none) Penaeus monodon transformer-2 prot... 45 0.005 BT004860_1(BT004860|pid:none) Drosophila melanogaster RE27227 fu... 45 0.005 (Q54WM4) RecName: Full=Eukaryotic translation initiation factor ... 45 0.005 EU492545_1(EU492545|pid:none) Penaeus monodon variant transforme... 45 0.005 (Q5ARI5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 45 0.005 AE014297_2648(AE014297|pid:none) Drosophila melanogaster chromos... 45 0.005 BX649404_1(BX649404|pid:none) Zebrafish DNA sequence from clone ... 45 0.005 AF153444_1(AF153444|pid:none) Felis catus hnRNP A/B related prot... 45 0.005 AB079122_1(AB079122|pid:none) Oryzias latipes Tra2b mRNA for tra... 45 0.006 CR954212_227(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 45 0.006 AB159275_1(AB159275|pid:none) Oryzias latipes Tra2b6 mRNA for tr... 45 0.006 BA000039_2254(BA000039|pid:none) Thermosynechococcus elongatus B... 45 0.006 CU633447_37(CU633447|pid:none) Podospora anserina genomic DNA ch... 45 0.006 CP001032_940(CP001032|pid:none) Opitutus terrae PB90-1, complete... 45 0.006 AB159271_1(AB159271|pid:none) Oryzias latipes Tra2b2 mRNA for tr... 45 0.006 X76245_1(X76245|pid:none) S.cerevisiae NOP77 gene for essential ... 45 0.006 AE014297_3780(AE014297|pid:none) Drosophila melanogaster chromos... 45 0.006 DQ497201_1(DQ497201|pid:none) Bombyx mori cleavage stimulation f... 45 0.006 AB159273_1(AB159273|pid:none) Oryzias latipes Tra2b4 mRNA for tr... 45 0.006 X06814_1(X06814|pid:none) Human mRNA for hU1-70K small nuclear R... 45 0.006 (P37838) RecName: Full=Nucleolar protein 4; AltName: Full=Nucleo... 45 0.006 FJ527019_1(FJ527019|pid:none) Macaca mulatta truncated RNA bindi... 45 0.008 S56750(S56750)single stranded D box binding factor 2 - chicken 45 0.008 CP000592_235(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 45 0.008 S56751(S56751) single stranded D box binding factor 1 - chicken ... 45 0.008 CP000503_3631(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 45 0.008 EU087580_1(EU087580|pid:none) Ilyanassa obsoleta RNA-binding 1-l... 45 0.008 BC086795_1(BC086795|pid:none) Mus musculus splicing factor, argi... 44 0.011 (P62995) RecName: Full=Transformer-2 protein homolog beta; AltNa... 44 0.011 (Q8T6B9) RecName: Full=Poly(U)-binding-splicing factor half pint... 44 0.011 AK297686_1(AK297686|pid:none) Homo sapiens cDNA FLJ60713 complet... 44 0.011 FN357314_32(FN357314|pid:none) Schistosoma mansoni genome sequen... 44 0.011 AK223425_1(AK223425|pid:none) Homo sapiens mRNA for heterogeneou... 44 0.011 AK097657_1(AK097657|pid:none) Homo sapiens cDNA FLJ40338 fis, cl... 44 0.011 AF479079_1(AF479079|pid:none) Drosophila melanogaster half pint ... 44 0.011 AC108906_21(AC108906|pid:none) Oryza sativa chromosome 3 BAC OSJ... 44 0.011 AE014296_277(AE014296|pid:none) Drosophila melanogaster chromoso... 44 0.011 AJ719598_1(AJ719598|pid:none) Gallus gallus mRNA for hypothetica... 44 0.011 AF057159_3(AF057159|pid:none) Homo sapiens transformer-2-beta (S... 44 0.011 AC093018_3(AC093018|pid:none) Oryza sativa chromosome 3 BAC OSJN... 44 0.011 AB063020_1(AB063020|pid:none) Macaca fascicularis brain cDNA clo... 44 0.011 AE016820_121(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 44 0.011 AK067130_1(AK067130|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.011 CR940352_492(CR940352|pid:none) Theileria annulata strain Ankara... 44 0.011 AB299206_1(AB299206|pid:none) Rana rugosa Tra2 mRNA for transfor... 44 0.011 AB171721_1(AB171721|pid:none) Macaca fascicularis brain cDNA clo... 44 0.011 AB463727_1(AB463727|pid:none) Synthetic construct DNA, clone: pF... 44 0.011 (Q4IE79) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 44 0.014 AF216753_1(AF216753|pid:none) Rattus norvegicus CArG-binding fac... 44 0.014 CU928169_478(CU928169|pid:none) Kluyveromyces thermotolerans str... 44 0.014 AF108653_1(AF108653|pid:none) Rattus norvegicus nucleic acid bin... 44 0.014 CP001344_909(CP001344|pid:none) Cyanothece sp. PCC 7425, complet... 