Contig-U07284-1 |
Contig ID |
Contig-U07284-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1390 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
4957912 |
End point |
4956520 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
3 |
Number of EST |
5 |
Link to clone list |
U07284 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.11 |
Homology vs DNA |
Query= Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Contig-U07284-1Q.Seq.d (1400 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ428232) Dictyostelium discoideum cDNA clone:ddv11o05, 3' ... 1289 0.0 1 (BJ410097) Dictyostelium discoideum cDNA clone:ddv11o05, 5' ... 1070 0.0 1 (AU270581) Dictyostelium discoideum vegetative cDNA clone:VS... 910 0.0 1 (AU261631) Dictyostelium discoideum vegetative cDNA clone:VS... 751 0.0 3 (AU270582) Dictyostelium discoideum vegetative cDNA clone:VS... 359 e-113 3 (EJ867463) 1093018289739 Global-Ocean-Sampling_GS-30-02-01-1... 46 4e-04 2 (EJ763243) 1092963155076 Global-Ocean-Sampling_GS-30-02-01-1... 46 4e-04 2 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 0.008 19 (BM781300) MLN1_6_A06.g1_A009 Mesenteric lymph node (MLN1) E... 38 0.011 3 (CZ656818) OM__Ba0207J01.r OM__Ba Oryza minuta genomic clone... 38 0.043 3 (CZ669144) OM__Ba0224A16.f OM__Ba Oryza minuta genomic clone... 38 0.051 3 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.064 18 (AC152639) Bos taurus clone CH240-16D3, WORKING DRAFT SEQUEN... 42 0.071 6 (EG341170) KAAN-aaa14d10.b1 Platypus_EST_Cell_line_1.0-4.0kb... 36 0.18 2 (DD391880) Method and nucleic acids for the improved treatme... 50 0.23 1 (DD391606) Method and nucleic acids for the improved treatme... 50 0.23 1 (DD209241) test. 50 0.23 1 (DD209113) test. 50 0.23 1 (CQ807136) Sequence 586 from Patent WO2004035803. 50 0.23 1 (CQ806862) Sequence 312 from Patent WO2004035803. 50 0.23 1 (CQ604184) Sequence 31942 from Patent WO0171042. 50 0.23 1 (AX826078) Sequence 330 from Patent WO03072821. 50 0.23 1 (AX825950) Sequence 202 from Patent WO03072821. 50 0.23 1 (AX822438) Sequence 330 from Patent EP1340818. 50 0.23 1 (AX822310) Sequence 202 from Patent EP1340818. 50 0.23 1 (AX795916) Sequence 259 from Patent WO03052135. 50 0.23 1 (AX795800) Sequence 143 from Patent WO03052135. 50 0.23 1 (AX767542) Sequence 190 from Patent WO03044226. 50 0.23 1 (AX767466) Sequence 114 from Patent WO03044226. 50 0.23 1 (AE014297) Drosophila melanogaster chromosome 3R, complete s... 50 0.23 1 (AC008205) Drosophila melanogaster, chromosome 3R, region 96... 50 0.23 1 (AC155668) Bos taurus clone CH240-41N15, WORKING DRAFT SEQUE... 50 0.23 1 (AC223061) Bos taurus clone CH240-430H10, WORKING DRAFT SEQU... 50 0.23 1 (AC173874) Bos taurus clone CH240-273I2, WORKING DRAFT SEQUE... 50 0.23 1 (AC014104) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 50 0.23 1 (AG968951) Drosophila simulans DNA, clone: DSM1-006I12.F.fa,... 50 0.23 1 (AG962625) Drosophila sechellia DNA, clone: DSE1-022M12.F.fa... 50 0.23 1 (BE977829) bs69f09.y1 Drosophila melanogaster adult testis l... 50 0.23 1 (EJ826732) 1093017564406 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.33 2 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.35 19 (CU862050) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.37 7 (AC211065) Solanum lycopersicum chromosome 6 clone C06HBa024... 36 0.42 6 (AC078829) Oryza sativa chromosome 10 BAC OSJNBa0026O12 geno... 36 0.47 8 (AY254703) Cucumis sativus CAG2 (CAG2) gene, intron and part... 44 0.47 2 (CT583723) Zebrafish DNA sequence from clone DKEY-33B17 in l... 36 0.48 6 (AL844509) Plasmodium falciparum chromosome 13. 38 0.53 19 (BH482829) BOGBA95TR BOGB Brassica oleracea genomic clone BO... 44 0.54 2 (CX737129) 804253 MARC 6BOV Bos taurus cDNA 5', mRNA sequence. 34 0.66 2 (CW770709) OG_BBa0006H06.f OG_BBa Oryza glaberrima genomic c... 38 0.66 2 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.72 11 (CZ049143) OM__Ba0037F20.f OM__Ba Oryza minuta genomic clone... 38 0.79 2 (CZ674880) OM__Ba0231L03.r OM__Ba Oryza minuta genomic clone... 40 0.80 2 (CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 0.82 11 (CZ822296) OC__Ba0201C15.r OC__Ba Oryza coarctata genomic cl... 40 0.85 2 (AC145170) Homo sapiens chromosome 16 clone RP11-346C21, WOR... 36 0.87 6 (CZ780009) OC__Ba0140P19.r OC__Ba Oryza coarctata genomic cl... 40 0.90 2 (AC126050) Mus musculus BAC clone RP23-236L17 from 1, comple... 48 0.91 1 (AC084287) Mus Musculus S train C57BL6/J chromosome 1 BAC, ... 48 0.91 1 (AC107217) Homo sapiens BAC clone RP11-544L19 from 2, comple... 48 0.91 1 (AC074290) Homo sapiens BAC clone RP11-305O20 from 2, comple... 48 0.91 1 (AC159086) Bos taurus clone CH240-17D4, WORKING DRAFT SEQUEN... 48 0.91 1 (AC137304) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 48 0.91 1 (AC131852) Rattus norvegicus clone CH230-2J13, *** SEQUENCIN... 48 0.91 1 (AC117042) Rattus norvegicus clone CH230-21C20, *** SEQUENCI... 48 0.91 1 (AC109965) Rattus norvegicus clone CH230-145N23, WORKING DRA... 48 0.91 1 (AC079428) Mus musculus chromosome 16 clone RP23-122E20, WOR... 48 0.91 1 (AC225014) Bos taurus clone CH240-469M3, WORKING DRAFT SEQUE... 48 0.91 1 (AQ761470) HS_3206_B2_D08_MR CIT Approved Human Genomic Sper... 48 0.91 1 (AQ148761) HS_3136_A1_E07_MR CIT Approved Human Genomic Sper... 48 0.91 1 (EI732804) CHORI51417D20TF BAC library from the primary brea... 48 0.91 1 (EI178685) MUGQ_CH252P184F01Sp6_CN268_011 CHORI-252 Vervet M... 48 0.91 1 (CW952719) TcB38.3_D06_T7 Tribolium BAC library Tribolium ca... 48 0.91 1 (CW939819) TcB20.3_B12_T7 Tribolium BAC library Tribolium ca... 48 0.91 1 (CG770600) TcB44.1_E09_T7 Tribolium BAC library Tribolium ca... 48 0.91 1 (CJ344662) Molgula tectiformis cDNA, embryo just before hatc... 48 0.91 1 (CJ334588) Molgula tectiformis cDNA, embryo just before hatc... 48 0.91 1 (BH167949) VV_SBa0001K03r Grape Vitis vinifera genomic clone... 40 0.97 2 (EI258731) OR__Ba0063O16.r OR__Ba Oryza rufipogon genomic cl... 38 0.98 2 (CW517022) OP__Ba0021C10.r OP__Ba Oryza punctata genomic clo... 38 0.99 2 (EI287825) GM_WBc0008D02.r GM_WBc Glycine max genomic clone ... 40 1.00 2 (CW614664) OA_ABa0157L23.f OA_ABa Oryza australiensis genomi... 40 1.0 2 (AX346912) Sequence 1983 from Patent WO0200928. 32 1.0 5 (AL844507) Plasmodium falciparum chromosome 8. 34 1.1 19 (CZ862325) OC__Ba0256E13.r OC__Ba Oryza coarctata genomic cl... 40 1.1 2 (CZ056833) OM__Ba0050N01.f OM__Ba Oryza minuta genomic clone... 40 1.1 2 (EJ120774) 1092343371818 Global-Ocean-Sampling_GS-27-01-01-1... 38 1.2 2 (AL929090) Zebrafish DNA sequence from clone CH211-14A14 in ... 36 1.2 7 (AC175995) Strongylocentrotus purpuratus clone R3-17K13, WOR... 36 1.3 10 (AP010469) Lotus japonicus genomic DNA, chromosome 3, clone:... 44 1.4 5 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 46 1.4 19 (Z68217) Caenorhabditis elegans Cosmid F58G6. 38 1.8 4 (AC157686) Xenopus tropicalis clone ISB1-168A17, WORKING DRA... 32 1.9 2 (AL034559) Plasmodium falciparum MAL3P7. 34 1.9 12 (AC157691) Xenopus tropicalis clone ISB1-177L8, WORKING DRAF... 32 1.9 2 (AC149069) X. tropicalis BAC clone ISB1-177L8 containing the... 32 1.9 2 (CU463098) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.9 7 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 2.0 16 (CU861952) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.0 5 (AC181958) Strongylocentrotus purpuratus clone R3-1003P19, W... 40 2.4 7 (EK098024) 1092962052202 Global-Ocean-Sampling_GS-31-01-01-1... 38 2.5 3
>(BJ428232) Dictyostelium discoideum cDNA clone:ddv11o05, 3' end, single read. Length = 682
Score = 1289 bits (650), Expect = 0.0 Identities = 650/650 (100%) Strand = Plus / Minus
Query: 553 atggataatgtttctattgtttctttatcatttgtgtcaaatggaacaaactctctcttt 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 682 atggataatgtttctattgtttctttatcatttgtgtcaaatggaacaaactctctcttt 623
Query: 613 tatttggttaatgctcgtgtctcttttaacaaagttagtatttccggttccataagtggt 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 622 tatttggttaatgctcgtgtctcttttaacaaagttagtatttccggttccataagtggt 563
Query: 673 ccatttatcaaagctgttaattgtattgtaactgccaatcaattcaatataatttcagag 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 ccatttatcaaagctgttaattgtattgtaactgccaatcaattcaatataatttcagag 503
Query: 733 aaaaactatgaaatttcatatcatcttatcactttaacagaatcatttgcttactttgaa 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 aaaaactatgaaatttcatatcatcttatcactttaacagaatcatttgcttactttgaa 443
Query: 793 aatagcactatcgttttatccgtaaaatctgatgttaaaaattatttctcaagtaatatt 852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 442 aatagcactatcgttttatccgtaaaatctgatgttaaaaattatttctcaagtaatatt 383
Query: 853 gctattttcaatccagtaaattctgagctttaccttttctctaaccgtatcagttccaat 912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 gctattttcaatccagtaaattctgagctttaccttttctctaaccgtatcagttccaat 323
Query: 913 ggttcatcaattgtttactctcaatcttcagatgtatcagcaaataataatcaattccaa 972 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 ggttcatcaattgtttactctcaatcttcagatgtatcagcaaataataatcaattccaa 263
Query: 973 tatgcaccttacagtgtaaactcttatcaattggtccaatgtgactatggaatatcaaga 1032 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 tatgcaccttacagtgtaaactcttatcaattggtccaatgtgactatggaatatcaaga 203
Query: 1033 ttctatggtgattatcaattcacttcttactctgattcttgtcaagctaaaattaatgtt 1092 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 202 ttctatggtgattatcaattcacttcttactctgattcttgtcaagctaaaattaatgtt 143
Query: 1093 ttatcattttggaatactgacgccaacttacttgaaattatcatatcatatttaagtggt 1152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 142 ttatcattttggaatactgacgccaacttacttgaaattatcatatcatatttaagtggt 83
Query: 1153 gttctctccattgtattggttttcgttactatgttcaccatttcagctat 1202 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 82 gttctctccattgtattggttttcgttactatgttcaccatttcagctat 33
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,685,495,867 Number of extensions: 105440222 Number of successful extensions: 9228776 Number of sequences better than 10.0: 198 Length of query: 1400 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1376 Effective length of database: 97,308,875,965 Effective search space: 133897013327840 Effective search space used: 133897013327840 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.23 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
0 |
VF (FL, S) |
1 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |