>Contig-U07117-1 (Contig-U07117-1Q) /CSM_Contig/Contig-U07117-1Q.Seq.d
TTTTTTTTTTAAAAAACCTTTTTTTTTTTTAAACCAANNAAAAAAANNNG
NTTTTTNAAAAATTAAAAAANTTAAAACCCNNTTTTTTTTCCCNAACCCC
AAAAAAAANCCCCAAAAAAAAA

est1=VSK483F,1,123

FFFKKPFFFLNQXKKXXFXKIKKXKTXFFFPNPKKXPQKK

Frame A:
fff*ktffffkpxkkxxfxkn*kx*npxffpxpqkkxpkk


Frame B:
FFFKKPFFFLNQXKKXXFXKIKKXKTXFFFPNPKKXPQKK


Frame C:
fflknlfff*txxkxxxfxklkxlkpxffsxtpkkxpkkk

Query= Contig-U07117-1 (Contig-U07117-1Q)
/CSM_Contig/Contig-U07117-1Q.Seq.d
         (122 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U07117-1 (Contig-U07117-1Q) /CSM_Contig/Conti...    46  8e-06
Contig-U01304-1 (Contig-U01304-1Q) /CSM_Contig/Conti...    40  5e-04
Contig-U11535-1 (Contig-U11535-1Q) /CSM_Contig/Conti...    36  0.008
Contig-U14610-1 (Contig-U14610-1Q) /CSM_Contig/Conti...    34  0.031
Contig-U13595-1 (Contig-U13595-1Q) /CSM_Contig/Conti...    34  0.031
Contig-U12924-1 (Contig-U12924-1Q) /CSM_Contig/Conti...    34  0.031
Contig-U12594-1 (Contig-U12594-1Q) /CSM_Contig/Conti...    34  0.031
Contig-U11181-1 (Contig-U11181-1Q) /CSM_Contig/Conti...    34  0.031
Contig-U11164-1 (Contig-U11164-1Q) /CSM_Contig/Conti...    34  0.031

>Contig-U07117-1 (Contig-U07117-1Q) /CSM_Contig/Contig-U07117-1Q.Seq.d
          Length = 122

 Score = 46.1 bits (23), Expect = 8e-06
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 52 tttttnaaaaattaaaaaanttaaaaccc 80
          |||||||||||||||||||||||||||||
Sbjct: 52 tttttnaaaaattaaaaaanttaaaaccc 80


>Contig-U01304-1 (Contig-U01304-1Q) /CSM_Contig/Contig-U01304-1Q.Seq.d
          Length = 474

 Score = 40.1 bits (20), Expect = 5e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 52  tttttnaaaaattaaaaaanttaaaa 77
           ||||| ||||||||||||||||||||
Sbjct: 305 ttttttaaaaattaaaaaanttaaaa 330


>Contig-U11535-1 (Contig-U11535-1Q) /CSM_Contig/Contig-U11535-1Q.Seq.d
          Length = 1306

 Score = 36.2 bits (18), Expect = 0.008
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                    
Query: 54   tttnaaaaattaaaaaanttaaaa 77
            ||| ||||||||||||| ||||||
Sbjct: 1224 tttaaaaaattaaaaaaattaaaa 1247


 Score = 34.2 bits (17), Expect = 0.031
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                
Query: 58   aaaaattaaaaaanttaaaa 77
            ||||||||||||| ||||||
Sbjct: 1237 aaaaattaaaaaaattaaaa 1256


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1887
Number of Sequences: 6905
Number of extensions: 1887
Number of successful extensions: 973
Number of sequences better than 10.0: 430
length of query: 122
length of database: 5,674,871
effective HSP length: 14
effective length of query: 108
effective length of database: 5,578,201
effective search space: 602445708
effective search space used: 602445708
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)

Query= Contig-U07117-1 (Contig-U07117-1Q) /CSM_Contig/Contig-U07117-1Q.Seq.d
         (122 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq;
ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq;
ddbjhum9.seq; /db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq;
ddbjrod11.seq; ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq;
ddbjrod6.seq; ddbjrod7.seq; ddbjrod8.seq; ddbjrod9.seq;
/db/DDBJNEW.DATA/a/new_ddbjrod.seq; ddbjmam.seq;
/db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq;
ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq;
ddbjbct8.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq; ddbjvrl1.seq;
ddbjvrl2.seq; ddbjvrl3.seq; /db/DDBJNEW.DATA/a/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq;
ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq;
ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq;
ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq;
ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq;
ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq;
ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq;
ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss40.seq;
ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq;
ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq;
ddbjgss49.seq; ddbjgss50.seq; ddbjgss51.seq; ddbjgss52.seq;
ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq; ddbjgss56.seq;
ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq; ddbjgss60.seq;
ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq;
ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq;
ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq;
ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq;
ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq; ddbjgss79.seq;
ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq; ddbjgss82.seq;
ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq; ddbjgss86.seq;
ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq; ddbjgss9.seq;
ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq; ddbjgss93.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss3.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss4.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss5.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss6.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg6.seq; ddbjhtg7.seq;
ddbjhtg8.seq; ddbjhtg9.seq; /db/DDBJNEW.DATA/a/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg2.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq;
ddbjpat7.seq; ddbjpat8.seq; ddbjpat9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts2.seq;
ddbjsts3.seq; ddbjsts4.seq; /db/DDBJNEW.DATA/a/new_ddbjsts.seq;
ddbjsyn.seq; /db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/a/new_est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_lesc1.seq; /db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq;
est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq;
est_osat1.seq; /db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq;
/db/DDBJNEW.DATA/a/new_est_rest1.seq
           37,416,323 sequences; Z,708,242,551 total letters

Searching....................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CE806401|CE806401.1 tigr-gss-dog-17000331484110 Dog Library ...    40   0.072  2
CN164666|CN164666.1 995027 MARC 4PIG Sus scrofa cDNA 5', mRN...    44   0.45   1
CE120978|CE120978.1 tigr-gss-dog-17000325908034 Dog Library ...    34   1.0    2
AC021456|AC021456.3 Homo sapiens clone RP11-158D20, WORKING ...    36   1.3    2
AC091899|AC091899.2 Homo sapiens chromosome 5 clone RP11-158...    36   1.3    2
CE143785|CE143785.1 tigr-gss-dog-17000371267049 Dog Library ...    32   1.6    2
Z83223|Z83223.1 Caenorhabditis elegans cosmid E01G4.               34   1.7    2
AY171066|AY171066.1 Dictyostelium discoideum extrachromosoma...    34   2.9    2
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 ma...    34   3.1    2
CG745316|CG745316.1 P038-1-G09.ya Ppa EcoRI BAC Library Pris...    36   3.3    2
BX470113|BX470113.8 Zebrafish DNA sequence from clone DKEY-2...    34   4.1    2
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 ma...    34   4.5    2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 ma...    34   5.1    2
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 ma...    34   6.0    2
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 ma...    34   6.2    2
AC126019|AC126019.15 Medicago truncatula clone mth2-22p22, c...    40   7.0    1
CE139232|CE139232.1 tigr-gss-dog-17000371224033 Dog Library ...    40   7.0    1
AC120167|AC120167.4 Mus musculus chromosome 12 clone RP24-47...    40   7.0    1
AL132948|AL132948.2 Caenorhabditis elegans YAC Y39B6A.             40   7.0    1
CE710588|CE710588.1 tigr-gss-dog-17000369461933 Dog Library ...    40   7.0    1
AC139962|AC139962.4 Rattus norvegicus clone CH230-152N10, WO...    40   7.0    1
AC105695|AC105695.4 Rattus norvegicus clone CH230-12A15, ***...    40   7.0    1
CE357598|CE357598.1 tigr-gss-dog-17000361419348 Dog Library ...    40   7.0    1
AC140668|AC140668.3 Canis familiaris clone RP81-329I8, WORKI...    40   7.0    1
CE541821|CE541821.1 tigr-gss-dog-17000366037417 Dog Library ...    40   7.0    1
BM092453|BM092453.1 sah13f11.y3 Gm-c1086 Glycine max cDNA cl...    40   7.0    1
AC119418|AC119418.5 Medicago truncatula clone mth1-23l16, co...    40   7.0    1
AC122242|AC122242.2 Mus musculus BAC clone RP23-147P2 from c...    40   7.0    1
AL392103|AL392103.6 Human DNA sequence from clone RP11-477L1...    40   7.0    1
BE992745|BE992745.1 UI-M-BZ1-bel-b-04-0-UI.s1 NIH_BMAP_MHI2_...    40   7.0    1
BH961760|BH961760.1 odj13c08.b1 B.oleracea002 Brassica olera...    34   7.7    2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 ma...    34   7.9    2
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 ma...    34   8.0    2
BH992113|BH992113.1 oei11f02.b1 B.oleracea002 Brassica olera...    34   8.0    2
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 ma...    34   8.2    2
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   9.1    2
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clon...    34   9.4    2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 ma...    36   9.9    2

>CE806401|CE806401.1 tigr-gss-dog-17000331484110 Dog Library Canis
           familiaris genomic, genomic survey sequence.
          Length = 339

 Score = 40.1 bits (20), Expect(2) = 0.072
 Identities = 24/26 (92%)
 Strand = Plus / Minus


Query: 53  ttttnaaaaattaaaaaanttaaaac 78
           |||| ||||||||||||| |||||||
Sbjct: 301 ttttaaaaaattaaaaaatttaaaac 276

 Score = 26.3 bits (13), Expect(2) = 0.072
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 58  aaaaattaaaaaa 70
           |||||||||||||
Sbjct: 248 aaaaattaaaaaa 260

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 1,652,427
Number of Sequences: 37416323
Number of extensions: 1652427
Number of successful extensions: 692759
Number of sequences better than 10.0: 77
length of query: 122
length of database: Z,708,242,551
effective HSP length: 21
effective length of query: 101
effective length of database: Y,922,499,768
effective search space: 4234172476568
effective search space used: 4234172476568
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING:  [000.000]  Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

Query= Contig-U07117-1 (Contig-U07117-1Q) /CSM_Contig/Contig-U07117-1Q.Seq.d
         (122 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 23,415,766
Number of extensions: 46193
Number of successful extensions: 35
Number of sequences better than 10.0: 0
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 0
Length of query: 40
Length of database: 1,040,966,779
Length adjustment: 14
Effective length of query: 26
Effective length of database: 996,106,789
Effective search space: 25898776514
Effective search space used: 25898776514
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 24 (13.9 bits)

 psg: 0.80  gvh: 0.37  alm: 0.65  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.24  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U07117-1 is nuc