44 0.014 CP000447_127(CP000447|pid:none) Shewanella frigidimarina NCIMB 4... 44 0.014 CR858515_1(CR858515|pid:none) Pongo abelii mRNA; cDNA DKFZp468L1... 44 0.014 DQ120650_1(DQ120650|pid:none) Homo sapiens RBM1 gene, partial cds. 44 0.014 AB462999_1(AB462999|pid:none) Synthetic construct DNA, clone: pF... 44 0.014 AK076132_1(AK076132|pid:none) Mus musculus 10, 11 days embryo wh... 44 0.014 CP000500_253(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 44 0.014 AL645602_4(AL645602|pid:none) Mouse DNA sequence from clone RP23... 44 0.014 AL645602_3(AL645602|pid:none) Mouse DNA sequence from clone RP23... 44 0.014 AJ238854_1(AJ238854|pid:none) Rattus norvegicus mRNA for type A/... 44 0.014 (Q99020) RecName: Full=Heterogeneous nuclear ribonucleoprotein A... 44 0.014 DQ158856_1(DQ158856|pid:none) Bigelowiella natans nucleomorph ch... 44 0.014 AL591125_5(AL591125|pid:none) Mouse DNA sequence from clone RP23... 44 0.014 (Q2U256) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 44 0.014 DQ120651_1(DQ120651|pid:none) Pan troglodytes RBM1 gene, partial... 44 0.014 DQ120655_1(DQ120655|pid:none) Cercopithecus sabaeus RBM1 gene, p... 44 0.014 BC066454_1(BC066454|pid:none) Danio rerio heterogeneous nuclear ... 44 0.018 AJ717407_1(AJ717407|pid:none) Callithrix jacchus partial mRNA fo... 44 0.018 AE017354_250(AE017354|pid:none) Legionella pneumophila subsp. pn... 44 0.018 AF034741_1(AF034741|pid:none) Macropus eugenii heterogeneous nuc... 44 0.018 BC065953_1(BC065953|pid:none) Danio rerio RNA binding protein S1... 44 0.018 BC057251_1(BC057251|pid:none) Danio rerio RNA binding protein S1... 44 0.018 CR628336_321(CR628336|pid:none) Legionella pneumophila str. Pari... 44 0.018 AC159448_29(AC159448|pid:none) Trypanosoma brucei chromosome 8 c... 44 0.018 CP000675_323(CP000675|pid:none) Legionella pneumophila str. Corb... 44 0.018 BC077018_1(BC077018|pid:none) Xenopus tropicalis splicing factor... 44 0.018 (Q9ZQA8) RecName: Full=Probable polyadenylate-binding protein At... 44 0.018 AM920436_1196(AM920436|pid:none) Penicillium chrysogenum Wiscons... 44 0.018 X85111_1(X85111|pid:none) X.laevis mRNA for XEL-1. 44 0.018 CP000806_3097(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 44 0.018 AY360385_9(AY360385|pid:none) Oryza sativa (japonica cultivar-gr... 44 0.018 AJ746579_1(AJ746579|pid:none) Microcebus murinus partial mRNA fo... 44 0.018 AJ717408_1(AJ717408|pid:none) Saimiri sciureus partial mRNA for ... 44 0.018 BX842646_292(BX842646|pid:none) Bdellovibrio bacteriovorus compl... 42 0.021 CP000851_166(CP000851|pid:none) Shewanella pealeana ATCC 700345,... 43 0.024 BC049051_1(BC049051|pid:none) Danio rerio splicing factor, argin... 43 0.024 AB168869_1(AB168869|pid:none) Macaca fascicularis testis cDNA, c... 43 0.024 AJ237847_1(AJ237847|pid:none) Mus musculus mRNA for heterogeneou... 43 0.024 BX323559_6(BX323559|pid:none) Zebrafish DNA sequence from clone ... 43 0.024 FJ623266_1(FJ623266|pid:none) Bos taurus boule mRNA, complete cds. 43 0.024 AF240679_1(AF240679|pid:none) Cucumis sativus poly(A)-binding pr... 43 0.024 S41766(S41766;S43202)heterogeneous nuclear ribonucleoprotein G -... 43 0.024 AJ237846_1(AJ237846|pid:none) Mus musculus mRNA for heterogeneou... 43 0.024 (A5A6M3) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 43 0.024 AM295005_1(AM295005|pid:none) Homo sapiens mRNA for boll protein. 43 0.024 AJ717405_1(AJ717405|pid:none) Pan paniscus partial mRNA for BOUL... 43 0.024 AB171138_1(AB171138|pid:none) Macaca fascicularis brain cDNA clo... 43 0.024 Z23064_1(Z23064|pid:none) H.sapiens mRNA gene for hnRNP G protein. 43 0.024 BC066681_1(BC066681|pid:none) Danio rerio zgc:77052, mRNA (cDNA ... 