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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U07545-1
Contig ID Contig-U07545-1
Contig update 2002. 5. 9
Contig sequence 
>Contig-U07545-1 (Contig-U07545-1Q) /CSM_Contig/Contig-U07545-1Q.Seq.d
ATATGAAATACTTAATACTTTTAATTTTCCTTTTAATAAATTCAACTTTT
GGTAACATACAATTCTCAAAATACATTTCCAATAGTGGTAATGATAATAA
CTCTTGTGGTAGTTTTACATCTCCATGTAAAACAATTGGTTATTCAATTC
AACAAATCAAATCCTATGAATATAATCAATATTCAATTGAAATTTTATTG
GATTCAGGAAATTATTATTCTCAAAATCCAATAAATTTATATGGTTTGAA
TATTTCTATTAGTGCCCAAAATTCAAATGATTTGGTACAATTTTTAGTTC
CAAATATAAATGGTACAGTATCACCAATNTTCATTGTCGAATATCCATAT
AAAGCAACTAGTATTGTTCCTACAAACATTATGATTAGATATGTAACAAT
CTCTGGATGTAACTCTTTAAATGTTTCAGAGTCTGGTTG
Gap no gap
Contig length 439
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4955441
End point 4955098
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U07545
List of clone(s) 

est1=SSA342F,1,440
Translated Amino Acid sequence 
MKYLILLIFLLINSTFGNIQFSKYISNSGNDNNSCGSFTSPCKTIGYSIQQIKSYEYNQY
SIEILLDSGNYYSQNPINLYGLNISISAQNSNDLVQFLVPNINGTVSPXFIVEYPYKATS
IVPTNIMIRYVTISGCNSLNVSESG
Translated Amino Acid sequence (All Frames) 
Frame A:
i*nt*yf*fsf**iqllvtynsqntfpivvmiitlvvvlhlhvkqlviqfnksnpmniin
iqlkfywiqeiiilkiq*iymv*ifllvpkiqmiwynf*fqi*mvqyhqxslsnihikql
vlflqtl*ldm*qsldvtl*mfqslv


Frame B:
yeilntfnfpfnkfnfw*htilkihfq*w****llw*fyism*nnwlfnstnqil*i*si
fn*nfigfrkllfsksnkfiwfeyfy*cpkfk*fgtifsskykwysitnxhcrisi*sn*
ycsykhyd*icnnlwm*lfkcfrvwl


Frame C:
MKYLILLIFLLINSTFGNIQFSKYISNSGNDNNSCGSFTSPCKTIGYSIQQIKSYEYNQY
SIEILLDSGNYYSQNPINLYGLNISISAQNSNDLVQFLVPNINGTVSPXFIVEYPYKATS
IVPTNIMIRYVTISGCNSLNVSESG
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U07545-1 (Contig-U07545-1Q)
/CSM_Contig/Contig-U07545-1Q.Seq.d
         (439 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U07545-1 (Contig-U07545-1Q) /CSM_Contig/Conti...   864  0.0
Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Conti...    46  3e-05
Contig-U14667-1 (Contig-U14667-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U14400-1 (Contig-U14400-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U11917-1 (Contig-U11917-1Q) /CSM_Contig/Conti...    36  0.030
Contig-U01097-1 (Contig-U01097-1Q) /CSM_Contig/Conti...    36  0.030
Contig-U14676-1 (Contig-U14676-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U13974-1 (Contig-U13974-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U13904-1 (Contig-U13904-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti...    34  0.12

>Contig-U07545-1 (Contig-U07545-1Q) /CSM_Contig/Contig-U07545-1Q.Seq.d
          Length = 439

 Score =  864 bits (436), Expect = 0.0
 Identities = 439/439 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgaaatacttaatacttttaattttccttttaataaattcaacttttggtaacatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atatgaaatacttaatacttttaattttccttttaataaattcaacttttggtaacatac 60

                                                                       
Query: 61  aattctcaaaatacatttccaatagtggtaatgataataactcttgtggtagttttacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aattctcaaaatacatttccaatagtggtaatgataataactcttgtggtagttttacat 120

                                                                       
Query: 121 ctccatgtaaaacaattggttattcaattcaacaaatcaaatcctatgaatataatcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctccatgtaaaacaattggttattcaattcaacaaatcaaatcctatgaatataatcaat 180

                                                                       
Query: 181 attcaattgaaattttattggattcaggaaattattattctcaaaatccaataaatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcaattgaaattttattggattcaggaaattattattctcaaaatccaataaatttat 240

                                                                       
Query: 241 atggtttgaatatttctattagtgcccaaaattcaaatgatttggtacaatttttagttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggtttgaatatttctattagtgcccaaaattcaaatgatttggtacaatttttagttc 300

                                                                       
Query: 301 caaatataaatggtacagtatcaccaatnttcattgtcgaatatccatataaagcaacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaatataaatggtacagtatcaccaatnttcattgtcgaatatccatataaagcaacta 360

                                                                       
Query: 361 gtattgttcctacaaacattatgattagatatgtaacaatctctggatgtaactctttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtattgttcctacaaacattatgattagatatgtaacaatctctggatgtaactctttaa 420

                              
Query: 421 atgtttcagagtctggttg 439
           |||||||||||||||||||
Sbjct: 421 atgtttcagagtctggttg 439


>Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Contig-U07284-1Q.Seq.d
          Length = 1400

 Score = 46.1 bits (23), Expect = 3e-05
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                       
Query: 123 ccatgtaaaacaattggttattcaattcaacaaatcaaatcctatgaatataatcaatat 182
           ||||||||| ||||||  |||  |||| | ||||||||||| |||   ||| | |||| |
Sbjct: 134 ccatgtaaatcaattgaatatgtaattaatcaaatcaaatcatattcttatgagcaattt 193

                              
Query: 183 tcaattgaaattttattgg 201
           |||||||||||||||||||
Sbjct: 194 tcaattgaaattttattgg 212


 Score = 34.2 bits (17), Expect = 0.12
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 234 aatttatatggtttgaatatt 254
           |||||||||||||| ||||||
Sbjct: 245 aatttatatggtttaaatatt 265


>Contig-U14667-1 (Contig-U14667-1Q) /CSM_Contig/Contig-U14667-1Q.Seq.d
          Length = 606

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 173 taatcaatattcaattgaaattt 195
           ||||||| |||||||||||||||
Sbjct: 537 taatcaagattcaattgaaattt 559


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8582
Number of Sequences: 6905
Number of extensions: 8582
Number of successful extensions: 887
Number of sequences better than 10.0: 286
length of query: 439
length of database: 5,674,871
effective HSP length: 16
effective length of query: 423
effective length of database: 5,564,391
effective search space: 2353737393
effective search space used: 2353737393
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U07545-1 (Contig-U07545-1Q) /CSM_Contig/Contig-U07545-1Q.Seq.d
         (439 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU072595) Dictyostelium discoideum slug cDNA, clone SSA342.      476   e-130  1
(BJ410097) Dictyostelium discoideum cDNA clone:ddv11o05, 5' ...    46   2e-05  2
(AU270581) Dictyostelium discoideum vegetative cDNA clone:VS...    46   2e-05  2
(CU896652) M.truncatula DNA sequence from clone MTE1-86D9 on...    44   0.028  3
(AC164335) Bos taurus clone CH240-145K5, *** SEQUENCING IN P...    50   0.066  1
(FE834955) CCAG45587.g1 CCAG Petrolisthes cinctipes heart, g...    32   0.21   3
(AC012363) Homo sapiens BAC clone RP11-438O12 from 2, comple...    48   0.26   1
(AZ684545) ENTKG34TF Entamoeba histolytica Sheared DNA Entam...    48   0.26   1
(AZ681242) ENTLD45TR Entamoeba histolytica Sheared DNA Entam...    48   0.26   1
(AZ678701) ENTLB82TF Entamoeba histolytica Sheared DNA Entam...    48   0.26   1
(FE744723) CAYC2516.g1 CAYC Petrolisthes cinctipes heart, ne...    32   0.30   3
(BZ400461) EINBK08TF EI_10_12_KB Entamoeba invadens genomic ...    32   0.31   3
(BH167916) VV_SBa0001J07r Grape Vitis vinifera genomic clone...    42   0.35   2
(CZ674755) OM__Ba0231I12.f OM__Ba Oryza minuta genomic clone...    42   0.36   2
(EK182067) 1095458127122 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.39   2
(AM260525) Bartonella tribocorum CIP 105476 complete genome,...    34   0.48   2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   0.48   11
(AC210132) Populus trichocarpa clone POP011-D09, complete se...    40   0.53   6
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    36   0.57   7
(AC145475) Pan troglodytes BAC clone RP43-34K7 from chromoso...    46   1.0    1
(AC142288) Pan troglodytes BAC clone RP43-178D12 from chromo...    46   1.0    1
(AM477348) Vitis vinifera, whole genome shotgun sequence, co...    46   1.0    1
(AM445903) Vitis vinifera contig VV78X139846.12, whole genom...    46   1.0    1
(FI019695) CHO_OF6925xj08r1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   1.0    1
(FI019620) CHO_OF6925xj08f1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   1.0    1
(FH732706) CHO_OF5114xd05r1.ab1 CHO_OF5 Nicotiana tabacum ge...    46   1.0    1
(ET993343) CHO_OF802xd07f1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.0    1
(ER324384) 1092344199465 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.0    1
(CR795327) GR0AAA12DH06FM1 INRA BAC Bos taurus genomic clone...    38   1.6    2
(AC078987) Homo sapiens chromosome 3 clone RP11-322C16, WORK...    32   2.0    2
(AC094500) Rattus norvegicus clone CH230-4E5, *** SEQUENCING...    34   2.0    2
(AC110111) Rattus norvegicus clone CH230-297N10, *** SEQUENC...    34   2.0    2
(AC156020) Mus musculus BAC clone RP23-343A9 from chromosome...    34   2.0    2
(AC099349) Rattus norvegicus clone CH230-4G5, *** SEQUENCING...    34   2.0    2
(AC165151) Mus musculus BAC clone RP24-77O15 from chromosome...    34   2.1    2
(AL449223) Human DNA sequence from clone RP11-74N20 on chrom...    32   2.1    2
(DD418565) NOVEL COMPOSITIONS AND METHODS IN CANCER.               34   2.2    2
(AC023344) Homo sapiens BAC clone RP11-395G23 from 8, comple...    36   2.3    3
(AC011386) Homo sapiens chromosome 5 clone CTB-15P5, complet...    42   2.4    3
(AC214983) Homo sapiens FOSMID clone ABC11-47141400B12 from ...    38   4.1    2
(CR356225) Zebrafish DNA sequence from clone DKEY-210E9 in l...    44   4.1    1
(AC158170) Mus musculus BAC clone RP23-261K17 from chromosom...    44   4.1    1
(AC146926) Callithrix jacchus clone CH259-265E13, complete s...    44   4.1    1
(AM453069) Vitis vinifera contig VV79X002316.10, whole genom...    44   4.1    1
(AM448066) Vitis vinifera contig VV78X088545.27, whole genom...    44   4.1    1
(AF402141) Schizophyllum commune mitochondrial DNA, complete...    44   4.1    1
(AC153001) Medicago truncatula clone mth2-95k24, complete se...    44   4.1    1
(AC124961) Medicago truncatula clone mth2-18l7, complete seq...    44   4.1    1
(AC155892) Medicago truncatula chromosome 7 clone mth2-52p13...    44   4.1    1
(CR391970) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.1    1
(AC221838) Bos taurus clone CH240-382C17, WORKING DRAFT SEQU...    44   4.1    1
(AC186465) Callicebus moloch clone LB5-215G23, WORKING DRAFT...    44   4.1    1
(AC185563) Callicebus moloch clone LB5-168B10, WORKING DRAFT...    44   4.1    1
(AC182134) Bos taurus clone CH240-343J1, WORKING DRAFT SEQUE...    44   4.1    1
(AQ692067) HS_5408_A2_F10_T7A RPCI-11 Human Male BAC Library...    44   4.1    1
(FH409350) CHO_OF4853xh07f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   4.1    1
(ER964765) SOOAF75JR LargeInsertSoybeanGenLibBuild4 Glycine ...    44   4.1    1
(ER436706) 1092963798705 Global-Ocean-Sampling_GS-35-01-01-1...    44   4.1    1
(DX159100) OR_ABa0012O15.f OR_ABa Oryza ridleyi genomic clon...    44   4.1    1
(DH100294) Oryzias latipes Fosmid clone:GOLWFno346_e13, reve...    44   4.1    1
(DE383959) Bombyx mori genomic DNA, BAC clone:6C8A.                44   4.1    1
(CB891238) EST648207 KV3 Medicago truncatula cDNA clone KV3-...    44   4.1    1
(BQ124371) EST609947 GLSD Medicago truncatula cDNA clone pGL...    44   4.1    1
(BG454070) NF105E06LF1F1040 Developing leaf Medicago truncat...    44   4.1    1
(BF521289) EST458700 DSIL Medicago truncatula cDNA clone pDS...    44   4.1    1
(BE999746) EST431469 GVSN Medicago truncatula cDNA clone pGV...    44   4.1    1
(CU062418) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.3    2
(AC016537) Homo sapiens clone RP11-9F5, WORKING DRAFT SEQUEN...    38   4.6    4
(CU498984) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   4.6    5
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            32   5.9    11
(CU862036) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   6.7    3
(AL035476) Plasmodium falciparum MAL4P3.                           34   7.1    9
(AC165637) Bos taurus clone CH240-164C14, WORKING DRAFT SEQU...    36   7.6    5
(AC202308) Medicago truncatula clone mth2-106n19, WORKING DR...    34   8.3    5
(CU457467) Pig DNA sequence from clone CH242-228O2 on chromo...    34   8.4    4
(AC177668) Strongylocentrotus purpuratus clone R3-1017I19, W...    36   8.5    4
(AC160366) Bos taurus clone CH240-88I18, WORKING DRAFT SEQUE...    34   8.7    4
(CN637003) 142E09_548297 Douglas-fir cDNA library PmIFG_73-6...    38   9.1    2
(AJ618601) Cicindela (Rivacindela) sp. JP-65 mitochondrial p...    38   9.1    2
(AJ618744) Cicindela (Rivacindela) sp. JP-202 mitochondrial ...    38   9.4    2
(AJ618738) Cicindela (Rivacindela) sp. JP-146 mitochondrial ...    38   9.4    2
(AJ618737) Cicindela (Rivacindela) sp. JP-146 mitochondrial ...    38   9.4    2
(AJ618684) Cicindela (Rivacindela) sp. JP-97 mitochondrial p...    38   9.4    2
(AJ618681) Cicindela (Rivacindela) sp. JP-97 mitochondrial p...    38   9.4    2
(AJ618679) Cicindela (Rivacindela) sp. JP-94a mitochondrial ...    38   9.4    2
(AJ618678) Cicindela (Rivacindela) sp. JP-94a mitochondrial ...    38   9.4    2
(AJ618677) Cicindela (Rivacindela) sp. JP-94a mitochondrial ...    38   9.4    2
(AJ618676) Cicindela (Rivacindela) sp. JP-94a mitochondrial ...    38   9.4    2
(AJ618675) Cicindela (Rivacindela) sp. JP-94a mitochondrial ...    38   9.4    2
(AJ618674) Cicindela (Rivacindela) sp. JP-94a mitochondrial ...    38   9.4    2
(AJ618673) Cicindela (Rivacindela) sp. JP-92 mitochondrial p...    38   9.4    2
(AJ618672) Cicindela (Rivacindela) sp. JP-92 mitochondrial p...    38   9.4    2
(AJ618671) Cicindela (Rivacindela) sp. JP-92 mitochondrial p...    38   9.4    2
(AJ618670) Cicindela (Rivacindela) sp. JP-92 mitochondrial p...    38   9.4    2
(AJ618669) Cicindela (Rivacindela) sp. JP-91 mitochondrial p...    38   9.4    2
(AJ618668) Cicindela (Rivacindela) sp. JP-91 mitochondrial p...    38   9.4    2
(AJ618667) Cicindela (Rivacindela) sp. JP-91 mitochondrial p...    38   9.4    2
(AJ618666) Cicindela (Rivacindela) sp. JP-91 mitochondrial p...    38   9.4    2
(AJ618665) Cicindela (Rivacindela) sp. JP-91 mitochondrial p...    38   9.4    2
(AJ618664) Cicindela (Rivacindela) sp. JP-90 mitochondrial p...    38   9.4    2

>(AU072595) Dictyostelium discoideum slug cDNA, clone SSA342.
          Length = 240

 Score =  476 bits (240), Expect = e-130
 Identities = 240/240 (100%)
 Strand = Plus / Plus


Query: 1   atatgaaatacttaatacttttaattttccttttaataaattcaacttttggtaacatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atatgaaatacttaatacttttaattttccttttaataaattcaacttttggtaacatac 60


Query: 61  aattctcaaaatacatttccaatagtggtaatgataataactcttgtggtagttttacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aattctcaaaatacatttccaatagtggtaatgataataactcttgtggtagttttacat 120


Query: 121 ctccatgtaaaacaattggttattcaattcaacaaatcaaatcctatgaatataatcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctccatgtaaaacaattggttattcaattcaacaaatcaaatcctatgaatataatcaat 180


Query: 181 attcaattgaaattttattggattcaggaaattattattctcaaaatccaataaatttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcaattgaaattttattggattcaggaaattattattctcaaaatccaataaatttat 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 593,352,685
Number of extensions: 37890727
Number of successful extensions: 3082476
Number of sequences better than 10.0: 126
Length of query: 439
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 416
Effective length of database: 93,106,754,628
Effective search space: 38732409925248
Effective search space used: 38732409925248
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U07545-1 (Contig-U07545-1Q) /CSM_Contig/Contig-U07545-1Q.Seq.d
         (439 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000721_4256(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    35   1.1
AK226561_1(AK226561|pid:none) Arabidopsis thaliana mRNA for puta...    33   2.4
AY062545_1(AY062545|pid:none) Arabidopsis thaliana Similar to ho...    33   2.4
(Q9FWS9) RecName: Full=BEL1-like homeodomain protein 3;         ...    33   2.4
DQ088866_1(DQ088866|pid:none) Uncultured bacterium eBACred22E04 ...    33   3.1
AE010299_1862(AE010299|pid:none) Methanosarcina acetivorans str....    33   4.0
PN0637(S25021;PN0637;B69679) polyketide synthase pksL - Bacillus...    33   4.0
(Q05470) RecName: Full=Putative polyketide synthase pksL;       ...    33   4.0
CP000721_4873(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    32   5.2
AE013599_3046(AE013599|pid:none) Drosophila melanogaster chromos...    32   6.9
AY808408_1(AY808408|pid:none) Schistosoma japonicum SJCHGC03224 ...    32   8.9

>CP000721_4256(CP000721|pid:none) Clostridium beijerinckii NCIMB
           8052, complete genome.
          Length = 391

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
 Frame = +3

Query: 177 QYSIEILLDSGNYYSQNPINLYGLNISISAQNSNDLVQ------FLVPN---INGT--VS 323
           +YSIE+++D+ + ++  PI++Y +NI   A +SN  +Q      F+V +   +N T  +
Sbjct: 185 KYSIEMIVDAMSSFAGIPIDMYKMNIKYLASSSNKCIQGMAGISFVVADKKALNNTQNIK 244

Query: 324 PXFIVEYPYKATSIVPTNIMIRY 392
           P  +    YK  S    N  +R+
Sbjct: 245 PRNLYLNIYKQYSYFKDNYQMRF 267

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 603,518,252
Number of extensions: 11009681
Number of successful extensions: 24108
Number of sequences better than 10.0: 11
Number of HSP's gapped: 24106
Number of HSP's successfully gapped: 11
Length of query: 146
Length of database: 1,040,966,779
Length adjustment: 109
Effective length of query: 37
Effective length of database: 691,699,714
Effective search space: 25592889418
Effective search space used: 25592889418
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 1.01  gvh: 0.74  alm: 0.45  top: 0.40  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	  8.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: nuclear

>> prediction for Contig-U07545-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0