Contig-U08024-1
Contig ID Contig-U08024-1
Contig update 2002. 5. 9
Contig sequence
>Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Contig-U08024-1Q.Seq.d
ACGATATCAAATTCAAAATTTTGTGTCTTTTTTTTTATTATTTGTTTTTA
TTTCTTTTTTTCCATCAAAAGAAAATAATTTATCCAATAAAATAAAATAA
AATAAAATAAAAAAATAAAAATAAAAACCATAATTTTAATAAAACTATAA
ATTTTAAAAAAAAAAAATAANTAANTAAAAAAAAAAAAAAAGGNTTTTAA
AAAAAAA----------ACTGTTGGCCTACTGGNATTAATAATTAAAATG
TGTGTATAAAATTTTACTAATATGTATATTTCTTTAATTTAATAATAAAT
TTAGGGGATCCATATTCAAATTCAGAAACAACTGGTGATCCATATAAAAC
AATATTTGTGTCTAGAATTAGTTATAAAACTACTCAACAAAAGTTAGAAT
TTGAATTTGGTCAATTTGGGCCAATTAAAAGTTTATTTTTAGTAAAAGAT
TCAAATAATCCTGAAAAACATACTGGTTATGCTTTTATTGAATTTGAAAG
AGAAAGAGATATGAAAGCTGCTTATAAACAAGCTGATGGTATGAAAATAG
GATGATAGACGTATTGTAGTTGATATTGAAAGAGGAAGAGTTATAAAAAA
TTGGAAACCAAGAAAATTTGGTGGTGGTCTTGGTAATACAAGAGCAGGTG
GTGTTGATGTGAATCAAACATTCTCTGGTCGTGAAAATGTCTGAATCTAG
AGAAAAAGAAAAAGAAAGAGAAAAAGAAAAAGAAAAAGAAAAAGAAAGAA
TGGAAAAAAATGAAAAAAAGAGATGGTGGTTTATCATCAAATGGTAATAG
AAGTAATGGTATTAGTAGTGGTAGTGGTGGTAGTGGTGGTGATAGAGGAG
ATAGAAGTGATAGAGACAGAGGAGATAGAGGTGATAGAAGTGATAGAAGT
GATAGAGATAGAGAAAGAGGAAGAGGTGATAGAGATCATCGTGGTAGTGG
TGGTGAAAGAGAAAGAGAAAGAGATCAAAGAGATAGGGGTGGTGATAGAG
GTGGTGATAGAGGTGATAGAAGTGATAGAGGAAGAAGTGATAGAGGTGTT
AGAGGTGATAGAAGTGATAGAGGCAGAGATGATAGAGAAAGAGGAAGAGA
TGATAGAGGTGATAGAGGTAGAGATGATAGAAGAGGTGGCAGCGATAGAG
ATAGAGATAGAGGAAGCAGAGATGATAGAGGTGATAGAGATGACAGAAGT
GATAGAGGTAGAGATGATAGAAGAGGTGGCAGCGATAGAGATCATCGTAT
TGATGAAAGAAGAAGAGATCAAAGAGATTATGGATCAATTAGTGATGCAC
ATTTTGATCATTTCCAATATCAACCACAACAACATCATCATCATCAACAA
AATCATCAATCACATCATAATCAACCACATCCAGAACGTGTAANATAGAG

Gap gap included
Contig length 1390
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1279728
End point 1281119
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 4
Link to clone list U08024
List of clone(s)

est1=VSJ524F,1,208
est2=SFI361F,209,696
est3=VSJ524Z,410,871
est4=SFI361Z,733,1392
Translated Amino Acid sequence
tisnskfcvfffiicfyfffsikrk*fiq*nkik*nkkikiktiilikl*ilkkknx*XK
KKKKXFKKK---

---TVGLLXLIIKMCV*nftnmyisli***i*gihiqiqkqlvihikqylclelviklln
ks*nlnlvnlgqlkvyf**kiqiilknilvmlllnlkekei*kllinklmv*k*ddrriv
vdiergrviknwkprkfggglgntraggvdvnqtfsgrenv*i*rkrkrkrkrkrkrkrk
ngkk*kkemvvyhqmvievmvlvvvvvvvvvieeievieteeievievievieiekeeev
ieiivvvvvkekekeikeigvvievvievievieeevievlevievieaemiekeeemie
vievemieevaaieieieeaemieviemtevievemieevaaieiivlmkeeeikeimdq
lvmhiliisninhnniiiinkiinhiiinhiqnv*xr


Translated Amino Acid sequence (All Frames)
Frame A:
tisnskfcvfffiicfyfffsikrk*fiq*nkik*nkkikiktiilikl*ilkkknx*XK
KKKKXFKKK---

---TVGLLXLIIKMCV*nftnmyisli***i*gihiqiqkqlvihikqylclelviklln
ks*nlnlvnlgqlkvyf**kiqiilknilvmlllnlkekei*kllinklmv*k*ddrriv
vdiergrviknwkprkfggglgntraggvdvnqtfsgrenv*i*rkrkrkrkrkrkrkrk
ngkk*kkemvvyhqmvievmvlvvvvvvvvvieeievieteeievievievieiekeeev
ieiivvvvvkekekeikeigvvievvievievieeevievlevievieaemiekeeemie
vievemieevaaieieieeaemieviemtevievemieevaaieiivlmkeeeikeimdq
lvmhiliisninhnniiiinkiinhiiinhiqnv*xr

Frame B:
ryqiqnfvsffllfvfisffpskennlsnkik*nkikk*k*kp*f**nykf*kkkixx*k
kkkrxlkk---

---llaywx**lkcvykillicifl*fnnkfrgsifkfrnnw*si*nnicv*n*l*nyst
kvri*iwsiwan*kfifskrfk*s*ktywlcfy*i*krkryescl*ts*wyenrmidvl*
lilkeeel*kignqenlvvvlviqeqvvlm*ikhslvvkmsesrekekerekekekeker
meknekkrwwfiikw**k*wy**w*ww*ww**rr*k**rqrr*r**k**k**r*rkrkr*
*rssw*ww*krkrkrskr*gw**rw**r**k**rkk**rc*r**k**rqr**rkrkr**r
**r*r**krwqr*r*r*rkqr**r**r*qk**r*r**krwqr*rssy**kkkrskrlwin
**ctf*sfpisttttsssstkssits*sttsrtcxie

Frame C:
dikfkilclffyylflflffhqkkiiypik*nkik*knknknhnfnktinfkkkk*xxkk
kkkgf*kk---

---cwptginn*nvcikfy*yvyffnliinlgdpysnsettgdpyktifvsrisykttqq
klefefgqfgpikslflvkdsnnpekhtgyafiefererdmkaaykqadgmkig**tycs
*y*krksykkletkkiwwwsw*yksrwc*cesnilws*kclnlekkkkkekkkkkkkkke
wkkmkkrdgglssngnrsngissgsggsggdrgdrsdrdrgdrgdrsdrsdrdrergrgd
rdhrgsggerererdqrdrggdrggdrgdrsdrgrsdrgvrgdrsdrgrddrergrddrg
drgrddrrggsdrdrdrgsrddrgdrddrsdrgrddrrggsdrdhriderrrdqrdygsi
sdahfdhfqyqpqqhhhhqqnhqshhnqphpervx*

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U08024-1 (Contig-U08024-1Q)
/CSM_Contig/Contig-U08024-1Q.Seq.d
(1400 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Conti... 948 0.0
Contig-U11366-1 (Contig-U11366-1Q) /CSM_Contig/Conti... 56 1e-07
Contig-U12753-1 (Contig-U12753-1Q) /CSM_Contig/Conti... 54 4e-07
Contig-U04046-1 (Contig-U04046-1Q) /CSM_Contig/Conti... 52 2e-06
Contig-U11427-1 (Contig-U11427-1Q) /CSM_Contig/Conti... 50 7e-06
Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U08208-1 (Contig-U08208-1Q) /CSM_Contig/Conti... 48 3e-05
Contig-U08918-1 (Contig-U08918-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U12744-1 (Contig-U12744-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11340-1 (Contig-U11340-1Q) /CSM_Contig/Conti... 44 4e-04

>Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Contig-U08024-1Q.Seq.d
Length = 1400

Score = 948 bits (478), Expect = 0.0
Identities = 481/481 (100%)
Strand = Plus / Plus


Query: 218 actgttggcctactggnattaataattaaaatgtgtgtataaaattttactaatatgtat 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 actgttggcctactggnattaataattaaaatgtgtgtataaaattttactaatatgtat 277


Query: 278 atttctttaatttaataataaatttaggggatccatattcaaattcagaaacaactggtg 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atttctttaatttaataataaatttaggggatccatattcaaattcagaaacaactggtg 337


Query: 338 atccatataaaacaatatttgtgtctagaattagttataaaactactcaacaaaagttag 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atccatataaaacaatatttgtgtctagaattagttataaaactactcaacaaaagttag 397


Query: 398 aatttgaatttggtcaatttgggccaattaaaagtttatttttagtaaaagattcaaata 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aatttgaatttggtcaatttgggccaattaaaagtttatttttagtaaaagattcaaata 457


Query: 458 atcctgaaaaacatactggttatgcttttattgaatttgaaagagaaagagatatgaaag 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 atcctgaaaaacatactggttatgcttttattgaatttgaaagagaaagagatatgaaag 517


Query: 518 ctgcttataaacaagctgatggtatgaaaataggatgatagacgtattgtagttgatatt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ctgcttataaacaagctgatggtatgaaaataggatgatagacgtattgtagttgatatt 577


Query: 578 gaaagaggaagagttataaaaaattggaaaccaagaaaatttggtggtggtcttggtaat 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaaagaggaagagttataaaaaattggaaaccaagaaaatttggtggtggtcttggtaat 637


Query: 638 acaagagcaggtggtgttgatgtgaatcaaacattctctggtcgtgaaaatgtctgaatc 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 acaagagcaggtggtgttgatgtgaatcaaacattctctggtcgtgaaaatgtctgaatc 697


Query: 698 t 698
|
Sbjct: 698 t 698


Score = 260 bits (131), Expect = 4e-69
Identities = 131/131 (100%)
Strand = Plus / Plus