43 0.024 AK093453_1(AK093453|pid:none) Homo sapiens cDNA FLJ36134 fis, cl... 43 0.024 AY197342_1(AY197342|pid:none) Paralichthys olivaceus splicing fa... 43 0.024 (Q6IQE0) RecName: Full=Poly(U)-binding-splicing factor PUF60-B; ... 43 0.024 AB074454_1(AB074454|pid:none) Macaca fascicularis testis cDNA cl... 43 0.024 BX323559_5(BX323559|pid:none) Zebrafish DNA sequence from clone ... 43 0.024 BT065117_1(BT065117|pid:none) Zea mays full-length cDNA clone ZM... 43 0.024 (Q8N9W6) RecName: Full=Protein boule-like; &AC011997_1(AC011997... 43 0.024 EU965056_1(EU965056|pid:none) Zea mays clone 283482 splicing fac... 43 0.031 EU959768_1(EU959768|pid:none) Zea mays clone 219906 splicing fac... 43 0.031 BT044636_1(BT044636|pid:none) Salmo salar clone ssal-rgf-001-209... 43 0.031 (P04147) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 43 0.031 BT077745_1(BT077745|pid:none) Lepeophtheirus salmonis clone lsal... 43 0.031 CP000444_175(CP000444|pid:none) Shewanella sp. MR-7, complete ge... 43 0.031 AK304868_1(AK304868|pid:none) Homo sapiens cDNA FLJ59107 complet... 43 0.031 AL732567_9(AL732567|pid:none) Zebrafish DNA sequence from clone ... 43 0.031 AY398433_1(AY398433|pid:none) Danio rerio clone RK138A3D02 splic... 43 0.031 DQ100253_1(DQ100253|pid:none) Bactrocera oleae transformer-2 mal... 43 0.031 AL844508_208(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 43 0.031 CU062631_4(CU062631|pid:none) Zebrafish DNA sequence from clone ... 43 0.031 DQ126684_1(DQ126684|pid:none) Gallus gallus aggrecan promoter bi... 42 0.041 AM460508_2(AM460508|pid:none) Vitis vinifera contig VV78X182947.... 42 0.041 BT045504_1(BT045504|pid:none) Salmo salar clone ssal-rgf-523-155... 42 0.041 AF190655_1(AF190655|pid:none) Nicotiana tabacum poly(A)-binding ... 42 0.041 CR857074_1(CR857074|pid:none) Pongo abelii mRNA; cDNA DKFZp468L0... 42 0.041 AJ388517_1(AJ388517|pid:none) Canis familiaris mRNA for partial ... 42 0.041 BC071467_1(BC071467|pid:none) Danio rerio poly-U binding splicin... 42 0.041 (Q9UHX1) RecName: Full=Poly(U)-binding-splicing factor PUF60; Al... 42 0.041 AK152411_1(AK152411|pid:none) Mus musculus bone marrow macrophag... 42 0.041 BC011265_1(BC011265|pid:none) Homo sapiens poly-U binding splici... 42 0.041 Z81080_2(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 42 0.041 BC009734_1(BC009734|pid:none) Homo sapiens poly-U binding splici... 42 0.041 DQ215543_1(DQ215543|pid:none) Taeniopygia guttata clone 0058P006... 42 0.041 (Q14011) RecName: Full=Cold-inducible RNA-binding protein; AltNa... 42 0.041 AJ719636_1(AJ719636|pid:none) Gallus gallus mRNA for hypothetica... 42 0.041 AF165892_1(AF165892|pid:none) Rattus norvegicus RNA-binding prot... 42 0.041 AB171494_1(AB171494|pid:none) Macaca fascicularis brain cDNA clo... 42 0.041 BC102773_1(BC102773|pid:none) Bos taurus cold inducible RNA bind... 42 0.041 BC158521_1(BC158521|pid:none) Xenopus tropicalis hypothetical pr... 42 0.041 AB306286_1(AB306286|pid:none) Alligator mississippiensis CIRBP m... 42 0.041 AY394938_1(AY394938|pid:none) Danio rerio clone RK045A2G06 RNA b... 42 0.041 AY119171_1(AY119171|pid:none) Drosophila melanogaster RH49436 fu... 42 0.041 AK009895_1(AK009895|pid:none) Mus musculus adult male tongue cDN... 42 0.041 BT048159_1(BT048159|pid:none) Salmo salar clone ssal-plnb-025-05... 42 0.041 AL772146_2(AL772146|pid:none) Zebrafish DNA sequence from clone ... 42 0.041 BC119437_1(BC119437|pid:none) Mus musculus poly-U binding splici... 42 0.041 AM468150_4(AM468150|pid:none) Vitis vinifera contig VV78X086105.... 42 0.041 DQ215533_1(DQ215533|pid:none) Taeniopygia guttata clone 0058P002... 42 0.041 AF217197_1(AF217197|pid:none) Homo sapiens FBP-interacting repre... 