Contig-U07284-1
Contig ID Contig-U07284-1
Contig update 2002. 9.13
Contig sequence
>Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Contig-U07284-1Q.Seq.d
CAAAAATATGAAAATATTTAATCTTTTAGTAGTATTACTTTCAATAGTAA
ATATATCACTTGGCCAAATCACATTTCAAAAATATGTTGATTTTAATGGT
TATAATCAACCAAATTGTGGTGCATCAACGGAACCATGTAAATCAATTGA
ATATGTAATTAATCAAATCAAATCATATTCTTATGAGCAATTTTCAATTG
AAATTTTATTGGGTCGTGGAACACATCATTCTTTAACACCAACCAATTTA
TATGGTTTAAATATTACAATTGGAGCAGCCAACCCAGGAGAATCGGTTCA
ACTTTTAGCATCATCATCATTAGGTACAGCACAATTCACTGTAGACCATT
CAAATTATTATGATATTATTCCAACAAATATCGTTTTTAGAGATCTTACT
GTTACTTGTGATTTATCATACACTTGGAATGGTTTACTTTTACAATCAAA
TATTAATTCCTACCAAAATCTATTTTTAAATGTAAAAACAGAAAATGTAA
TATTTTCATGTGCAAATAGCGATTTTTCATATTTTTCAGTTT--------
--ATGGATAATGTTTCTATTGTTTCTTTATCATTTGTGTCAAATGGAACA
AACTCTCTCTTTTATTTGGTTAATGCTCGTGTCTCTTTTAACAAAGTTAG
TATTTCCGGTTCCATAAGTGGTCCATTTATCAAAGCTGTTAATTGTATTG
TAACTGCCAATCAATTCAATATAATTTCAGAGAAAAACTATGAAATTTCA
TATCATCTTATCACTTTAACAGAATCATTTGCTTACTTTGAAAATAGCAC
TATCGTTTTATCCGTAAAATCTGATGTTAAAAATTATTTCTCAAGTAATA
TTGCTATTTTCAATCCAGTAAATTCTGAGCTTTACCTTTTCTCTAACCGT
ATCAGTTCCAATGGTTCATCAATTGTTTACTCTCAATCTTCAGATGTATC
AGCAAATAATAATCAATTCCAATATGCACCTTACAGTGTAAACTCTTATC
AATTGGTCCAATGTGACTATGGAATATCAAGATTCTATGGTGATTATCAA
TTCACTTCTTACTCTGATTCTTGTCAAGCTAAAATTAATGTTTTATCATT
TTGGAATACTGACGCCAACTTACTTGAAATTATCATATCATATTTAAGTG
GTGTTCTCTCCATTGTATTGGTTTTCGTTACTATGTTCACCATTTCAGCT
ATTGGAAAGTGTTGTAGAAGAAAAAGAAAAGCAATTCAAAAATTAAAAAA
GGAAAAAGAAGAAGAAGCTGCAGAAGCAGCAAAATCACTTTTATCAATCA
ATGATTCTGCATAGAATAAAAAAAATAAAATGTACAGTAATTTATAATAA
TTAAAACTAAAATAAATGTTTTTTTTTTTAAAAAAAAAAAAAAAAAAATT

Gap gap included
Contig length 1390
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4957912
End point 4956520
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 5
Link to clone list U07284
List of clone(s)

est1=VSJ855F,1,459
est2=VFF124F,3,543
est3=VFF124Z,544,1225
est4=VSA649Z,820,1392
est5=VSJ855Z,977,1357
Translated Amino Acid sequence
KNMKIFNLLVVLLSIVNISLGQITFQKYVDFNGYNQPNCGASTEPCKSIEYVINQIKSYS
YEQFSIEILLGRGTHHSLTPTNLYGLNITIGAANPGESVQLLASSSLGTAQFTVDHSNYY
DIIPTNIVFRDLTVTCDLSYTWNGLLLQSNINSYQNLFLNVKTENVIFSCANSDFSYFSV
---

---MDNVSIVSLSFVSNGTNSLFYLVNARVSFNKVSISGSISGPFIKAVNCIVTANQFNI
ISEKNYEISYHLITLTESFAYFENSTIVLSVKSDVKNYFSSNIAIFNPVNSELYLFSNRI
SSNGSSIVYSQSSDVSANNNQFQYAPYSVNSYQLVQCDYGISRFYGDYQFTSYSDSCQAK
INVLSFWNTDANLLEIIISYLSGVLSIVLVFVTMFTISAIGKCCRRKRKAIQKLKKEKEE
EAAEAAKSLLSINDSA*nkknkmysnl**lklk*mffflkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
qkyeni*sfssitfnskyitwpnhiskic*f*wl*stklwcingtm*in*icn*snqiif
l*aifn*nfigswntsffntnqfiwfkyynwssqprrigstfsiiiirystihcrpfkll
*yysnkyrf*rsycyl*fiihlewftftiky*flpksifkcknrkcnifmck*rffiffs
---

---MDNVSIVSLSFVSNGTNSLFYLVNARVSFNKVSISGSISGPFIKAVNCIVTANQFNI
ISEKNYEISYHLITLTESFAYFENSTIVLSVKSDVKNYFSSNIAIFNPVNSELYLFSNRI
SSNGSSIVYSQSSDVSANNNQFQYAPYSVNSYQLVQCDYGISRFYGDYQFTSYSDSCQAK
INVLSFWNTDANLLEIIISYLSGVLSIVLVFVTMFTISAIGKCCRRKRKAIQKLKKEKEE
EAAEAAKSLLSINDSA*nkknkmysnl**lklk*mffflkkkkkk

Frame B:
KNMKIFNLLVVLLSIVNISLGQITFQKYVDFNGYNQPNCGASTEPCKSIEYVINQIKSYS
YEQFSIEILLGRGTHHSLTPTNLYGLNITIGAANPGESVQLLASSSLGTAQFTVDHSNYY
DIIPTNIVFRDLTVTCDLSYTWNGLLLQSNINSYQNLFLNVKTENVIFSCANSDFSYFSV
---

---wimfllflyhlcqmeqtlsfiwlmlvslltklvfpvp*vvhlskllivl*lpinsi*
fqrktmkfhiilsl*qnhlltlkialsfyp*nlmlkiisqvillfsiq*ilsftfsltvs
vpmvhqlftlnlqmyqqiiinsnmhltv*tlinwsnvtmeyqdsmviinslltlilvklk
lmfyhfgiltptylklsyhi*vvfsplywfsllcspfqllesvveekekqfkn*krkkkk
klqkqqnhfyqsmilhrikkikctviynn*n*nkcfff*kkkkkn

Frame C:
ki*kylif**yyfq**iyhlakshfknmlilmviinqivvhqrnhvnqlnm*liksnhil
msnfqlkfywvvehiil*hqpiymv*ilqleqptqenrfnf*hhhh*vqhnsl*tiqiim
ilfqqisfleillllviyhtlgmvyfynqiliptkiyf*m*kqkm*yfhvqiaifhifqf
---

---g*cfycffiicvkwnklsllfg*csclf*qs*yfrfhkwsiyqsc*lycncqsiqyn
frekl*nfissyhfnriicll*k*hyrfirki*c*klflk*ycyfqsskf*alpfl*pyq
fqwfincllsifrcisk**sipictlqckllsigpm*lwnikilw*lsihfll*flss*n
*cfiiley*rqlt*nyhiifkwcslhcigfryyvhhfsywkvl*kkkksnskikkgkrrr
scrsskitfinq*fcie*kk*nvq*fiiiktkinvfffkkkkkki

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U07284-1 (Contig-U07284-1Q)
/CSM_Contig/Contig-U07284-1Q.Seq.d
(1400 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Conti... 2351 0.0
Contig-U07545-1 (Contig-U07545-1Q) /CSM_Contig/Conti... 46 1e-04
Contig-U12025-1 (Contig-U12025-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U06970-1 (Contig-U06970-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U01481-1 (Contig-U01481-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U05585-1 (Contig-U05585-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U05196-1 (Contig-U05196-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U04643-1 (Contig-U04643-1Q) /CSM_Contig/Conti... 38 0.025
Contig-U12804-1 (Contig-U12804-1Q) /CSM_Contig/Conti... 36 0.099
Contig-U09569-1 (Contig-U09569-1Q) /CSM_Contig/Conti... 36 0.099

>Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Contig-U07284-1Q.Seq.d
Length = 1400

Score = 2351 bits (1186), Expect = 0.0
Identities = 1216/1216 (100%)
Strand = Plus / Plus


Query: 1 caaaaatatgaaaatatttaatcttttagtagtattactttcaatagtaaatatatcact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caaaaatatgaaaatatttaatcttttagtagtattactttcaatagtaaatatatcact 60


Query: 61 tggccaaatcacatttcaaaaatatgttgattttaatggttataatcaaccaaattgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggccaaatcacatttcaaaaatatgttgattttaatggttataatcaaccaaattgtgg 120


Query: 121 tgcatcaacggaaccatgtaaatcaattgaatatgtaattaatcaaatcaaatcatattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcatcaacggaaccatgtaaatcaattgaatatgtaattaatcaaatcaaatcatattc 180


Query: 181 ttatgagcaattttcaattgaaattttattgggtcgtggaacacatcattctttaacacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatgagcaattttcaattgaaattttattgggtcgtggaacacatcattctttaacacc 240


Query: 241 aaccaatttatatggtttaaatattacaattggagcagccaacccaggagaatcggttca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaccaatttatatggtttaaatattacaattggagcagccaacccaggagaatcggttca 300


Query: 301 acttttagcatcatcatcattaggtacagcacaattcactgtagaccattcaaattatta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acttttagcatcatcatcattaggtacagcacaattcactgtagaccattcaaattatta 360


Query: 361 tgatattattccaacaaatatcgtttttagagatcttactgttacttgtgatttatcata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgatattattccaacaaatatcgtttttagagatcttactgttacttgtgatttatcata 420


Query: 421 cacttggaatggtttacttttacaatcaaatattaattcctaccaaaatctatttttaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cacttggaatggtttacttttacaatcaaatattaattcctaccaaaatctatttttaaa 480


Query: 481 tgtaaaaacagaaaatgtaatattttcatgtgcaaatagcgatttttcatatttttcagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgtaaaaacagaaaatgtaatattttcatgtgcaaatagcgatttttcatatttttcagt 540


Query: 541 ttnnnnnnnnnnatggataatgtttctattgtttctttatcatttgtgtcaaatggaaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttnnnnnnnnnnatggataatgtttctattgtttctttatcatttgtgtcaaatggaaca 600


Query: 601 aactctctcttttatttggttaatgctcgtgtctcttttaacaaagttagtatttccggt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aactctctcttttatttggttaatgctcgtgtctcttttaacaaagttagtatttccggt 660


Query: 661 tccataagtggtccatttatcaaagctgttaattgtattgtaactgccaatcaattcaat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tccataagtggtccatttatcaaagctgttaattgtattgtaactgccaatcaattcaat 720


Query: 721 ataatttcagagaaaaactatgaaatttcatatcatcttatcactttaacagaatcattt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ataatttcagagaaaaactatgaaatttcatatcatcttatcactttaacagaatcattt 780


Query: 781 gcttactttgaaaatagcactatcgttttatccgtaaaatctgatgttaaaaattatttc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gcttactttgaaaatagcactatcgttttatccgtaaaatctgatgttaaaaattatttc 840


Query: 841 tcaagtaatattgctattttcaatccagtaaattctgagctttaccttttctctaaccgt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 tcaagtaatattgctattttcaatccagtaaattctgagctttaccttttctctaaccgt 900


Query: 901 atcagttccaatggttcatcaattgtttactctcaatcttcagatgtatcagcaaataat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 atcagttccaatggttcatcaattgtttactctcaatcttcagatgtatcagcaaataat 960


Query: 961 aatcaattccaatatgcaccttacagtgtaaactcttatcaattggtccaatgtgactat 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aatcaattccaatatgcaccttacagtgtaaactcttatcaattggtccaatgtgactat 1020


Query: 1021 ggaatatcaagattctatggtgattatcaattcacttcttactctgattcttgtcaagct 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ggaatatcaagattctatggtgattatcaattcacttcttactctgattcttgtcaagct 1080


Query: 1081 aaaattaatgttttatcattttggaatactgacgccaacttacttgaaattatcatatca 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaaattaatgttttatcattttggaatactgacgccaacttacttgaaattatcatatca 1140


Query: 1141 tatttaagtggtgttctctccattgtattggttttcgttactatgttcaccatttcagct 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tatttaagtggtgttctctccattgtattggttttcgttactatgttcaccatttcagct 1200


Query: 1201 attggaaagtgttgta 1216
||||||||||||||||
Sbjct: 1201 attggaaagtgttgta 1216


Score = 155 bits (78), Expect = 2e-37
Identities = 94/102 (92%)
Strand = Plus / Plus


Query: 1267 gctgcagaagcagcaaaatcacttttatcaatcaatgattctgcatagaatnnnnnnnnt 1326
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1267 gctgcagaagcagcaaaatcacttttatcaatcaatgattctgcatagaataaaaaaaat 1326


Query: 1327 aaaatgtacagtaatttataataattaaaactaaaataaatg 1368
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 aaaatgtacagtaatttataataattaaaactaaaataaatg 1368


>Contig-U07545-1 (Contig-U07545-1Q) /CSM_Contig/Contig-U07545-1Q.Seq.d
Length = 439

Score = 46.1 bits (23), Expect = 1e-04
Identities = 65/79 (82%)
Strand = Plus / Plus


Query: 134 ccatgtaaatcaattgaatatgtaattaatcaaatcaaatcatattcttatgagcaattt 193
||||||||| |||||| ||| |||| | ||||||||||| ||| ||| | |||| |
Sbjct: 123 ccatgtaaaacaattggttattcaattcaacaaatcaaatcctatgaatataatcaatat 182


Query: 194 tcaattgaaattttattgg 212
|||||||||||||||||||
Sbjct: 183 tcaattgaaattttattgg 201


Score = 34.2 bits (17), Expect = 0.39
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 245 aatttatatggtttaaatatt 265
|||||||||||||| ||||||
Sbjct: 234 aatttatatggtttgaatatt 254


>Contig-U12025-1 (Contig-U12025-1Q) /CSM_Contig/Contig-U12025-1Q.Seq.d
Length = 1366

Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 919 tcaattgtttactctcaatct 939
|||||||||||||||||||||
Sbjct: 78 tcaattgtttactctcaatct 58


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,100
Number of Sequences: 6905
Number of extensions: 22100
Number of successful extensions: 2369
Number of sequences better than 10.0: 230
length of query: 1400
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1384
effective length of database: 5,564,391
effective search space: 7701117144
effective search space used: 7701117144
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.11
Homology vs DNA
Query= Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Contig-U07284-1Q.Seq.d
(1400 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ428232) Dictyostelium discoideum cDNA clone:ddv11o05, 3' ... 1289 0.0 1
(BJ410097) Dictyostelium discoideum cDNA clone:ddv11o05, 5' ... 1070 0.0 1
(AU270581) Dictyostelium discoideum vegetative cDNA clone:VS... 910 0.0 1
(AU261631) Dictyostelium discoideum vegetative cDNA clone:VS... 751 0.0 3
(AU270582) Dictyostelium discoideum vegetative cDNA clone:VS... 359 e-113 3
(EJ867463) 1093018289739 Global-Ocean-Sampling_GS-30-02-01-1... 46 4e-04 2
(EJ763243) 1092963155076 Global-Ocean-Sampling_GS-30-02-01-1... 46 4e-04 2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 0.008 19
(BM781300) MLN1_6_A06.g1_A009 Mesenteric lymph node (MLN1) E... 38 0.011 3
(CZ656818) OM__Ba0207J01.r OM__Ba Oryza minuta genomic clone... 38 0.043 3
(CZ669144) OM__Ba0224A16.f OM__Ba Oryza minuta genomic clone... 38 0.051 3
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.064 18
(AC152639) Bos taurus clone CH240-16D3, WORKING DRAFT SEQUEN... 42 0.071 6
(EG341170) KAAN-aaa14d10.b1 Platypus_EST_Cell_line_1.0-4.0kb... 36 0.18 2
(DD391880) Method and nucleic acids for the improved treatme... 50 0.23 1
(DD391606) Method and nucleic acids for the improved treatme... 50 0.23 1
(DD209241) test. 50 0.23 1
(DD209113) test. 50 0.23 1
(CQ807136) Sequence 586 from Patent WO2004035803. 50 0.23 1
(CQ806862) Sequence 312 from Patent WO2004035803. 50 0.23 1
(CQ604184) Sequence 31942 from Patent WO0171042. 50 0.23 1
(AX826078) Sequence 330 from Patent WO03072821. 50 0.23 1
(AX825950) Sequence 202 from Patent WO03072821. 50 0.23 1
(AX822438) Sequence 330 from Patent EP1340818. 50 0.23 1
(AX822310) Sequence 202 from Patent EP1340818. 50 0.23 1
(AX795916) Sequence 259 from Patent WO03052135. 50 0.23 1
(AX795800) Sequence 143 from Patent WO03052135. 50 0.23 1
(AX767542) Sequence 190 from Patent WO03044226. 50 0.23 1
(AX767466) Sequence 114 from Patent WO03044226. 50 0.23 1
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 50 0.23 1
(AC008205) Drosophila melanogaster, chromosome 3R, region 96... 50 0.23 1
(AC155668) Bos taurus clone CH240-41N15, WORKING DRAFT SEQUE... 50 0.23 1
(AC223061) Bos taurus clone CH240-430H10, WORKING DRAFT SEQU... 50 0.23 1
(AC173874) Bos taurus clone CH240-273I2, WORKING DRAFT SEQUE... 50 0.23 1
(AC014104) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 50 0.23 1
(AG968951) Drosophila simulans DNA, clone: DSM1-006I12.F.fa,... 50 0.23 1
(AG962625) Drosophila sechellia DNA, clone: DSE1-022M12.F.fa... 50 0.23 1
(BE977829) bs69f09.y1 Drosophila melanogaster adult testis l... 50 0.23 1
(EJ826732) 1093017564406 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.33 2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.35 19
(CU862050) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.37 7
(AC211065) Solanum lycopersicum chromosome 6 clone C06HBa024... 36 0.42 6
(AC078829) Oryza sativa chromosome 10 BAC OSJNBa0026O12 geno... 36 0.47 8
(AY254703) Cucumis sativus CAG2 (CAG2) gene, intron and part... 44 0.47 2
(CT583723) Zebrafish DNA sequence from clone DKEY-33B17 in l... 36 0.48 6
(AL844509) Plasmodium falciparum chromosome 13. 38 0.53 19
(BH482829) BOGBA95TR BOGB Brassica oleracea genomic clone BO... 44 0.54 2
(CX737129) 804253 MARC 6BOV Bos taurus cDNA 5', mRNA sequence. 34 0.66 2
(CW770709) OG_BBa0006H06.f OG_BBa Oryza glaberrima genomic c... 38 0.66 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.72 11
(CZ049143) OM__Ba0037F20.f OM__Ba Oryza minuta genomic clone... 38 0.79 2
(CZ674880) OM__Ba0231L03.r OM__Ba Oryza minuta genomic clone... 40 0.80 2
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 0.82 11
(CZ822296) OC__Ba0201C15.r OC__Ba Oryza coarctata genomic cl... 40 0.85 2
(AC145170) Homo sapiens chromosome 16 clone RP11-346C21, WOR... 36 0.87 6
(CZ780009) OC__Ba0140P19.r OC__Ba Oryza coarctata genomic cl... 40 0.90 2
(AC126050) Mus musculus BAC clone RP23-236L17 from 1, comple... 48 0.91 1
(AC084287) Mus Musculus S train C57BL6/J chromosome 1 BAC, ... 48 0.91 1
(AC107217) Homo sapiens BAC clone RP11-544L19 from 2, comple... 48 0.91 1
(AC074290) Homo sapiens BAC clone RP11-305O20 from 2, comple... 48 0.91 1
(AC159086) Bos taurus clone CH240-17D4, WORKING DRAFT SEQUEN... 48 0.91 1
(AC137304) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 48 0.91 1
(AC131852) Rattus norvegicus clone CH230-2J13, *** SEQUENCIN... 48 0.91 1
(AC117042) Rattus norvegicus clone CH230-21C20, *** SEQUENCI... 48 0.91 1
(AC109965) Rattus norvegicus clone CH230-145N23, WORKING DRA... 48 0.91 1
(AC079428) Mus musculus chromosome 16 clone RP23-122E20, WOR... 48 0.91 1
(AC225014) Bos taurus clone CH240-469M3, WORKING DRAFT SEQUE... 48 0.91 1
(AQ761470) HS_3206_B2_D08_MR CIT Approved Human Genomic Sper... 48 0.91 1
(AQ148761) HS_3136_A1_E07_MR CIT Approved Human Genomic Sper... 48 0.91 1
(EI732804) CHORI51417D20TF BAC library from the primary brea... 48 0.91 1
(EI178685) MUGQ_CH252P184F01Sp6_CN268_011 CHORI-252 Vervet M... 48 0.91 1
(CW952719) TcB38.3_D06_T7 Tribolium BAC library Tribolium ca... 48 0.91 1
(CW939819) TcB20.3_B12_T7 Tribolium BAC library Tribolium ca... 48 0.91 1
(CG770600) TcB44.1_E09_T7 Tribolium BAC library Tribolium ca... 48 0.91 1
(CJ344662) Molgula tectiformis cDNA, embryo just before hatc... 48 0.91 1
(CJ334588) Molgula tectiformis cDNA, embryo just before hatc... 48 0.91 1
(BH167949) VV_SBa0001K03r Grape Vitis vinifera genomic clone... 40 0.97 2
(EI258731) OR__Ba0063O16.r OR__Ba Oryza rufipogon genomic cl... 38 0.98 2
(CW517022) OP__Ba0021C10.r OP__Ba Oryza punctata genomic clo... 38 0.99 2
(EI287825) GM_WBc0008D02.r GM_WBc Glycine max genomic clone ... 40 1.00 2
(CW614664) OA_ABa0157L23.f OA_ABa Oryza australiensis genomi... 40 1.0 2
(AX346912) Sequence 1983 from Patent WO0200928. 32 1.0 5
(AL844507) Plasmodium falciparum chromosome 8. 34 1.1 19
(CZ862325) OC__Ba0256E13.r OC__Ba Oryza coarctata genomic cl... 40 1.1 2
(CZ056833) OM__Ba0050N01.f OM__Ba Oryza minuta genomic clone... 40 1.1 2
(EJ120774) 1092343371818 Global-Ocean-Sampling_GS-27-01-01-1... 38 1.2 2
(AL929090) Zebrafish DNA sequence from clone CH211-14A14 in ... 36 1.2 7
(AC175995) Strongylocentrotus purpuratus clone R3-17K13, WOR... 36 1.3 10
(AP010469) Lotus japonicus genomic DNA, chromosome 3, clone:... 44 1.4 5
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 46 1.4 19
(Z68217) Caenorhabditis elegans Cosmid F58G6. 38 1.8 4
(AC157686) Xenopus tropicalis clone ISB1-168A17, WORKING DRA... 32 1.9 2
(AL034559) Plasmodium falciparum MAL3P7. 34 1.9 12
(AC157691) Xenopus tropicalis clone ISB1-177L8, WORKING DRAF... 32 1.9 2
(AC149069) X. tropicalis BAC clone ISB1-177L8 containing the... 32 1.9 2
(CU463098) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.9 7
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 2.0 16
(CU861952) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.0 5
(AC181958) Strongylocentrotus purpuratus clone R3-1003P19, W... 40 2.4 7
(EK098024) 1092962052202 Global-Ocean-Sampling_GS-31-01-01-1... 38 2.5 3

>(BJ428232) Dictyostelium discoideum cDNA clone:ddv11o05, 3' end,
single read.
Length = 682

Score = 1289 bits (650), Expect = 0.0
Identities = 650/650 (100%)
Strand = Plus / Minus


Query: 553 atggataatgtttctattgtttctttatcatttgtgtcaaatggaacaaactctctcttt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atggataatgtttctattgtttctttatcatttgtgtcaaatggaacaaactctctcttt 623


Query: 613 tatttggttaatgctcgtgtctcttttaacaaagttagtatttccggttccataagtggt 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tatttggttaatgctcgtgtctcttttaacaaagttagtatttccggttccataagtggt 563


Query: 673 ccatttatcaaagctgttaattgtattgtaactgccaatcaattcaatataatttcagag 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccatttatcaaagctgttaattgtattgtaactgccaatcaattcaatataatttcagag 503


Query: 733 aaaaactatgaaatttcatatcatcttatcactttaacagaatcatttgcttactttgaa 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaaaactatgaaatttcatatcatcttatcactttaacagaatcatttgcttactttgaa 443


Query: 793 aatagcactatcgttttatccgtaaaatctgatgttaaaaattatttctcaagtaatatt 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aatagcactatcgttttatccgtaaaatctgatgttaaaaattatttctcaagtaatatt 383


Query: 853 gctattttcaatccagtaaattctgagctttaccttttctctaaccgtatcagttccaat 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gctattttcaatccagtaaattctgagctttaccttttctctaaccgtatcagttccaat 323


Query: 913 ggttcatcaattgtttactctcaatcttcagatgtatcagcaaataataatcaattccaa 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggttcatcaattgtttactctcaatcttcagatgtatcagcaaataataatcaattccaa 263


Query: 973 tatgcaccttacagtgtaaactcttatcaattggtccaatgtgactatggaatatcaaga 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatgcaccttacagtgtaaactcttatcaattggtccaatgtgactatggaatatcaaga 203


Query: 1033 ttctatggtgattatcaattcacttcttactctgattcttgtcaagctaaaattaatgtt 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ttctatggtgattatcaattcacttcttactctgattcttgtcaagctaaaattaatgtt 143


Query: 1093 ttatcattttggaatactgacgccaacttacttgaaattatcatatcatatttaagtggt 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ttatcattttggaatactgacgccaacttacttgaaattatcatatcatatttaagtggt 83


Query: 1153 gttctctccattgtattggttttcgttactatgttcaccatttcagctat 1202
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 gttctctccattgtattggttttcgttactatgttcaccatttcagctat 33

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,685,495,867
Number of extensions: 105440222
Number of successful extensions: 9228776
Number of sequences better than 10.0: 198
Length of query: 1400
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1376
Effective length of database: 97,308,875,965
Effective search space: 133897013327840
Effective search space used: 133897013327840
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.23
Homology vs Protein
Query= Contig-U07284-1 (Contig-U07284-1Q) /CSM_Contig/Contig-U07284-1Q.Seq.d
(1400 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE001439_273(AE001439|pid:none) Helicobacter pylori J99, complet... 40 0.15
A64556(A64556) toxin-like outer membrane protein HP0289 - Helico... 39 0.34
AX044596_1(AX044596|pid:none) Sequence 57 from Patent WO0066722. 39 0.34
AX044722_1(AX044722|pid:none) Sequence 183 from Patent WO0066722. 39 0.34
CP001173_259(CP001173|pid:none) Helicobacter pylori G27, complet... 39 0.45
EU170084_1(EU170084|pid:none) Tribolium castaneum gustatory rece... 36 2.9
AM260522_500(AM260522|pid:none) Helicobacter acinonychis str. Sh... 33 3.3
AF010143_1(AF010143|pid:none) Campylobacter rectus S-layer prote... 35 6.5

>AE001439_273(AE001439|pid:none) Helicobacter pylori J99, complete
genome. &AX055208_1(AX055208|pid:none) &C71953(C71953)
Length = 2902

Score = 40.4 bits (93), Expect = 0.15
Identities = 52/207 (25%), Positives = 79/207 (38%), Gaps = 13/207 (6%)
Frame = +1

Query: 589 SNGTNSLFYLVNARVSFNKVSISGSISGPFIKAVNCIVTANQFNIISEKNYEI-SYHLIT 765
SNG++ F N V+FN +I+ S+S I + QFN+ + + + IT
Sbjct: 1388 SNGSHLNF---NGAVNFNSANITTSLSSSSIVFKGAVSLRGQFNLSNNSSLDFQGSSAIT 1444

Query: 766 LTESFAYFEN----STIVLSVKSDVKNYFSSNIAIFNPVNSELYLFSNR---ISSNGXXX 924
+F +++N S I D+K S + NP NS + N S G
Sbjct: 1445 SNTAFNFYDNAFSQSPITFHQALDIKVPLSLGGNLLNPNNSSVLNLKNSQLVFSDQGSLN 1504

Query: 925 XXXXXXXXXANNNQFQYAPYSVNSYQLVQCD-----YGISRFYGDYQFTSYSDSCQAKIN 1089
N N+ + Y ++Q D Y F+G D AK
Sbjct: 1505 IANIDLLSDLNGNKNRV-------YNIIQADMNGNWYERINFFGMRINDGIYD---AKNQ 1554

Query: 1090 VLSFWNTDANLLEIIISYLSGVLSIVL 1170
SF N N L+I S+ + LS+ L
Sbjct: 1555 TYSFTNPLNNALKITESFKNNQLSVTL 1581

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 1,944,156,482
Number of extensions: 35772632
Number of successful extensions: 99195
Number of sequences better than 10.0: 8
Number of HSP's gapped: 99164
Number of HSP's successfully gapped: 9
Length of query: 466
Length of database: 1,040,966,779
Length adjustment: 132
Effective length of query: 334
Effective length of database: 618,001,159
Effective search space: 206412387106
Effective search space used: 206412387106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.96 gvh: 0.71 alm: 0.19 top: 0.33 tms: 0.07 mit: 0.27 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.11 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

32.0 %: extracellular, including cell wall
32.0 %: plasma membrane
20.0 %: endoplasmic reticulum
12.0 %: Golgi
4.0 %: nuclear

>> prediction for Contig-U07284-1 is exc

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0