Query: 926 gtgatagagatcatcgtggtagtggtggtgaaagagaaagagaaagagatcaaagagata 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 926 gtgatagagatcatcgtggtagtggtggtgaaagagaaagagaaagagatcaaagagata 985


Query: 986 ggggtggtgatagaggtggtgatagaggtgatagaagtgatagaggaagaagtgatagag 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 986 ggggtggtgatagaggtggtgatagaggtgatagaagtgatagaggaagaagtgatagag 1045


Query: 1046 gtgttagaggt 1056
|||||||||||
Sbjct: 1046 gtgttagaggt 1056


Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Plus


Query: 1216 gatagaagaggtggcagcgatagagatcatcgtattgatgaaagaagaagagatcaaaga 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1216 gatagaagaggtggcagcgatagagatcatcgtattgatgaaagaagaagagatcaaaga 1275


Query: 1276 gattatggatcaattagtgatgcacattttgatcatttccaat 1318
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 gattatggatcaattagtgatgcacattttgatcatttccaat 1318


Score = 192 bits (97), Expect = 7e-49
Identities = 97/97 (100%)
Strand = Plus / Plus


Query: 770 gagatggtggtttatcatcaaatggtaatagaagtaatggtattagtagtggtagtggtg 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gagatggtggtttatcatcaaatggtaatagaagtaatggtattagtagtggtagtggtg 829


Query: 830 gtagtggtggtgatagaggagatagaagtgatagaga 866
|||||||||||||||||||||||||||||||||||||
Sbjct: 830 gtagtggtggtgatagaggagatagaagtgatagaga 866


Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Plus


Query: 989 gtggtgatagaggtggtgatagaggtgatagaagtgatagaggaagaagtgatagaggtg 1048
|||||| ||| |||||||||||||| |||||||||||||||| ||| | ||||||||||
Sbjct: 824 gtggtggtagtggtggtgatagaggagatagaagtgatagagacagaggagatagaggtg 883


Query: 1049 ttaga 1053
||||
Sbjct: 884 ataga 888


Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Plus


Query: 824 gtggtggtagtggtggtgatagaggagatagaagtgatagag 865
|||||| ||| |||||||||||||| ||||||||||||||||
Sbjct: 989 gtggtgatagaggtggtgatagaggtgatagaagtgatagag 1030


Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 128 ccataattttaataaaactataaatttt 155
||||||||||||||||||||||||||||
Sbjct: 128 ccataattttaataaaactataaatttt 155


Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus


Query: 1003 ggtgatagaggtgatagaagtgatagaggaagaagtgatagag 1045
|||| |||||||||||||||||||||||| ||| ||||||||
Sbjct: 1045 ggtgttagaggtgatagaagtgatagaggcagagatgatagag 1087


Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 1216 gatagaagaggtggcagcgatagagat 1242
|||||||||||||||||||||||||||
Sbjct: 1126 gatagaagaggtggcagcgatagagat 1152


Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 1003 ggtgatagaggtgatagaagtgatagag 1030
||||||||| ||||||||||||||||||
Sbjct: 880 ggtgatagaagtgatagaagtgatagag 907


Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 1006 gatagaggtgatagaagtgataga 1029
||||||||||||||||||||||||
Sbjct: 874 gatagaggtgatagaagtgataga 897


Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1376 cacatccagaacgtgtaanatagag 1400
|||||||||||||||||||||||||
Sbjct: 1376 cacatccagaacgtgtaanatagag 1400


Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus


Query: 1003 ggtgatagaggtgatagaagtgatagaggaagaagtgataga 1044
|||||||||| ||| |||||||||||||| ||| |||||||
Sbjct: 1180 ggtgatagagatgacagaagtgatagaggtagagatgataga 1221


Score = 42.1 bits (21), Expect = 0.002
Identities = 27/29 (93%)
Strand = Plus / Plus


Query: 838 ggtgatagaggagatagaagtgatagaga 866
||||||||| | |||||||||||||||||
Sbjct: 880 ggtgatagaagtgatagaagtgatagaga 908


Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Plus


Query: 838 ggtgatagaggagatagaagtgatagag 865
|||| |||||| ||||||||||||||||
Sbjct: 1045 ggtgttagaggtgatagaagtgatagag 1072


Score = 40.1 bits (20), Expect = 0.006
Identities = 23/24 (95%)
Strand = Plus / Plus


Query: 841 gatagaggagatagaagtgataga 864
|||||||| |||||||||||||||
Sbjct: 874 gatagaggtgatagaagtgataga 897


Score = 36.2 bits (18), Expect = 0.099
Identities = 27/30 (90%)
Strand = Plus / Plus


Query: 1027 agaggaagaagtgatagaggtgttagaggt 1056
||||||||| ||||||||||| |||||||
Sbjct: 1090 agaggaagagatgatagaggtgatagaggt 1119


Score = 36.2 bits (18), Expect = 0.099
Identities = 24/26 (92%)
Strand = Plus / Plus


Query: 1004 gtgatagaggtgatagaagtgataga 1029
|||||||||||| |||| ||||||||
Sbjct: 1037 gtgatagaggtgttagaggtgataga 1062


Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 941 gtggtagtggtggtgaaagag 961
|||||||||||||||| ||||
Sbjct: 827 gtggtagtggtggtgatagag 847


Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 844 agaggagatagaagtgataga 864
|||||||||||| ||||||||
Sbjct: 868 agaggagatagaggtgataga 888


Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 827 gtggtagtggtggtgatagag 847
|||||||||||||||| ||||
Sbjct: 941 gtggtagtggtggtgaaagag 961


Score = 34.2 bits (17), Expect = 0.39
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1 acgatatcaaattcaaa 17
|||||||||||||||||
Sbjct: 1 acgatatcaaattcaaa 17


Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1005 tgatagaggtgataga 1020
||||||||||||||||
Sbjct: 1173 tgatagaggtgataga 1188


Score = 32.2 bits (16), Expect = 1.5
Identities = 25/28 (89%)
Strand = Plus / Plus


Query: 838 ggtgatagaggagatagaagtgatagag 865
|||||||||| || |||||||||||||
Sbjct: 1180 ggtgatagagatgacagaagtgatagag 1207


Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1005 tgatagaggtgataga 1020
||||||||||||||||
Sbjct: 1101 tgatagaggtgataga 1116


Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 969 aagagatcaaagagat 984
||||||||||||||||
Sbjct: 1263 aagagatcaaagagat 1278


Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1263 aagagatcaaagagat 1278
||||||||||||||||
Sbjct: 969 aagagatcaaagagat 984


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 961 gaaagagaaagagat 975
|||||||||||||||
Sbjct: 496 gaaagagaaagagat 510


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 928 gatagagatcatcgt 942
|||||||||||||||
Sbjct: 1234 gatagagatcatcgt 1248


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 954 tgaaagagaaagaga 968
|||||||||||||||
Sbjct: 495 tgaaagagaaagaga 509


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 496 gaaagagaaagagat 510
|||||||||||||||
Sbjct: 961 gaaagagaaagagat 975


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 495 tgaaagagaaagaga 509
|||||||||||||||
Sbjct: 954 tgaaagagaaagaga 968


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1033 agaagtgatagaggt 1047
|||||||||||||||
Sbjct: 1195 agaagtgatagaggt 1209


Score = 30.2 bits (15), Expect = 6.1
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1234 gatagagatcatcgt 1248
|||||||||||||||
Sbjct: 928 gatagagatcatcgt 942


>Contig-U11366-1 (Contig-U11366-1Q) /CSM_Contig/Contig-U11366-1Q.Seq.d
Length = 1878

Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 817 agtggtagtggtggtagtggtggtgata 844
||||||||||||||||||||||||||||
Sbjct: 1599 agtggtagtggtggtagtggtggtgata 1626


Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 941 gtggtagtggtggtga 956
||||||||||||||||
Sbjct: 1609 gtggtagtggtggtga 1624


Score = 30.2 bits (15), Expect = 6.1
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 813 tagtagtggtagtggtggt 831
|||| ||||||||||||||
Sbjct: 1604 tagtggtggtagtggtggt 1622


>Contig-U12753-1 (Contig-U12753-1Q) /CSM_Contig/Contig-U12753-1Q.Seq.d
Length = 1169

Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus


Query: 815 gtagtggtagtggtggtagtggtggtgatag 845
|||||||||||||||||||||||||| ||||
Sbjct: 42 gtagtggtagtggtggtagtggtggtaatag 72


Score = 32.2 bits (16), Expect = 1.5
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 813 tagtagtggtagtggtggta 832
|||| |||||||||||||||
Sbjct: 49 tagtggtggtagtggtggta 68


