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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U07162-1
Contig ID Contig-U07162-1
Contig update 2002. 5. 9
Contig sequence 
>Contig-U07162-1 (Contig-U07162-1Q) /CSM_Contig/Contig-U07162-1Q.Seq.d
AAAACAAAACAAAACCNAACAAAGCAAAACAAAGCAAATCAAAAATAGCG
TCTTATAAAAAAACAAAACAAAACAAAACCAAACAAAGCAAATCAAAAAT
AGCGTCTTATAAAAAAAAAATGTTTAATAGAAATAGTAATATTGAAAATT
TAGAAAATAAATTAAGTGGTATTAATGAGAGTATAACAAATGGGAAATTA
GACATTTCAAAAAAGAGTCAATTTTTCATTGACCAGTTAATGAAATTTGA
TACAAGTTCAAAACGATTAGATATAGTGGCATCATTTATCAGTAATAAAA
AGTATTCAACATTTCAAGAATTAAAACAGTCATATCAAGATCAAATGTCA
AGATCTATCTGTGGTAAAGTTTGGAACTCAGAGTCTCATATTTATAAATG
TTTAGATTGTCAAATTGATGATAATTGTGCAATTTGTATTGACTGTTTTG
AGGAGGATAAACATGTTGGACATAGATATAGATTAATAGTTGGTTTTAAT
GGCTGTTGTGATTGTGGTGATTTTAGTGCGTGGAAAAAGGAGGGATGTTG
TTCAGTGCATGTTAAACGTGAAGGTCAAGAGAAAGGTGATGATACTAAGG
TGAAGCAACCATTGCCAGAGAGTACAGAGTTCATAATGATCGATATTTTT
TTAACCAGAATATTAACGGATCTTTCAATCAATAGATATACTGTTACAAC
TGAGTCACTTTTAGATATTTTAAATAAATTCATTGATGTGTTGGGTGACG
ATTTCACACTACTAATAACGAATTTCATTTCAAAATTAAATCAATCACCA
TTAATCATAACATTACCTAAAAGAATCAGTAGCTCAGCATCGGTAATATT
GCCAAAGACAACAACATCATCTTCCACAACAACCTATAAGGTGACATTGA
CAGAAAGACATATTTTTAATGGCCTAAGTCTATTCACAAGTAAGGGCATA
CCAACATTGGAGAAGTTTGTAATCTCATTATTTATCTCTACTGATTTCAG
AGATACCTTGGCAATGTCAATAGCTGAAGCATTCTCTTGTCCAACTTATG
ATTCAAGTTTAACTGTACAATTATTCACTGTCGACAGTACCGCTTTAAAA
ATCGTTGAAACTGGTAAATTTAAATATATGCTTAATACTTTCCTTAGATC
ATTATTAAATGAAGAAGATGATAAAGATAAAATTATCCTTCTACGTGAAG
GTGAGGTTATAGAACAGGTTTTAGAGGAAGATCATCAATATAGAAGGTAA
AAGTAAACTTTGGGGAACCGTATATCTAGATGCTGAACATGGTGCTGAAG
ATTATGGTTTAAAAAGAGGTAAACCTTTAAC----------NNNNNNNNN
NAACTAGACATATAGAGTATGAAGATCAAACTTGGGTTCATTGTTTTTAT
TCTGAAATTTATCTTACAAAGTATATAACGCATGCAATTTTCGATCAATT
TAAAGATAATGAAAAATTAATCACAAAGGAAAGTCAAATTGTTAACATAA
GAGATTTCATATTCAATCATATTATTGACTATTATAAATATGAAAGTGTA
CATGAAGTTGGAGGTAATACTACTAGTAATAGTGATGTTAGTGGTTATAA
AAATACTATAAGATTGCCTTTTAAAGAGAGCGATAGTGGTGATAAAGATA
TTATAAAATGGAAAATGGGTATTAGAGATACTGTTATTCCAGAATATAGA
GTTTCAAAACAACCAGTTTCAATTCATATACCATTACATCGTGCATTTAC
AAGTGCCGTCTATTTTCAATCAATTAAATTTAATACAACACCAGAGGAAG
TTTTAAAAATATTGTCAAAAAAATTCCATATATCATAGTGTTTGTTCTGC
TGTTATTGAACATGTATTTAGAGCATTTTCAATGTCATTCCAATTTTTGG
CTGGTATGTGGGTTAGAAATGGTGATCCAATGAAGAATCAAATCGCAAAT
TATTTCCGTGTAAAAGATCAAAATAGTACAGTGGATTTATATTTGATGCA
ATATGTATCATTGGCAATGGAACCAAAGATTTTCTTTTCACAATTTTTAG
ATCGTTGTGAATTATGTTCTGGTTTTATTTAGAGGTCATATTTTTATNAN
AACAAAATCA
Gap gap included
Contig length 2100
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1229162
End point 1227060
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 5
Link to clone list U07162
List of clone(s) 

est1=CFG862F,1,571
est2=AFE212F,31,646
est3=CFG862Z,604,1243
est4=AFJ201Z,870,1332
est5=AFE212Z,1333,2092
Translated Amino Acid sequence 
ktkqnxtkqnkanqk*rlikkqnktkpnkanqk*rlikkkclieivilki*kin*vvlmr
v*qmgn*tfqkrvnfslts**nliqvqnd*i*whhlsviksiqhfkn*nshikikcqdls
vvkfgtqslifinv*ivklmiivqfvltvlrrinmldidid**lvlmavvivvilvrgkr
rdvvqcmlnvkvkrkvmilr*snhcqrvqss**siff*pey*rifqsidillqlshf*if
*inslmcwvtishy**risfqn*inhh*s*hylkesvaqhr*ycqrqqhhlpqqpir*h*
qkdiflma*vysqvrayqhwrsl*shylslliseipwqcq*lkhslvqlmiqv*lynysl
stvpl*kslklvnlniclilsldhy*mkkmikiklsfyvkvrl*nrf*RKIINIEGKSKL
WGTVYLDAEHGAEDYGLKRGKPL---

---XXXTRHIEYEDQTWVHCFYSEIYLTKYITHAIFDQFKDNEKLITKESQIVNIRDFIF
NHIIDYYKYESVHEVGGNTTSNSDVSGYKNTIRLPFKESDSGDKDIIKWKMGIRDTVIPE
YRVSKQPVSIHIPLHRAFTSAVYFQSIKFNTTPEEVLKILSKKFHIS*clfccy*tci*s
ifnvipifgwyvg*kw*sneesnrklfpckrsk*ysgfifdaiciigngtkdflftifrs
l*imfwfyleviflxxqn
Translated Amino Acid sequence (All Frames) 
Frame A:
ktkqnxtkqnkanqk*rlikkqnktkpnkanqk*rlikkkclieivilki*kin*vvlmr
v*qmgn*tfqkrvnfslts**nliqvqnd*i*whhlsviksiqhfkn*nshikikcqdls
vvkfgtqslifinv*ivklmiivqfvltvlrrinmldidid**lvlmavvivvilvrgkr
rdvvqcmlnvkvkrkvmilr*snhcqrvqss**siff*pey*rifqsidillqlshf*if
*inslmcwvtishy**risfqn*inhh*s*hylkesvaqhr*ycqrqqhhlpqqpir*h*
qkdiflma*vysqvrayqhwrsl*shylslliseipwqcq*lkhslvqlmiqv*lynysl
stvpl*kslklvnlniclilsldhy*mkkmikiklsfyvkvrl*nrf*RKIINIEGKSKL
WGTVYLDAEHGAEDYGLKRGKPL---

---xxxxldi*smkiklgfivfilkfilqsi*rmqfsinlkimkn*sqrkvkllt*eisy
siilltiinmkvymklevillvivmlvvikil*dcllkraivvikil*ngkwvleillfq
niefqnnqfqfiyhyivhlqvpsifnqlnliqhqrkf*kycqknsiyhsvcsaviehvfr
afsmsfqflagmwvrngdpmknqianyfrvkdqnstvdlylmqyvslamepkiffsqfld
rcelcsgfi*rsyfyxnki

Frame B:
kqnktxqsktkqiknsvl*knktkqnqtkqiknsvl*kknv**k**y*kfrk*ikwy**e
ynkweirhfkkesifh*pvnei*ykfktirysgiiyq**kvfnisriktvisrsnvkiyl
w*slelrvsyl*mfrlsn***lcnly*lf*gg*tcwt*i*inswf*wll*lw*f*cvekg
gmlfsac*t*rsrer**y*geatiareyrvhndryffnqningsfnq*iycyn*vtfryf
k*ih*cvg*rfhttnnefhfkiksitinhnit*knq*lsigniakdnniifhnnl*gdid
rktyf*wpksihk*ghtnigevcnliiyly*fqrylgnvns*sillsnl*fkfnctiihc
rqyrfknr*nw*i*iya*yfp*iiik*rr**r*nypst*r*gyrtgfrgrssi*kvkvnf
gepyi*mlnmvlkimv*kevnl*---

---xxxn*tyrv*rsnlgslflf*nlsykvynacnfrsi*r**kinhkgksnc*hkrfhi
qsyy*ll*i*kct*swr*yy****c*wl*kyykiaf*rer*w**ryykmengy*rycysr
i*sfkttsfnsytitsciykcrlfsin*i*yntrgsfknivkkipyiivfvllllnmyle
hfqchsnfwlvcglemviq*riksqiisv*kikivqwiyi*cnmyhwqwnqrfsfhnf*i
vvnyvlvlfrghifxxtks

Frame C:
nktkpnkakqskskiasykktkqnktkqskskiasykkkmfnrnsnienlenklsgines
itngkldiskksqffidqlmkfdtsskrldivasfisnkkystfqelkqsyqdqmsrsic
gkvwnseshiykcldcqiddncaicidcfeedkhvghryrlivgfngccdcgdfsawkke
gccsvhvkregqekgddtkvkqplpestefimidifltriltdlsinrytvtteslldil
nkfidvlgddftllitnfisklnqspliitlpkrisssasvilpktttssstttykvtlt
erhifnglslftskgiptlekfvislfistdfrdtlamsiaeafscptydssltvqlftv
dstalkivetgkfkymlntflrsllneeddkdkiillregevieqvleedhqyrr*k*tl
gnrisrc*twc*rlwfkkr*tfn---

---XXXTRHIEYEDQTWVHCFYSEIYLTKYITHAIFDQFKDNEKLITKESQIVNIRDFIF
NHIIDYYKYESVHEVGGNTTSNSDVSGYKNTIRLPFKESDSGDKDIIKWKMGIRDTVIPE
YRVSKQPVSIHIPLHRAFTSAVYFQSIKFNTTPEEVLKILSKKFHIS*clfccy*tci*s
ifnvipifgwyvg*kw*sneesnrklfpckrsk*ysgfifdaiciigngtkdflftifrs
l*imfwfyleviflxxqn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U07162-1 (Contig-U07162-1Q)
/CSM_Contig/Contig-U07162-1Q.Seq.d
         (2110 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U07162-1 (Contig-U07162-1Q) /CSM_Contig/Conti...  2359  0.0
Contig-U09509-1 (Contig-U09509-1Q) /CSM_Contig/Conti...    44  6e-04
Contig-U12107-1 (Contig-U12107-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U14722-1 (Contig-U14722-1Q) /CSM_Contig/Conti...    38  0.038
Contig-U12039-1 (Contig-U12039-1Q) /CSM_Contig/Conti...    38  0.038
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti...    38  0.038
Contig-U11292-1 (Contig-U11292-1Q) /CSM_Contig/Conti...    38  0.038
Contig-U08720-1 (Contig-U08720-1Q) /CSM_Contig/Conti...    38  0.038
Contig-U06707-1 (Contig-U06707-1Q) /CSM_Contig/Conti...    38  0.038
Contig-U12948-1 (Contig-U12948-1Q) /CSM_Contig/Conti...    36  0.15

>Contig-U07162-1 (Contig-U07162-1Q) /CSM_Contig/Contig-U07162-1Q.Seq.d
          Length = 2110

 Score = 2359 bits (1190), Expect = 0.0
 Identities = 1204/1211 (99%)
 Strand = Plus / Plus

                                                                        
Query: 121  tgtttaatagaaatagtaatattgaaaatttagaaaataaattaagtggtattaatgaga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  tgtttaatagaaatagtaatattgaaaatttagaaaataaattaagtggtattaatgaga 180

                                                                        
Query: 181  gtataacaaatgggaaattagacatttcaaaaaagagtcaatttttcattgaccagttaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  gtataacaaatgggaaattagacatttcaaaaaagagtcaatttttcattgaccagttaa 240

                                                                        
Query: 241  tgaaatttgatacaagttcaaaacgattagatatagtggcatcatttatcagtaataaaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  tgaaatttgatacaagttcaaaacgattagatatagtggcatcatttatcagtaataaaa 300

                                                                        
Query: 301  agtattcaacatttcaagaattaaaacagtcatatcaagatcaaatgtcaagatctatct 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  agtattcaacatttcaagaattaaaacagtcatatcaagatcaaatgtcaagatctatct 360

                                                                        
Query: 361  gtggtaaagtttggaactcagagtctcatatttataaatgtttagattgtcaaattgatg 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  gtggtaaagtttggaactcagagtctcatatttataaatgtttagattgtcaaattgatg 420

                                                                        
Query: 421  ataattgtgcaatttgtattgactgttttgaggaggataaacatgttggacatagatata 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  ataattgtgcaatttgtattgactgttttgaggaggataaacatgttggacatagatata 480

                                                                        
Query: 481  gattaatagttggttttaatggctgttgtgattgtggtgattttagtgcgtggaaaaagg 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  gattaatagttggttttaatggctgttgtgattgtggtgattttagtgcgtggaaaaagg 540

                                                                        
Query: 541  agggatgttgttcagtgcatgttaaacgtgaaggtcaagagaaaggtgatgatactaagg 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  agggatgttgttcagtgcatgttaaacgtgaaggtcaagagaaaggtgatgatactaagg 600

                                                                        
Query: 601  tgaagcaaccattgccagagagtacagagttcataatgatcgatannnnnnnaaccagaa 660
            |||||||||||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 601  tgaagcaaccattgccagagagtacagagttcataatgatcgatatttttttaaccagaa 660

                                                                        
Query: 661  tattaacggatctttcaatcaatagatatactgttacaactgagtcacttttagatattt 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  tattaacggatctttcaatcaatagatatactgttacaactgagtcacttttagatattt 720

                                                                        
Query: 721  taaataaattcattgatgtgttgggtgacgatttcacactactaataacgaatttcattt 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  taaataaattcattgatgtgttgggtgacgatttcacactactaataacgaatttcattt 780

                                                                        
Query: 781  caaaattaaatcaatcaccattaatcataacattacctaaaagaatcagtagctcagcat 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  caaaattaaatcaatcaccattaatcataacattacctaaaagaatcagtagctcagcat 840

                                                                        
Query: 841  cggtaatattgccaaagacaacaacatcatcttccacaacaacctataaggtgacattga 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  cggtaatattgccaaagacaacaacatcatcttccacaacaacctataaggtgacattga 900

                                                                        
Query: 901  cagaaagacatatttttaatggcctaagtctattcacaagtaagggcataccaacattgg 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  cagaaagacatatttttaatggcctaagtctattcacaagtaagggcataccaacattgg 960

                                                                        
Query: 961  agaagtttgtaatctcattatttatctctactgatttcagagataccttggcaatgtcaa 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  agaagtttgtaatctcattatttatctctactgatttcagagataccttggcaatgtcaa 1020

                                                                        
Query: 1021 tagctgaagcattctcttgtccaacttatgattcaagtttaactgtacaattattcactg 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tagctgaagcattctcttgtccaacttatgattcaagtttaactgtacaattattcactg 1080

                                                                        
Query: 1081 tcgacagtaccgctttaaaaatcgttgaaactggtaaatttaaatatatgcttaatactt 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 tcgacagtaccgctttaaaaatcgttgaaactggtaaatttaaatatatgcttaatactt 1140

                                                                        
Query: 1141 tccttagatcattattaaatgaagaagatgataaagataaaattatccttctacgtgaag 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 tccttagatcattattaaatgaagaagatgataaagataaaattatccttctacgtgaag 1200

                                                                        
Query: 1201 gtgaggttatagaacaggttttagaggaagatcatcaatatagaaggtaaaagtaaactt 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gtgaggttatagaacaggttttagaggaagatcatcaatatagaaggtaaaagtaaactt 1260

                                                                        
Query: 1261 tggggaaccgtatatctagatgctgaacatggtgctgaagattatggtttaaaaagaggt 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 tggggaaccgtatatctagatgctgaacatggtgctgaagattatggtttaaaaagaggt 1320

                       
Query: 1321 aaacctttaac 1331
            |||||||||||
Sbjct: 1321 aaacctttaac 1331


 Score = 1451 bits (732), Expect = 0.0
 Identities = 752/759 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1352 aactagacatatagagtatgaagatcaaacttgggttcattgtttttattctgaaattta 1411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1352 aactagacatatagagtatgaagatcaaacttgggttcattgtttttattctgaaattta 1411

                                                                        
Query: 1412 tcttacaaagtatataacgcatgcaattttcgatcaatttaaagataatgaaaaattaat 1471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 tcttacaaagtatataacgcatgcaattttcgatcaatttaaagataatgaaaaattaat 1471

                                                                        
Query: 1472 cacaaaggaaagtcaaattgttaacataagagatttcatattcaatcatattattgacta 1531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 cacaaaggaaagtcaaattgttaacataagagatttcatattcaatcatattattgacta 1531

                                                                        
Query: 1532 ttataaatatgaaagtgtacatgaagttggaggtaatactactagtaatagtgatgttag 1591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 ttataaatatgaaagtgtacatgaagttggaggtaatactactagtaatagtgatgttag 1591

                                                                        
Query: 1592 tggttataaaaatactataagattgccttttaaagagagcgatagtggtgataaagatat 1651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 tggttataaaaatactataagattgccttttaaagagagcgatagtggtgataaagatat 1651

                                                                        
Query: 1652 tataaaatggaaaatgggtattagagatactgttattccagaatatagagtttcaaaaca 1711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 tataaaatggaaaatgggtattagagatactgttattccagaatatagagtttcaaaaca 1711

                                                                        
Query: 1712 accagtttcaattcatataccattacatcgtgcatttacaagtgccgtctattttcaatc 1771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 accagtttcaattcatataccattacatcgtgcatttacaagtgccgtctattttcaatc 1771

                                                                        
Query: 1772 aattaaatttaatacaacaccagaggaagttttaaaaatattgtcnnnnnnnttccatat 1831
            |||||||||||||||||||||||||||||||||||||||||||||       ||||||||
Sbjct: 1772 aattaaatttaatacaacaccagaggaagttttaaaaatattgtcaaaaaaattccatat 1831

                                                                        
Query: 1832 atcatagtgtttgttctgctgttattgaacatgtatttagagcattttcaatgtcattcc 1891
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 atcatagtgtttgttctgctgttattgaacatgtatttagagcattttcaatgtcattcc 1891

                                                                        
Query: 1892 aatttttggctggtatgtgggttagaaatggtgatccaatgaagaatcaaatcgcaaatt 1951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 aatttttggctggtatgtgggttagaaatggtgatccaatgaagaatcaaatcgcaaatt 1951

                                                                        
Query: 1952 atttccgtgtaaaagatcaaaatagtacagtggatttatatttgatgcaatatgtatcat 2011
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 atttccgtgtaaaagatcaaaatagtacagtggatttatatttgatgcaatatgtatcat 2011

                                                                        
Query: 2012 tggcaatggaaccaaagattttcttttcacaatttttagatcgttgtgaattatgttctg 2071
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 tggcaatggaaccaaagattttcttttcacaatttttagatcgttgtgaattatgttctg 2071

                                                   
Query: 2072 gttttatttagaggtcatatttttatnanaacaaaatca 2110
            |||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 gttttatttagaggtcatatttttatnanaacaaaatca 2110


>Contig-U09509-1 (Contig-U09509-1Q) /CSM_Contig/Contig-U09509-1Q.Seq.d
          Length = 906

 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 140 tattgaaaatttagaaaataaattaa 165
           ||||||| ||||||||||||||||||
Sbjct: 97  tattgaagatttagaaaataaattaa 122


>Contig-U12107-1 (Contig-U12107-1Q) /CSM_Contig/Contig-U12107-1Q.Seq.d
          Length = 1441

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 308 aacatttcaagaattaaaaca 328
           |||||||||||||||||||||
Sbjct: 452 aacatttcaagaattaaaaca 472


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,453
Number of Sequences: 6905
Number of extensions: 27453
Number of successful extensions: 3122
Number of sequences better than 10.0: 336
length of query: 2110
length of database: 5,674,871
effective HSP length: 16
effective length of query: 2094
effective length of database: 5,564,391
effective search space: 11651834754
effective search space used: 11651834754
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U07162-1 (Contig-U07162-1Q) /CSM_Contig/Contig-U07162-1Q.Seq.d
         (2110 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ372869) Dictyostelium discoideum cDNA clone:ddc14l16, 3' ...  1154   0.0    2
(BJ324993) Dictyostelium discoideum cDNA clone:dda9g04, 5' e...  1041   0.0    1
(BJ341996) Dictyostelium discoideum cDNA clone:dda9g04, 3' e...   922   0.0    2
(BJ344353) Dictyostelium discoideum cDNA clone:dda19a02, 3' ...   910   0.0    1
(BJ359436) Dictyostelium discoideum cDNA clone:ddc14l16, 5' ...   876   0.0    1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.003  20
(EJ931044) 1093018806847 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.015  2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    36   0.023  11
(EJ933577) 1093018817697 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.056  2
(AF274444) Carsonella ruddii ribosomal protein L11 (rpL11), ...    42   0.059  6
(AF267225) Candidatus Carsonella ruddii natural-host Tainary...    38   0.063  3
(AL844509) Plasmodium falciparum chromosome 13.                    36   0.13   23
(AC181105) Strongylocentrotus purpuratus clone R3-3042E01, W...    34   0.20   2
(ER578634) 1093015824424 Global-Ocean-Sampling_GS-36-01-01-2...    40   0.26   2
(AQ688710) nbxb0078M15r CUGI Rice BAC Library Oryza sativa J...    32   0.29   4
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         36   0.32   15
(AC110691) Rattus norvegicus clone CH230-287M13, *** SEQUENC...    50   0.35   1
(AC096141) Rattus norvegicus clone CH230-10P5, *** SEQUENCIN...    50   0.35   1
(ES596761) 000001604452_B02.ab1 Eucalyptus globulus under lo...    50   0.35   1
(CP000771) Fervidobacterium nodosum Rt17-B1, complete genome.      50   0.35   1
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.39   11
(DH446545) Macropus eugenii DNA with T7 primer, fosmid clone...    36   0.66   3
(AC009692) Homo sapiens chromosome 8 clone RP11-111D13 map 8...    46   0.90   6
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    36   0.90   11
(AC226160) Homo sapiens FOSMID clone ABC12-49287400C23 from ...    40   1.3    4
(DQ398104) Helicosporidium sp. ex Simulium jonesii plastid, ...    48   1.4    1
(CU570843) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.4    1
(CU463881) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   1.4    1
(AC174336) Medicago truncatula chromosome 8 clone mth2-157o1...    48   1.4    1
(ER615795) 1093017120155 Global-Ocean-Sampling_GS-36-01-01-2...    48   1.4    1
(EI400783) MUGQ_CH252P216H22Sp6_CN354_089 CHORI-252 Vervet M...    48   1.4    1
(DX929194) MUGQ_CH252P081C23Sp6_CP47_046 CHORI-252 Vervet Mo...    48   1.4    1
(BH734270) BOMAK11TR BO_2_3_KB Brassica oleracea genomic clo...    48   1.4    1
(FF577951) TTED747THB Tetrahymena thermophila conjugation cD...    34   1.5    4
(CX579880) TTE00026123 Amplicon Express - Conjugative Form T...    34   1.5    4
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    38   1.8    12
(BZ495234) BONDT53TF BO_1.6_2_KB_tot Brassica oleracea genom...    46   2.4    2
(AC195452) Glycine tomentella clone gtt1-5b15, complete sequ...    34   2.7    2
(AJ531193) Arabidopsis thaliana T-DNA flanking sequence, lef...    44   2.8    2
(AY375291) Buchnera aphidicola (Chaitophorus populeti) phosp...    40   3.5    3
(Y11783) R.prowazekii murF, murE mfd genes.                        40   3.5    2
(BZ023789) oei71d02.g1 B.oleracea002 Brassica oleracea genom...    34   3.6    2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   3.9    16
(AM443920) Vitis vinifera contig VV78X170895.4, whole genome...    42   4.7    3
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    42   5.0    13
(AE002153) Ureaplasma parvum serovar 3 str. ATCC 700970 sect...    34   5.2    5
(AC200644) MACACA MULATTA BAC clone CH250-521P20 from chromo...    46   5.4    1
(DI091479) Enterococcus faecalis polynucleotides and polypep...    46   5.4    1
(BD193656) Enterococcus faecialis polynucleotides and polype...    46   5.4    1
(AR397096) Sequence 3111 from patent US 6617156.                   46   5.4    1
(AR348791) Sequence 3402 from patent US 6583275.                   46   5.4    1
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    46   5.4    1
(EU350953) Homo sapiens catenin (cadherin-associated protein...    46   5.4    1
(AP005660) Homo sapiens genomic DNA, chromosome 8q23, clone:...    46   5.4    1
(AL356094) Human DNA sequence from clone RP11-64I5 on chromo...    46   5.4    1
(AC127460) Homo sapiens chromosome 5 clone RP11-689B23, comp...    46   5.4    1
(AC113390) Homo sapiens chromosome 5 clone RP11-360C3, compl...    46   5.4    1
(AC108860) Homo sapiens chromosome 8, clone RP11-22C11, comp...    46   5.4    1
(AC084253) Homo sapiens chromosome 8, clone RP11-498C11, com...    46   5.4    1
(AC150764) Bos taurus clone CH240-274I17, WORKING DRAFT SEQU...    46   5.4    1
(AC117873) Rattus norvegicus clone CH230-33K20, *** SEQUENCI...    46   5.4    1
(AC107583) Rattus norvegicus clone CH230-150B10, *** SEQUENC...    46   5.4    1
(AC096991) Rattus norvegicus clone CH230-136O9, *** SEQUENCI...    46   5.4    1
(AC231728) Monodelphis domestica clone VMRC18-455F9, WORKING...    46   5.4    1
(AC224276) Bos taurus clone CH240-490L8, WORKING DRAFT SEQUE...    46   5.4    1
(AC180393) Strongylocentrotus purpuratus clone R3-3106J15, W...    46   5.4    1
(AC179896) Strongylocentrotus purpuratus clone R3-1003P23, W...    46   5.4    1
(AC179289) Strongylocentrotus purpuratus clone R3-1105G4, WO...    46   5.4    1
(AC176871) Strongylocentrotus purpuratus clone R3-31E23, WOR...    46   5.4    1
(BH453673) BOHFB10TR BOHF Brassica oleracea genomic clone BO...    46   5.4    1
(ER639215) SB_BBc193-A14.R SB_BBc Sorghum bicolor genomic 3'...    46   5.4    1
(ER546509) 1093016183032 Global-Ocean-Sampling_GS-35-01-01-1...    46   5.4    1
(ER534538) 1093015812106 Global-Ocean-Sampling_GS-35-01-01-1...    46   5.4    1
(EJ453868) 1093015489429 Global-Ocean-Sampling_GS-28-01-01-1...    46   5.4    1
(EI944303) akm3al56r Km3-3010m-Ionian Sea marine metagenome ...    46   5.4    1
(ED725085) GM_WBb0079L05.f GM_WBb Glycine max genomic clone ...    46   5.4    1
(AG186708) Homo sapiens DNA, chromosome 8q23, forward end of...    46   5.4    1
(EB258841) CNSN01-C-009152-501 Normalized CNS library (juven...    46   5.4    1
(DV962166) GC00135 Gracilaria changii cDNA library Gracilari...    46   5.4    1
(CV517038) 0048P0018Z_H06_T7 Mimulus guttatus library 1 Mimu...    46   5.4    1
(CV515249) 0048P0008Z_F08_T7 Mimulus guttatus library 1 Mimu...    46   5.4    1
(BB971892) Plasmodium berghei strain ANKA cDNA clone:OK00157...    46   5.4    1
(AW759149) sl37c12.y1 Gm-c1027 Glycine max cDNA clone GENOME...    46   5.4    1
(AM180355) Clostridium difficile 630 complete genome.              46   5.4    1
(AE016830) Enterococcus faecalis V583, complete genome.            46   5.4    1
(AC188424) Pan troglodytes BAC clone CH251-377L23 from chrom...    32   5.6    11
(AC157454) Monodelphis domestica clone VMRC6-101N7, WORKING ...    40   6.0    5
(AC162863) Mus musculus chromosome 15, clone RP23-276I6, com...    36   6.4    6
(BH455822) BOGIX88TF BOGI Brassica oleracea genomic clone BO...    36   6.8    2
(ER534909) 1093015820780 Global-Ocean-Sampling_GS-35-01-01-1...    44   7.1    2
(AC221981) Bos taurus clone CH240-376G17, WORKING DRAFT SEQU...    38   7.2    9
(BX842611) Mouse DNA sequence from clone RP23-57L17 on chrom...    42   7.2    6
(AP003882) Oryza sativa Japonica Group genomic DNA, chromoso...    38   7.3    5
(CU694629) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.4    11
(AM462809) Vitis vinifera contig VV78X123605.37, whole genom...    34   7.4    6
(FD495800) Ltu01b_143_C12_C012.g1 Liriodendron Flower Bud Li...    36   7.6    2
(EJ994936) 1093023082019 Global-Ocean-Sampling_GS-30-02-01-1...    38   7.6    2
(AC004260) Arabidopsis thaliana chromosome I BAC T14N5 genom...    40   7.6    4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    40   7.9    14
(BJ397039) Dictyostelium discoideum cDNA clone:dds44g24, 5' ...    42   7.9    2

>(BJ372869) Dictyostelium discoideum cDNA clone:ddc14l16, 3' end,
            single read.
          Length = 640

 Score = 1154 bits (582), Expect(2) = 0.0
 Identities = 582/582 (100%)
 Strand = Plus / Minus


Query: 653  aaccagaatattaacggatctttcaatcaatagatatactgttacaactgagtcactttt 712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591  aaccagaatattaacggatctttcaatcaatagatatactgttacaactgagtcactttt 532


Query: 713  agatattttaaataaattcattgatgtgttgggtgacgatttcacactactaataacgaa 772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531  agatattttaaataaattcattgatgtgttgggtgacgatttcacactactaataacgaa 472


Query: 773  tttcatttcaaaattaaatcaatcaccattaatcataacattacctaaaagaatcagtag 832
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  tttcatttcaaaattaaatcaatcaccattaatcataacattacctaaaagaatcagtag 412


Query: 833  ctcagcatcggtaatattgccaaagacaacaacatcatcttccacaacaacctataaggt 892
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411  ctcagcatcggtaatattgccaaagacaacaacatcatcttccacaacaacctataaggt 352


Query: 893  gacattgacagaaagacatatttttaatggcctaagtctattcacaagtaagggcatacc 952
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351  gacattgacagaaagacatatttttaatggcctaagtctattcacaagtaagggcatacc 292


Query: 953  aacattggagaagtttgtaatctcattatttatctctactgatttcagagataccttggc 1012
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291  aacattggagaagtttgtaatctcattatttatctctactgatttcagagataccttggc 232


Query: 1013 aatgtcaatagctgaagcattctcttgtccaacttatgattcaagtttaactgtacaatt 1072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231  aatgtcaatagctgaagcattctcttgtccaacttatgattcaagtttaactgtacaatt 172


Query: 1073 attcactgtcgacagtaccgctttaaaaatcgttgaaactggtaaatttaaatatatgct 1132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171  attcactgtcgacagtaccgctttaaaaatcgttgaaactggtaaatttaaatatatgct 112


Query: 1133 taatactttccttagatcattattaaatgaagaagatgataaagataaaattatccttct 1192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111  taatactttccttagatcattattaaatgaagaagatgataaagataaaattatccttct 52


Query: 1193 acgtgaaggtgaggttatagaacaggttttagaggaagatca 1234
            ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51   acgtgaaggtgaggttatagaacaggttttagaggaagatca 10

 Score = 83.8 bits (42), Expect(2) = 0.0
 Identities = 42/42 (100%)
 Strand = Plus / Minus


Query: 604 agcaaccattgccagagagtacagagttcataatgatcgata 645
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 agcaaccattgccagagagtacagagttcataatgatcgata 599

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,487,718,223
Number of extensions: 148023606
Number of successful extensions: 12167075
Number of sequences better than 10.0: 121
Length of query: 2110
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 2086
Effective length of database: 97,308,875,965
Effective search space: 202986315262990
Effective search space used: 202986315262990
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U07162-1 (Contig-U07162-1Q) /CSM_Contig/Contig-U07162-1Q.Seq.d
         (2110 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008207_285(AP008207|pid:none) Oryza sativa (japonica cultivar-...    93   4e-17
AL162874_6(AL162874|pid:none) Arabidopsis thaliana DNA chromosom...    90   3e-16
AY094815_1(AY094815|pid:none) Drosophila melanogaster LD31957 fu...    84   3e-14
CR940353_474(CR940353|pid:none) Theileria annulata strain Ankara...    82   8e-14
CU633438_249(CU633438|pid:none) Podospora anserina genomic DNA c...    82   1e-13
CT005248_87(CT005248|pid:none) Leishmania major strain Friedlin,...    80   3e-13
AM502227_79(AM502227|pid:none) Leishmania infantum chromosome 9.       78   1e-12
FN357904_3(FN357904|pid:none) Schistosoma mansoni genome sequenc...    78   1e-12
AM270222_48(AM270222|pid:none) Aspergillus niger contig An11c005...    76   4e-12
(O13731) RecName: Full=E3 ubiquitin-protein ligase ubr11;       ...    75   1e-11
(O70481) RecName: Full=E3 ubiquitin-protein ligase UBR1;        ...    74   2e-11
AL844548_1(AL844548|pid:none) Mouse DNA sequence from clone RP23...    74   2e-11
AK166885_1(AK166885|pid:none) Mus musculus blastocyst blastocyst...    74   2e-11
BC090969_1(BC090969|pid:none) Mus musculus ubiquitin protein lig...    74   2e-11
AK292516_1(AK292516|pid:none) Homo sapiens cDNA FLJ77190 partial...    74   2e-11
(Q8IWV7) RecName: Full=E3 ubiquitin-protein ligase UBR1;        ...    74   2e-11
AF525401_1(AF525401|pid:none) Homo sapiens UBR1 E3a ligase mRNA,...    74   2e-11
AK302489_1(AK302489|pid:none) Homo sapiens cDNA FLJ52107 complet...    74   2e-11
BC100240_1(BC100240|pid:none) Xenopus laevis hypothetical protei...    74   3e-11
CR382139_793(CR382139|pid:none) Debaryomyces hansenii strain CBS...    74   3e-11
CU928166_145(CU928166|pid:none) Kluyveromyces thermotolerans str...    72   1e-10
AE014188_321(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    71   2e-10
AL049843_4(AL049843|pid:none) Human DNA sequence from clone RP3-...    71   2e-10
AM494946_82(AM494946|pid:none) Leishmania braziliensis chromosom...    71   2e-10
AK147445_1(AK147445|pid:none) Mus musculus cDNA, RIKEN full-leng...    70   3e-10
(O60152) RecName: Full=E3 ubiquitin-protein ligase ubr1;        ...    69   5e-10
AY280958_1(AY280958|pid:none) Mus musculus ubiquitin ligase UBR2...    69   5e-10
AF061554_1(AF061554|pid:none) Kluyveromyces lactis ubiquitin-pro...    68   2e-09
CP001576_520(CP001576|pid:none) Micromonas sp. RCC299 chromosome...    67   3e-09
U40029_15(U40029|pid:none) Caenorhabditis elegans cosmid F10G7, ...    67   3e-09
U40029_13(U40029|pid:none) Caenorhabditis elegans cosmid F10G7, ...    67   3e-09
AE014298_1138(AE014298|pid:none) Drosophila melanogaster chromos...    65   7e-09
CR382139_792(CR382139|pid:none) Debaryomyces hansenii strain CBS...    63   4e-08
CU928174_452(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    61   1e-07
AE017345_368(AE017345|pid:none) Cryptococcus neoformans var. neo...    60   2e-07
AC116979_19(AC116979|pid:none) Dictyostelium discoideum chromoso...    60   3e-07
(Q6ZT12) RecName: Full=E3 ubiquitin-protein ligase UBR3;        ...    60   3e-07
DQ924536_1(DQ924536|pid:none) Mus musculus ubiquitin ligase (Ubr...    60   4e-07
(Q5U430) RecName: Full=E3 ubiquitin-protein ligase UBR3;        ...    60   4e-07
CR382128_141(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    59   5e-07
FN357354_52(FN357354|pid:none) Schistosoma mansoni genome sequen...    58   2e-06
CR382126_663(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    54   3e-05
CR380950_145(CR380950|pid:none) Candida glabrata strain CBS138 c...    52   9e-05
AK122254_1(AK122254|pid:none) Mus musculus premature mRNA for mK...    43   0.003
AK083320_1(AK083320|pid:none) Mus musculus 2 days neonate thymus...    43   0.003
AK304070_1(AK304070|pid:none) Homo sapiens cDNA FLJ55442 complet...    42   0.005
AB002347_1(AB002347|pid:none) Human mRNA for KIAA0349 gene, part...    42   0.005
AK125795_1(AK125795|pid:none) Homo sapiens cDNA FLJ43807 fis, cl...    42   0.005
CU928166_144(CU928166|pid:none) Kluyveromyces thermotolerans str...    43   0.040
AE016814_40(AE016814|pid:none) Ashbya gossypii (= Eremothecium g...    43   0.052
BC031403_1(BC031403|pid:none) Mus musculus ubiquitin protein lig...    43   0.052
AX965629_1(AX965629|pid:none) Sequence 57 from Patent EP1375515....    42   0.068
AK037622_1(AK037622|pid:none) Mus musculus 16 days neonate thymu...    42   0.12
AC092641_1(AC092641|pid:none) Homo sapiens BAC clone RP11-389F18...    39   0.75
AK303062_1(AK303062|pid:none) Homo sapiens cDNA FLJ53501 complet...    39   0.75
BC157930_1(BC157930|pid:none) Mus musculus ubiquitin protein lig...    39   0.75
BC078396_1(BC078396|pid:none) Danio rerio ubiquitin protein liga...    39   0.75
BC113010_1(BC113010|pid:none) Homo sapiens zinc finger protein 6...    39   0.75
BC124477_1(BC124477|pid:none) Danio rerio ubiquitin protein liga...    39   0.75
BT071908_1(BT071908|pid:none) Salmo salar clone ssal-rgf-503-163...    39   0.75
AK128490_1(AK128490|pid:none) Homo sapiens cDNA FLJ46640 fis, cl...    39   0.75
CR861254_1(CR861254|pid:none) Pongo abelii mRNA; cDNA DKFZp459P0...    39   0.75
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n...    39   0.98
AP009049_631(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ...    38   1.7
U64849_1(U64849|pid:none) Caenorhabditis elegans cosmid K04A8, c...    37   3.7
CP000589_212(CP000589|pid:none) Ostreococcus lucimarinus CCE9901...    36   6.3
CP000013_451(CP000013|pid:none) Borrelia garinii PBi, complete g...    36   6.3
AY518894_1(AY518894|pid:none) Human group 1 coronavirus associat...    35   8.3
DQ445911_1(DQ445911|pid:none) Human coronavirus NL63 isolate Ams...    35   8.3
CP000049_802(CP000049|pid:none) Borrelia turicatae 91E135, compl...    35   8.3
CP001485_2056(CP001485|pid:none) Vibrio cholerae MJ-1236 chromos...    35   8.3
DQ445912_1(DQ445912|pid:none) Human coronavirus NL63 isolate Ams...    35   8.3
(P0C6U6) RecName: Full=Replicase polyprotein 1a;          Short=...    35   8.3
(P0C6X5) RecName: Full=Replicase polyprotein 1ab;          Short...    35   8.3
AE003852_1236(AE003852|pid:none) Vibrio cholerae O1 biovar eltor...    35   8.3

>AP008207_285(AP008207|pid:none) Oryza sativa (japonica
           cultivar-group) genomic DNA, chromosome 1.
          Length = 1980

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 5/128 (3%)
 Frame = +3

Query: 252 TSSKRLDIVASFI-----SNKKYSTFQELKQSYQDQMSRSICGKVWNSESHIYKCLDCQI 416
           ++S+  D + S++     +N+ ++   +L++S   +  R++CG VW      Y+C  C+
Sbjct: 83  SNSEACDEILSWLQWLMFNNEPHAMLDDLERSTAGE--RAVCGSVWGQNDLAYRCRTCEH 140

Query: 417 DDNCAICIDCFEEDKHVGHRYRLIVGFNGCCDCGDFSAWKKEGCCSVHVKREGQEKGDDT 596
           D  CAIC+ CF+   H  H Y ++    GCCDCGD +AWK+EG CS H   +G E+
Sbjct: 141 DPTCAICVPCFQNGNHKDHDYSIMYTGGGCCDCGDTTAWKREGFCSRH---KGAEQ---- 193

Query: 597 KVKQPLPE 620
              +PLPE
Sbjct: 194 --IKPLPE 199

 Score = 36.2 bits (82), Expect = 4.8
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +1

Query: 1834 HSVCSAVIEHVFRAFSMSFQFLAGMWVRNGDPMKNQIANYFRVK--DQNSTVDLYLMQYV 2007
            +   S V+EH  R      Q  AGMW +NGD        Y  V+  +Q    DL+L+Q
Sbjct: 757  YGFASIVMEHPLRLRVFCAQVRAGMWRKNGDAAILSAEWYRSVQWLEQGLESDLFLLQCC 816

Query: 2008 SLAMEPKIFFSQFLDR 2055
            +    P++F     +R
Sbjct: 817  AALSSPELFVKTIQER 832

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 2,900,514,627
Number of extensions: 56827483
Number of successful extensions: 136567
Number of sequences better than 10.0: 75
Number of HSP's gapped: 136400
Number of HSP's successfully gapped: 129
Length of query: 703
Length of database: 1,040,966,779
Length adjustment: 136
Effective length of query: 567
Effective length of database: 605,184,019
Effective search space: 343139338773
Effective search space used: 343139338773
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U07162-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0