42 0.041 AB170797_1(AB170797|pid:none) Macaca fascicularis brain cDNA clo... 42 0.041 (Q5R469) RecName: Full=Poly(U)-binding-splicing factor PUF60; Al... 42 0.041 AE014297_3962(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.041 AK151526_1(AK151526|pid:none) Mus musculus bone marrow macrophag... 42 0.041 CP000931_4116(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 42 0.041 AK304470_1(AK304470|pid:none) Homo sapiens cDNA FLJ52850 complet... 42 0.041 DQ215539_1(DQ215539|pid:none) Taeniopygia guttata clone 0063P002... 42 0.041 AE014297_3966(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.041 (Q2HJG2) RecName: Full=Poly(U)-binding-splicing factor PUF60; Al... 42 0.041 U51586_1(U51586|pid:none) Human siah binding protein 1 (SiahBP1)... 42 0.041 AX884883_1(AX884883|pid:none) Sequence 746 from Patent EP1033401. 42 0.041 FJ629582_1(FJ629582|pid:none) Synthetic construct Drosophila mel... 42 0.041 BC084798_1(BC084798|pid:none) Xenopus laevis hypothetical LOC495... 42 0.041 T22008(T22008;T26011)hypothetical protein F39H2.2 - Caenorhabdit... 42 0.041 Z81080_1(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 42 0.041 AB441821_1(AB441821|pid:none) Tokudaia osimensis RBMX gene for R... 42 0.041 U28944_7(U28944|pid:none) Caenorhabditis elegans cosmid C18A3, c... 42 0.053 EF148426_1(EF148426|pid:none) Populus trichocarpa x Populus delt... 42 0.053 (P84586) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 42 0.053 AJ717349_1(AJ717349|pid:none) Danio rerio mRNA for RNA binding m... 42 0.053 (P60824) RecName: Full=Cold-inducible RNA-binding protein; AltNa... 42 0.053 (P08199) RecName: Full=Nucleolin; AltName: Full=Protein C23; 42 0.053 T15542(T15542)hypothetical protein C18A3.5 - Caenorhabditis eleg... 42 0.053 BC056275_1(BC056275|pid:none) Danio rerio zgc:65772, mRNA (cDNA ... 42 0.053 A27441(A27441;A24808;A24070)nucleolin - Chinese hamster 42 0.053 U28944_4(U28944|pid:none) Caenorhabditis elegans cosmid C18A3, c... 42 0.053 CR857338_1(CR857338|pid:none) Pongo abelii mRNA; cDNA DKFZp469E1... 42 0.069 BC046661_1(BC046661|pid:none) Xenopus laevis splicing factor, ar... 42 0.069 EU437408_1(EU437408|pid:none) Ceratitis capitata transformer 2 (... 42 0.069 AK128423_1(AK128423|pid:none) Homo sapiens cDNA FLJ46566 fis, cl... 42 0.069 AB362390_1(AB362390|pid:none) Dugesia japonica DjmlgA mRNA for m... 42 0.069 AX886322_1(AX886322|pid:none) Sequence 2185 from Patent EP1033401. 42 0.069 BT080250_1(BT080250|pid:none) Caligus clemensi clone ccle-evs-50... 42 0.069 BT076436_1(BT076436|pid:none) Caligus rogercresseyi clone crog-e... 42 0.069 (P42731) RecName: Full=Polyadenylate-binding protein 2; ... 42 0.069 BT055613_1(BT055613|pid:none) Zea mays full-length cDNA clone ZM... 42 0.069 CP000472_202(CP000472|pid:none) Shewanella piezotolerans WP3, co... 42 0.069 AE017342_382(AE017342|pid:none) Cryptococcus neoformans var. neo... 42 0.069 BT075762_1(BT075762|pid:none) Caligus rogercresseyi clone crog-e... 42 0.069 AB170452_1(AB170452|pid:none) Macaca fascicularis brain cDNA clo... 42 0.069 EU972135_1(EU972135|pid:none) Zea mays clone 375808 splicing fac... 42 0.069 EU968475_1(EU968475|pid:none) Zea mays clone 321216 unknown mRNA. 41 0.091 AM463653_3(AM463653|pid:none) Vitis vinifera contig VV78X030354.... 41 0.091 AY633610_1(AY633610|pid:none) Homo sapiens aging-associated gene... 41 0.091 (O02008) RecName: Full=Transformer-2 sex-determining protein; &... 41 0.091 BT070075_1(BT070075|pid:none) Zea mays full-length cDNA clone ZM... 41 0.091 (O35479) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 41 0.091 (Q9Y4C8) RecName: Full=Probable RNA-binding protein 19; AltName:... 41 0.091 AK291239_1(AK291239|pid:none) Homo sapiens cDNA FLJ76290 complet... 41 0.091 (O74400) RecName: Full=Uncharacterized RNA-binding protein C4F6.... 41 0.091 U72682_3(U72682|pid:none) Drosophila virilis alternatively splic... 41 0.091 BC127338_1(BC127338|pid:none) Xenopus tropicalis ELAV (embryonic... 41 0.091 (Q01085) RecName: Full=Nucleolysin TIAR; AltName: Full=TIA-1-rel... 41 0.091 BT065814_1(BT065814|pid:none) Zea mays full-length cDNA clone ZM... 41 0.091 DQ215534_1(DQ215534|pid:none) Taeniopygia guttata clone 0063P001... 41 0.091 U79565_1(U79565|pid:none) Macropus eugenii RBM1 mRNA, complete c... 41 0.091 AM447494_2(AM447494|pid:none) Vitis vinifera contig VV78X024983.... 41 0.091 (P0C196) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 41 0.091 AK291444_1(AK291444|pid:none) Homo sapiens cDNA FLJ77989 complet... 41 0.091 AP003800_19(AP003800|pid:none) Oryza sativa Japonica Group genom... 41 0.091 AB014582_1(AB014582|pid:none) Homo sapiens mRNA for KIAA0682 pro... 41 0.091 AK102518_1(AK102518|pid:none) Oryza sativa Japonica Group cDNA c... 41 0.12 BC084231_1(BC084231|pid:none) Xenopus laevis hypothetical LOC495... 41 0.12 AC140027_23(AC140027|pid:none) Medicago truncatula clone mth2-5m... 41 0.12 BC085751_1(BC085751|pid:none) Rattus norvegicus nucleolin, mRNA ... 41 0.12 CP001344_1126(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 41 0.12 FJ817497_1(FJ817497|pid:none) Rattus norvegicus strain W nucleol... 41 0.12 BC087677_1(BC087677|pid:none) Rattus norvegicus RNA binding moti... 41 0.12 JH0148(JH0148;A24088;I63130)nucleolin - rat 41 0.12 EU962966_1(EU962966|pid:none) Zea mays clone 246956 splicing fac... 41 0.12 (O89086) RecName: Full=Putative RNA-binding protein 3; AltName: ... 41 0.12 CU928171_453(CU928171|pid:none) Kluyveromyces thermotolerans str... 41 0.12 BC046695_1(BC046695|pid:none) Xenopus laevis similar to FUS inte... 41 0.12 AC2391(AC2391) RNA-binding protein [imported] - Nostoc sp. (stra... 41 0.12 FN317170_1(FN317170|pid:none) Schistosoma japonicum isolate Anhu... 41 0.12 BT060477_1(BT060477|pid:none) Zea mays full-length cDNA clone ZM... 41 0.12 (P13383) RecName: Full=Nucleolin; AltName: Full=Protein C23; &M... 41 0.12 FN357468_3(FN357468|pid:none) Schistosoma mansoni genome sequenc... 41 0.12 AL670464_3(AL670464|pid:none) Mouse DNA sequence from clone RP23... 41 0.12 AK149632_1(AK149632|pid:none) Mus musculus bone marrow macrophag... 41 0.12 BT076979_1(BT076979|pid:none) Caligus rogercresseyi clone crog-e... 41 0.12 AB025351_1(AB025351|pid:none) Rana catesbeiana mRNA for BFCIRP, ... 41 0.12 AK063879_1(AK063879|pid:none) Oryza sativa Japonica Group cDNA c... 41 0.12 AL583843_2(AL583843|pid:none) Human DNA sequence from clone RP11... 40 0.15 (Q44556) RecName: Full=Putative RNA-binding protein rbpD; &AG23... 40 0.15 EU963748_1(EU963748|pid:none) Zea mays clone 272341 arginine/ser... 40 0.15 BC106519_1(BC106519|pid:none) Xenopus laevis hypothetical protei... 40 0.15 AE013599_3297(AE013599|pid:none) Drosophila melanogaster chromos... 40 0.15 BC118691_1(BC118691|pid:none) Xenopus tropicalis ribonucleic aci... 40 0.15 (P26378) RecName: Full=ELAV-like protein 4; AltName: Full=Parane... 40 0.15 AE014297_1235(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15 AE014297_2975(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15 AY626066_4(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15 AL671915_5(AL671915|pid:none) Mouse DNA sequence from clone RP23... 40 0.15 AE014297_2968(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15 (Q5XG24) RecName: Full=RNA-binding protein with serine-rich doma... 40 0.15 AL583843_1(AL583843|pid:none) Human DNA sequence from clone RP11... 40 0.15 BC055501_1(BC055501|pid:none) Danio rerio TIA1 cytotoxic granule... 40 0.15 (Q5RDA3) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 40 0.15 BC126543_1(BC126543|pid:none) Bos taurus cleavage stimulation fa... 40 0.15 FN316499_1(FN316499|pid:none) Schistosoma japonicum isolate Anhu... 40 0.15 AY626066_5(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15 (Q8HXM1) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 40 0.15 AY626066_1(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15 AY626066_6(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15 AC140068_26(AC140068|pid:none) Medicago truncatula clone mth2-15... 