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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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Contig-U07510-1
Contig ID Contig-U07510-1
Contig update 2002. 5. 9
Contig sequence 
>Contig-U07510-1 (Contig-U07510-1Q) /CSM_Contig/Contig-U07510-1Q.Seq.d
TTTTTTTTTTTTATTTATTAATTTATTTATCTTCACTAAATCATCATTGA
TATTACTACATTTATTTATAAAACTACTTTTTTATTATTTTTTATTTTCC
ACAAATTGTTATTTTACCACATAACCCATCATTTTTTTTTTTTTTTTTTT
ATAAATTAATTAAATATAAATATTATTCACACACAAACAAAAAATAAAAA
TAAATTCCAAATTATATTATTATATACAAAAAAAAATAAAAATAAAATAA
AAATAAATTAATTATTATTAAAACAACACATATAAAAAAAAAAAAAAGTA
CATATACATATATATAAAATTTNAAATAATGAATTCATTAATTAAAAGAG
TAGAAAAGATACAAAAAGAATGTGTGGATGCTGCTGATAAAAATAAACAA
TTAAATGCAGTTGGTACAACAGATGCATTCACATTATTAAGACGTAAAAT
TGGTTTNGATATTNAAGGAATTAGAGANTTANTTAAAGAAAGAGATGAAG
CAGAACCAAGTTTAGGCCCAGGAACAGTTTGAACAGTACAATTATCACAT
CAAGTTAGATCAGCAATTATAGATGTTAAAGGAGAATGTAATAAATTACA
AAGAATGCACGATAAATCAGAAGAAAGATATAAAAGAAAGAATAAAGAAA
ATCCAGAGAAACAAAAGAAATTAGATTTAACAAGAGAAACATGTGAATTA
TGCATGGGCTCATGTAAAAGAATTAGAATTACAAAATAAACAAAGAGGTG
GTGATGGTAGTAAATTCATTCCAAGAGACCATAATCAATCATCATCAAAT
GCATCTGGTACAAAGCAATTACCAGATTTAGATAATGATGACTTTAAAGA
ATTACTTAGAAATGATAAACAAATTGATGGTGTTTTAGATCAAATCTCTG
AACAATTGAAAATCACTGAAAATATTGCAAATGAAATGGGTAAAGCTGCA
ACTAGACAAGGTGTCCTTTTGGATACTCTCAATGATAAAGCTGATGTTTT
AGATGAAAAATTGGAAAATATAAATATTCGTCTTGGAAAAATGATTAAAG
ATATTCGTAAAGCTGATAGATTCATTATTGATGTCATTTTAATTGTAGTT
TTATTAGGTATTATTGGTGCTATCGTTAGTATTGTTAGAAAATAAGAAAA
TAAATAAATAAAAAAAAAAAAAAGTTTAATTTTTTTTATTTTTTTTATCT
GGTTATATAAAAAAAAAAAAAA
Gap no gap
Contig length 1222
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2286761
End point 2287952
Strand (PLUS/MINUS) PLUS
Number of clones 5
Number of EST 5
Link to clone list U07510
List of clone(s) 

est1=SSE520E,1,649
est2=SSJ567E,481,1208
est3=FC-IC1136F,538,809
est4=FC-IC1136Z,685,809
est5=SSH228E,688,1218
Translated Amino Acid sequence 
fffylliylsslnhh*yyyiyl*nyffiifyfpqivilphnpsffffffyklikykyysh
tnkk*k*ipnyiiiykkk*k*nknkliiiktthikkkkstytyi*nxk**ih*lke*kry
kknvwmllikinn*mqlvqqmhshy*dvklvxixkelexxlkkemkqnqv*aqeqfeqyn
yhikldqql*mlkenvinykectinqkkdikerikkiqrnkrn*i*QEKHVNYAWAHVKE
LELQNKQRGGDGSKFIPRDHNQSSSNASGTKQLPDLDNDDFKELLRNDKQIDGVLDQISE
QLKITENIANEMGKAATRQGVLLDTLNDKADVLDEKLENINIRLGKMIKDIRKADRFIID
VILIVVLLGIIGAIVSIVRK*enk*ikkkksliffiffiwlykkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ffffiy*fiylh*iiidittfiykttfllffifhkllfyhithhffffffin*lniniih
tqtknknkfqiillytkknknkikin*lllkqhi*kkkkvhihiykixnnefin*ksrkd
tkrmcgcc**k*tikcswynrcihiikt*nwfxyxrn*rxx*rkr*srtkfrprnslnst
iitss*isnyrc*rrm**itknar*irrki*kke*rksretkeirfnkrnm*imhglm*k
n*nykinkevvmvvnsfqetiinhhqmhlvqsnyqi*immtlknyleminklmvf*iksl
nn*kslkilqmkwvklqldkvsfwilsmiklmf*mknwki*ifvlek*lkifvklidsll
msf*l*fy*vllvlslvllenkkink*kkkkv*fflfflsgyikkkk


Frame B:
ffflfinlfiftksslillhlfikllfyyflfstncyftt*piifffffl*in*i*ilft
hkqkikinsklyyyiqkkikik*k*inyy*nntykkkkkyiyiyikfximnslikrveki
qkecvdaadknkqlnavgttdaftllrrkigxdixgirxlxkerdeaepslgpgtv*tvq
lshqvrsaiidvkgecnklqrmhdkseerykrknkenpekqkkldltretcelcmgsckr
iritk*tkrw*w**ihskrp*siiikciwykaitrfr***l*rit*k**tn*wcfrsnl*
tienh*kyck*ng*scn*trcpfgysq**s*cfr*kigkykysswknd*rys*s**ihy*
chfncsfiryywcyr*yc*kirk*inkkkkkfnffyffylvi*kkkk


Frame C:
fffylliylsslnhh*yyyiyl*nyffiifyfpqivilphnpsffffffyklikykyysh
tnkk*k*ipnyiiiykkk*k*nknkliiiktthikkkkstytyi*nxk**ih*lke*kry
kknvwmllikinn*mqlvqqmhshy*dvklvxixkelexxlkkemkqnqv*aqeqfeqyn
yhikldqql*mlkenvinykectinqkkdikerikkiqrnkrn*i*QEKHVNYAWAHVKE
LELQNKQRGGDGSKFIPRDHNQSSSNASGTKQLPDLDNDDFKELLRNDKQIDGVLDQISE
QLKITENIANEMGKAATRQGVLLDTLNDKADVLDEKLENINIRLGKMIKDIRKADRFIID
VILIVVLLGIIGAIVSIVRK*enk*ikkkksliffiffiwlykkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U07510-1 (Contig-U07510-1Q)
/CSM_Contig/Contig-U07510-1Q.Seq.d
         (1222 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U07510-1 (Contig-U07510-1Q) /CSM_Contig/Conti...   969  0.0
Contig-U11277-1 (Contig-U11277-1Q) /CSM_Contig/Conti...    44  4e-04
Contig-U14836-1 (Contig-U14836-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U13267-1 (Contig-U13267-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12907-1 (Contig-U12907-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12087-1 (Contig-U12087-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11906-1 (Contig-U11906-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11181-1 (Contig-U11181-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10742-1 (Contig-U10742-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12491-1 (Contig-U12491-1Q) /CSM_Contig/Conti...    32  1.4

>Contig-U07510-1 (Contig-U07510-1Q) /CSM_Contig/Contig-U07510-1Q.Seq.d
          Length = 1222

 Score =  969 bits (489), Expect = 0.0
 Identities = 489/489 (100%)
 Strand = Plus / Plus

                                                                        
Query: 671  ttagatttaacaagagaaacatgtgaattatgcatgggctcatgtaaaagaattagaatt 730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671  ttagatttaacaagagaaacatgtgaattatgcatgggctcatgtaaaagaattagaatt 730

                                                                        
Query: 731  acaaaataaacaaagaggtggtgatggtagtaaattcattccaagagaccataatcaatc 790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731  acaaaataaacaaagaggtggtgatggtagtaaattcattccaagagaccataatcaatc 790

                                                                        
Query: 791  atcatcaaatgcatctggtacaaagcaattaccagatttagataatgatgactttaaaga 850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  atcatcaaatgcatctggtacaaagcaattaccagatttagataatgatgactttaaaga 850

                                                                        
Query: 851  attacttagaaatgataaacaaattgatggtgttttagatcaaatctctgaacaattgaa 910
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  attacttagaaatgataaacaaattgatggtgttttagatcaaatctctgaacaattgaa 910

                                                                        
Query: 911  aatcactgaaaatattgcaaatgaaatgggtaaagctgcaactagacaaggtgtcctttt 970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  aatcactgaaaatattgcaaatgaaatgggtaaagctgcaactagacaaggtgtcctttt 970

                                                                        
Query: 971  ggatactctcaatgataaagctgatgttttagatgaaaaattggaaaatataaatattcg 1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  ggatactctcaatgataaagctgatgttttagatgaaaaattggaaaatataaatattcg 1030

                                                                        
Query: 1031 tcttggaaaaatgattaaagatattcgtaaagctgatagattcattattgatgtcatttt 1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 tcttggaaaaatgattaaagatattcgtaaagctgatagattcattattgatgtcatttt 1090

                                                                        
Query: 1091 aattgtagttttattaggtattattggtgctatcgttagtattgttagaaaataagaaaa 1150
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1091 aattgtagttttattaggtattattggtgctatcgttagtattgttagaaaataagaaaa 1150

                     
Query: 1151 taaataaat 1159
            |||||||||
Sbjct: 1151 taaataaat 1159


 Score =  603 bits (304), Expect = e-172
 Identities = 319/319 (100%)
 Strand = Plus / Plus

                                                                       
Query: 298 gtacatatacatatatataaaatttnaaataatgaattcattaattaaaagagtagaaaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gtacatatacatatatataaaatttnaaataatgaattcattaattaaaagagtagaaaa 357

                                                                       
Query: 358 gatacaaaaagaatgtgtggatgctgctgataaaaataaacaattaaatgcagttggtac 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gatacaaaaagaatgtgtggatgctgctgataaaaataaacaattaaatgcagttggtac 417

                                                                       
Query: 418 aacagatgcattcacattattaagacgtaaaattggtttngatattnaaggaattagaga 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aacagatgcattcacattattaagacgtaaaattggtttngatattnaaggaattagaga 477

                                                                       
Query: 478 nttanttaaagaaagagatgaagcagaaccaagtttaggcccaggaacagtttgaacagt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 nttanttaaagaaagagatgaagcagaaccaagtttaggcccaggaacagtttgaacagt 537

                                                                       
Query: 538 acaattatcacatcaagttagatcagcaattatagatgttaaaggagaatgtaataaatt 597
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 acaattatcacatcaagttagatcagcaattatagatgttaaaggagaatgtaataaatt 597

                              
Query: 598 acaaagaatgcacgataaa 616
           |||||||||||||||||||
Sbjct: 598 acaaagaatgcacgataaa 616


 Score =  127 bits (64), Expect = 3e-29
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                      
Query: 13 atttattaatttatttatcttcactaaatcatcattgatattactacatttatttataaa 72
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 atttattaatttatttatcttcactaaatcatcattgatattactacatttatttataaa 72

              
Query: 73 acta 76
          ||||
Sbjct: 73 acta 76


 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                               
Query: 1174 gtttaattttttttattttttttatctggttatat 1208
            |||||||||||||||||||||||||||||||||||
Sbjct: 1174 gtttaattttttttattttttttatctggttatat 1208


 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 258 ttaattattattaaaacaacacatat 283
           ||||||||||||||||||||||||||
Sbjct: 258 ttaattattattaaaacaacacatat 283


>Contig-U11277-1 (Contig-U11277-1Q) /CSM_Contig/Contig-U11277-1Q.Seq.d
          Length = 1070

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1180 ttttttttattttttttatctggtta 1205
            ||||||||||||||||||| ||||||
Sbjct: 98   ttttttttattttttttatttggtta 73


 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1180 ttttttttatttttttt 1196
            |||||||||||||||||
Sbjct: 209  ttttttttatttttttt 193


 Score = 30.2 bits (15), Expect = 5.3
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                           
Query: 1181 tttttttattttttt 1195
            |||||||||||||||
Sbjct: 1057 tttttttattttttt 1043


>Contig-U14836-1 (Contig-U14836-1Q) /CSM_Contig/Contig-U14836-1Q.Seq.d
          Length = 223

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1176 ttaattttttttattttttttatct 1200
            ||||| |||||||||||||||||||
Sbjct: 136  ttaatattttttattttttttatct 112


 Score = 34.2 bits (17), Expect = 0.34
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 1180 ttttttttatttttttt 1196
            |||||||||||||||||
Sbjct: 54   ttttttttatttttttt 38


 Score = 32.2 bits (16), Expect = 1.4
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                
Query: 1179 attttttttattttttttat 1198
            ||||||||||| ||||||||
Sbjct: 124  attttttttatcttttttat 105


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,283
Number of Sequences: 6905
Number of extensions: 35283
Number of successful extensions: 8090
Number of sequences better than 10.0: 1682
length of query: 1222
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1206
effective length of database: 5,564,391
effective search space: 6710655546
effective search space used: 6710655546
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U07510-1 (Contig-U07510-1Q) /CSM_Contig/Contig-U07510-1Q.Seq.d
         (1222 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C91012) Dictyostelium discoideum slug cDNA, clone SSJ567.        866   0.0    1
(AU038068) Dictyostelium discoideum slug cDNA, clone SSH228.      817   0.0    2
(AU272167) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   238   2e-78  2
(C92521) Dictyostelium discoideum slug cDNA, clone SSE520.        230   1e-55  1
(AU074125) Dictyostelium discoideum slug cDNA, clone SSJ567.      178   6e-46  2
(AU272168) Dictyostelium discoideum gamete cDNA clone:FC-IC1...   163   2e-35  1
(EH012817) USDA-FP_185679 Lysiphlebus testaceipes adult whol...    44   6e-04  3
(AU087395) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    38   0.016  3
(AC138973) Homo sapiens 3 BAC CTD-2532M17 (Cal Tech Human BA...    36   0.037  6
(CP001102) Candidatus Amoebophilus asiaticus 5a2, complete g...    52   0.051  1
(AU087418) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    38   0.058  3
(BX784037) Zebrafish DNA sequence from clone DKEY-96H14 in l...    36   0.097  5
(AC184161) Medicago truncatula chromosome 7 BAC clone mte1-2...    38   0.100  5
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.10   7
(AC162115) Bos taurus clone CH240-25J16, WORKING DRAFT SEQUE...    36   0.12   2
(FG082895) UI-FF-IH0-abc-m-15-0-UI.r1 Ceratitis capitata adu...    40   0.17   2
(AL844506) Plasmodium falciparum chromosome  7.                    46   0.19   5
(AC141297) Homo sapiens chromosome 16 clone RP11-677C7, WORK...    40   0.19   4
(AC121291) Mus musculus chromosome 5, clone RP23-170M15, com...    50   0.20   1
(AP009286) Solanum lycopersicum genomic DNA, chromosome 8, c...    38   0.22   6
(EK062183) 1092960093843 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.22   2
(AC106086) Rattus norvegicus clone CH230-126G18, WORKING DRA...    36   0.23   5
(CU683873) Zebrafish DNA sequence from clone CH1073-526L18 i...    36   0.35   5
(BX546466) Zebrafish DNA sequence from clone DKEY-43N10 in l...    42   0.42   3
(AC230463) Bos taurus clone CH240-508E16, WORKING DRAFT SEQU...    36   0.42   6
(AC157287) Bos taurus clone CH240-50I4, WORKING DRAFT SEQUEN...    34   0.44   2
(AC169421) Bos taurus clone CH240-220O13, WORKING DRAFT SEQU...    34   0.44   2
(AC087797) Oryza sativa chromosome 3 BAC OSJNBb0022E02 genom...    36   0.45   2
(ET997444) CHO_OF006xi22r1.ab1 CHO_OF Nicotiana tabacum geno...    34   0.45   3
(EA709275) Sequence 88154 from patent US 7365185.                  36   0.56   2
(CW738321) MARC_839636 RPCI-42-249A20 Bos taurus genomic clo...    34   0.57   2
(CW738350) MARC_839667 RPCI-42-249A20 Bos taurus genomic clo...    34   0.57   2
(AC095126) Rattus norvegicus clone CH230-8N13, *** SEQUENCIN...    42   0.58   4
(FG452394) 010604KAFB006750HT (KAFB) Actinidia deliciosa bud...    36   0.59   2
(BX957336) Zebrafish DNA sequence from clone CH211-286D8 in ...    36   0.67   6
(BZ037333) oeg70c04.g1 B.oleracea002 Brassica oleracea genom...    36   0.75   2
(AL627074) Mouse DNA sequence from clone RP23-465A17 on chro...    48   0.79   1
(AP010486) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   0.79   1
(AP010485) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   0.79   1
(AC106162) Rattus norvegicus clone CH230-56E23, WORKING DRAF...    48   0.79   1
(AP007898) Lotus japonicus genomic DNA, chromosome 3, clone:...    48   0.79   1
(AC219377) Bos taurus clone CH240-338L14, WORKING DRAFT SEQU...    48   0.79   1
(FH704924) CHO_OF5170xo02r1.ab1 CHO_OF5 Nicotiana tabacum ge...    48   0.79   1
(AQ233797) HS_2046_B2_F02_T7 CIT Approved Human Genomic Sper...    48   0.79   1
(EJ631162) 1092963519410 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.79   1
(ES624968) NGPQ177TR NGPP Nasonia giraulti cDNA, mRNA sequence.    48   0.79   1
(AC132294) Mus musculus BAC clone RP24-324F17 from chromosom...    36   0.87   5
(AC182454) Mus musculus BAC clone RP24-141G12 from chromosom...    36   0.92   6
(CR792420) Zebrafish DNA sequence from clone DKEY-34K9 in li...    36   1.0    4
(CU104686) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.1    5
(CR388071) Zebrafish DNA sequence from clone DKEY-25M22 in l...    36   1.2    8
(AE001381) Plasmodium falciparum 3D7 chromosome 2 section 18...    40   1.3    4
(AC024573) Homo sapiens chromosome 5 clone CTD-2293E22, WORK...    40   1.3    2
(CR450838) Zebrafish DNA sequence from clone DKEY-283N16 in ...    40   1.3    4
(BX248522) Zebrafish DNA sequence from clone CH211-113B2 in ...    34   1.4    8
(AC176605) Strongylocentrotus purpuratus clone R3-3079F23, W...    38   1.4    3
(AM453326) Vitis vinifera contig VV78X233388.6, whole genome...    44   1.4    3
(DU222802) 1098574129819 CHORI-243 Ovis aries genomic clone ...    34   1.5    3
(AC147163) Mus musculus BAC clone RP24-317B17 from chromosom...    36   1.5    5
(AL929504) Zebrafish DNA sequence from clone CH211-155A11 in...    36   1.7    4
(CS468836) Sequence 27 from Patent EP1748080.                      36   1.7    2
(CS468835) Sequence 26 from Patent EP1748080.                      36   1.7    2
(CS419313) Sequence 27 from Patent WO2006094836.                   36   1.7    2
(CS419312) Sequence 26 from Patent WO2006094836.                   36   1.7    2
(AC068279) Homo sapiens BAC clone RP11-153P14 from 2, comple...    40   1.7    2
(BX664705) Zebrafish DNA sequence from clone DKEY-11E6 in li...    36   1.9    6
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    42   1.9    9
(CR753813) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    40   1.9    5
(CT573320) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   1.9    6
(EF445046) Homo sapiens vimentin (VIM) gene, complete cds, a...    40   2.0    3
(EY304123) CAWX17479.fwd CAWX Helobdella robusta Primary Ear...    42   2.1    2
(DY890012) CeleSEQ7030 Cunninghamella elegans pBluescript (E...    32   2.1    2
(CU466352) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.2    7
(FG452379) 010604KAFB006727HT (KAFB) Actinidia deliciosa bud...    36   2.2    2
(AC175494) Mus musculus BAC clone RP24-75G20 from chromosome...    36   2.3    6
(CR762470) Zebrafish DNA sequence from clone DKEY-12N16 in l...    36   2.3    4
(BX168785) Danio rerio genomic clone DKEY-175K9, genomic sur...    40   2.3    2
(AC006279) Plasmodium falciparum chromosome 12 clone 3D7, **...    42   2.5    7
(CU915609) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.5    6
(AC119440) Rattus norvegicus clone CH230-149D7, WORKING DRAF...    36   2.5    7
(EA739531) Sequence 10977 from patent US 7368527.                  44   2.5    4
(EA739530) Sequence 10976 from patent US 7368527.                  44   2.5    4
(EA739532) Sequence 10978 from patent US 7368527.                  44   2.5    4
(AC207847) Nomascus leucogenys leucogenys clone CH271-311O3,...    40   2.8    6
(CU024901) Mouse DNA sequence from clone RP24-80B21 on chrom...    38   2.8    6
(EA704127) Sequence 83006 from patent US 7365185.                  42   2.8    2
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   2.9    8
(BX005283) Zebrafish DNA sequence from clone CH211-93G21 in ...    46   3.1    1
(AL929536) Zebrafish DNA sequence from clone CH211-158E23.         46   3.1    1
(AC165230) Mus musculus chromosome 1, clone RP23-65C14, comp...    46   3.1    1
(AC154621) Mus musculus BAC clone RP23-323P15 from chromosom...    46   3.1    1
(U19978) Schizosaccharomyces pombe sak1 gene, complete cds.        46   3.1    1
(CU329670) Schizosaccharomyces pombe chromosome I.                 46   3.1    1
(CS374632) Sequence 735 from Patent WO2006034879.                  46   3.1    1
(CS374360) Sequence 463 from Patent WO2006034879.                  46   3.1    1
(DQ078519) Habrotrocha sp. CWB-2005 clone BCB1/2b cytochrome...    46   3.1    1
(AC133238) Rattus norvegicus clone CH230-411I13, WORKING DRA...    46   3.1    1
(AC125668) Rattus norvegicus clone CH230-21G7, WORKING DRAFT...    46   3.1    1
(AC114503) Rattus norvegicus clone CH230-237C21, *** SEQUENC...    46   3.1    1
(AC094722) Rattus norvegicus clone CH230-5K1, WORKING DRAFT ...    46   3.1    1

>(C91012) Dictyostelium discoideum slug cDNA, clone SSJ567.
          Length = 572

 Score =  866 bits (437), Expect = 0.0
 Identities = 449/453 (99%)
 Strand = Plus / Plus


Query: 702  gcatgggctcatgtaaaagaattagaattacaaaataaacaaagaggtggtgatggtagt 761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60   gcatgggctcatgtaaaagaattagaattacaaaataaacaaagaggtggtgatggtagt 119


Query: 762  aaattcattccaagagaccataatcaatcatcatcaaatgcatctggtacaaagcaatta 821
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 120  aaattcattccaagagaccatactcaatcatcatcaaatgcatctggtacaaagcaatta 179


Query: 822  ccagatttagataatgatgactttaaagaattacttagaaatgataaacaaattgatggt 881
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180  ccagatttagataatgatgactttaaagaattacttagaaatgataaacaaattgatggt 239


Query: 882  gttttagatcaaatctctgaacaattgaaaatcactgaaaatattgcaaatgaaatgggt 941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240  gttttagatcaaatctctgaacaattgaaaatcactgaaaatattgcaaatgaaatgggt 299


Query: 942  aaagctgcaactagacaaggtgtccttttggatactctcaatgataaagctgatgtttta 1001
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300  aaagctgcaactagacaaggtgtccttttggatactctcaatgataaagctgatgtttta 359


Query: 1002 gatgaaaaattggaaaatataaatattcgtcttggaaaaatgattaaagatattcgtaaa 1061
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 360  gatgaaaaattggaaaatataaatattcgccttggaaaaatgattaaagatattcgtaaa 419


Query: 1062 gctgatagattcattattgatgtcattttaattgtagttttattaggtattattggtgct 1121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  gctgatagattcattattgatgtcattttaattgtagttttattaggtattattggtgct 479


Query: 1122 atcgttagtattgttagaaaataagaaaataaa 1154
            ||||||||||||||||||||||||  |||||||
Sbjct: 480  atcgttagtattgttagaaaataaataaataaa 512

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,062,562,600
Number of extensions: 76915242
Number of successful extensions: 8566158
Number of sequences better than 10.0: 205
Length of query: 1222
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1198
Effective length of database: 97,308,875,965
Effective search space: 116576033406070
Effective search space used: 116576033406070
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U07510-1 (Contig-U07510-1Q) /CSM_Contig/Contig-U07510-1Q.Seq.d
         (1222 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC093956_4(AC093956|pid:none) Oryza sativa (japonica cultivar-gr...    49   3e-04
AC150891_8(AC150891|pid:none) Medicago truncatula chromosome 2 c...    49   4e-04
(Q9SF29) RecName: Full=Syntaxin-71;          Short=AtSYP71;  &AC...    47   0.002
BT058701_1(BT058701|pid:none) Salmo salar clone Contig3500 Synap...    41   0.005
FJ664269_1(FJ664269|pid:none) Annona cherimola syntaxin-71 (SYP7...    45   0.005
DQ653131_1(DQ653131|pid:none) Arabidopsis thaliana clone 0000017...    44   0.009
AL132953_4(AL132953|pid:none) Arabidopsis thaliana DNA chromosom...    44   0.009
AB260023_1(AB260023|pid:none) Dugesia japonica DjSNAP-25 mRNA fo...    37   0.027
CP000675_2527(CP000675|pid:none) Legionella pneumophila str. Cor...    42   0.034
(Q94KK5) RecName: Full=Syntaxin-73;          Short=AtSYP73;  &AF...    42   0.034
AC128638_25(AC128638|pid:none) Medicago truncatula clone mth2-36...    42   0.034
CP000382_361(CP000382|pid:none) Clostridium novyi NT, complete g...    42   0.057
AL844508_36(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    42   0.057
BC157148_1(BC157148|pid:none) Xenopus tropicalis hypothetical pr...    35   0.35
AB261082_1(AB261082|pid:none) Entamoeba histolytica gene for EhS...    38   0.83
AL844509_259(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.83
AE013599_3922(AE013599|pid:none) Drosophila melanogaster chromos...    37   1.1
AK017311_1(AK017311|pid:none) Mus musculus 6 days neonate head c...    30   1.2
AB033718_1(AB033718|pid:none) Xenopus laevis XOSNAP-23 mRNA for ...    31   1.2
EF513749_1(EF513749|pid:none) Lateolabrax japonicus SNAP-23 (SNA...    37   1.4
AE014133_319(AE014133|pid:none) Streptococcus mutans UA159, comp...    37   1.4
(O70377) RecName: Full=Synaptosomal-associated protein 23;      ...    30   1.6
EF640950_1(EF640950|pid:none) Babesia bovis isolate Veracruz 1 m...    37   1.8
AE014134_2932(AE014134|pid:none) Drosophila melanogaster chromos...    37   1.8
AE014134_2927(AE014134|pid:none) Drosophila melanogaster chromos...    37   1.8
AE014134_2926(AE014134|pid:none) Drosophila melanogaster chromos...    37   1.8
AM270203_11(AM270203|pid:none) Aspergillus niger contig An09c014...    37   1.8
AM412317_1054(AM412317|pid:none) Clostridium botulinum A str. AT...    37   1.8
AY421747_1(AY421747|pid:none) Neoscona nautica tropomyosin mRNA,...    37   1.8
AE014134_2928(AE014134|pid:none) Drosophila melanogaster chromos...    37   1.8
BX908798_2017(BX908798|pid:none) Parachlamydia-related symbiont ...    33   1.9
CP000361_1041(CP000361|pid:none) Arcobacter butzleri RM4018, com...    36   2.4
AK301207_1(AK301207|pid:none) Homo sapiens cDNA FLJ55596 partial...    36   2.4
AM167555_1(AM167555|pid:none) Dermanyssus gallinae mRNA for trop...    36   2.4
BX571856_286(BX571856|pid:none) Staphylococcus aureus subsp. aur...    36   2.4
AF007169_1(AF007169|pid:none) Mus musculus 23kDa synaptosomal as...    29   2.6
CP000123_228(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    36   3.2
CP001133_280(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ...    36   3.2
CP001519_16(CP001519|pid:none) Borrelia sp. SV1 plasmid SV1_lp17...    36   3.2
AP008983_130(AP008983|pid:none) Clostridium phage c-st genomic D...    35   4.1
CP000968_451(CP000968|pid:none) Candidatus Korarchaeum cryptofil...    35   4.1
AJ390514_1(AJ390514|pid:none) Candida albicans ORF DNA, clone 48...    35   4.1
BC095701_1(BC095701|pid:none) Danio rerio im:7145101, mRNA (cDNA...    35   4.1
AL844509_184(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.1
CR855931_1(CR855931|pid:none) Paramecium tetraurelia macronuclea...    35   5.4
AM946635_1(AM946635|pid:none) Helicobacter pylori partial ORF2 D...    35   5.4
BC136659_1(BC136659|pid:none) Homo sapiens MAX gene associated, ...    35   5.4
(Q8IWI9) RecName: Full=MAX gene-associated protein;                    35   5.4
AK023360_1(AK023360|pid:none) Homo sapiens cDNA FLJ13298 fis, cl...    35   5.4
A64505(A64505)P115 homolog - Methanococcus jannaschii                  35   5.4
CP001283_3162(CP001283|pid:none) Bacillus cereus AH820, complete...    35   7.0
AB209996_1(AB209996|pid:none) Homo sapiens mRNA for CENPE varian...    35   7.0
S28261(S28261) centromere protein E - human  &Z15005_1(Z15005|pi...    35   7.0
CR548612_382(CR548612|pid:none) Paramecium tetraurelia macronucl...    35   7.0
CP000097_1824(CP000097|pid:none) Synechococcus sp. CC9902, compl...    35   7.0
CR382137_249(CR382137|pid:none) Debaryomyces hansenii strain CBS...    35   7.0
AM180355_1291(AM180355|pid:none) Clostridium difficile 630 compl...    34   9.2
AE017355_2969(AE017355|pid:none) Bacillus thuringiensis serovar ...    34   9.2
AL844504_216(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    34   9.2
BX664601_2(BX664601|pid:none) Zebrafish DNA sequence from clone ...    34   9.2
CP001215_1280(CP001215|pid:none) Bacillus anthracis str. CDC 684...    34   9.2
CP001186_3158(CP001186|pid:none) Bacillus cereus G9842, complete...    34   9.2
AE016877_3053(AE016877|pid:none) Bacillus cereus ATCC 14579, com...    34   9.2
CP001176_3093(CP001176|pid:none) Bacillus cereus B4264, complete...    34   9.2
CP001407_3117(CP001407|pid:none) Bacillus cereus 03BB102, comple...    34   9.2
AF410153_23(AF410153|pid:none) Swinepox virus isolate 17077-99, ...    34   9.2
CP000485_2743(CP000485|pid:none) Bacillus thuringiensis str. Al ...    34   9.2

>AC093956_4(AC093956|pid:none) Oryza sativa (japonica cultivar-group)
            chromosome 5 clone OJ1263_E10, complete sequence.
          Length = 316

 Score = 49.3 bits (116), Expect = 3e-04
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
 Frame = +3

Query: 744  RGGDGSKFIPRDHNQSSSNASGTKQLPDLDNDDFKEL-LRNDKQIDGVLDQISEQLKITE 920
            R G   KF   D N       GT++     N   +E  +R  KQ +G LD I E L+  +
Sbjct: 140  RTGGAIKFDTSDGNFDDEYFKGTEE----SNQFRREYEMRKMKQDEG-LDIIGEGLETLK 194

Query: 921  NIANEMGKAATRQGVLLDTLNDKADVLDEKLENINIRLGKMIKDIRKADRF 1073
            N+A++M +   RQ  L+D +++K D  +  L+N N+RL + +  +R +  F
Sbjct: 195  NMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLRSSRNF 245

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,143,479,294
Number of extensions: 17262609
Number of successful extensions: 61884
Number of sequences better than 10.0: 67
Number of HSP's gapped: 61691
Number of HSP's successfully gapped: 75
Length of query: 407
Length of database: 1,040,966,779
Length adjustment: 131
Effective length of query: 276
Effective length of database: 621,205,444
Effective search space: 171452702544
Effective search space used: 171452702544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.77  gvh: 0.24  alm: 0.09  top: 0.53  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for Contig-U07510-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1