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,272
Number of Sequences: 6905
Number of extensions: 18272
Number of successful extensions: 3338
Number of sequences better than 10.0: 782
length of query: 1400
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1384
effective length of database: 5,564,391
effective search space: 7701117144
effective search space used: 7701117144
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.12
Homology vs DNA
Query= Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Contig-U08024-1Q.Seq.d
(1400 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ389131) Dictyostelium discoideum cDNA clone:dds17j15, 5' ... 783 0.0 2
(AU270052) Dictyostelium discoideum vegetative cDNA clone:VS... 270 e-149 6
(BJ402659) Dictyostelium discoideum cDNA clone:dds17j15, 3' ... 161 3e-60 3
(DY889599) CeleSEQ11528 Cunninghamella elegans pBluescript (... 74 8e-10 3
(FK540773) 454GmaGlobSeed275405 Soybean Seeds Containing Glo... 74 3e-09 2
(CX017330) EST 1039 Wild type Ugni blanc SSH Library Vitis v... 64 5e-09 2
(CF604111) BACCA01_001437 Grape Berry pSPORT1 Library Vitis ... 64 5e-09 2
(CA801738) sat17b06.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 74 7e-09 2
(FD781892) 03PA2_T7_029_D06_08AUG2005_042 03PA2 Phaseolus an... 66 2e-08 3
(AB236848) Trifolium pratense RNA for putative U1 snRNP 70K ... 74 2e-08 1
(DW017934) EST1226895 MTY Medicago truncatula cDNA clone MTY... 74 2e-08 1
(BF646398) NF072B02EC1F1016 Elicited cell culture Medicago t... 74 2e-08 1
(FG145681) AGN_RPC011xe07f1.ab1 AGN_RPC Nicotiana tabacum cD... 56 8e-08 2
(EB425098) KF8C.102F22F.051214T7 KF8 Nicotiana tabacum cDNA ... 56 8e-08 2
(FG643195) TT-40_P17 K326 early senescent leaf library Nicot... 56 8e-08 2
(FG186777) AGN_PNL211bf1_g7.trimmed.seq AGN_PNL Nicotiana ta... 56 8e-08 2
(CS224352) Sequence 667 from Patent WO2005111217. 56 8e-08 2
(EL503160) F09_PFLAB1-LARGE-PLATE8B.AB1 Blood stage Plasmodi... 54 2e-07 2
(DV700877) CGN-46960 Seed of Late Development Stage Coffea c... 66 4e-06 1
(DV676772) CGN-13910 Seed of Middle Development Stage Coffea... 66 4e-06 1
(CK262150) EST708228 potato abiotic stress cDNA library Sola... 56 4e-06 2
(DV622855) 92252.1 Cold Sweetening C Solanum tuberosum cDNA ... 56 4e-06 2
(DV623862) 93338.1 Cold Sweetening C Solanum tuberosum cDNA ... 56 4e-06 2
(CK427016) rl70c01.y1 Meloidogyne javanica J2 SL1 pGEM Meloi... 50 5e-06 2
(CK427012) rl70b05.y1 Meloidogyne javanica J2 SL1 pGEM Meloi... 50 5e-06 2
(CK427054) rl70g02.y1 Meloidogyne javanica J2 SL1 pGEM Meloi... 50 6e-06 2
(CK427035) rl70d09.y1 Meloidogyne javanica J2 SL1 pGEM Meloi... 50 6e-06 2
(FG201635) AGN_PNL231df1_b2.trimmed.seq AGN_PNL Nicotiana ta... 64 7e-06 2
(FG137350) AGN_ELP005xl14f1.ab1 AGN_ELP Nicotiana tabacum cD... 64 8e-06 2
(FG133552) AGN_ELP017xd22f1.ab1 AGN_ELP Nicotiana tabacum cD... 64 8e-06 2
(ES811790) UFL_322_25 Cotton fiber 0-10 day post anthesis Go... 64 2e-05 1
(ES809020) UFL_208_51 Cotton fiber 0-10 day post anthesis Go... 64 2e-05 1
(DW484944) GH_RMIRS_050_B05_F Cotton Normalized Library rand... 64 2e-05 1
(DW484943) GH_RMIRS_050_B05_045_R Cotton Normalized Library ... 64 2e-05 1
(DT571142) EST1081782 GH_TMO Gossypium hirsutum cDNA, mRNA s... 64 2e-05 1
(DT555075) EST1065715 GH_TMO Gossypium hirsutum cDNA, mRNA s... 64 2e-05 1
(DT553790) EST1064430 GH_TMO Gossypium hirsutum cDNA, mRNA s... 64 2e-05 1
(DT553209) EST1063849 GH_TMO Gossypium hirsutum cDNA, mRNA s... 64 2e-05 1
(DT466652) GH_CHX19D02.r GH_CHX Gossypium hirsutum cDNA clon... 64 2e-05 1
(CO105995) GR__Eb0036H03.r GR__Eb Gossypium raimondii cDNA c... 64 2e-05 1
(BG443754) GA__Ea0021P10f Gossypium arboreum 7-10 dpa fiber ... 64 2e-05 1
(DR908619) USDA-FP_16747 Citrus sinensis phloem Citrus sinen... 56 5e-05 3
(EX244517) PY03112X1B08.f1 PY03 Carica papaya cDNA, mRNA seq... 56 2e-04 2
(CV863022) ACAB-aaa05d02.g1 Hydra UCI6- barcoded EST's Hydra... 38 2e-04 3
(DV624604) 94171.1 Cold Sweetening C Solanum tuberosum cDNA ... 50 2e-04 2
(EX242455) PY03070X1G04.f1 PY03 Carica papaya cDNA, mRNA seq... 56 2e-04 2
(DT618570) ACAH-aaa68d02.g1 Hydra_EST_UCI-10 Hydra magnipapi... 38 3e-04 3
(AC148484) Medicago truncatula chromosome 8 clone mth2-46g10... 58 0.001 1
(AC147964) Medicago truncatula chromosome 8 clone mth2-5i18,... 58 0.001 1
(DW488286) GH_RMIRS_068_G05_R Cotton Normalized Library rand... 58 0.001 1
(DW488285) GH_RMIRS_068_G05_F Cotton Normalized Library rand... 58 0.001 1
(DW486847) GH_RMIRS_060_F12_R Cotton Normalized Library rand... 58 0.001 1
(DW486846) GH_RMIRS_060_F12_F Cotton Normalized Library rand... 58 0.001 1
(CV708458) UCRPT01_0011F18_r Poncirus trifoliata CTV-challen... 56 0.001 2
(BG350286) 086F04 Mature tuber lambda ZAP Solanum tuberosum ... 56 0.001 2
(CK251517) EST735154 potato callus cDNA library, normalized ... 56 0.001 2
(CX078229) UCRCS08_7G11_b Parent Washington Navel Orange Cal... 56 0.002 2
(EY800004) CR05-C3-701-091-A07-CT.F Mandarin fruit, developm... 56 0.002 2
(DY298150) IC0AAA94DB03RM1 CitNFL Citrus clementina cDNA 5',... 56 0.002 2
(DY274489) IC0AAA36DC11RM1 CitNFL Citrus clementina cDNA 5',... 56 0.002 2
(DY290371) IC0AAA75AH06RM1 CitNFL Citrus clementina cDNA 5',... 56 0.002 2
(DY262609) IC0AAA100BG10RM1 CitNFL Citrus clementina cDNA 5'... 56 0.002 2
(EL933010) Centeaurea_plate-007_C13.trimmed.seq Centaurea no... 56 0.004 1
(CV707926) UCRPT01_0010I16_r Poncirus trifoliata CTV-challen... 56 0.004 1
(CA847552) EST0460 CM334 Root cDNA Capsicum annuum cDNA clon... 56 0.004 1
(BG888115) EST513966 cSTD Solanum tuberosum cDNA clone cSTD8... 56 0.004 1
(FG528488) 030826KAZD001007AG (KAZD) Actinidia chinensis you... 56 0.004 1
(FG523009) 030703KAZB012855HT (KAZB) Actinidia chinensis you... 56 0.004 1
(FG522141) 030702KAZB017469HT (KAZB) Actinidia chinensis you... 56 0.004 1
(EY105891) CAZI4467.fwd CAZI Artemisia annua normalized leaf... 56 0.004 1
(EY103610) CAZI3264.fwd CAZI Artemisia annua normalized leaf... 56 0.004 1
(DR934090) EST1125629 Aquilegia cDNA library Aquilegia formo... 44 0.012 2
(DR921041) EST1112580 Aquilegia cDNA library Aquilegia formo... 44 0.012 2
(DT764503) EST1198352 Aquilegia cDNA library Aquilegia formo... 44 0.012 2
(DR952509) EST1144048 Aquilegia cDNA library Aquilegia formo... 44 0.012 2
(DT762837) EST1196686 Aquilegia cDNA library Aquilegia formo... 44 0.012 2
(DT755649) EST1189498 Aquilegia cDNA library Aquilegia formo... 44 0.012 2
(FG200425) AGN_PNL230af1_f4.trimmed.seq AGN_PNL Nicotiana ta... 38 0.012 2
(DT737613) EST1171462 Aquilegia cDNA library Aquilegia formo... 44 0.012 2
(DT736300) EST1170149 Aquilegia cDNA library Aquilegia formo... 44 0.012 2
(EE009355) ROE00005339 Rhizopus oryzae Company Rhizopus oryz... 44 0.012 2
(EY217879) PRAG-aaa41f01.g1 Sand_fly_EST_Normalized Phleboto... 42 0.012 2
(DR923697) EST1115236 Aquilegia cDNA library Aquilegia formo... 44 0.013 2
(AL844509) Plasmodium falciparum chromosome 13. 54 0.015 1
(EG959769) AU_Ich_010C_B11 Whole organism normalized cDNA li... 42 0.038 2
(CF654156) tac74a02.x1 Hydra EST -IV Hydra magnipapillata cD... 40 0.047 2
(DR169818) 21_P13:A Triphysaria versicolor root-tip, early D... 52 0.058 1
(EY184489) CBTI9562.b1_D16.ab1:P Triphysaria pusilla root ti... 52 0.058 1
(EY174814) CBTI4800.b1_P23.ab1:P Triphysaria pusilla root ti... 52 0.058 1
(EY171494) CBTI3227.b1_F15.ab1:P Triphysaria pusilla root ti... 52 0.058 1
(EY157741) CBTN6789.b1_I18.ab1:P Triphysaria pusilla root ti... 52 0.058 1
(EY153300) CBTN4764.b1_H15.ab1:P Triphysaria pusilla root ti... 52 0.058 1
(EY148482) CBTN11287.b1_N13.ab1:P Triphysaria pusilla root t... 52 0.058 1
(DY448123) HSAA-aaa14c04.g1 UCI-11 Hydra vulgaris cDNA 5' si... 44 0.067 2
(BJ429369) Dictyostelium discoideum cDNA clone:ddv3b12, 3' e... 40 0.14 3
(BJ428691) Dictyostelium discoideum cDNA clone:ddv12j22, 3' ... 40 0.16 3
(AP007781) Lotus japonicus genomic DNA, chromosome 4, clone:... 50 0.23 1
(DY494860) sh2P0014C18_F.ab1 adult sheep fracture callus 7d ... 50 0.23 1
(DN534553) 1367519 MARC 7BOV Bos taurus cDNA 5', mRNA sequence. 50 0.23 1
(CK233822) re20b03.y1 Meloidogyne incognita parasitic J2 J3 ... 40 0.23 2

>(BJ389131) Dictyostelium discoideum cDNA clone:dds17j15, 5' end,
single read.
Length = 488

Score = 783 bits (395), Expect(2) = 0.0
Identities = 395/395 (100%)
Strand = Plus / Plus


Query: 304 ggggatccatattcaaattcagaaacaactggtgatccatataaaacaatatttgtgtct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ggggatccatattcaaattcagaaacaactggtgatccatataaaacaatatttgtgtct 146


Query: 364 agaattagttataaaactactcaacaaaagttagaatttgaatttggtcaatttgggcca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 agaattagttataaaactactcaacaaaagttagaatttgaatttggtcaatttgggcca 206


Query: 424 attaaaagtttatttttagtaaaagattcaaataatcctgaaaaacatactggttatgct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attaaaagtttatttttagtaaaagattcaaataatcctgaaaaacatactggttatgct 266


Query: 484 tttattgaatttgaaagagaaagagatatgaaagctgcttataaacaagctgatggtatg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tttattgaatttgaaagagaaagagatatgaaagctgcttataaacaagctgatggtatg 326


Query: 544 aaaataggatgatagacgtattgtagttgatattgaaagaggaagagttataaaaaattg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaaataggatgatagacgtattgtagttgatattgaaagaggaagagttataaaaaattg 386


Query: 604 gaaaccaagaaaatttggtggtggtcttggtaatacaagagcaggtggtgttgatgtgaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaaaccaagaaaatttggtggtggtcttggtaatacaagagcaggtggtgttgatgtgaa 446


Query: 664 tcaaacattctctggtcgtgaaaatgtctgaatct 698
|||||||||||||||||||||||||||||||||||
Sbjct: 447 tcaaacattctctggtcgtgaaaatgtctgaatct 481

Score = 32.2 bits (16), Expect(2) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 218 actgttggcctactgg 233
||||||||||||||||
Sbjct: 1 actgttggcctactgg 16

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 721,015,493
Number of extensions: 47349717
Number of successful extensions: 3978880
Number of sequences better than 10.0: 176
Length of query: 1400
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1376
Effective length of database: 97,308,875,965
Effective search space: 133897013327840
Effective search space used: 133897013327840
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Contig-U08024-1Q.Seq.d
(1400 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q55FQ0) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 168 3e-54
AB236848_1(AB236848|pid:none) Trifolium pratense RNA for putativ... 92 1e-25
AC148484_5(AC148484|pid:none) Medicago truncatula clone mth2-46g... 92 2e-25
AY648811_1(AY648811|pid:none) Danio rerio U1 small ribonucleopro... 90 2e-24
(P09406) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 90 3e-24
BC108447_1(BC108447|pid:none) Xenopus laevis U1 70K, mRNA (cDNA ... 90 3e-24
BC097714_1(BC097714|pid:none) Xenopus laevis U1 70K, mRNA (cDNA ... 90 3e-24
BC077089_1(BC077089|pid:none) Danio rerio small nuclear ribonucl... 89 4e-24
(Q66II8) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 87 1e-23
BC167051_1(BC167051|pid:none) Rattus norvegicus U1 small nuclear... 87 1e-23
(Q62376) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 87 1e-23
(Q9UE45) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 87 1e-23
M57939_2(M57939|pid:none) Human small nuclear ribonucleoprotein ... 87 1e-23
S04336(S04336) U1 snRNP 70K protein (long form) - mouse (fragmen... 87 1e-23
AK011564_1(AK011564|pid:none) Mus musculus 10 days embryo whole ... 87 1e-23
A36311(A36311) 70K U1 small nuclear ribonucleoprotein - fruit fl... 88 2e-23
(P17133) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 88 2e-23
AK293120_1(AK293120|pid:none) Homo sapiens cDNA FLJ77404 complet... 86 3e-23
AK248084_1(AK248084|pid:none) Dugesia japonica mRNA for snRNP70K... 89 2e-22
DQ377062_1(DQ377062|pid:none) Oryza sativa (japonica cultivar-gr... 91 3e-22
AP008216_44(AP008216|pid:none) Oryza sativa (japonica cultivar-g... 91 3e-22
AP007166_420(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 97 8e-22
AM270324_33(AM270324|pid:none) Aspergillus niger contig An14c017... 95 5e-21
S28147(S28147)U1 snRNP 70K protein - Arabidopsis thaliana (fragm... 89 2e-17
AE017341_133(AE017341|pid:none) Cryptococcus neoformans var. neo... 84 1e-16
CP000585_274(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 73 7e-16
(O13829) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 80 2e-15
U21320_5(U21320|pid:none) Caenorhabditis elegans cosmid K04G7, c... 77 9e-15
CP001160_235(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 70 1e-14
FN357313_28(FN357313|pid:none) Schistosoma mansoni genome sequen... 75 3e-14
AY815316_1(AY815316|pid:none) Schistosoma japonicum SJCHGC02307 ... 74 1e-13
AM910993_34(AM910993|pid:none) Plasmodium knowlesi strain H chro... 74 2e-13
AK099033_1(AK099033|pid:none) Oryza sativa Japonica Group cDNA c... 69 4e-12
BX538350_45(BX538350|pid:none) Cryptosporidium parvum chromosome... 62 3e-11
(Q1LZH0) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 64 3e-11
S04824(S04824)U1 snRNP 70K protein (short form) - mouse (fragment) 72 4e-11
S00674(S00674;A37108) U1 snRNP 70K protein (clone RNP FL 1.7) - ... 72 4e-11
BT066750_1(BT066750|pid:none) Zea mays full-length cDNA clone ZM... 64 5e-11
EU953346_1(EU953346|pid:none) Zea mays clone 1400990 unknown mRNA. 64 5e-11
(Q9D384) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 64 5e-11
AK039064_1(AK039064|pid:none) Mus musculus adult male hypothalam... 64 5e-11
(Q5U1W5) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 64 9e-11
CR382131_452(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 69 1e-10
(Q05AT9) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 61 1e-10
AC002335_10(AC002335|pid:none) Arabidopsis thaliana chromosome 2... 62 4e-10
(Q16560) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 60 4e-10
DQ215256_1(DQ215256|pid:none) Taeniopygia guttata clone 0058P005... 58 6e-09
BC167878_1(BC167878|pid:none) Xenopus tropicalis cDNA clone MGC:... 57 7e-09
CU633900_643(CU633900|pid:none) Podospora anserina genomic DNA c... 64 1e-08
CP000499_499(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 54 3e-08
(Q4KMD3) RecName: Full=U11/U12 small nuclear ribonucleoprotein 3... 56 4e-08
BC095150_1(BC095150|pid:none) Danio rerio small nuclear ribonucl... 56 3e-06
AY627767_1(AY627767|pid:none) Zea mays U1 snRNP mRNA, complete c... 56 4e-06
(Q00916) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa... 51 5e-06
U52909_2(U52909|pid:none) Arabidopsis thaliana U1 snRNP 70K prot... 54 1e-05
DQ377063_1(DQ377063|pid:none) Oryza sativa (japonica cultivar-gr... 54 1e-05
CR380959_546(CR380959|pid:none) Candida glabrata strain CBS138 c... 50 1e-05
BC167357_1(BC167357|pid:none) Xenopus tropicalis peptidylprolyl ... 52 4e-05
AK014406_1(AK014406|pid:none) Mus musculus 12 days embryo embryo... 52 5e-05
AK017370_1(AK017370|pid:none) Mus musculus 6 days neonate head c... 52 5e-05
AK092069_1(AK092069|pid:none) Homo sapiens cDNA FLJ34750 fis, cl... 52 5e-05
AK012371_1(AK012371|pid:none) Mus musculus 11 days embryo whole ... 52 5e-05
BC064134_1(BC064134|pid:none) Homo sapiens peptidylprolyl isomer... 52 5e-05
(Q8WUA2) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 52 5e-05
AK167258_1(AK167258|pid:none) Mus musculus blastocyst blastocyst... 52 5e-05
(Q60990) RecName: Full=RNA-binding motif protein, Y chromosome, ... 51 1e-04
(O35698) RecName: Full=RNA-binding motif protein, Y chromosome, ... 50 1e-04
AE016817_337(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 47 2e-04
(Q8N7X1) RecName: Full=Putative uncharacterized protein CXorf55; 50 2e-04
BC150670_1(BC150670|pid:none) Mus musculus RNA binding motif pro... 50 2e-04
AP008247_3(AP008247|pid:none) Oryza sativa Japonica Group genomi... 49 3e-04
BX248523_3(BX248523|pid:none) Zebrafish DNA sequence from clone ... 49 3e-04
BC056814_1(BC056814|pid:none) Danio rerio peptidylprolyl isomera... 49 3e-04
T45117(T45117) hU1-70K protein (286 AA) [imported] - human (frag... 47 4e-04
AF279289_1(AF279289|pid:none) Homo sapiens testes-specific heter... 49 6e-04
AF069682_1(AF069682|pid:none) Homo sapiens testes specific heter... 48 7e-04
AK292271_1(AK292271|pid:none) Homo sapiens cDNA FLJ76931 complet... 48 7e-04
(Q4WAQ9) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 48 0.001
(Q29RT0) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 48 0.001
FN357312_50(FN357312|pid:none) Schistosoma mansoni genome sequen... 48 0.001
BC057796_1(BC057796|pid:none) Homo sapiens RNA binding motif pro... 47 0.001
AM270259_24(AM270259|pid:none) Aspergillus niger contig An12c002... 47 0.002
(P0C7P1) RecName: Full=RNA-binding motif protein, Y chromosome, ... 47 0.002
BC070298_1(BC070298|pid:none) Homo sapiens RNA binding motif pro... 47 0.002
(Q15415) RecName: Full=RNA-binding motif protein, Y chromosome, ... 47 0.002
AC136449_14(AC136449|pid:none) Medicago truncatula clone mth2-11... 47 0.002
(A6NDE4) RecName: Full=RNA-binding motif protein, Y chromosome, ... 47 0.002
A44275_1(A44275|pid:none) Sequence 3 from Patent WO9511300. &B4... 47 0.002
(A6NEQ0) RecName: Full=RNA-binding motif protein, Y chromosome, ... 47 0.002
AC148528_1(AC148528|pid:none) Medicago truncatula clone mth2-53h... 47 0.002
BC144577_1(BC144577|pid:none) Homo sapiens RNA binding motif pro... 47 0.002
BC144422_1(BC144422|pid:none) Homo sapiens cDNA clone MGC:177960... 47 0.002
AY995201_1(AY995201|pid:none) Pan troglodytes RBMY1 mRNA, partia... 47 0.002
(Q6PFR5) RecName: Full=Transformer-2 protein homolog alpha; AltN... 47 0.002
AC159455_35(AC159455|pid:none) Trypanosoma brucei chromosome 5 c... 47 0.002
BC161978_1(BC161978|pid:none) Rattus norvegicus transformer-2 al... 47 0.002
AB085214_1(AB085214|pid:none) Hyla japonica cirp-beta mRNA for c... 47 0.002
DQ972958_1(DQ972958|pid:none) Sus scrofa TRA2A mRNA, complete cds. 47 0.002
AB173584_1(AB173584|pid:none) Macaca fascicularis brain cDNA clo... 47 0.002
AM910996_258(AM910996|pid:none) Plasmodium knowlesi strain H chr... 47 0.002
AB159268_1(AB159268|pid:none) Oryzias latipes Tra2a2 mRNA for tr... 47 0.002
EU797611_1(EU797611|pid:none) Ovis aries TRA2A mRNA, complete cds. 47 0.002
CP000838_71(CP000838|pid:none) Acaryochloris marina MBIC11017 pl... 46 0.003
BT062575_1(BT062575|pid:none) Zea mays full-length cDNA clone ZM... 46 0.003
AM445871_1(AM445871|pid:none) Vitis vinifera contig VV78X219207.... 46 0.003
CR380958_544(CR380958|pid:none) Candida glabrata strain CBS138 c... 46 0.004
AC137701_16(AC137701|pid:none) Medicago truncatula clone mth2-35... 46 0.004
AC006954_11(AC006954|pid:none) Arabidopsis thaliana chromosome 2... 46 0.004
CP000563_4104(CP000563|pid:none) Shewanella baltica OS155, compl... 46 0.004
BC074599_1(BC074599|pid:none) Xenopus tropicalis transformer-2 a... 46 0.004
BC073641_1(BC073641|pid:none) Xenopus laevis MGC82977 protein, m... 46 0.004
AB304402_1(AB304402|pid:none) Sus scrofa CBF-A mRNA for CArG-bin... 46 0.004
CP000581_580(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 45 0.005
BX649404_2(BX649404|pid:none) Zebrafish DNA sequence from clone ... 45 0.005
CR382124_489(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 45 0.005
AK005907_1(AK005907|pid:none) Mus musculus adult male testis cDN... 45 0.005
EU492544_1(EU492544|pid:none) Penaeus monodon transformer-2 prot... 45 0.005
BT004860_1(BT004860|pid:none) Drosophila melanogaster RE27227 fu... 45 0.005
(Q54WM4) RecName: Full=Eukaryotic translation initiation factor ... 45 0.005
EU492545_1(EU492545|pid:none) Penaeus monodon variant transforme... 45 0.005
(Q5ARI5) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 45 0.005
AE014297_2648(AE014297|pid:none) Drosophila melanogaster chromos... 45 0.005
BX649404_1(BX649404|pid:none) Zebrafish DNA sequence from clone ... 45 0.005
AF153444_1(AF153444|pid:none) Felis catus hnRNP A/B related prot... 45 0.005
AB079122_1(AB079122|pid:none) Oryzias latipes Tra2b mRNA for tra... 45 0.006
CR954212_227(CR954212|pid:none) Ostreococcus tauri strain OTTH05... 45 0.006
AB159275_1(AB159275|pid:none) Oryzias latipes Tra2b6 mRNA for tr... 45 0.006
BA000039_2254(BA000039|pid:none) Thermosynechococcus elongatus B... 45 0.006
CU633447_37(CU633447|pid:none) Podospora anserina genomic DNA ch... 45 0.006
CP001032_940(CP001032|pid:none) Opitutus terrae PB90-1, complete... 45 0.006
AB159271_1(AB159271|pid:none) Oryzias latipes Tra2b2 mRNA for tr... 45 0.006
X76245_1(X76245|pid:none) S.cerevisiae NOP77 gene for essential ... 45 0.006
AE014297_3780(AE014297|pid:none) Drosophila melanogaster chromos... 45 0.006
DQ497201_1(DQ497201|pid:none) Bombyx mori cleavage stimulation f... 45 0.006
AB159273_1(AB159273|pid:none) Oryzias latipes Tra2b4 mRNA for tr... 45 0.006
X06814_1(X06814|pid:none) Human mRNA for hU1-70K small nuclear R... 45 0.006
(P37838) RecName: Full=Nucleolar protein 4; AltName: Full=Nucleo... 45 0.006
FJ527019_1(FJ527019|pid:none) Macaca mulatta truncated RNA bindi... 45 0.008
S56750(S56750)single stranded D box binding factor 2 - chicken 45 0.008
CP000592_235(CP000592|pid:none) Ostreococcus lucimarinus CCE9901... 45 0.008
S56751(S56751) single stranded D box binding factor 1 - chicken ... 45 0.008
CP000503_3631(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 45 0.008
EU087580_1(EU087580|pid:none) Ilyanassa obsoleta RNA-binding 1-l... 45 0.008
BC086795_1(BC086795|pid:none) Mus musculus splicing factor, argi... 44 0.011
(P62995) RecName: Full=Transformer-2 protein homolog beta; AltNa... 44 0.011
(Q8T6B9) RecName: Full=Poly(U)-binding-splicing factor half pint... 44 0.011
AK297686_1(AK297686|pid:none) Homo sapiens cDNA FLJ60713 complet... 44 0.011
FN357314_32(FN357314|pid:none) Schistosoma mansoni genome sequen... 44 0.011
AK223425_1(AK223425|pid:none) Homo sapiens mRNA for heterogeneou... 44 0.011
AK097657_1(AK097657|pid:none) Homo sapiens cDNA FLJ40338 fis, cl... 44 0.011
AF479079_1(AF479079|pid:none) Drosophila melanogaster half pint ... 44 0.011
AC108906_21(AC108906|pid:none) Oryza sativa chromosome 3 BAC OSJ... 44 0.011
AE014296_277(AE014296|pid:none) Drosophila melanogaster chromoso... 44 0.011
AJ719598_1(AJ719598|pid:none) Gallus gallus mRNA for hypothetica... 44 0.011
AF057159_3(AF057159|pid:none) Homo sapiens transformer-2-beta (S... 44 0.011
AC093018_3(AC093018|pid:none) Oryza sativa chromosome 3 BAC OSJN... 44 0.011
AB063020_1(AB063020|pid:none) Macaca fascicularis brain cDNA clo... 44 0.011
AE016820_121(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 44 0.011
AK067130_1(AK067130|pid:none) Oryza sativa Japonica Group cDNA c... 44 0.011
CR940352_492(CR940352|pid:none) Theileria annulata strain Ankara... 44 0.011
AB299206_1(AB299206|pid:none) Rana rugosa Tra2 mRNA for transfor... 44 0.011
AB171721_1(AB171721|pid:none) Macaca fascicularis brain cDNA clo... 44 0.011
AB463727_1(AB463727|pid:none) Synthetic construct DNA, clone: pF... 44 0.011
(Q4IE79) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 44 0.014
AF216753_1(AF216753|pid:none) Rattus norvegicus CArG-binding fac... 44 0.014
CU928169_478(CU928169|pid:none) Kluyveromyces thermotolerans str... 44 0.014
AF108653_1(AF108653|pid:none) Rattus norvegicus nucleic acid bin... 44 0.014
CP001344_909(CP001344|pid:none) Cyanothece sp. PCC 7425, complet... 44 0.014
CP000447_127(CP000447|pid:none) Shewanella frigidimarina NCIMB 4... 44 0.014
CR858515_1(CR858515|pid:none) Pongo abelii mRNA; cDNA DKFZp468L1... 44 0.014
DQ120650_1(DQ120650|pid:none) Homo sapiens RBM1 gene, partial cds. 44 0.014
AB462999_1(AB462999|pid:none) Synthetic construct DNA, clone: pF... 44 0.014
AK076132_1(AK076132|pid:none) Mus musculus 10, 11 days embryo wh... 44 0.014
CP000500_253(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 44 0.014
AL645602_4(AL645602|pid:none) Mouse DNA sequence from clone RP23... 44 0.014
AL645602_3(AL645602|pid:none) Mouse DNA sequence from clone RP23... 44 0.014
AJ238854_1(AJ238854|pid:none) Rattus norvegicus mRNA for type A/... 44 0.014
(Q99020) RecName: Full=Heterogeneous nuclear ribonucleoprotein A... 44 0.014
DQ158856_1(DQ158856|pid:none) Bigelowiella natans nucleomorph ch... 44 0.014
AL591125_5(AL591125|pid:none) Mouse DNA sequence from clone RP23... 44 0.014
(Q2U256) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 44 0.014
DQ120651_1(DQ120651|pid:none) Pan troglodytes RBM1 gene, partial... 44 0.014
DQ120655_1(DQ120655|pid:none) Cercopithecus sabaeus RBM1 gene, p... 44 0.014
BC066454_1(BC066454|pid:none) Danio rerio heterogeneous nuclear ... 44 0.018
AJ717407_1(AJ717407|pid:none) Callithrix jacchus partial mRNA fo... 44 0.018
AE017354_250(AE017354|pid:none) Legionella pneumophila subsp. pn... 44 0.018
AF034741_1(AF034741|pid:none) Macropus eugenii heterogeneous nuc... 44 0.018
BC065953_1(BC065953|pid:none) Danio rerio RNA binding protein S1... 44 0.018
BC057251_1(BC057251|pid:none) Danio rerio RNA binding protein S1... 44 0.018
CR628336_321(CR628336|pid:none) Legionella pneumophila str. Pari... 44 0.018
AC159448_29(AC159448|pid:none) Trypanosoma brucei chromosome 8 c... 44 0.018
CP000675_323(CP000675|pid:none) Legionella pneumophila str. Corb... 44 0.018
BC077018_1(BC077018|pid:none) Xenopus tropicalis splicing factor... 44 0.018
(Q9ZQA8) RecName: Full=Probable polyadenylate-binding protein At... 44 0.018
AM920436_1196(AM920436|pid:none) Penicillium chrysogenum Wiscons... 44 0.018
X85111_1(X85111|pid:none) X.laevis mRNA for XEL-1. 44 0.018
CP000806_3097(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 44 0.018
AY360385_9(AY360385|pid:none) Oryza sativa (japonica cultivar-gr... 44 0.018
AJ746579_1(AJ746579|pid:none) Microcebus murinus partial mRNA fo... 44 0.018
AJ717408_1(AJ717408|pid:none) Saimiri sciureus partial mRNA for ... 44 0.018
BX842646_292(BX842646|pid:none) Bdellovibrio bacteriovorus compl... 42 0.021
CP000851_166(CP000851|pid:none) Shewanella pealeana ATCC 700345,... 43 0.024
BC049051_1(BC049051|pid:none) Danio rerio splicing factor, argin... 43 0.024
AB168869_1(AB168869|pid:none) Macaca fascicularis testis cDNA, c... 43 0.024
AJ237847_1(AJ237847|pid:none) Mus musculus mRNA for heterogeneou... 43 0.024
BX323559_6(BX323559|pid:none) Zebrafish DNA sequence from clone ... 43 0.024
FJ623266_1(FJ623266|pid:none) Bos taurus boule mRNA, complete cds. 43 0.024
AF240679_1(AF240679|pid:none) Cucumis sativus poly(A)-binding pr... 43 0.024
S41766(S41766;S43202)heterogeneous nuclear ribonucleoprotein G -... 43 0.024
AJ237846_1(AJ237846|pid:none) Mus musculus mRNA for heterogeneou... 43 0.024
(A5A6M3) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 43 0.024
AM295005_1(AM295005|pid:none) Homo sapiens mRNA for boll protein. 43 0.024
AJ717405_1(AJ717405|pid:none) Pan paniscus partial mRNA for BOUL... 43 0.024
AB171138_1(AB171138|pid:none) Macaca fascicularis brain cDNA clo... 43 0.024
Z23064_1(Z23064|pid:none) H.sapiens mRNA gene for hnRNP G protein. 43 0.024
BC066681_1(BC066681|pid:none) Danio rerio zgc:77052, mRNA (cDNA ... 43 0.024
AK093453_1(AK093453|pid:none) Homo sapiens cDNA FLJ36134 fis, cl... 43 0.024
AY197342_1(AY197342|pid:none) Paralichthys olivaceus splicing fa... 43 0.024
(Q6IQE0) RecName: Full=Poly(U)-binding-splicing factor PUF60-B; ... 43 0.024
AB074454_1(AB074454|pid:none) Macaca fascicularis testis cDNA cl... 43 0.024
BX323559_5(BX323559|pid:none) Zebrafish DNA sequence from clone ... 43 0.024
BT065117_1(BT065117|pid:none) Zea mays full-length cDNA clone ZM... 43 0.024
(Q8N9W6) RecName: Full=Protein boule-like; &AC011997_1(AC011997... 43 0.024
EU965056_1(EU965056|pid:none) Zea mays clone 283482 splicing fac... 43 0.031
EU959768_1(EU959768|pid:none) Zea mays clone 219906 splicing fac... 43 0.031
BT044636_1(BT044636|pid:none) Salmo salar clone ssal-rgf-001-209... 43 0.031
(P04147) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 43 0.031
BT077745_1(BT077745|pid:none) Lepeophtheirus salmonis clone lsal... 43 0.031
CP000444_175(CP000444|pid:none) Shewanella sp. MR-7, complete ge... 43 0.031
AK304868_1(AK304868|pid:none) Homo sapiens cDNA FLJ59107 complet... 43 0.031
AL732567_9(AL732567|pid:none) Zebrafish DNA sequence from clone ... 43 0.031
AY398433_1(AY398433|pid:none) Danio rerio clone RK138A3D02 splic... 43 0.031
DQ100253_1(DQ100253|pid:none) Bactrocera oleae transformer-2 mal... 43 0.031
AL844508_208(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 43 0.031
CU062631_4(CU062631|pid:none) Zebrafish DNA sequence from clone ... 43 0.031
DQ126684_1(DQ126684|pid:none) Gallus gallus aggrecan promoter bi... 42 0.041
AM460508_2(AM460508|pid:none) Vitis vinifera contig VV78X182947.... 42 0.041
BT045504_1(BT045504|pid:none) Salmo salar clone ssal-rgf-523-155... 42 0.041
AF190655_1(AF190655|pid:none) Nicotiana tabacum poly(A)-binding ... 42 0.041
CR857074_1(CR857074|pid:none) Pongo abelii mRNA; cDNA DKFZp468L0... 42 0.041
AJ388517_1(AJ388517|pid:none) Canis familiaris mRNA for partial ... 42 0.041
BC071467_1(BC071467|pid:none) Danio rerio poly-U binding splicin... 42 0.041
(Q9UHX1) RecName: Full=Poly(U)-binding-splicing factor PUF60; Al... 42 0.041
AK152411_1(AK152411|pid:none) Mus musculus bone marrow macrophag... 42 0.041
BC011265_1(BC011265|pid:none) Homo sapiens poly-U binding splici... 42 0.041
Z81080_2(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 42 0.041
BC009734_1(BC009734|pid:none) Homo sapiens poly-U binding splici... 42 0.041
DQ215543_1(DQ215543|pid:none) Taeniopygia guttata clone 0058P006... 42 0.041
(Q14011) RecName: Full=Cold-inducible RNA-binding protein; AltNa... 42 0.041
AJ719636_1(AJ719636|pid:none) Gallus gallus mRNA for hypothetica... 42 0.041
AF165892_1(AF165892|pid:none) Rattus norvegicus RNA-binding prot... 42 0.041
AB171494_1(AB171494|pid:none) Macaca fascicularis brain cDNA clo... 42 0.041
BC102773_1(BC102773|pid:none) Bos taurus cold inducible RNA bind... 42 0.041
BC158521_1(BC158521|pid:none) Xenopus tropicalis hypothetical pr... 42 0.041
AB306286_1(AB306286|pid:none) Alligator mississippiensis CIRBP m... 42 0.041
AY394938_1(AY394938|pid:none) Danio rerio clone RK045A2G06 RNA b... 42 0.041
AY119171_1(AY119171|pid:none) Drosophila melanogaster RH49436 fu... 42 0.041
AK009895_1(AK009895|pid:none) Mus musculus adult male tongue cDN... 42 0.041
BT048159_1(BT048159|pid:none) Salmo salar clone ssal-plnb-025-05... 42 0.041
AL772146_2(AL772146|pid:none) Zebrafish DNA sequence from clone ... 42 0.041
BC119437_1(BC119437|pid:none) Mus musculus poly-U binding splici... 42 0.041
AM468150_4(AM468150|pid:none) Vitis vinifera contig VV78X086105.... 42 0.041
DQ215533_1(DQ215533|pid:none) Taeniopygia guttata clone 0058P002... 42 0.041
AF217197_1(AF217197|pid:none) Homo sapiens FBP-interacting repre... 42 0.041
AB170797_1(AB170797|pid:none) Macaca fascicularis brain cDNA clo... 42 0.041
(Q5R469) RecName: Full=Poly(U)-binding-splicing factor PUF60; Al... 42 0.041
AE014297_3962(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.041
AK151526_1(AK151526|pid:none) Mus musculus bone marrow macrophag... 42 0.041
CP000931_4116(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 42 0.041
AK304470_1(AK304470|pid:none) Homo sapiens cDNA FLJ52850 complet... 42 0.041
DQ215539_1(DQ215539|pid:none) Taeniopygia guttata clone 0063P002... 42 0.041
AE014297_3966(AE014297|pid:none) Drosophila melanogaster chromos... 42 0.041
(Q2HJG2) RecName: Full=Poly(U)-binding-splicing factor PUF60; Al... 42 0.041
U51586_1(U51586|pid:none) Human siah binding protein 1 (SiahBP1)... 42 0.041
AX884883_1(AX884883|pid:none) Sequence 746 from Patent EP1033401. 42 0.041
FJ629582_1(FJ629582|pid:none) Synthetic construct Drosophila mel... 42 0.041
BC084798_1(BC084798|pid:none) Xenopus laevis hypothetical LOC495... 42 0.041
T22008(T22008;T26011)hypothetical protein F39H2.2 - Caenorhabdit... 42 0.041
Z81080_1(Z81080|pid:none) Caenorhabditis elegans Cosmid F39H2, c... 42 0.041
AB441821_1(AB441821|pid:none) Tokudaia osimensis RBMX gene for R... 42 0.041
U28944_7(U28944|pid:none) Caenorhabditis elegans cosmid C18A3, c... 42 0.053
EF148426_1(EF148426|pid:none) Populus trichocarpa x Populus delt... 42 0.053
(P84586) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 42 0.053
AJ717349_1(AJ717349|pid:none) Danio rerio mRNA for RNA binding m... 42 0.053
(P60824) RecName: Full=Cold-inducible RNA-binding protein; AltNa... 42 0.053
(P08199) RecName: Full=Nucleolin; AltName: Full=Protein C23; 42 0.053
T15542(T15542)hypothetical protein C18A3.5 - Caenorhabditis eleg... 42 0.053
BC056275_1(BC056275|pid:none) Danio rerio zgc:65772, mRNA (cDNA ... 42 0.053
A27441(A27441;A24808;A24070)nucleolin - Chinese hamster 42 0.053
U28944_4(U28944|pid:none) Caenorhabditis elegans cosmid C18A3, c... 42 0.053
CR857338_1(CR857338|pid:none) Pongo abelii mRNA; cDNA DKFZp469E1... 42 0.069
BC046661_1(BC046661|pid:none) Xenopus laevis splicing factor, ar... 42 0.069
EU437408_1(EU437408|pid:none) Ceratitis capitata transformer 2 (... 42 0.069
AK128423_1(AK128423|pid:none) Homo sapiens cDNA FLJ46566 fis, cl... 42 0.069
AB362390_1(AB362390|pid:none) Dugesia japonica DjmlgA mRNA for m... 42 0.069
AX886322_1(AX886322|pid:none) Sequence 2185 from Patent EP1033401. 42 0.069
BT080250_1(BT080250|pid:none) Caligus clemensi clone ccle-evs-50... 42 0.069
BT076436_1(BT076436|pid:none) Caligus rogercresseyi clone crog-e... 42 0.069
(P42731) RecName: Full=Polyadenylate-binding protein 2; ... 42 0.069
BT055613_1(BT055613|pid:none) Zea mays full-length cDNA clone ZM... 42 0.069
CP000472_202(CP000472|pid:none) Shewanella piezotolerans WP3, co... 42 0.069
AE017342_382(AE017342|pid:none) Cryptococcus neoformans var. neo... 42 0.069
BT075762_1(BT075762|pid:none) Caligus rogercresseyi clone crog-e... 42 0.069
AB170452_1(AB170452|pid:none) Macaca fascicularis brain cDNA clo... 42 0.069
EU972135_1(EU972135|pid:none) Zea mays clone 375808 splicing fac... 42 0.069
EU968475_1(EU968475|pid:none) Zea mays clone 321216 unknown mRNA. 41 0.091
AM463653_3(AM463653|pid:none) Vitis vinifera contig VV78X030354.... 41 0.091
AY633610_1(AY633610|pid:none) Homo sapiens aging-associated gene... 41 0.091
(O02008) RecName: Full=Transformer-2 sex-determining protein; &... 41 0.091
BT070075_1(BT070075|pid:none) Zea mays full-length cDNA clone ZM... 41 0.091
(O35479) RecName: Full=Heterogeneous nuclear ribonucleoprotein G... 41 0.091
(Q9Y4C8) RecName: Full=Probable RNA-binding protein 19; AltName:... 41 0.091
AK291239_1(AK291239|pid:none) Homo sapiens cDNA FLJ76290 complet... 41 0.091
(O74400) RecName: Full=Uncharacterized RNA-binding protein C4F6.... 41 0.091
U72682_3(U72682|pid:none) Drosophila virilis alternatively splic... 41 0.091
BC127338_1(BC127338|pid:none) Xenopus tropicalis ELAV (embryonic... 41 0.091
(Q01085) RecName: Full=Nucleolysin TIAR; AltName: Full=TIA-1-rel... 41 0.091
BT065814_1(BT065814|pid:none) Zea mays full-length cDNA clone ZM... 41 0.091
DQ215534_1(DQ215534|pid:none) Taeniopygia guttata clone 0063P001... 41 0.091
U79565_1(U79565|pid:none) Macropus eugenii RBM1 mRNA, complete c... 41 0.091
AM447494_2(AM447494|pid:none) Vitis vinifera contig VV78X024983.... 41 0.091
(P0C196) RecName: Full=Peptidyl-prolyl cis-trans isomerase-like ... 41 0.091
AK291444_1(AK291444|pid:none) Homo sapiens cDNA FLJ77989 complet... 41 0.091
AP003800_19(AP003800|pid:none) Oryza sativa Japonica Group genom... 41 0.091
AB014582_1(AB014582|pid:none) Homo sapiens mRNA for KIAA0682 pro... 41 0.091
AK102518_1(AK102518|pid:none) Oryza sativa Japonica Group cDNA c... 41 0.12
BC084231_1(BC084231|pid:none) Xenopus laevis hypothetical LOC495... 41 0.12
AC140027_23(AC140027|pid:none) Medicago truncatula clone mth2-5m... 41 0.12
BC085751_1(BC085751|pid:none) Rattus norvegicus nucleolin, mRNA ... 41 0.12
CP001344_1126(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 41 0.12
FJ817497_1(FJ817497|pid:none) Rattus norvegicus strain W nucleol... 41 0.12
BC087677_1(BC087677|pid:none) Rattus norvegicus RNA binding moti... 41 0.12
JH0148(JH0148;A24088;I63130)nucleolin - rat 41 0.12
EU962966_1(EU962966|pid:none) Zea mays clone 246956 splicing fac... 41 0.12
(O89086) RecName: Full=Putative RNA-binding protein 3; AltName: ... 41 0.12
CU928171_453(CU928171|pid:none) Kluyveromyces thermotolerans str... 41 0.12
BC046695_1(BC046695|pid:none) Xenopus laevis similar to FUS inte... 41 0.12
AC2391(AC2391) RNA-binding protein [imported] - Nostoc sp. (stra... 41 0.12
FN317170_1(FN317170|pid:none) Schistosoma japonicum isolate Anhu... 41 0.12
BT060477_1(BT060477|pid:none) Zea mays full-length cDNA clone ZM... 41 0.12
(P13383) RecName: Full=Nucleolin; AltName: Full=Protein C23; &M... 41 0.12
FN357468_3(FN357468|pid:none) Schistosoma mansoni genome sequenc... 41 0.12
AL670464_3(AL670464|pid:none) Mouse DNA sequence from clone RP23... 41 0.12
AK149632_1(AK149632|pid:none) Mus musculus bone marrow macrophag... 41 0.12
BT076979_1(BT076979|pid:none) Caligus rogercresseyi clone crog-e... 41 0.12
AB025351_1(AB025351|pid:none) Rana catesbeiana mRNA for BFCIRP, ... 41 0.12
AK063879_1(AK063879|pid:none) Oryza sativa Japonica Group cDNA c... 41 0.12
AL583843_2(AL583843|pid:none) Human DNA sequence from clone RP11... 40 0.15
(Q44556) RecName: Full=Putative RNA-binding protein rbpD; &AG23... 40 0.15
EU963748_1(EU963748|pid:none) Zea mays clone 272341 arginine/ser... 40 0.15
BC106519_1(BC106519|pid:none) Xenopus laevis hypothetical protei... 40 0.15
AE013599_3297(AE013599|pid:none) Drosophila melanogaster chromos... 40 0.15
BC118691_1(BC118691|pid:none) Xenopus tropicalis ribonucleic aci... 40 0.15
(P26378) RecName: Full=ELAV-like protein 4; AltName: Full=Parane... 40 0.15
AE014297_1235(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15
AE014297_2975(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15
AY626066_4(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15
AL671915_5(AL671915|pid:none) Mouse DNA sequence from clone RP23... 40 0.15
AE014297_2968(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15
(Q5XG24) RecName: Full=RNA-binding protein with serine-rich doma... 40 0.15
AL583843_1(AL583843|pid:none) Human DNA sequence from clone RP11... 40 0.15
BC055501_1(BC055501|pid:none) Danio rerio TIA1 cytotoxic granule... 40 0.15
(Q5RDA3) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 40 0.15
BC126543_1(BC126543|pid:none) Bos taurus cleavage stimulation fa... 40 0.15
FN316499_1(FN316499|pid:none) Schistosoma japonicum isolate Anhu... 40 0.15
AY626066_5(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15
(Q8HXM1) RecName: Full=Cleavage stimulation factor 64 kDa subuni... 40 0.15
AY626066_1(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15
AY626066_6(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15
AC140068_26(AC140068|pid:none) Medicago truncatula clone mth2-15... 40 0.15
EU616680_1(EU616680|pid:none) Mus musculus betaCstF-64 variant 3... 40 0.15
AY113652_1(AY113652|pid:none) Drosophila melanogaster SD14970 fu... 40 0.15
AL136900_1(AL136900|pid:none) Homo sapiens mRNA; cDNA DKFZp434M1... 40 0.15
EU962006_1(EU962006|pid:none) Zea mays clone 239583 unknown mRNA. 40 0.15
BT003653_1(BT003653|pid:none) Drosophila melanogaster AT01548 fu... 40 0.15
(Q8BL97) RecName: Full=Splicing factor, arginine/serine-rich 7; ... 40 0.15
EF083285_1(EF083285|pid:none) Picea sitchensis clone WS0282_I21 ... 40 0.15
AE014297_2974(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15
EU616682_1(EU616682|pid:none) Mus musculus betaCstF-64 variant 1... 40 0.15
AE014297_2972(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15
AL583843_3(AL583843|pid:none) Human DNA sequence from clone RP11... 40 0.15
AJ719664_1(AJ719664|pid:none) Gallus gallus mRNA for hypothetica... 40 0.15
BC097250_1(BC097250|pid:none) Danio rerio splicing factor, argin... 40 0.15
BC033135_1(BC033135|pid:none) Homo sapiens, Similar to cleavage ... 40 0.15
BC133851_1(BC133851|pid:none) Danio rerio splicing factor, argin... 40 0.15
AK032817_1(AK032817|pid:none) Mus musculus 12 days embryo male w... 40 0.15
AY626066_2(AY626066|pid:none) Bombyx mori transformer-2 protein ... 40 0.15
AY069521_1(AY069521|pid:none) Drosophila melanogaster LD23810 fu... 40 0.15
DQ200389_1(DQ200389|pid:none) Solanum tuberosum clone 066H10 unk... 40 0.15
AE014297_2973(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.15
AE014296_1805(AE014296|pid:none) Drosophila melanogaster chromos... 40 0.15
BC036071_1(BC036071|pid:none) Homo sapiens ELAV (embryonic letha... 40 0.15
BC041291_1(BC041291|pid:none) Xenopus laevis cleavage stimulatio... 40 0.15
AK166681_1(AK166681|pid:none) Mus musculus blastocyst blastocyst... 40 0.20
AL590443_71(AL590443|pid:none) chromosome III of strain GB-M1 of... 40 0.20
AL451015_4(AL451015|pid:none) Neurospora crassa DNA linkage grou... 40 0.20
AF042383_1(AF042383|pid:none) Mus musculus TLS-associated protei... 40 0.20
AK029128_1(AK029128|pid:none) Mus musculus 10 days neonate skin ... 40 0.20
AL590609_7(AL590609|pid:none) Human DNA sequence from clone RP11... 40 0.20
DQ630738_1(DQ630738|pid:none) Astatotilapia burtoni heterogeneou... 40 0.20
BC098831_1(BC098831|pid:none) Rattus norvegicus FUS interacting ... 40 0.20
T51304(T51304) splicing factor RSp31 [imported] - Arabidopsis th... 40 0.20
AF419332_1(AF419332|pid:none) Homo sapiens TLS-associated protei... 40 0.20
AK135316_1(AK135316|pid:none) Mus musculus 12 days embryo male w... 40 0.20
AK031606_1(AK031606|pid:none) Mus musculus 13 days embryo male t... 40 0.20
AK134289_1(AK134289|pid:none) Mus musculus 13 days embryo foreli... 40 0.20
(P31209) RecName: Full=Polyadenylate-binding protein, cytoplasmi... 40 0.20
AE014296_3043(AE014296|pid:none) Drosophila melanogaster chromos... 40 0.20
(Q96G09) RecName: Full=FUS-interacting serine-arginine-rich prot... 40 0.20
AB172411_1(AB172411|pid:none) Macaca fascicularis brain cDNA clo... 40 0.20
AM457533_1(AM457533|pid:none) Vitis vinifera contig VV78X002778.... 40 0.20
BC153534_1(BC153534|pid:none) Danio rerio DAZ associated protein... 40 0.20
(Q640A2) RecName: Full=Heterogeneous nuclear ribonucleoprotein D... 40 0.20
AJ719320_1(AJ719320|pid:none) Gallus gallus mRNA for hypothetica... 40 0.20
AP007159_303(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.20
AK296175_1(AK296175|pid:none) Homo sapiens cDNA FLJ58902 complet... 40 0.20
M64603_1(M64603|pid:none) Schizosaccharomyces pombe poly(A)-bind... 40 0.20
AM950286_1(AM950286|pid:none) Chironomus tentans mRNA for SR fam... 40 0.20
(P92964) RecName: Full=Arginine/serine-rich-splicing factor RSP3... 40 0.20
(Q9VVE5) RecName: Full=RNA-binding protein Musashi homolog Rbp6;... 40 0.20
AL590609_8(AL590609|pid:none) Human DNA sequence from clone RP11... 40 0.20
AX886243_1(AX886243|pid:none) Sequence 2106 from Patent EP1033401. 40 0.20
(Q8R3C6) RecName: Full=Probable RNA-binding protein 19; AltName:... 40 0.20
AK222994_1(AK222994|pid:none) Homo sapiens mRNA for FUS interact... 40 0.20
AK169071_1(AK169071|pid:none) Mus musculus 17 days embryo kidney... 40 0.20
AK004657_1(AK004657|pid:none) Mus musculus adult male lung cDNA,... 40 0.20
AK073210_1(AK073210|pid:none) Oryza sativa Japonica Group cDNA c... 40 0.20
BC103100_1(BC103100|pid:none) Bos taurus FUS interacting protein... 40 0.20
BC114331_1(BC114331|pid:none) Danio rerio DAZ associated protein... 40 0.20
AL928954_3(AL928954|pid:none) Zebrafish DNA sequence from clone ... 40 0.26
DQ019626_1(DQ019626|pid:none) Triticum aestivum pre-mRNA process... 40 0.26
BC094189_1(BC094189|pid:none) Xenopus laevis ELAV (embryonic let... 40 0.26
X57483_1(X57483|pid:none) X.laevis variant mRNA (X ABP 12-5) for... 40 0.26
CP000393_1589(CP000393|pid:none) Trichodesmium erythraeum IMS101... 40 0.26
FN316492_1(FN316492|pid:none) Schistosoma japonicum isolate Anhu... 40 0.26
FN323507_1(FN323507|pid:none) Schistosoma japonicum isolate Anhu... 40 0.26
AF064592_1(AF064592|pid:none) Schistosoma japonicum RNA-binding ... 40 0.26
AK086398_1(AK086398|pid:none) Mus musculus 15 days embryo head c... 40 0.26
AE016820_759(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 40 0.26
AF130355_1(AF130355|pid:none) Neurospora crassa Pad-1 (pad-1) ge... 40 0.26
CR382126_408(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 40 0.26
FN392319_128(FN392319|pid:none) Pichia pastoris GS115 chromosome... 40 0.26
CP000606_139(CP000606|pid:none) Shewanella loihica PV-4, complet... 40 0.26
CP001326_401(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 40 0.26
FN323494_1(FN323494|pid:none) Schistosoma japonicum isolate Anhu... 40 0.26
BC170539_1(BC170539|pid:none) Xenopus laevis elav like 1, mRNA (... 40 0.26
A96762(A96762) probable RNA-binding glycine-rich protein T9L24.4... 40 0.26
(Q9JLI8) RecName: Full=Squamous cell carcinoma antigen recognize... 40 0.26
AE014298_1983(AE014298|pid:none) Drosophila melanogaster chromos... 40 0.26
FN367827_6(FN367827|pid:none) Schistosoma mansoni genome sequenc... 40 0.26
FN367827_5(FN367827|pid:none) Schistosoma mansoni genome sequenc... 40 0.26
AY150521_1(AY150521|pid:none) Vitis vinifera putative heterogene... 40 0.26
AY225854_1(AY225854|pid:none) Bos taurus nucleolin (NCL) mRNA, p... 40 0.26
BT070880_1(BT070880|pid:none) Picea sitchensis clone WS02758_A02... 39 0.34
(P29341) RecName: Full=Polyadenylate-binding protein 1; ... 39 0.34
AK298990_1(AK298990|pid:none) Homo sapiens cDNA FLJ59219 complet... 39 0.34
(Q9H361) RecName: Full=Polyadenylate-binding protein 3; ... 39 0.34
(Q4R4J7) RecName: Full=Nucleolin; &AB168220_1(AB168220|pid:none... 39 0.34
(P19338) RecName: Full=Nucleolin; AltName: Full=Protein C23; &A... 39 0.34
DQ443394_1(DQ443394|pid:none) Bombyx mori arginine/serine-rich s... 39 0.34
AK118074_1(AK118074|pid:none) Arabidopsis thaliana At4g02430 mRN... 39 0.34
(Q7ZX83) RecName: Full=Heterogeneous nuclear ribonucleoprotein D... 39 0.34
BC114029_1(BC114029|pid:none) Bos taurus RNA binding motif prote... 39 0.34
CR954201_558(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 39 0.34
BT052550_1(BT052550|pid:none) Medicago truncatula clone MTYFD_FE... 39 0.34
AK127608_1(AK127608|pid:none) Homo sapiens cDNA FLJ45706 fis, cl... 39 0.34
CP000585_410(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 39 0.34
(Q0WMY5) RecName: Full=Pentatricopeptide repeat-containing prote... 39 0.34
CP000828_1947(CP000828|pid:none) Acaryochloris marina MBIC11017,... 39 0.34
AF364077_1(AF364077|pid:none) Pichia angusta putative peptidyl p... 39 0.34
(Q5R8F7) RecName: Full=Polyadenylate-binding protein 1; ... 39 0.34
DQ120640_1(DQ120640|pid:none) Homo sapiens PABP3 gene, partial c... 39 0.34
S52491(S52491) polyadenylate binding protein II - human &Z48501... 39 0.34
AF033587_1(AF033587|pid:none) Arabidopsis thaliana SRZ21 mRNA, c... 39 0.34
AB002330_1(AB002330|pid:none) Human mRNA for KIAA0332 gene, part... 39 0.34
AP005309_10(AP005309|pid:none) Oryza sativa Japonica Group genom... 39 0.34
BT074603_1(BT074603|pid:none) Osmerus mordax clone omor-rgc-514-... 39 0.34
FN323502_1(FN323502|pid:none) Schistosoma japonicum isolate Anhu... 39 0.34
DQ120645_1(DQ120645|pid:none) Cercopithecus sabaeus PABP3 gene, ... 39 0.34
(P11940) RecName: Full=Polyadenylate-binding protein 1; ... 39 0.34
BC103473_1(BC103473|pid:none) Bos taurus RNA binding motif (RNP1... 39 0.34
(Q5R7X2) RecName: Full=U2-associated protein SR140; AltName: Ful... 39 0.34
AL162972_17(AL162972|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.34
AJ719881_1(AJ719881|pid:none) Gallus gallus mRNA for hypothetica... 39 0.34
AK296440_1(AK296440|pid:none) Homo sapiens cDNA FLJ60621 complet... 39 0.34
Z99279_4(Z99279|pid:none) Caenorhabditis elegans YAC Y57G11A, co... 39 0.34
BT074297_1(BT074297|pid:none) Oncorhynchus mykiss clone omyk-evo... 39 0.34
(Q5RF26) RecName: Full=Nucleolin; &CR857335_1(CR857335|pid:none) 39 0.34
(Q9EPH8) RecName: Full=Polyadenylate-binding protein 1; ... 39 0.34
AK089747_1(AK089747|pid:none) Mus musculus activated spleen cDNA... 39 0.34
BC006474_1(BC006474|pid:none) Homo sapiens, clone IMAGE:2820942,... 39 0.34
AF069298_10(AF069298|pid:none) Arabidopsis thaliana BAC T14P8. ... 39 0.34
AF132026_1(AF132026|pid:none) Homo sapiens testis-specific poly(... 39 0.34
CR940353_826(CR940353|pid:none) Theileria annulata strain Ankara... 39 0.34
CT573072_196(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 37 0.36
BX547938_9(BX547938|pid:none) Zebrafish DNA sequence from clone ... 39 0.45
BX547938_12(BX547938|pid:none) Zebrafish DNA sequence from clone... 39 0.45
AE017349_13(AE017349|pid:none) Cryptococcus neoformans var. neof... 39 0.45
(Q15287) RecName: Full=RNA-binding protein with serine-rich doma... 39 0.45
BX547938_7(BX547938|pid:none) Zebrafish DNA sequence from clone ... 39 0.45

>(Q55FQ0) RecName: Full=U1 small nuclear ribonucleoprotein 70 kDa;
Short=U1 snRNP 70 kDa; Short=snRNP70;
Short=U1-70K;
Length = 459

Score = 168 bits (426), Expect(2) = 3e-54
Identities = 81/81 (100%), Positives = 81/81 (100%)
Frame = +1

Query: 307 DPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAF 486
DPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAF
Sbjct: 86 DPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAF 145

Query: 487 IEFERERDMKAAYKQADGMKI 549
IEFERERDMKAAYKQADGMKI
Sbjct: 146 IEFERERDMKAAYKQADGMKI 166

Score = 68.6 bits (166), Expect(2) = 3e-54
Identities = 30/30 (100%), Positives = 30/30 (100%)
Frame = +2

Query: 596 KNWKPRKFGGGLGNTRAGGVDVNQTFSGRE 685
KNWKPRKFGGGLGNTRAGGVDVNQTFSGRE
Sbjct: 182 KNWKPRKFGGGLGNTRAGGVDVNQTFSGRE 211

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 754,468,785
Number of extensions: 9421262
Number of successful extensions: 19674
Number of sequences better than 10.0: 1059
Number of HSP's gapped: 19348
Number of HSP's successfully gapped: 1210
Length of query: 466
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 334
Effective length of database: 618,001,159
Effective search space: 206412387106
Effective search space used: 206412387106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.94 gvh: 0.08 alm: 0.43 top: 0.40 tms: 0.00 mit: 0.36 mip: 0.00
nuc: 0.32 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
8.0 %: mitochondrial
8.0 %: plasma membrane
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for Contig-U08024-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0