40 0.15 EU616680_1(EU616680|pid:none) Mus musculus betaCstF-64 variant 3... 40 0.15 AY113652_1(AY113652|pid:none) Drosophila melanogaster SD14970 fu... 40 0.15 AL136900_1(AL136900|pid:none) Homo sapiens mRNA; cDNA DKFZp434M1... 40 0.15 EU962006_1(EU962006|pid:none) Zea mays clone 239583 unknown mRNA. 40 0.15 BT003653_1(BT003653|pid:none) Drosophila melanogaster AT01548 fu... 40 0.15 (Q8BL97) RecName: Full=Splicing factor, arginine/serine-rich 7; ... 40 0.15 EF083285_1(EF083285|pid:none) Picea sitchensis clone WS0282_I21 ... 40 0.15 AE014297_2974(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15 EU616682_1(EU616682|pid:none) Mus musculus betaCstF-64 variant 1... 40 0.15 AE014297_2972(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15 AL583843_3(AL583843|pid:none) Human DNA sequence from clone RP11... 40 0.15 AJ719664_1(AJ719664|pid:none) Gallus gallus mRNA for hypothetica... 40 0.15 BC097250_1(BC097250|pid:none) Danio rerio splicing factor, argin... 40 0.15 BC033135_1(BC033135|pid:none) Homo sapiens, Similar to cleavage ... 40 0.15 BC133851_1(BC133851|pid:none) Danio rerio splicing factor, argin... 40 0.15 AK032817_1(AK032817|pid:none) Mus musculus 12 days embryo male w... 40 0.15 AY626066_2(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15 AY069521_1(AY069521|pid:none) Drosophila melanogaster LD23810 fu... 40 0.15 DQ200389_1(DQ200389|pid:none) Solanum tuberosum clone 066H10 unk... 40 0.15 AE014297_2973(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15 AE014296_1805(AE014296|pid:none) Drosophila melanogaster chromos... 40 0.15 BC036071_1(BC036071|pid:none) Homo sapiens ELAV (embryonic letha... 40 0.15 BC041291_1(BC041291|pid:none) Xenopus laevis cleavage stimulatio... 40 0.15 AK166681_1(AK166681|pid:none) Mus musculus blastocyst blastocyst... 40 0.20 AL590443_71(AL590443|pid:none) chromosome III of strain GB-M1 of... 40 0.20 AL451015_4(AL451015|pid:none) Neurospora crassa DNA linkage grou... 40 0.20 AF042383_1(AF042383|pid:none) Mus musculus TLS-associated protei... 40 0.20 AK029128_1(AK029128|pid:none) Mus musculus 10 days neonate skin ... 40 0.20 AL590609_7(AL590609|pid:none) Human DNA sequence from clone RP11... 40 0.20 DQ630738_1(DQ630738|pid:none) Astatotilapia burtoni heterogeneou... 40 0.20 BC098831_1(BC098831|pid:none) Rattus norvegicus FUS interacting ... 40 0.20 T51304(T51304) splicing factor RSp31 [imported] - Arabidopsis th... 40 0.20 AF419332_1(AF419332|pid:none) Homo sapiens TLS-associated protei... 40 0.20 AK135316_1(AK135316|pid:none) Mus musculus 12 days embryo male w... 40 0.20 AK031606_1(AK031606|pid:none) Mus musculus 13 days embryo male t... 40 0.20 AK134289_1(AK134289|pid:none) Mus musculus 13 days embryo foreli... 40 0.20 (P31209) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 40 0.20 AE014296_3043(AE014296|pid:none) Drosophila melanogaster chromos... 40 0.20 (Q96G09) RecName: Full=FUS-interacting serine-arginine-rich prot... 40 0.20 AB172411_1(AB172411|pid:none) Macaca fascicularis brain cDNA clo... 40 0.20 AM457533_1(AM457533|pid:none) Vitis vinifera contig VV78X002778.... 40 0.20 BC153534_1(BC153534|pid:none) Danio rerio DAZ associated protein... 40 0.20 (Q640A2) RecName: Full=Heterogeneous nuclear ribonucleoprotein D... 40 0.20 AJ719320_1(AJ719320|pid:none) Gallus gallus mRNA for hypothetica... 40 0.20 AP007159_303(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.20 AK296175_1(AK296175|pid:none) Homo sapiens cDNA FLJ58902 complet... 40 0.20 M64603_1(M64603|pid:none) Schizosaccharomyces pombe poly(A)-bind... 40 0.20 AM950286_1(AM950286|pid:none) Chironomus tentans mRNA for SR fam... 40 0.20 (P92964) RecName: Full=Arginine/serine-rich-splicing factor RSP3... 40 0.20 (Q9VVE5) RecName: Full=RNA-binding protein Musashi homolog Rbp6;... 40 0.20 AL590609_8(AL590609|pid:none) Human DNA sequence from clone RP11... 40 0.20 AX886243_1(AX886243|pid:none) Sequence 2106 from Patent EP1033401. 40 0.20 (Q8R3C6) RecName: Full=Probable RNA-binding protein 19; AltName:... 40 0.20 AK222994_1(AK222994|pid:none) Homo sapiens mRNA for FUS interact... 40 0.20 AK169071_1(AK169071|pid:none) Mus musculus 17 days embryo kidney... 40 0.20 AK004657_1(AK004657|pid:none) Mus musculus adult male lung cDNA,... 40 0.20 AK073210_1(AK073210|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.20 BC103100_1(BC103100|pid:none) Bos taurus FUS interacting protein... 40 0.20 BC114331_1(BC114331|pid:none) Danio rerio DAZ associated protein... 40 0.20 AL928954_3(AL928954|pid:none) Zebrafish DNA sequence from clone ... 40 0.26 DQ019626_1(DQ019626|pid:none) Triticum aestivum pre-mRNA process... 40 0.26 BC094189_1(BC094189|pid:none) Xenopus laevis ELAV (embryonic let... 40 0.26 X57483_1(X57483|pid:none) X.laevis variant mRNA (X ABP 12-5) for... 40 0.26 CP000393_1589(CP000393|pid:none) Trichodesmium erythraeum IMS101... 40 0.26 FN316492_1(FN316492|pid:none) Schistosoma japonicum isolate Anhu... 40 0.26 FN323507_1(FN323507|pid:none) Schistosoma japonicum isolate Anhu... 40 0.26 AF064592_1(AF064592|pid:none) Schistosoma japonicum RNA-binding ... 40 0.26 AK086398_1(AK086398|pid:none) Mus musculus 15 days embryo head c... 40 0.26 AE016820_759(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 40 0.26 AF130355_1(AF130355|pid:none) Neurospora crassa Pad-1 (pad-1) ge... 40 0.26 CR382126_408(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 40 0.26 FN392319_128(FN392319|pid:none) Pichia pastoris GS115 chromosome... 40 0.26 CP000606_139(CP000606|pid:none) Shewanella loihica PV-4, complet... 40 0.26 CP001326_401(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 40 0.26 FN323494_1(FN323494|pid:none) Schistosoma japonicum isolate Anhu... 40 0.26 BC170539_1(BC170539|pid:none) Xenopus laevis elav like 1, mRNA (... 40 0.26 A96762(A96762) probable RNA-binding glycine-rich protein T9L24.4... 40 0.26 (Q9JLI8) RecName: Full=Squamous cell carcinoma antigen recognize... 40 0.26 AE014298_1983(AE014298|pid:none) Drosophila melanogaster chromos... 40 0.26 FN367827_6(FN367827|pid:none) Schistosoma mansoni genome sequenc... 40 0.26 FN367827_5(FN367827|pid:none) Schistosoma mansoni genome sequenc... 40 0.26 AY150521_1(AY150521|pid:none) Vitis vinifera putative heterogene... 40 0.26 AY225854_1(AY225854|pid:none) Bos taurus nucleolin (NCL) mRNA, p... 40 0.26 BT070880_1(BT070880|pid:none) Picea sitchensis clone WS02758_A02... 39 0.34 (P29341) RecName: Full=Polyadenylate-binding protein 1; ... 39 0.34 AK298990_1(AK298990|pid:none) Homo sapiens cDNA FLJ59219 complet... 39 0.34 (Q9H361) RecName: Full=Polyadenylate-binding protein 3; ... 39 0.34 (Q4R4J7) RecName: Full=Nucleolin; &AB168220_1(AB168220|pid:none... 39 0.34 (P19338) RecName: Full=Nucleolin; AltName: Full=Protein C23; &A... 39 0.34 DQ443394_1(DQ443394|pid:none) Bombyx mori arginine/serine-rich s... 39 0.34 AK118074_1(AK118074|pid:none) Arabidopsis thaliana At4g02430 mRN... 39 0.34 (Q7ZX83) RecName: Full=Heterogeneous nuclear ribonucleoprotein D... 39 0.34 BC114029_1(BC114029|pid:none) Bos taurus RNA binding motif prote... 39 0.34 CR954201_558(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 39 0.34 BT052550_1(BT052550|pid:none) Medicago truncatula clone MTYFD_FE... 39 0.34 AK127608_1(AK127608|pid:none) Homo sapiens cDNA FLJ45706 fis, cl... 39 0.34 CP000585_410(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.34 (Q0WMY5) RecName: Full=Pentatricopeptide repeat-containing prote... 39 0.34 CP000828_1947(CP000828|pid:none) Acaryochloris marina MBIC11017,... 39 0.34 AF364077_1(AF364077|pid:none) Pichia angusta putative peptidyl p... 39 0.34 (Q5R8F7) RecName: Full=Polyadenylate-binding protein 1; ... 39 0.34 DQ120640_1(DQ120640|pid:none) Homo sapiens PABP3 gene, partial c... 39 0.34 S52491(S52491) polyadenylate binding protein II - human &Z48501... 39 0.34 AF033587_1(AF033587|pid:none) Arabidopsis thaliana SRZ21 mRNA, c... 39 0.34 AB002330_1(AB002330|pid:none) Human mRNA for KIAA0332 gene, part... 39 0.34 AP005309_10(AP005309|pid:none) Oryza sativa Japonica Group genom... 39 0.34 BT074603_1(BT074603|pid:none) Osmerus mordax clone omor-rgc-514-... 39 0.34 FN323502_1(FN323502|pid:none) Schistosoma japonicum isolate Anhu... 39 0.34 DQ120645_1(DQ120645|pid:none) Cercopithecus sabaeus PABP3 gene, ... 39 0.34 (P11940) RecName: Full=Polyadenylate-binding protein 1; ... 39 0.34 BC103473_1(BC103473|pid:none) Bos taurus RNA binding motif (RNP1... 39 0.34 (Q5R7X2) RecName: Full=U2-associated protein SR140; AltName: Ful... 39 0.34 AL162972_17(AL162972|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.34 AJ719881_1(AJ719881|pid:none) Gallus gallus mRNA for hypothetica... 39 0.34 AK296440_1(AK296440|pid:none) Homo sapiens cDNA FLJ60621 complet... 39 0.34 Z99279_4(Z99279|pid:none) Caenorhabditis elegans YAC Y57G11A, co... 39 0.34 BT074297_1(BT074297|pid:none) Oncorhynchus mykiss clone omyk-evo... 39 0.34 (Q5RF26) RecName: Full=Nucleolin; &CR857335_1(CR857335|pid:none) 39 0.34 (Q9EPH8) RecName: Full=Polyadenylate-binding protein 1; ... 39 0.34 AK089747_1(AK089747|pid:none) Mus musculus activated spleen cDNA... 39 0.34 BC006474_1(BC006474|pid:none) Homo sapiens, clone IMAGE:2820942,... 39 0.34 AF069298_10(AF069298|pid:none) Arabidopsis thaliana BAC T14P8. ... 39 0.34 AF132026_1(AF132026|pid:none) Homo sapiens testis-specific poly(... 39 0.34 CR940353_826(CR940353|pid:none) Theileria annulata strain Ankara... 39 0.34 CT573072_196(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 37 0.36 BX547938_9(BX547938|pid:none) Zebrafish DNA sequence from clone ... 39 0.45 BX547938_12(BX547938|pid:none) Zebrafish DNA sequence from clone... 39 0.45 AE017349_13(AE017349|pid:none) Cryptococcus neoformans var. neof... 39 0.45 (Q15287) RecName: Full=RNA-binding protein with serine-rich doma... 39 0.45 BX547938_7(BX547938|pid:none) Zebrafish DNA sequence from clone ... 39 0.45
>(Q55FQ0) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa; Short=U1 snRNP 70 kDa; Short=snRNP70; Short=U1-70K; Length = 459
Score = 168 bits (426), Expect(2) = 3e-54 Identities = 81/81 (100%), Positives = 81/81 (100%) Frame = +1
Query: 307 DPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAF 486 DPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAF Sbjct: 86 DPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAF 145
Query: 487 IEFERERDMKAAYKQADGMKI 549 IEFERERDMKAAYKQADGMKI Sbjct: 146 IEFERERDMKAAYKQADGMKI 166
Score = 68.6 bits (166), Expect(2) = 3e-54 Identities = 30/30 (100%), Positives = 30/30 (100%) Frame = +2
Query: 596 KNWKPRKFGGGLGNTRAGGVDVNQTFSGRE 685 KNWKPRKFGGGLGNTRAGGVDVNQTFSGRE Sbjct: 182 KNWKPRKFGGGLGNTRAGGVDVNQTFSGRE 211
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3204285 Number of Hits to DB: 754,468,785 Number of extensions: 9421262 Number of successful extensions: 19674 Number of sequences better than 10.0: 1059 Number of HSP's gapped: 19348 Number of HSP's successfully gapped: 1210 Length of query: 466 Length of database: 1,040,966,779 Length adjustment: 132 Effective length of query: 334 Effective length of database: 618,001,159 Effective search space: 206412387106 Effective search space used: 206412387106 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |