Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U07120-1 (Contig-U07120-1Q) /CSM_Contig/Contig-U07120-1Q.Seq.d (433 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU271292) Dictyostelium discoideum vegetative cDNA clone:VS... 252 5e-78 2 (AC114258) Dictyostelium discoideum chromosome 2 map complem... 149 3e-45 2 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 111 2e-20 1 (AU263454) Dictyostelium discoideum vegetative cDNA clone:VS... 111 2e-20 1 (AU267570) Dictyostelium discoideum vegetative cDNA clone:VS... 80 7e-11 1 (AU266152) Dictyostelium discoideum vegetative cDNA clone:VS... 68 3e-07 1 (CP000904) Bacillus weihenstephanensis KBAB4 plasmid pBWB401... 46 3e-05 3 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 44 6e-05 5 (ER311374) 1092343796084 Global-Ocean-Sampling_GS-34-01-01-1... 54 0.004 1 (AL731814) Mouse DNA sequence from clone RP23-109J20 on chro... 44 0.006 2 (AP009789) Lotus japonicus genomic DNA, chromosome 6, clone:... 52 0.017 1 (BX897689) Zebrafish DNA sequence from clone DKEY-40N8. 42 0.025 4 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.034 5 (AC170212) Bos taurus clone CH240-256G1, WORKING DRAFT SEQUE... 46 0.036 5 (EA107545) Sequence 1174 from patent US 7196245. 50 0.065 1 (CX709146) gmrtDrNS01_04-D_M13R_B04_030.s4 Water stressed 48... 50 0.065 1 (CX708942) gmrtDrNS01_01-D_T3_H03_017.s0 Water stressed gmrt... 50 0.065 1 (CK722917) jab46b10.y2 Anolis sagrei limb bud 2 Anolis sagre... 50 0.065 1 (CA801526) sau07a07.y2 Gm-c1062 Glycine max cDNA clone SOYBE... 50 0.065 1 (EV422717) 210805123 NGP Nasonia giraulti cDNA clone 127A15 ... 50 0.065 1 (CW103945) 104_472_11012164_116_34431_002 Sorghum methylatio... 38 0.078 2 (AC012745) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 38 0.099 4 (U87145) Toxoplasma gondii chloroplast, complete genome. 44 0.11 4 (BX323984) Zebrafish DNA sequence from clone CH211-157H5 in ... 36 0.15 2 (AC202214) Acyrthosiphon pisum BAC VMRC38-20-A9 (Benaroya R... 38 0.17 5 (CU062487) Zebrafish DNA sequence from clone DKEY-254E3 in l... 40 0.25 4 (EU739202) Acanthisitta chloris fibrinogen beta chain (FGB) ... 48 0.26 1 (AC225757) Procavia capensis clone CH280-144D6, WORKING DRAF... 48 0.26 1 (AC169464) Oryctolagus cuniculus clone LB1-38F2, WORKING DRA... 48 0.26 1 (CW434911) fsbb001f150n08f0 Sorghum methylation filtered lib... 48 0.26 1 (CU914683) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.29 4 (AC099742) Papio anubis clone RP41-167P22, complete sequence. 34 0.33 6 (AC206794) Pongo abelii BAC clone CH276-246H3 from chromosom... 42 0.33 2 (AC105576) Rattus norvegicus clone CH230-236F15, WORKING DRA... 44 0.41 2 (CU302309) Zebrafish DNA sequence from clone DKEY-80C17 in l... 40 0.44 4 (CT827827) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.55 2 (BS000594) Pan troglodytes chromosome Y clone:PTB-031N07, co... 46 0.55 2 (CU855775) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.57 2 (AC116032) Dictyostelium discoideum chromosome 2 map 4158743... 34 0.61 2 (AC159147) Medicago truncatula clone mth2-135h16, WORKING DR... 40 0.63 3 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 32 0.66 6 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 46 0.70 5 (AC147278) Pan troglodytes chromosome UNK clone RP43-102C9, ... 46 0.79 2 (AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 36 0.84 4 (AC121589) Mus musculus BAC clone RP23-281G14 from chromosom... 42 0.89 4 (DW148125) CLVX13157.b1_J01.ab1 CLV(XYZ) lettuce virosa Lact... 38 0.94 2 (CR095926) Forward strand read from insert in 5'HPRT inserti... 30 0.95 3 (ET082221) QM0AAC3BC11RM1 CCH3 Citrus clementina genomic clo... 34 0.97 3 (AC193121) Homo sapiens chromosome 2 clone WI2-1419M8, compl... 42 1.0 2 (EU739336) Turdus falklandii fibrinogen beta chain (FGB) gen... 46 1.0 1 (EU739333) Tockus camurus fibrinogen beta chain (FGB) gene, ... 46 1.0 1 (EU739219) Bucorvus abyssinicus fibrinogen beta chain (FGB) ... 46 1.0 1 (CR853282) Zebrafish DNA sequence from clone DKEY-175A17 in ... 46 1.0 1 (BV073247) S212P60193FB9.T0 CZECHII/Ei Mus musculus STS geno... 46 1.0 1 (AC158342) Mus musculus chromosome 1, clone RP23-12H12, comp... 46 1.0 1 (AC134788) Mus musculus chromosome 1, clone RP24-482A14, com... 46 1.0 1 (AC127283) Mus musculus BAC clone RP23-323E20 from chromosom... 46 1.0 1 (AC118540) Mus musculus strain 129/SvJ clone mgs1-169d12 map... 46 1.0 1 (AC142308) Pan troglodytes BAC clone RP43-135J9 from chromos... 46 1.0 1 (AP006852) Candida albicans genomic DNA, chromosome 7, compl... 46 1.0 1 (AC010151) Homo sapiens BAC clone RP11-508P10 from Y, comple... 46 1.0 1 (AC130145) Rattus norvegicus clone CH230-147G14, *** SEQUENC... 46 1.0 1 (AC113698) Rattus norvegicus clone CH230-99I19, WORKING DRAF... 46 1.0 1 (AC102522) Mus musculus chromosome 1 clone RP24-141M1 map 1,... 46 1.0 1 (AC094818) Rattus norvegicus clone CH230-5J9, WORKING DRAFT ... 46 1.0 1 (AC200942) Strongylocentrotus purpuratus clone R3-1035N13, W... 46 1.0 1 (AC184324) Strongylocentrotus purpuratus clone R3-1035K3, WO... 46 1.0 1 (AC180269) Strongylocentrotus purpuratus clone R3-3123J22, W... 46 1.0 1 (AC179825) Strongylocentrotus purpuratus clone R3-1012K7, WO... 46 1.0 1 (AC179478) Strongylocentrotus purpuratus clone R3-1035O5, WO... 46 1.0 1 (AC177145) Strongylocentrotus purpuratus clone R3-1035H2, WO... 46 1.0 1 (AC169560) Bos taurus clone CH240-220K24, WORKING DRAFT SEQU... 46 1.0 1 (AZ464456) 1M0273P17R Mouse 10kb plasmid UUGC1M library Mus ... 46 1.0 1 (ET108942) QM0AAC16CC01RM1 CCH3 Citrus clementina genomic cl... 46 1.0 1 (ET108775) QM0AAC16BC01RM1 CCH3 Citrus clementina genomic cl... 46 1.0 1 (EJ429842) 1093015248206 Global-Ocean-Sampling_GS-28-01-01-1... 46 1.0 1 (AL446132) Paramecium tetraurelia sequence R13E06r of the en... 46 1.0 1 (AG279606) Mus musculus molossinus DNA, clone:MSMg01-050I23.... 46 1.0 1 (CB931631) ri61b08.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo... 46 1.0 1 (CB930131) ri71c01.y1 Meloidogyne chitwoodi J2 pDNR LIB Melo... 46 1.0 1 (BY934594) Bombyx mori cDNA, clone:E_EL_vg4M_08P16_R_0, 3' e... 46 1.0 1 (BY934562) Bombyx mori cDNA, clone:E_EL_vg4M_08O06_R_0, 3' e... 46 1.0 1 (BY934534) Bombyx mori cDNA, clone:E_EL_vg4M_08M19_R_0, 3' e... 46 1.0 1 (BY934389) Bombyx mori cDNA, clone:E_EL_vg4M_08F22_R_0, 3' e... 46 1.0 1 (BY934380) Bombyx mori cDNA, clone:E_EL_vg4M_08F11_R_0, 3' e... 46 1.0 1 (BY934378) Bombyx mori cDNA, clone:E_EL_vg4M_08F08_R_0, 3' e... 46 1.0 1 (BY934226) Bombyx mori cDNA, clone:E_EL_vg4M_07N24_R_0, 3' e... 46 1.0 1 (BY934198) Bombyx mori cDNA, clone:E_EL_vg4M_07M09_R_0, 3' e... 46 1.0 1 (BY934155) Bombyx mori cDNA, clone:E_EL_vg4M_07J23_R_0, 3' e... 46 1.0 1 (BY934152) Bombyx mori cDNA, clone:E_EL_vg4M_07J19_R_0, 3' e... 46 1.0 1 (BY934140) Bombyx mori cDNA, clone:E_EL_vg4M_07J06_R_0, 3' e... 46 1.0 1 (BY934110) Bombyx mori cDNA, clone:E_EL_vg4M_07H17_R_0, 3' e... 46 1.0 1 (BY934062) Bombyx mori cDNA, clone:E_EL_vg4M_07F02_R_0, 3' e... 46 1.0 1 (BY934002) Bombyx mori cDNA, clone:E_EL_vg4M_07B22_R_0, 3' e... 46 1.0 1 (BY933917) Bombyx mori cDNA, clone:E_EL_vg4M_06N14_R_0, 3' e... 46 1.0 1 (BY933907) Bombyx mori cDNA, clone:E_EL_vg4M_06N01_R_0, 3' e... 46 1.0 1 (BY933775) Bombyx mori cDNA, clone:E_EL_vg4M_06G09_R_0, 3' e... 46 1.0 1 (BY933700) Bombyx mori cDNA, clone:E_EL_vg4M_06C02_R_0, 3' e... 46 1.0 1 (BY933684) Bombyx mori cDNA, clone:E_EL_vg4M_06B09_R_0, 3' e... 46 1.0 1 (BY933671) Bombyx mori cDNA, clone:E_EL_vg4M_06A19_R_0, 3' e... 46 1.0 1
>(AU271292) Dictyostelium discoideum vegetative cDNA clone:VSK494, 3' end single read. Length = 434
Score = 252 bits (127), Expect(2) = 5e-78 Identities = 130/130 (100%) Strand = Plus / Plus
Query: 304 caatactatttagtttaaaaaataattttgtatataaacctgtaaatattaagtcaaatg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 304 caatactatttagtttaaaaaataattttgtatataaacctgtaaatattaagtcaaatg 363
Query: 364 aacaacaacaacaacttttattactatattaattaatattttaacaaataaatgttaata 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364 aacaacaacaacaacttttattactatattaattaatattttaacaaataaatgttaata 423
Query: 424 nttttaaaaa 433 |||||||||| Sbjct: 424 nttttaaaaa 433
Score = 75.8 bits (38), Expect(2) = 5e-78 Identities = 38/38 (100%) Strand = Plus / Plus
Query: 152 tattttaaattttaatgggtttgatcaattacttacat 189 |||||||||||||||||||||||||||||||||||||| Sbjct: 152 tattttaaattttaatgggtttgatcaattacttacat 189
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 318,483,643 Number of extensions: 30143243 Number of successful extensions: 4747339 Number of sequences better than 10.0: 443 Length of query: 433 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 410 Effective length of database: 93,106,754,628 Effective search space: 38173769397480 Effective search space used: 38173769397480 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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