Contig-U07707-1
Contig ID Contig-U07707-1
Contig update 2002. 5. 9
Contig sequence
>Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Contig-U07707-1Q.Seq.d
ACTAACACTTTCAACACCCACACATAATATTAACAATAACAAAATATAGA
ATATAGAATATCGCTGTATATACAAATACAACACAAGCATCTATATATAT
ATATATATAAAATAAATTCATTTTGAAGTTTTGTAACAATAGTATAAAAC
AGATAAACAGATAAATAGATAATCTTTTTTTTTTTNCNTNAAAATTTTTT
TTTTTTAAAAN----------ATCACCCGATGAATTAGTTNCTCCCCAAG
TAAAGAANCAAATAATATTTAATATCNCCNCCATTTAATAGTAATTCTTT
AAGAGTATAAATGAAAATNCAAATCAAACNCCAAAATTCACTCATTTAGA
AAATAAAAGTGATACCACCCCCTAATAATAATAATAATAGCGCTAGTAAA
AATAAAAATAAAAGAAATTCATATAATAGTTATAAATCATTTGAAGATGA
AGATTTATTTAGAGAAGGTGGTCAATCAATTAATGGCGCGAGTGATGGTA
GTTCAAGCCCACCAATTAAAATAAAATTACAAGATACACATTATGAATTA
ATTCAAAATGGTAATCAATCAATTAATGAAAATAATAATGGCGGTGGTAA
TGGTAATGGTAATAGTGTTCCAAAATTCTTAAATTTTGAAGAGATTGTAA
ATAACGAAAATAATAATATCATAAAAAATAGTTTAAAAGGAAGTGGTGGT
GGTGGTATTGGTCGTATGGGATTATTATCAACTTCATCAAGTTCATTTGT
AGAAAAGGTTACAGCAAAAGAAAGATTCCGATATTTTTATAAACTTTGTA
ATACATCAAATTAAAACCAGTACTTGGTTAACTTGGGTGAAATTANTTGT
TTTAGTATGTATTATAACTTTATGTTATGTTGGCAATTTTCNAATTTAAA
ATTCAAAGTCATTTATCAACATCATCAAATGATAATATTTACCAAGAAGG
ACATCAATTAATAAATACATCAACCGATGAATTAAGTTCATCACCAAGTA
AAGAAACAAATAATAATTTAATATCACCACCATTTAATAGTAAATTCTTT
AAGAGTATAAATGAAAATACAAATCAAACACCAAAATTCACTCATTTAGA
AAATAAAAGTGATACCACACCTAATAATAATAATAATAGCGCTAGTAAAA
ATAAAAATAAAAGAAATTCATATAATAGTTATAAATCATTTGAAGATGAA
GATTTATTTAGAGAAGGTGGTCAATCAATTAATGGCGCGAGTGATGGTAG
TTCAAGCCCACCAATTAAAATAAAATTACAAGATACACATTATGAATTAA
TTCAAAATGGTAATCAATCAATTAATGAAAATAATAATGGCGGTGGTAAT
GGTAATGGTAATAGTGTTCCAAAATTCTTAAATTTTGAAGAGATTGTAAA
TAACGAAAATAATAATATCATAAAAAATAGTTTAAAAGGAAGTGGTGGTG
GTGGTATTGGTCGTATGGGATTATTATCAACTTCATCAAGTTCATTTGTA
GAAAAGGTTACAGCAAAAGAAAGATTCCGATATTTTATAAACTTTGTAAT
ACATCAAATTAAAACCAGTACTTGGTTAACTTGGGTGAAATTATTTGTTT
TAGTATGTATTATAACTTTATTTATGTTGGCAATTTTCAAATTTAAAATT
CAAAGTCATTTATCTGCTCTTCAAGAATTTGTTGGTAAATTTGGTATTGT
TTTAGGAGGTTTACTTTATGTTGGTATATTTATGTTATTAATTATATTTT
TAATACCAGTTACAATTCCAACAATTATTGGTGGTATGACCTTTGGAATA
GGATTTGGTATATTATTTGTATGGACTGCATCAATTTTAGGTGGAGTAGT
AGCATTTTTCTTGGGTAGATATGTACTTAGAAAAAGAATTTCAAAAAGAA
TTGAAAAGAATAGAAAATTGGTAGCAGTTGATCAAGCGATTGGACAAGAA
GGTTGGAAGATTGTATTATTACTTAGATTAACACCAATTGTGCCAGAGAG
TATTCTAAATTATACATTATCAGTGACCAAAGTAAACTTTTGGCATTATT
TAATTTGCAGTGGCATTGGTATGATACCAGGTTGTTCATTCTTTGTATAT
GTTGGTTCATCTCTTAGAACGTTATCAGATGTTGGTAATGGAGAATCTCC
AATGGAAAAAGGAAAAATTATAATGTATGTTATATCCTGGTGTACTAATG
GTTGTTTCAATCACTTTTATCACTATCATTGTAAAAAGAGCTGTAAATAA
AAAATTAGAAGCCGTATGATCAAAAAGGTTTATTAGCATGAAGAAGAACG
ATTAATGAATGAACAAGATGATTTAATAAGTGGTAATGATTATTTATAAA
ATCAAAA

Gap gap included
Contig length 2347
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5382500
End point 5384085
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 7
Link to clone list U07707
List of clone(s)

est1=AFG886F,1,212
est2=AFG886Z,213,1118
est3=CFE176F,974,1500
est4=CFI204E,1200,2307
est5=SFA284Z,1868,2321
est6=CFE176Z,1981,2309
est7=SSL580Z,2104,2347
Translated Amino Acid sequence
*hfqhphiiltitkyri*niavytnttqasiyiyi*nkfilkfcnnsikqinr*IDNLFF
FXXKFFFFK---

---SPDELVXPQVKXQIIFNIXXI***ffksinenxnqtpkfthlenksdttp******r
**k*k*kkfi**l*ii*r*rfi*rrwsin*wre*w*fkptn*nkitrytl*inskw*sin
**k**wrw*w*w**cskilkf*rdck*rk**yhkk*fkrkwwwwywsygiiinfikficr
kgyskrkipifl*tl*yiklkpvlg*lg*nxlf*yvl*lyvmlaifxfkiqshlstssnd
niyqeghqlintstdelssspsketnnnlisppfnskffksinentnqtpkfthlenksd
ttpnnnnnsasknknkrnsynsyksfededlfreggqsingasdgsssppikiklqdthy
eliqngnqsinennngggngngnsvpkflnfeeivnnennniiknslkgsggggigrmgl
lstssssfvekvtakerfryfinfvihqiktstwltwvklfvlvciitlfmlaifkfkiq
shlsalqefvgkfgivlggllyvgifmlliiflipvtiptiiggmtfgigfgilfvwtas
ilggvvafflgryvlrkriskrieknrklvavdqaigqegwkivlllrltpivpesilny
tlsvtkvnfwhylicsgigmipgcsffvyvgsslrtlsdvgngespmekgkiimyviswc
tngcfnhfyhyhckksck*kirsrmikkvy*heeerlmneqddlisgndyl*nq


Translated Amino Acid sequence (All Frames)
Frame A:
tntfntht*y*q*qnieyrislyiqiqhkhlyiyiykinsf*sfvtiv*nr*tdk*iiff
fxxxnffflk---

---itr*isxspskexnni*yxxhlivil*eyk*kxksnxkihsfrk*k*yhpliiiiia
lvkikikeihiivinhlkmkiylekvvnqlmarvmvvqahqlk*nykihimn*fkmvinq
lmkiimavvmvmvivfqns*ilkrl*itkiiis*kiv*kevvvvvlvvwdyyqlhqvhl*
krlqqkkdsdifinfvihqiktstwltwvklxvlvciitlcyvgnfxi*nsksfiniik*
*ylprrtsinkyinr*ikfitk*rnk**fnitti***il*eyk*kyksntkihsfrk*k*
yht******r**k*k*kkfi**l*ii*r*rfi*rrwsin*wre*w*fkptn*nkitrytl
*inskw*sin**k**wrw*w*w**cskilkf*rdck*rk**yhkk*fkrkwwwwywsygi
iinfikficrkgyskrkipifyklcntsn*nqylvnlgeiicfsmyynfiyvgnfqi*ns
ksficssricw*iwycfrrftlcwyiyvinyifntsynsnnywwydlwnriwyiicmdci
nfrwsssiflg*ict*kknfkkn*ke*kigss*ssdwtrrledciit*intncareyskl
yiisdqskllalfnlqwhwydtrlfilcicwfis*nvircw*wrisngkrknynvcyilv
y*wlfqsllslsl*kel*ikn*kpydqkglla*rrtine*tr*fnkw**lfiksk

Frame B:
ltlstpthninnnki*nieyrciykyntsiyiyiyik*ihfevl*q*yktdkqinr*sff
fxxkifff*x---

---SPDELVXPQVKXQIIFNIXXI***ffksinenxnqtpkfthlenksdttp******r
**k*k*kkfi**l*ii*r*rfi*rrwsin*wre*w*fkptn*nkitrytl*inskw*sin
**k**wrw*w*w**cskilkf*rdck*rk**yhkk*fkrkwwwwywsygiiinfikficr
kgyskrkipifl*tl*yiklkpvlg*lg*nxlf*yvl*lyvmlaifxfkiqshlstssnd
niyqeghqlintstdelssspsketnnnlisppfnskffksinentnqtpkfthlenksd
ttpnnnnnsasknknkrnsynsyksfededlfreggqsingasdgsssppikiklqdthy
eliqngnqsinennngggngngnsvpkflnfeeivnnennniiknslkgsggggigrmgl
lstssssfvekvtakerfryfinfvihqiktstwltwvklfvlvciitlfmlaifkfkiq
shlsalqefvgkfgivlggllyvgifmlliiflipvtiptiiggmtfgigfgilfvwtas
ilggvvafflgryvlrkriskrieknrklvavdqaigqegwkivlllrltpivpesilny
tlsvtkvnfwhylicsgigmipgcsffvyvgsslrtlsdvgngespmekgkiimyviswc
tngcfnhfyhyhckksck*kirsrmikkvy*heeerlmneqddlisgndyl*nq

Frame C:
*hfqhphiiltitkyri*niavytnttqasiyiyi*nkfilkfcnnsikqinr*IDNLFF
FXXKFFFFK---

---hpmn*xlpk*rxk*ylisppfnsnslrv*mkxqikxqnsli*kikvipppnnnnnsa
sknknkrnsynsyksfededlfreggqsingasdgsssppikiklqdthyeliqngnqsi
nennngggngngnsvpkflnfeeivnnennniiknslkgsggggigrmgllstssssfve
kvtakerfryfyklcntsn*nqylvnlgeixcfsmyynfmlcwqfsnlkfkviyqhhqmi
iftkkdin**ihqpmn*vhhqvkkqiii*yhhhlivnslrv*mkiqikhqnsli*kikvi
phliiiiialvkikikeihiivinhlkmkiylekvvnqlmarvmvvqahqlk*nykihim
n*fkmvinqlmkiimavvmvmvivfqns*ilkrl*itkiiis*kiv*kevvvvvlvvwdy
yqlhqvhl*krlqqkkdsdil*tl*yiklkpvlg*lg*nylf*yvl*lylcwqfsnlkfk
viyllfknllvnlvlf*evyfmlvylcy*lyf*yqlqfqqllvv*ple*dlvyylyglhq
f*ve**hfswvdmylekefqkelkrienw*qlikrldkkvgrlyyyld*hqlcqrvf*ii
hyq*pk*tfgii*favalv*yqvvhslymlvhlleryqmlvmenlqwkkekl*cmlypgv
lmvvsitfitiivkravnkkleav*skrfismkknd**mnkmi**vvmiiykik

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U07707-1 (Contig-U07707-1Q)
/CSM_Contig/Contig-U07707-1Q.Seq.d
(2357 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Conti... 2339 0.0
Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U13872-1 (Contig-U13872-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U11936-1 (Contig-U11936-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U05633-1 (Contig-U05633-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U14187-1 (Contig-U14187-1Q) /CSM_Contig/Conti... 40 0.011
Contig-U09732-1 (Contig-U09732-1Q) /CSM_Contig/Conti... 40 0.011
Contig-U08674-1 (Contig-U08674-1Q) /CSM_Contig/Conti... 40 0.011
Contig-U07014-1 (Contig-U07014-1Q) /CSM_Contig/Conti... 40 0.011
Contig-U00536-1 (Contig-U00536-1Q) /CSM_Contig/Conti... 36 0.17

>Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Contig-U07707-1Q.Seq.d
Length = 2357

Score = 2339 bits (1180), Expect = 0.0
Identities = 1180/1180 (100%)
Strand = Plus / Plus


Query: 1178 gttataaatcatttgaagatgaagatttatttagagaaggtggtcaatcaattaatggcg 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 gttataaatcatttgaagatgaagatttatttagagaaggtggtcaatcaattaatggcg 1237


Query: 1238 cgagtgatggtagttcaagcccaccaattaaaataaaattacaagatacacattatgaat 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 cgagtgatggtagttcaagcccaccaattaaaataaaattacaagatacacattatgaat 1297


Query: 1298 taattcaaaatggtaatcaatcaattaatgaaaataataatggcggtggtaatggtaatg 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 taattcaaaatggtaatcaatcaattaatgaaaataataatggcggtggtaatggtaatg 1357


Query: 1358 gtaatagtgttccaaaattcttaaattttgaagagattgtaaataacgaaaataataata 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 gtaatagtgttccaaaattcttaaattttgaagagattgtaaataacgaaaataataata 1417


Query: 1418 tcataaaaaatagtttaaaaggaagtggtggtggtggtattggtcgtatgggattattat 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 tcataaaaaatagtttaaaaggaagtggtggtggtggtattggtcgtatgggattattat 1477


Query: 1478 caacttcatcaagttcatttgtagaaaaggttacagcaaaagaaagattccgatatttta 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1478 caacttcatcaagttcatttgtagaaaaggttacagcaaaagaaagattccgatatttta 1537


Query: 1538 taaactttgtaatacatcaaattaaaaccagtacttggttaacttgggtgaaattatttg 1597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1538 taaactttgtaatacatcaaattaaaaccagtacttggttaacttgggtgaaattatttg 1597


Query: 1598 ttttagtatgtattataactttatttatgttggcaattttcaaatttaaaattcaaagtc 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1598 ttttagtatgtattataactttatttatgttggcaattttcaaatttaaaattcaaagtc 1657


Query: 1658 atttatctgctcttcaagaatttgttggtaaatttggtattgttttaggaggtttacttt 1717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1658 atttatctgctcttcaagaatttgttggtaaatttggtattgttttaggaggtttacttt 1717


Query: 1718 atgttggtatatttatgttattaattatatttttaataccagttacaattccaacaatta 1777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1718 atgttggtatatttatgttattaattatatttttaataccagttacaattccaacaatta 1777


Query: 1778 ttggtggtatgacctttggaataggatttggtatattatttgtatggactgcatcaattt 1837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1778 ttggtggtatgacctttggaataggatttggtatattatttgtatggactgcatcaattt 1837


Query: 1838 taggtggagtagtagcatttttcttgggtagatatgtacttagaaaaagaatttcaaaaa 1897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1838 taggtggagtagtagcatttttcttgggtagatatgtacttagaaaaagaatttcaaaaa 1897


Query: 1898 gaattgaaaagaatagaaaattggtagcagttgatcaagcgattggacaagaaggttgga 1957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 gaattgaaaagaatagaaaattggtagcagttgatcaagcgattggacaagaaggttgga 1957


Query: 1958 agattgtattattacttagattaacaccaattgtgccagagagtattctaaattatacat 2017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 agattgtattattacttagattaacaccaattgtgccagagagtattctaaattatacat 2017


Query: 2018 tatcagtgaccaaagtaaacttttggcattatttaatttgcagtggcattggtatgatac 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 tatcagtgaccaaagtaaacttttggcattatttaatttgcagtggcattggtatgatac 2077


Query: 2078 caggttgttcattctttgtatatgttggttcatctcttagaacgttatcagatgttggta 2137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 caggttgttcattctttgtatatgttggttcatctcttagaacgttatcagatgttggta 2137


Query: 2138 atggagaatctccaatggaaaaaggaaaaattataatgtatgttatatcctggtgtacta 2197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 atggagaatctccaatggaaaaaggaaaaattataatgtatgttatatcctggtgtacta 2197


Query: 2198 atggttgtttcaatcacttttatcactatcattgtaaaaagagctgtaaataaaaaatta 2257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 atggttgtttcaatcacttttatcactatcattgtaaaaagagctgtaaataaaaaatta 2257


Query: 2258 gaagccgtatgatcaaaaaggtttattagcatgaagaagaacgattaatgaatgaacaag 2317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 gaagccgtatgatcaaaaaggtttattagcatgaagaagaacgattaatgaatgaacaag 2317


Query: 2318 atgatttaataagtggtaatgattatttataaaatcaaaa 2357
||||||||||||||||||||||||||||||||||||||||
Sbjct: 2318 atgatttaataagtggtaatgattatttataaaatcaaaa 2357


Score = 1392 bits (702), Expect = 0.0
Identities = 708/708 (100%)
Strand = Plus / Plus


Query: 414 gaaattcatataatagttataaatcatttgaagatgaagatttatttagagaaggtggtc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gaaattcatataatagttataaatcatttgaagatgaagatttatttagagaaggtggtc 473


Query: 474 aatcaattaatggcgcgagtgatggtagttcaagcccaccaattaaaataaaattacaag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aatcaattaatggcgcgagtgatggtagttcaagcccaccaattaaaataaaattacaag 533


Query: 534 atacacattatgaattaattcaaaatggtaatcaatcaattaatgaaaataataatggcg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 atacacattatgaattaattcaaaatggtaatcaatcaattaatgaaaataataatggcg 593


Query: 594 gtggtaatggtaatggtaatagtgttccaaaattcttaaattttgaagagattgtaaata 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gtggtaatggtaatggtaatagtgttccaaaattcttaaattttgaagagattgtaaata 653


Query: 654 acgaaaataataatatcataaaaaatagtttaaaaggaagtggtggtggtggtattggtc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acgaaaataataatatcataaaaaatagtttaaaaggaagtggtggtggtggtattggtc 713


Query: 714 gtatgggattattatcaacttcatcaagttcatttgtagaaaaggttacagcaaaagaaa 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gtatgggattattatcaacttcatcaagttcatttgtagaaaaggttacagcaaaagaaa 773


Query: 774 gattccgatatttttataaactttgtaatacatcaaattaaaaccagtacttggttaact 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gattccgatatttttataaactttgtaatacatcaaattaaaaccagtacttggttaact 833


Query: 834 tgggtgaaattanttgttttagtatgtattataactttatgttatgttggcaattttcna 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tgggtgaaattanttgttttagtatgtattataactttatgttatgttggcaattttcna 893


Query: 894 atttaaaattcaaagtcatttatcaacatcatcaaatgataatatttaccaagaaggaca 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 atttaaaattcaaagtcatttatcaacatcatcaaatgataatatttaccaagaaggaca 953


Query: 954 tcaattaataaatacatcaaccgatgaattaagttcatcaccaagtaaagaaacaaataa 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 tcaattaataaatacatcaaccgatgaattaagttcatcaccaagtaaagaaacaaataa 1013


Query: 1014 taatttaatatcaccaccatttaatagtaaattctttaagagtataaatgaaaatacaaa 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 taatttaatatcaccaccatttaatagtaaattctttaagagtataaatgaaaatacaaa 1073


Query: 1074 tcaaacaccaaaattcactcatttagaaaataaaagtgataccacacc 1121
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 tcaaacaccaaaattcactcatttagaaaataaaagtgataccacacc 1121


Score = 955 bits (482), Expect = 0.0
Identities = 500/504 (99%), Gaps = 2/504 (0%)
Strand = Plus / Plus


Query: 414 gaaattcatataatagttataaatcatttgaagatgaagatttatttagagaaggtggtc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1163 gaaattcatataatagttataaatcatttgaagatgaagatttatttagagaaggtggtc 1222


Query: 474 aatcaattaatggcgcgagtgatggtagttcaagcccaccaattaaaataaaattacaag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1223 aatcaattaatggcgcgagtgatggtagttcaagcccaccaattaaaataaaattacaag 1282


Query: 534 atacacattatgaattaattcaaaatggtaatcaatcaattaatgaaaataataatggcg 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1283 atacacattatgaattaattcaaaatggtaatcaatcaattaatgaaaataataatggcg 1342


Query: 594 gtggtaatggtaatggtaatagtgttccaaaattcttaaattttgaagagattgtaaata 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1343 gtggtaatggtaatggtaatagtgttccaaaattcttaaattttgaagagattgtaaata 1402


Query: 654 acgaaaataataatatcataaaaaatagtttaaaaggaagtggtggtggtggtattggtc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1403 acgaaaataataatatcataaaaaatagtttaaaaggaagtggtggtggtggtattggtc 1462


Query: 714 gtatgggattattatcaacttcatcaagttcatttgtagaaaaggttacagcaaaagaaa 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 gtatgggattattatcaacttcatcaagttcatttgtagaaaaggttacagcaaaagaaa 1522


Query: 774 gattccgatatttttataaactttgtaatacatcaaattaaaaccagtacttggttaact 833
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 gattccgata-ttttataaactttgtaatacatcaaattaaaaccagtacttggttaact 1581


Query: 834 tgggtgaaattanttgttttagtatgtattataactttatgttatgttggcaattttcna 893
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 1582 tgggtgaaattatttgttttagtatgtattataactttat-ttatgttggcaattttcaa 1640


Query: 894 atttaaaattcaaagtcatttatc 917
||||||||||||||||||||||||
Sbjct: 1641 atttaaaattcaaagtcatttatc 1664


Score = 926 bits (467), Expect = 0.0
Identities = 485/489 (99%), Gaps = 2/489 (0%)
Strand = Plus / Plus


Query: 1178 gttataaatcatttgaagatgaagatttatttagagaaggtggtcaatcaattaatggcg 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gttataaatcatttgaagatgaagatttatttagagaaggtggtcaatcaattaatggcg 488


Query: 1238 cgagtgatggtagttcaagcccaccaattaaaataaaattacaagatacacattatgaat 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cgagtgatggtagttcaagcccaccaattaaaataaaattacaagatacacattatgaat 548


Query: 1298 taattcaaaatggtaatcaatcaattaatgaaaataataatggcggtggtaatggtaatg 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 taattcaaaatggtaatcaatcaattaatgaaaataataatggcggtggtaatggtaatg 608


Query: 1358 gtaatagtgttccaaaattcttaaattttgaagagattgtaaataacgaaaataataata 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gtaatagtgttccaaaattcttaaattttgaagagattgtaaataacgaaaataataata 668


Query: 1418 tcataaaaaatagtttaaaaggaagtggtggtggtggtattggtcgtatgggattattat 1477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcataaaaaatagtttaaaaggaagtggtggtggtggtattggtcgtatgggattattat 728


Query: 1478 caacttcatcaagttcatttgtagaaaaggttacagcaaaagaaagattccgata-tttt 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 729 caacttcatcaagttcatttgtagaaaaggttacagcaaaagaaagattccgatattttt 788


Query: 1537 ataaactttgtaatacatcaaattaaaaccagtacttggttaacttgggtgaaattattt 1596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 789 ataaactttgtaatacatcaaattaaaaccagtacttggttaacttgggtgaaattantt 848


Query: 1597 gttttagtatgtattataactttat-ttatgttggcaattttcaaatttaaaattcaaag 1655
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 849 gttttagtatgtattataactttatgttatgttggcaattttcnaatttaaaattcaaag 908


Query: 1656 tcatttatc 1664
|||||||||
Sbjct: 909 tcatttatc 917


Score = 264 bits (133), Expect = 4e-70
Identities = 151/151 (100%)
Strand = Plus / Plus


Query: 222 atcacccgatgaattagttnctccccaagtaaagaancaaataatatttaatatcnccnc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atcacccgatgaattagttnctccccaagtaaagaancaaataatatttaatatcnccnc 281


Query: 282 catttaatagtaattctttaagagtataaatgaaaatncaaatcaaacnccaaaattcac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 catttaatagtaattctttaagagtataaatgaaaatncaaatcaaacnccaaaattcac 341


Query: 342 tcatttagaaaataaaagtgataccaccccc 372
|||||||||||||||||||||||||||||||
Sbjct: 342 tcatttagaaaataaaagtgataccaccccc 372


Score = 190 bits (96), Expect = 5e-48
Identities = 138/150 (92%), Gaps = 3/150 (2%)
Strand = Plus / Plus


Query: 969 atcaaccgatgaattaagttcatcaccaagtaaagaaacaaataataatttaatatcacc 1028
|||| ||||||||||| ||| || |||||||||||| ||||||||| ||||||||| ||
Sbjct: 222 atcacccgatgaatta-gttnctccccaagtaaagaancaaataata-tttaatatcncc 279


Query: 1029 accatttaatagtaaattctttaagagtataaatgaaaatacaaatcaaacaccaaaatt 1088
|||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 280 nccatttaatagtaa-ttctttaagagtataaatgaaaatncaaatcaaacnccaaaatt 338


Query: 1089 cactcatttagaaaataaaagtgataccac 1118
||||||||||||||||||||||||||||||
Sbjct: 339 cactcatttagaaaataaaagtgataccac 368


Score = 190 bits (96), Expect = 5e-48
Identities = 138/150 (92%), Gaps = 3/150 (2%)
Strand = Plus / Plus


Query: 222 atcacccgatgaatta-gttnctccccaagtaaagaancaaataata-tttaatatcncc 279
|||| ||||||||||| ||| || |||||||||||| ||||||||| ||||||||| ||
Sbjct: 969 atcaaccgatgaattaagttcatcaccaagtaaagaaacaaataataatttaatatcacc 1028


Query: 280 nccatttaatagtaa-ttctttaagagtataaatgaaaatncaaatcaaacnccaaaatt 338
|||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 1029 accatttaatagtaaattctttaagagtataaatgaaaatacaaatcaaacaccaaaatt 1088


Query: 339 cactcatttagaaaataaaagtgataccac 368
||||||||||||||||||||||||||||||
Sbjct: 1089 cactcatttagaaaataaaagtgataccac 1118


Score = 180 bits (91), Expect = 5e-45
Identities = 91/91 (100%)
Strand = Plus / Plus


Query: 1 actaacactttcaacacccacacataatattaacaataacaaaatatagaatatagaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actaacactttcaacacccacacataatattaacaataacaaaatatagaatatagaata 60


Query: 61 tcgctgtatatacaaatacaacacaagcatc 91
|||||||||||||||||||||||||||||||
Sbjct: 61 tcgctgtatatacaaatacaacacaagcatc 91


Score = 129 bits (65), Expect = 2e-29
Identities = 65/65 (100%)
Strand = Plus / Plus


Query: 110 aaataaattcattttgaagttttgtaacaatagtataaaacagataaacagataaataga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aaataaattcattttgaagttttgtaacaatagtataaaacagataaacagataaataga 169


Query: 170 taatc 174
|||||
Sbjct: 170 taatc 174


>Contig-U14822-1 (Contig-U14822-1Q) /CSM_Contig/Contig-U14822-1Q.Seq.d
Length = 1012

Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1344 tggtaatggtaatggtaatagtgtt 1368
||||||||||||| |||||||||||
Sbjct: 538 tggtaatggtaatagtaatagtgtt 562


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 595 tggtaatggtaatggtaatagtgtt 619
||||||||||||| |||||||||||
Sbjct: 538 tggtaatggtaatagtaatagtgtt 562


Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1348 aatggtaatggtaatagt 1365
||||||||||||||||||
Sbjct: 536 aatggtaatggtaatagt 553


Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 599 aatggtaatggtaatagt 616
||||||||||||||||||
Sbjct: 536 aatggtaatggtaatagt 553


>Contig-U13872-1 (Contig-U13872-1Q) /CSM_Contig/Contig-U13872-1Q.Seq.d
Length = 1278

Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 1179 ttataaatcatttgaagatgaagat 1203
||||||||||| |||||||||||||
Sbjct: 245 ttataaatcatatgaagatgaagat 269


Score = 42.1 bits (21), Expect = 0.003
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 430 ttataaatcatttgaagatgaagat 454
||||||||||| |||||||||||||
Sbjct: 245 ttataaatcatatgaagatgaagat 269


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,696
Number of Sequences: 6905
Number of extensions: 63696
Number of successful extensions: 8755
Number of sequences better than 10.0: 327
length of query: 2357
length of database: 5,674,871
effective HSP length: 16
effective length of query: 2341
effective length of database: 5,564,391
effective search space: 13026239331
effective search space used: 13026239331
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.11
Homology vs DNA
Query= Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Contig-U07707-1Q.Seq.d
(2357 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ342633) Dictyostelium discoideum cDNA clone:dda14l22, 3' ... 908 0.0 3
(BJ375003) Dictyostelium discoideum cDNA clone:ddc17g02, 3' ... 531 0.0 6
(BJ361420) Dictyostelium discoideum cDNA clone:ddc17g02, 5' ... 646 0.0 5
(BJ398721) Dictyostelium discoideum cDNA clone:dds1g22, 3' e... 672 0.0 3
(BJ361096) Dictyostelium discoideum cDNA clone:ddc9g19, 5' e... 291 0.0 3
(BJ374678) Dictyostelium discoideum cDNA clone:ddc9g19, 3' e... 391 e-165 2
(AU038871) Dictyostelium discoideum slug cDNA, clone SSL580. 155 e-113 4
(BJ325510) Dictyostelium discoideum cDNA clone:dda14l22, 5' ... 129 7e-29 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 4e-07 22
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 1e-04 22
(AM469265) Vitis vinifera contig VV78X210856.1, whole genome... 38 0.001 4
(EA102645) Sequence 28 from patent US 7195870. 46 0.002 7
(BD428884) Method and nucleic acids for pharmacogenomic meth... 46 0.002 7
(AX348363) Sequence 58 from Patent WO0202806. 46 0.002 7
(AX323550) Sequence 38 from Patent WO0192565. 46 0.002 7
(AX277865) Sequence 28 from Patent WO0177375. 46 0.002 7
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 0.002 19
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 34 0.002 22
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.004 24
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 0.004 16
(AX344507) Sequence 354 from Patent WO0200926. 34 0.005 11
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 34 0.006 15
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 38 0.008 17
(FE768894) CCAG4610.g1 CCAG Petrolisthes cinctipes heart, gi... 40 0.010 2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 32 0.011 15
(FF903457) CBWU35761.g1 Yutaka Satou unpublished cDNA librar... 40 0.012 2
(FF903456) CBWU35761.b1 Yutaka Satou unpublished cDNA librar... 40 0.012 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 0.012 20
(AL031745) Plasmodium falciparum DNA from MAL1P2. 40 0.012 22
(DH503003) Monosiga ovata DNA, fosmid clone: MOF-072H20, gen... 40 0.013 2
(DH477855) Monosiga ovata DNA, fosmid clone: MOF-028L23, gen... 40 0.013 2
(AM443994) Vitis vinifera contig VV78X049510.15, whole genom... 46 0.017 5
(AX344786) Sequence 211 from Patent WO0200927. 36 0.017 6
(AX323639) Sequence 127 from Patent WO0192565. 36 0.017 6
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 0.018 18
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 40 0.024 10
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255... 38 0.028 7
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 34 0.032 23
(AL844509) Plasmodium falciparum chromosome 13. 38 0.043 17
(AM457917) Vitis vinifera contig VV78X244775.4, whole genome... 36 0.046 4
(CP000733) Coxiella burnetii Dugway 5J108-111, complete genome. 40 0.053 2
(CP000890) Coxiella burnetii RSA 331, complete genome. 40 0.054 2
(AE016828) Coxiella burnetii RSA 493, complete genome. 40 0.054 2
(AC147967) Gallus gallus chromosome UNK clone CH261-154I18, ... 38 0.058 2
(AX346975) Sequence 2046 from Patent WO0200928. 40 0.069 6
(AC209227) Populus trichocarpa clone POP074-P16, complete se... 40 0.069 8
(Y10436) C.burnetii put. genes for encoding glucose inhibite... 40 0.071 2
(AF474341) Dictyostelium discoideum ABC transporter ABCC.9 (... 34 0.073 5
(CS592321) Sequence 15 from Patent WO2007039128. 36 0.081 5
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 34 0.11 11
(AM482812) Vitis vinifera contig VV78X253298.9, whole genome... 36 0.11 6
(AC212437) Solanum lycopersicum chromosome 11 clone C11HBa01... 34 0.11 11
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.12 18
(AL035475) Plasmodium falciparum MAL4P2. 38 0.15 16
(AM478272) Vitis vinifera, whole genome shotgun sequence, co... 36 0.16 5
(CE068324) tigr-gss-dog-17000322851367 Dog Library Canis lup... 40 0.21 2
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas... 44 0.23 14
(AM450877) Vitis vinifera contig VV78X087449.9, whole genome... 36 0.26 4
(AM434804) Vitis vinifera contig VV78X033615.9, whole genome... 36 0.27 7
(CP000361) Arcobacter butzleri RM4018, complete genome. 36 0.29 19
(EY328131) CAWY1350.rev CAWY Helobdella robusta Subtracted E... 42 0.29 2
(AX647501) Sequence 1693 from Patent EP1270724. 38 0.32 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 0.33 19
(AL023828) Caenorhabditis elegans YAC Y17G7B. 40 0.33 7
(AM472113) Vitis vinifera, whole genome shotgun sequence, co... 36 0.34 4
(AU223560) Malus x domestica cDNA, clone: S0353, 5' end, exp... 38 0.36 2
(BX569789) Zebrafish DNA sequence from clone DKEY-68O6 in li... 36 0.37 12
(BJ337567) Dictyostelium discoideum cDNA clone:dda57m20, 5' ... 36 0.37 3
(AL391423) Human DNA sequence from clone RP13-43J18 on chrom... 40 0.42 6
(DJ061100) Method and nucleic acids for the improved treatme... 36 0.43 7
(DD214732) PROGNOSTIC MARKERS FOR PREDICTION OF TREATMENT RE... 36 0.43 7
(DD214549) PROGNOSTIC MARKERS FOR PREDICTION OF TREATMENT RE... 36 0.43 7
(CS624412) Sequence 963 from Patent WO2006071466. 36 0.43 7
(CS249060) Sequence 152 from Patent WO2005121360. 36 0.43 7
(CS138456) Sequence 152 from Patent EP1561821. 36 0.43 7
(CS125447) Sequence 1133 from Patent WO2005059172. 36 0.43 7
(AM180355) Clostridium difficile 630 complete genome. 36 0.43 24
(DE219676) Trifolium pratense DNA, clone:RCG10629. 40 0.44 2
(AM450880) Vitis vinifera contig VV78X273185.7, whole genome... 36 0.48 4
(AM484679) Vitis vinifera contig VV78X239116.7, whole genome... 36 0.50 3
(EL689029) OPSC00797 Elaeis guineensis Suspension cell cultu... 40 0.52 2
(CS592315) Sequence 9 from Patent WO2007039128. 36 0.54 7
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 38 0.55 22
(AX344564) Sequence 15 from Patent WO0200932. 36 0.58 17
(AX344560) Sequence 11 from Patent WO0200932. 32 0.58 17
(AX344739) Sequence 164 from Patent WO0200927. 30 0.58 7
(AE017245) Mycoplasma synoviae 53, complete genome. 36 0.59 20
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 34 0.61 18
(AY183926) Drosophila melanogaster centromeric satellite seq... 36 0.61 7
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 38 0.63 11
(AM484390) Vitis vinifera contig VV78X174533.4, whole genome... 40 0.70 6
(EH014617) USDA-FP_187299 Lysiphlebus testaceipes adult whol... 40 0.73 2
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.75 14
(AC182455) Mus musculus BAC clone RP24-77P23 from chromosome... 40 0.76 8
(AL844506) Plasmodium falciparum chromosome 7. 36 0.76 18
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 36 0.78 16
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.81 18
(AQ051141) nbxb0005aH04f CUGI Rice BAC Library Oryza sativa ... 42 0.82 2
(CW008076) ZMMBLa0010A17.f ZMMBLa Zea mays genomic clone ZMM... 38 0.82 2
(DT613532) ACAG-aaa89g09.g1 Hydra_EST_UCI-9 Hydra magnipapil... 28 0.85 5

>(BJ342633) Dictyostelium discoideum cDNA clone:dda14l22, 3' end,
single read.
Length = 906

Score = 908 bits (458), Expect(3) = 0.0
Identities = 479/486 (98%)
Strand = Plus / Minus


Query: 614 agtgttccaaaattcttaaattttgaagagattgtaaataacgaaaataataatatcata 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agtgttccaaaattcttaaattttgaagagattgtaaataacgaaaataataatatcata 455


Query: 674 aaaaatagtttaaaaggaagtggtggtggtggtattggtcgtatgggattattatcaact 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaaaatagtttaaaaggaagtggtggtggtggtattggtcgtatgggattattatcaact 395


Query: 734 tcatcaagttcatttgtagaaaaggttacagcaaaagaaagattccgatatttttataaa 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcatcaagttcatttgtagaaaaggttacagcaaaagaaagattccgatatttttataaa 335


Query: 794 ctttgtaatacatcaaattaaaaccagtacttggttaacttgggtgaaattanttgtttt 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctttgtaatacatcaaattaaaaccagtacttggttaacttgggtgaaattanttgtttt 275


Query: 854 agtatgtattataactttatgttatgttggcaattttcnaatttaaaattcaaagtcatt 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agtatgtattataactttatgttatgttggcaattttcnaatttaaaattcaaagtcatt 215


Query: 914 tatcaacatcatcaaatgataatatttaccaagaaggacatcaattaataaatacatcaa 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tatcaacatcatcaaatgataatatttaccaagaaggacatcaattaataaatacatcaa 155


Query: 974 ccgatgaattaagttcatcaccaagtaaagaaacaaataataatttaatatcaccaccat 1033
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 154 ccgatgaattaagttcatcaccaagtaaagaancnaataataatttaatatcaccaccat 95


Query: 1034 ttaatagtaaattctttaagagtataaatgaaaatacaaatcaaacaccaaaattcactc 1093
||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct: 94 ttaatagtaaattctttaagagtataaatgaaaataccnatcaaacnccannattcactc 35


Query: 1094 atttag 1099
||||||
Sbjct: 34 atttag 29

Score = 218 bits (110), Expect(3) = 0.0
Identities = 128/128 (100%)
Strand = Plus / Minus


Query: 222 atcacccgatgaattagttnctccccaagtaaagaancaaataatatttaatatcnccnc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 atcacccgatgaattagttnctccccaagtaaagaancaaataatatttaatatcnccnc 847


Query: 282 catttaatagtaattctttaagagtataaatgaaaatncaaatcaaacnccaaaattcac 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 catttaatagtaattctttaagagtataaatgaaaatncaaatcaaacnccaaaattcac 787


Query: 342 tcatttag 349
||||||||
Sbjct: 786 tcatttag 779

Score = 214 bits (108), Expect(3) = 0.0
Identities = 108/108 (100%)
Strand = Plus / Minus


Query: 438 catttgaagatgaagatttatttagagaaggtggtcaatcaattaatggcgcgagtgatg 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 catttgaagatgaagatttatttagagaaggtggtcaatcaattaatggcgcgagtgatg 631


Query: 498 gtagttcaagcccaccaattaaaataaaattacaagatacacattatg 545
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gtagttcaagcccaccaattaaaataaaattacaagatacacattatg 583

Score = 345 bits (174), Expect(7) = 0.0
Identities = 174/174 (100%)
Strand = Plus / Minus


Query: 1363 agtgttccaaaattcttaaattttgaagagattgtaaataacgaaaataataatatcata 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 agtgttccaaaattcttaaattttgaagagattgtaaataacgaaaataataatatcata 455


Query: 1423 aaaaatagtttaaaaggaagtggtggtggtggtattggtcgtatgggattattatcaact 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaaaatagtttaaaaggaagtggtggtggtggtattggtcgtatgggattattatcaact 395


Query: 1483 tcatcaagttcatttgtagaaaaggttacagcaaaagaaagattccgatatttt 1536
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tcatcaagttcatttgtagaaaaggttacagcaaaagaaagattccgatatttt 341

Score = 214 bits (108), Expect(7) = 0.0
Identities = 108/108 (100%)
Strand = Plus / Minus


Query: 1187 catttgaagatgaagatttatttagagaaggtggtcaatcaattaatggcgcgagtgatg 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 catttgaagatgaagatttatttagagaaggtggtcaatcaattaatggcgcgagtgatg 631


Query: 1247 gtagttcaagcccaccaattaaaataaaattacaagatacacattatg 1294
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gtagttcaagcccaccaattaaaataaaattacaagatacacattatg 583

Score = 170 bits (86), Expect(7) = 0.0
Identities = 88/89 (98%)
Strand = Plus / Minus


Query: 1533 ttttataaactttgtaatacatcaaattaaaaccagtacttggttaacttgggtgaaatt 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttttataaactttgtaatacatcaaattaaaaccagtacttggttaacttgggtgaaatt 284


Query: 1593 atttgttttagtatgtattataactttat 1621
| |||||||||||||||||||||||||||
Sbjct: 283 anttgttttagtatgtattataactttat 255

Score = 101 bits (51), Expect(7) = 0.0
Identities = 55/57 (96%)
Strand = Plus / Minus


Query: 1043 aattctttaagagtataaatgaaaatacaaatcaaacaccaaaattcactcatttag 1099
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct: 835 aattctttaagagtataaatgaaaatncaaatcaaacnccaaaattcactcatttag 779

Score = 79.8 bits (40), Expect(7) = 0.0
Identities = 42/43 (97%)
Strand = Plus / Minus


Query: 1622 ttatgttggcaattttcaaatttaaaattcaaagtcatttatc 1664
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 253 ttatgttggcaattttcnaatttaaaattcaaagtcatttatc 211

Score = 44.1 bits (22), Expect(7) = 0.0
Identities = 26/28 (92%)
Strand = Plus / Minus


Query: 1016 atttaatatcaccaccatttaatagtaa 1043
|||||||||| || ||||||||||||||
Sbjct: 861 atttaatatcnccnccatttaatagtaa 834

Score = 38.2 bits (19), Expect(7) = 0.0
Identities = 21/22 (95%)
Strand = Plus / Minus


Query: 994 ccaagtaaagaaacaaataata 1015
|||||||||||| |||||||||
Sbjct: 882 ccaagtaaagaancaaataata 861

Score = 75.8 bits (38), Expect(3) = 1e-20
Identities = 52/57 (91%)
Strand = Plus / Minus


Query: 293 aattctttaagagtataaatgaaaatncaaatcaaacnccaaaattcactcatttag 349
|||||||||||||||||||||||||| | ||||||||||| ||||||||||||||
Sbjct: 85 aattctttaagagtataaatgaaaataccnatcaaacnccannattcactcatttag 29

Score = 44.1 bits (22), Expect(3) = 1e-20
Identities = 26/28 (92%)
Strand = Plus / Minus


Query: 267 atttaatatcnccnccatttaatagtaa 294
|||||||||| || ||||||||||||||
Sbjct: 112 atttaatatcaccaccatttaatagtaa 85

Score = 32.2 bits (16), Expect(3) = 1e-20
Identities = 21/22 (95%)
Strand = Plus / Minus


Query: 246 ccaagtaaagaancaaataata 267
|||||||||||||| |||||||
Sbjct: 134 ccaagtaaagaancnaataata 113

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,520,876,919
Number of extensions: 172303720
Number of successful extensions: 17004815
Number of sequences better than 10.0: 358
Length of query: 2357
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2333
Effective length of database: 97,308,875,965
Effective search space: 227021607626345
Effective search space used: 227021607626345
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 6.23
Homology vs Protein
Query= Contig-U07707-1 (Contig-U07707-1Q) /CSM_Contig/Contig-U07707-1Q.Seq.d
(2357 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CP001287_3902(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 102 5e-20
CP000393_1714(CP000393|pid:none) Trichodesmium erythraeum IMS101... 100 3e-19
AI2081(AI2081) hypothetical protein alr2207 [imported] - Nostoc ... 98 2e-18
CP000117_2739(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 95 1e-17
AP009552_2258(AP009552|pid:none) Microcystis aeruginosa NIES-843... 95 1e-17
BX294153_14(BX294153|pid:none) Rhodopirellula baltica SH 1 compl... 94 2e-17
AM778940_3(AM778940|pid:none) Microcystis aeruginosa PCC 7806 ge... 93 5e-17
BT011222_1(BT011222|pid:none) Arabidopsis thaliana At1g03260 gen... 92 1e-16
BT085181_1(BT085181|pid:none) Zea mays full-length cDNA clone ZM... 91 2e-16
BT065229_1(BT065229|pid:none) Zea mays full-length cDNA clone ZM... 89 5e-16
CP000117_2762(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 89 5e-16
AP008207_3288(AP008207|pid:none) Oryza sativa (japonica cultivar... 89 9e-16
BT038621_1(BT038621|pid:none) Zea mays full-length cDNA clone ZM... 88 1e-15
A86164(A86164) protein F15K9.14 [imported] - Arabidopsis thalian... 88 2e-15
CP001323_400(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 88 2e-15
AP005182_15(AP005182|pid:none) Oryza sativa Japonica Group genom... 87 2e-15
EU973439_1(EU973439|pid:none) Zea mays clone 398837 hypothetical... 87 2e-15
EF677948_1(EF677948|pid:none) Picea sitchensis clone WS0279_M15 ... 86 8e-15
AF000657_19(AF000657|pid:none) Arabidopsis thaliana BAC F19G10, ... 85 1e-14
CP000478_2215(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 85 1e-14
AK228918_1(AK228918|pid:none) Arabidopsis thaliana mRNA for hypo... 84 2e-14
CP000251_2513(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 80 3e-13
CP000471_928(CP000471|pid:none) Magnetococcus sp. MC-1, complete... 79 6e-13
BT071720_1(BT071720|pid:none) Picea sitchensis clone WS0442_N24 ... 78 2e-12
CP001133_121(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ... 77 3e-12
BT051720_1(BT051720|pid:none) Medicago truncatula clone MTYF5_F6... 76 5e-12
CP001029_4748(CP001029|pid:none) Methylobacterium populi BJ001, ... 76 6e-12
CP001131_1321(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 74 2e-11
CR954207_156(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 74 2e-11
AP009153_2805(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DN... 74 3e-11
CP000908_4271(CP000908|pid:none) Methylobacterium extorquens PA1... 73 4e-11
CP001393_395(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 73 5e-11
CP000583_177(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 73 5e-11
BA000031_1197(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22... 72 7e-11
AM910993_50(AM910993|pid:none) Plasmodium knowlesi strain H chro... 72 9e-11
CP000698_1540(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 72 9e-11
CP000471_1094(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 71 2e-10
CR954203_174(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 70 3e-10
CP000789_2575(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 70 3e-10
CP000679_425(CP000679|pid:none) Caldicellulosiruptor saccharolyt... 70 3e-10
CP001323_181(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 70 3e-10
CP000435_2758(CP000435|pid:none) Synechococcus sp. CC9311, compl... 70 4e-10
CP000825_1949(CP000825|pid:none) Prochlorococcus marinus str. MI... 69 6e-10
CP001339_1935(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 69 8e-10
BX548175_2811(BX548175|pid:none) Prochlorococcus marinus MIT9313... 69 1e-09
CP000020_1264(CP000020|pid:none) Vibrio fischeri ES114 chromosom... 68 1e-09
CP001087_1270(CP001087|pid:none) Desulfobacterium autotrophicum ... 68 2e-09
CT573073_687(CT573073|pid:none) Kuenenia stuttgartiensis genome ... 68 2e-09
BX548174_1924(BX548174|pid:none) Prochlorococcus marinus MED4 co... 68 2e-09
DQ366732_18(DQ366732|pid:none) Uncultured Prochlorococcus marinu... 68 2e-09
CP001139_1289(CP001139|pid:none) Vibrio fischeri MJ11 chromosome... 67 2e-09
CT971583_2431(CT971583|pid:none) Synechococcus WH7803 complete g... 67 2e-09
CR954247_223(CR954247|pid:none) Pseudoalteromonas haloplanktis s... 67 3e-09
CP000554_2882(CP000554|pid:none) Prochlorococcus marinus str. MI... 67 3e-09
BA000031_1027(BA000031|pid:none) Vibrio parahaemolyticus RIMD 22... 67 4e-09
CP000576_1873(CP000576|pid:none) Prochlorococcus marinus str. MI... 66 6e-09
CP001616_991(CP001616|pid:none) Tolumonas auensis DSM 9187, comp... 66 6e-09
AC005312_13(AC005312|pid:none) Arabidopsis thaliana chromosome 2... 66 6e-09
FM178379_1530(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 65 8e-09
GN103490_1(GN103490|pid:none) Sequence 8271 from Patent WO200903... 65 8e-09
AE003852_1695(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 65 8e-09
GN103484_1(GN103484|pid:none) Sequence 8265 from Patent WO200903... 65 8e-09
EU969092_1(EU969092|pid:none) Zea mays clone 326006 hypothetical... 65 8e-09
CP000304_1654(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 64 2e-08
AC084765_15(AC084765|pid:none) Oryza sativa chromosome 3 BAC OSJ... 64 2e-08
CP001390_1722(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 64 2e-08
CP000447_2934(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 64 2e-08
AP008209_1570(AP008209|pid:none) Oryza sativa (japonica cultivar... 64 2e-08
CP000462_1503(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 64 3e-08
CP000472_4759(CP000472|pid:none) Shewanella piezotolerans WP3, c... 64 3e-08
CP000097_2191(CP000097|pid:none) Synechococcus sp. CC9902, compl... 63 4e-08
AE016795_1977(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos... 63 4e-08
AP008230_2706(AP008230|pid:none) Desulfitobacterium hafniense Y5... 63 5e-08
CP000388_392(CP000388|pid:none) Pseudoalteromonas atlantica T6c,... 63 5e-08
AC151000_12(AC151000|pid:none) Medicago truncatula chromosome 2 ... 62 7e-08
CP001103_1771(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 62 7e-08
CP000850_4486(CP000850|pid:none) Salinispora arenicola CNS-205, ... 62 9e-08
CP001087_612(CP001087|pid:none) Desulfobacterium autotrophicum H... 62 9e-08
CT978603_2414(CT978603|pid:none) Synechococcus sp. RCC307 genomi... 62 1e-07
AL834364_1(AL834364|pid:none) Homo sapiens mRNA; cDNA DKFZp762C1... 62 1e-07
AK123958_1(AK123958|pid:none) Homo sapiens cDNA FLJ41964 fis, cl... 62 1e-07
CP000285_3198(CP000285|pid:none) Chromohalobacter salexigens DSM... 62 1e-07
CP000246_538(CP000246|pid:none) Clostridium perfringens ATCC 131... 61 2e-07
CP000644_2608(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 61 2e-07
BA000016_579(BA000016|pid:none) Clostridium perfringens str. 13 ... 61 2e-07
FM954972_994(FM954972|pid:none) Vibrio splendidus LGP32 chromoso... 61 2e-07
CP000667_4172(CP000667|pid:none) Salinispora tropica CNB-440, co... 61 2e-07
AK221763_1(AK221763|pid:none) Arabidopsis thaliana mRNA for hypo... 60 3e-07
AM114193_181(AM114193|pid:none) Uncultured methanogenic archaeon... 60 3e-07
CP000661_740(CP000661|pid:none) Rhodobacter sphaeroides ATCC 170... 60 3e-07
AE017340_1156(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 60 4e-07
CP000510_2603(CP000510|pid:none) Psychromonas ingrahamii 37, com... 60 4e-07
CP000828_4965(CP000828|pid:none) Acaryochloris marina MBIC11017,... 60 5e-07
CP000511_2717(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 60 5e-07
CP000828_3414(CP000828|pid:none) Acaryochloris marina MBIC11017,... 60 5e-07
CR940347_156(CR940347|pid:none) Theileria annulata strain Ankara... 60 5e-07
CP001291_606(CP001291|pid:none) Cyanothece sp. PCC 7424, complet... 59 6e-07
CP000878_1810(CP000878|pid:none) Prochlorococcus marinus str. MI... 59 6e-07
BX511258_6(BX511258|pid:none) Zebrafish DNA sequence from clone ... 59 6e-07
AP008955_2615(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 59 8e-07
AM412317_355(AM412317|pid:none) Clostridium botulinum A str. ATC... 59 8e-07
CP001581_365(CP001581|pid:none) Clostridium botulinum A2 str. Ky... 59 8e-07
CP000612_1578(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 59 8e-07
AK170682_1(AK170682|pid:none) Mus musculus NOD-derived CD11c +ve... 59 1e-06
BC030341_1(BC030341|pid:none) Mus musculus transmembrane protein... 59 1e-06
CP001344_1943(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 59 1e-06
AK169861_1(AK169861|pid:none) Mus musculus NOD-derived CD11c +ve... 59 1e-06
CP000726_348(CP000726|pid:none) Clostridium botulinum A str. ATC... 59 1e-06
AE005174_2502(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 59 1e-06
CP000553_2145(CP000553|pid:none) Prochlorococcus marinus str. NA... 59 1e-06
(Q3U145) RecName: Full=Transmembrane protein 64; &AK156282_1(AK... 59 1e-06
AE017354_577(AE017354|pid:none) Legionella pneumophila subsp. pn... 59 1e-06
AK035894_1(AK035894|pid:none) Mus musculus 16 days neonate cereb... 59 1e-06
CP000246_1824(CP000246|pid:none) Clostridium perfringens ATCC 13... 58 1e-06
AP011115_7015(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 58 1e-06
BA000016_1612(BA000016|pid:none) Clostridium perfringens str. 13... 58 1e-06
CR628337_633(CR628337|pid:none) Legionella pneumophila str. Lens... 58 2e-06
CP000034_1427(CP000034|pid:none) Shigella dysenteriae Sd197, com... 58 2e-06
CP000675_686(CP000675|pid:none) Legionella pneumophila str. Corb... 58 2e-06
CP001344_1716(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 58 2e-06
CR628336_646(CR628336|pid:none) Legionella pneumophila str. Pari... 58 2e-06
CP000728_355(CP000728|pid:none) Clostridium botulinum F str. Lan... 58 2e-06
CU928164_1297(CU928164|pid:none) Escherichia coli IAI39 chromoso... 58 2e-06
AP009493_6236(AP009493|pid:none) Streptomyces griseus subsp. gri... 58 2e-06
BT036379_1(BT036379|pid:none) Zea mays full-length cDNA clone ZM... 58 2e-06
CU928158_1252(CU928158|pid:none) Escherichia fergusonii ATCC 354... 58 2e-06
AP008971_261(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 58 2e-06
CU928163_2008(CU928163|pid:none) Escherichia coli UMN026 chromos... 58 2e-06
FM180568_1878(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 57 2e-06
CP000377_314(CP000377|pid:none) Silicibacter sp. TM1040, complet... 57 2e-06
CP000036_1233(CP000036|pid:none) Shigella boydii Sb227, complete... 57 2e-06
CR522870_504(CR522870|pid:none) Desulfotalea psychrophila LSv54 ... 57 2e-06
CP000247_1679(CP000247|pid:none) Escherichia coli 536, complete ... 57 2e-06
CP000946_1842(CP000946|pid:none) Escherichia coli ATCC 8739, com... 57 2e-06
CP000117_2337(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 57 3e-06
CP000509_2031(CP000509|pid:none) Nocardioides sp. JS614, complet... 57 3e-06
CP000728_2538(CP000728|pid:none) Clostridium botulinum F str. La... 57 3e-06
BX957279_6(BX957279|pid:none) Zebrafish DNA sequence from clone ... 57 3e-06
CP000038_1318(CP000038|pid:none) Shigella sonnei Ss046, complete... 57 3e-06
AP009240_1921(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 57 3e-06
(P76219) RecName: Full=TVP38/TMEM64 family membrane protein ydjX... 57 3e-06
CP001089_1961(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 57 4e-06
CP001124_454(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 57 4e-06
CP000563_613(CP000563|pid:none) Shewanella baltica OS155, comple... 57 4e-06
CP000749_175(CP000749|pid:none) Marinomonas sp. MWYL1, complete ... 57 4e-06
CP000431_7159(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 57 4e-06
CP001142_72(CP001142|pid:none) Phaeodactylum tricornutum CCAP 10... 57 4e-06
AG2445(AG2445) hypothetical protein all5119 [imported] - Nostoc ... 57 4e-06
AL939108_180(AL939108|pid:none) Streptomyces coelicolor A3(2) co... 56 5e-06
CU928145_1882(CU928145|pid:none) Escherichia coli 55989 chromoso... 56 5e-06
AE005674_1476(AE005674|pid:none) Shigella flexneri 2a str. 301, ... 56 5e-06
AK243486_1(AK243486|pid:none) Oryza sativa Japonica Group cDNA, ... 56 5e-06
CP000728_2539(CP000728|pid:none) Clostridium botulinum F str. La... 56 5e-06
AP009240_1923(AP009240|pid:none) Escherichia coli SE11 DNA, comp... 56 5e-06
CP001063_1726(CP001063|pid:none) Shigella boydii CDC 3083-94, co... 56 5e-06
FM180568_1880(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 56 7e-06
CU928163_2010(CU928163|pid:none) Escherichia coli UMN026 chromos... 56 7e-06
CP000034_1425(CP000034|pid:none) Shigella dysenteriae Sd197, com... 56 7e-06
AP004334_6(AP004334|pid:none) Oryza sativa Japonica Group genomi... 56 7e-06
CP000036_1230(CP000036|pid:none) Shigella boydii Sb227, complete... 56 7e-06
AL939116_177(AL939116|pid:none) Streptomyces coelicolor A3(2) co... 56 7e-06
CP000038_1316(CP000038|pid:none) Shigella sonnei Ss046, complete... 55 9e-06
BT083791_1(BT083791|pid:none) Zea mays full-length cDNA clone ZM... 55 9e-06
CP001581_2797(CP001581|pid:none) Clostridium botulinum A2 str. K... 55 9e-06
CP000577_2701(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 55 1e-05
CP000939_2599(CP000939|pid:none) Clostridium botulinum B1 str. O... 55 1e-05
CP001150_2452(CP001150|pid:none) Rhodobacter sphaeroides KD131 c... 55 1e-05
CP001600_3779(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 55 1e-05
AM412317_2615(AM412317|pid:none) Clostridium botulinum A str. AT... 55 1e-05
AP008230_2705(AP008230|pid:none) Desulfitobacterium hafniense Y5... 55 1e-05
CP000127_552(CP000127|pid:none) Nitrosococcus oceani ATCC 19707,... 55 1e-05
CP001336_3810(CP001336|pid:none) Desulfitobacterium hafniense DC... 55 1e-05
CP000448_1469(CP000448|pid:none) Syntrophomonas wolfei subsp. wo... 55 1e-05
CP000724_3185(CP000724|pid:none) Alkaliphilus metalliredigens QY... 55 1e-05
CP000143_2674(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 54 2e-05
AE017180_1305(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 54 2e-05
CP001124_2697(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 54 2e-05
BT039336_1(BT039336|pid:none) Zea mays full-length cDNA clone ZM... 54 2e-05
CP000252_2914(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 54 2e-05
CP001575_26(CP001575|pid:none) Micromonas sp. RCC299 chromosome ... 54 3e-05
CP000656_3629(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 53 4e-05
CP001322_2982(CP001322|pid:none) Desulfatibacillum alkenivorans ... 53 4e-05
AP008957_3087(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 53 6e-05
CP000698_3685(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 53 6e-05
AK226340_1(AK226340|pid:none) Arabidopsis thaliana mRNA for hypo... 53 6e-05
CP001034_2266(CP001034|pid:none) Natranaerobius thermophilus JW/... 53 6e-05
AC020576_23(AC020576|pid:none) Sequence of BAC T12C22 from Arabi... 52 7e-05
CP000931_138(CP000931|pid:none) Shewanella halifaxensis HAW-EB4,... 52 7e-05
CP000859_2546(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 52 7e-05
CP000764_493(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 52 1e-04
CP000653_1683(CP000653|pid:none) Enterobacter sp. 638, complete ... 52 1e-04
AP006725_2017(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 52 1e-04
CP000155_965(CP000155|pid:none) Hahella chejuensis KCTC 2396, co... 52 1e-04
AP009049_3171(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 52 1e-04
CP000362_1361(CP000362|pid:none) Roseobacter denitrificans OCh 1... 52 1e-04
CP000697_192(CP000697|pid:none) Acidiphilium cryptum JF-5, compl... 51 2e-04
AE001437_667(AE001437|pid:none) Clostridium acetobutylicum ATCC ... 51 2e-04
BT067895_1(BT067895|pid:none) Zea mays full-length cDNA clone ZM... 50 3e-04
BT004115_1(BT004115|pid:none) Arabidopsis thaliana clone RAFL15-... 50 3e-04
AE014296_3920(AE014296|pid:none) Drosophila melanogaster chromos... 50 3e-04
AE008691_488(AE008691|pid:none) Thermoanaerobacter tengcongensis... 50 4e-04
CP001615_1978(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 50 5e-04
AP006618_3483(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 49 8e-04
AM286690_2183(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 49 8e-04
CU458896_2689(CU458896|pid:none) Mycobacterium abscessus chromos... 49 0.001
CP000356_2680(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 49 0.001
CP000923_467(CP000923|pid:none) Thermoanaerobacter sp. X514, com... 48 0.001
CP000753_4267(CP000753|pid:none) Shewanella baltica OS185, compl... 48 0.001
CP000325_1245(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 48 0.002
AP009049_407(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 48 0.002
CP000503_65(CP000503|pid:none) Shewanella sp. W3-18-1, complete ... 47 0.003
CP001034_858(CP001034|pid:none) Natranaerobius thermophilus JW/N... 46 0.005
CP001581_3504(CP001581|pid:none) Clostridium botulinum A2 str. K... 46 0.007
CP000804_3054(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 46 0.007
CP000728_3277(CP000728|pid:none) Clostridium botulinum F str. La... 46 0.007
CP000939_3298(CP000939|pid:none) Clostridium botulinum B1 str. O... 46 0.007
CP000830_336(CP000830|pid:none) Dinoroseobacter shibae DFL 12, c... 45 0.009
AP008971_1357(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA... 45 0.009
CP000891_4441(CP000891|pid:none) Shewanella baltica OS195, compl... 45 0.009
AH2081(AH2081) hypothetical protein asr2206 [imported] - Nostoc ... 45 0.009
CR931997_961(CR931997|pid:none) Corynebacterium jeikeium K411 co... 45 0.009
CP000721_2928(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 45 0.012
CP000774_303(CP000774|pid:none) Parvibaculum lavamentivorans DS-... 45 0.012
AL021635_24(AL021635|pid:none) Arabidopsis thaliana DNA chromoso... 45 0.012
CT573071_1124(CT573071|pid:none) Kuenenia stuttgartiensis genome... 45 0.012
CP000469_4058(CP000469|pid:none) Shewanella sp. ANA-3, complete ... 45 0.015
AM260480_917(AM260480|pid:none) Ralstonia eutropha H16 chromosom... 44 0.020
CP000230_202(CP000230|pid:none) Rhodospirillum rubrum ATCC 11170... 44 0.020
CP001615_2020(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 44 0.020
AP008217_1037(AP008217|pid:none) Oryza sativa (japonica cultivar... 44 0.026
AP009044_1620(AP009044|pid:none) Corynebacterium glutamicum R DN... 44 0.035
CP001615_1235(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 44 0.035
CU633750_738(CU633750|pid:none) Cupriavidus taiwanensis str. LMG... 44 0.035
AM475007_2(AM475007|pid:none) Vitis vinifera contig VV78X102196.... 43 0.045
CP000616_349(CP000616|pid:none) Burkholderia vietnamiensis G4 ch... 43 0.045
CP000813_2502(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 43 0.045
CP000859_2515(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 43 0.045
CP000439_1481(CP000439|pid:none) Francisella tularensis subsp. n... 43 0.059
CP000264_644(CP000264|pid:none) Jannaschia sp. CCS1, complete ge... 43 0.059
CP000444_3947(CP000444|pid:none) Shewanella sp. MR-7, complete g... 43 0.059
AE017346_179(AE017346|pid:none) Cryptococcus neoformans var. neo... 43 0.059
AM233362_276(AM233362|pid:none) Francisella tularensis subsp. ho... 43 0.059
CP001029_4480(CP001029|pid:none) Methylobacterium populi BJ001, ... 43 0.059
CP000806_2346(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 43 0.059
CP000828_3552(CP000828|pid:none) Acaryochloris marina MBIC11017,... 43 0.059
AJ749949_1517(AJ749949|pid:none) Francisella tularensis subsp. t... 43 0.059
CP001027_786(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch... 42 0.10
CP000442_14(CP000442|pid:none) Burkholderia ambifaria AMMD chrom... 42 0.10
CP001393_817(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 42 0.13
CP000127_1822(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 42 0.13
CP000960_76(CP000960|pid:none) Burkholderia cenocepacia MC0-3 ch... 42 0.13
A97233(A97233) uncharacterized conserved membrane protein, DedA ... 41 0.17
CP000544_1888(CP000544|pid:none) Halorhodospira halophila SL1, c... 41 0.17
CP000487_267(CP000487|pid:none) Campylobacter fetus subsp. fetus... 41 0.17
AP009387_640(AP009387|pid:none) Burkholderia multivorans ATCC 17... 41 0.22
AE017262_1504(AE017262|pid:none) Listeria monocytogenes str. 4b ... 41 0.22
CP000127_1755(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 41 0.22
CP000227_2581(CP000227|pid:none) Bacillus cereus Q1, complete ge... 41 0.22
AE017343_206(AE017343|pid:none) Cryptococcus neoformans var. neo... 40 0.38
AE017355_2568(AE017355|pid:none) Bacillus thuringiensis serovar ... 40 0.38
CP000698_2080(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 40 0.38
AE016879_2615(AE016879|pid:none) Bacillus anthracis str. Ames, c... 40 0.38
CP001114_1563(CP001114|pid:none) Deinococcus deserti VCD115, com... 40 0.38
CP000116_1474(CP000116|pid:none) Thiobacillus denitrificans ATCC... 40 0.50
AC183492_17(AC183492|pid:none) Brassica oleracea Contig G, compl... 40 0.50
CP000774_1137(CP000774|pid:none) Parvibaculum lavamentivorans DS... 40 0.50
CP001283_2759(CP001283|pid:none) Bacillus cereus AH820, complete... 39 0.65
CP000724_3163(CP000724|pid:none) Alkaliphilus metalliredigens QY... 39 0.65
CP001230_175(CP001230|pid:none) Persephonella marina EX-H1, comp... 39 0.65
FM992693_238(FM992693|pid:none) Candida dubliniensis CD36 chromo... 39 0.65
AP007281_900(AP007281|pid:none) Lactobacillus reuteri JCM 1112 D... 39 0.85
EU966765_1(EU966765|pid:none) Zea mays clone 297208 gtk16 protei... 39 0.85
AL844505_108(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.85
CP000875_1233(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 39 1.1
FN392322_790(FN392322|pid:none) Pichia pastoris GS115 chromosome... 39 1.1
CP000767_75(CP000767|pid:none) Campylobacter curvus 525.92, comp... 39 1.1
CP000514_281(CP000514|pid:none) Marinobacter aquaeolei VT8, comp... 39 1.1
CP000500_670(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 38 1.5
CP000697_2523(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 38 1.5
AM114193_1722(AM114193|pid:none) Uncultured methanogenic archaeo... 38 1.5
CP001393_1763(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 38 1.5
AE017333_2920(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 38 1.5
CP001325_687(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 38 1.9
CR628336_1522(CR628336|pid:none) Legionella pneumophila str. Par... 38 1.9
AK175741_1(AK175741|pid:none) Arabidopsis thaliana mRNA, complet... 37 2.5
AC183498_55(AC183498|pid:none) Brassica oleracea, *** SEQUENCING... 37 2.5
CP001176_2710(CP001176|pid:none) Bacillus cereus B4264, complete... 37 2.5
AK175186_1(AK175186|pid:none) Arabidopsis thaliana mRNA, complet... 37 2.5
AM295250_335(AM295250|pid:none) Staphylococcus carnosus subsp. c... 37 3.2
AC025416_19(AC025416|pid:none) Genomic sequence for Arabidopsis ... 37 4.2
AP008955_1600(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 37 4.2
CP001620_885(CP001620|pid:none) Corynebacterium kroppenstedtii D... 37 4.2
CP000903_2579(CP000903|pid:none) Bacillus weihenstephanensis KBA... 36 5.5
CP000285_2754(CP000285|pid:none) Chromohalobacter salexigens DSM... 36 5.5
CP000675_1639(CP000675|pid:none) Legionella pneumophila str. Cor... 36 5.5
CP001078_2274(CP001078|pid:none) Clostridium botulinum E3 str. A... 36 7.2
AL929603_437(AL929603|pid:none) Trypanosoma brucei chromosome 1,... 36 7.2
AE014184_387(AE014184|pid:none) Tropheryma whipplei str. Twist, ... 36 7.2
AM910993_382(AM910993|pid:none) Plasmodium knowlesi strain H chr... 35 9.4
EU963293_1(EU963293|pid:none) Zea mays clone 260573 gtk16 protei... 35 9.4
FN357375_8(FN357375|pid:none) Schistosoma mansoni genome sequenc... 35 9.4

>CP001287_3902(CP001287|pid:none) Cyanothece sp. PCC 8801, complete
genome.
Length = 209

Score = 102 bits (255), Expect = 5e-20
Identities = 50/103 (48%), Positives = 68/103 (66%)
Frame = +1

Query: 1828 ASILGGVVAFFLGRYVLRKRISKRIEKNRKLVAVDQAIGQEGWKIVLLLRLTPIVPESIL 2007
AS LG AF +GRY R + K+IEK + A+D+A+ +EGWKIV L RL+P+ P L
Sbjct: 63 ASTLGATSAFLIGRYFTRDWVKKQIEKRPQFQAIDEAVAKEGWKIVGLTRLSPLFPFIFL 122

Query: 2008 NYTLSVTKVNFWHYLICSGIGMIPGCSFFVYVGSSLRTLSDVG 2136
NY SVTKV+ Y+I S IGMIPG +VY+GS + ++ +G
Sbjct: 123 NYAFSVTKVSLRDYIIASWIGMIPGTIMYVYIGSLIGDIASLG 165

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,696,977,527
Number of extensions: 43694320
Number of successful extensions: 111796
Number of sequences better than 10.0: 301
Number of HSP's gapped: 111282
Number of HSP's successfully gapped: 301
Length of query: 785
Length of database: 1,040,966,779
Length adjustment: 137
Effective length of query: 648
Effective length of database: 601,979,734
Effective search space: 390082867632
Effective search space used: 390082867632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.73 gvh: 0.34 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U07707-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 2
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0