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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U07116-1
Contig ID Contig-U07116-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U07116-1 (Contig-U07116-1Q) /CSM_Contig/Contig-U07116-1Q.Seq.d
AAAAGATTTGAAAAAGCAGAATCATTATTATTGGAATCAATTGAAAAGAA
TCCAAAGAATTCTGATACTCTTGCAAATCTTATCAATTGTTATATTAATA
TGAAAAAACCAAATGAAATCATTCAAAGATTTATAAATCAACTTAAAACT
TTATCACCAAAACATGATTGGACATCAGCAGTTAATGAAGCTGAAGCTTT
ATTTGAAGTTTCTAAATCAAGATTTAATTAATGTTTTATATATATATATT
TAAATAAAAAAAAA
Gap no gap
Contig length 264
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1167130
End point 1167394
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U07116
List of clone(s) 

est1=VSK481Z,1,241
est2=VSK481F,2,265
Translated Amino Acid sequence 
KRFEKAESLLLESIEKNPKNSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSA
VNEAEALFEVSKSRFN*cfiyiylnkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
KRFEKAESLLLESIEKNPKNSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSA
VNEAEALFEVSKSRFN*cfiyiylnkkk


Frame B:
kdlkkqnhyywnqlkriqrilillqilsivili*knqmksfkdl*inlklyhqnmighqq
lmklklylkflnqdlinvlyiyi*ikk


Frame C:
ki*ksriiiigin*keskef*yscksyqlly*yektk*nhskiykst*nfitkt*ldiss
**s*sfi*sf*iki*lmfyiyifk*kk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U07116-1 (Contig-U07116-1Q)
/CSM_Contig/Contig-U07116-1Q.Seq.d
         (264 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U07116-1 (Contig-U07116-1Q) /CSM_Contig/Conti...   468  e-132
Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Conti...    36  0.018
Contig-U06555-1 (Contig-U06555-1Q) /CSM_Contig/Conti...    36  0.018
Contig-U14443-1 (Contig-U14443-1Q) /CSM_Contig/Conti...    34  0.071
Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Conti...    34  0.071
Contig-U10831-1 (Contig-U10831-1Q) /CSM_Contig/Conti...    34  0.071
Contig-U10461-1 (Contig-U10461-1Q) /CSM_Contig/Conti...    34  0.071
Contig-U09260-1 (Contig-U09260-1Q) /CSM_Contig/Conti...    34  0.071
Contig-U08747-1 (Contig-U08747-1Q) /CSM_Contig/Conti...    34  0.071
Contig-U07877-1 (Contig-U07877-1Q) /CSM_Contig/Conti...    34  0.071

>Contig-U07116-1 (Contig-U07116-1Q) /CSM_Contig/Contig-U07116-1Q.Seq.d
          Length = 264

 Score =  468 bits (236), Expect = e-132
 Identities = 236/236 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagatttgaaaaagcagaatcattattattggaatcaattgaaaagaatccaaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaagatttgaaaaagcagaatcattattattggaatcaattgaaaagaatccaaagaat 60

                                                                       
Query: 61  tctgatactcttgcaaatcttatcaattgttatattaatatgaaaaaaccaaatgaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tctgatactcttgcaaatcttatcaattgttatattaatatgaaaaaaccaaatgaaatc 120

                                                                       
Query: 121 attcaaagatttataaatcaacttaaaactttatcaccaaaacatgattggacatcagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attcaaagatttataaatcaacttaaaactttatcaccaaaacatgattggacatcagca 180

                                                                   
Query: 181 gttaatgaagctgaagctttatttgaagtttctaaatcaagatttaattaatgttt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttaatgaagctgaagctttatttgaagtttctaaatcaagatttaattaatgttt 236


>Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Contig-U12073-1Q.Seq.d
          Length = 922

 Score = 36.2 bits (18), Expect = 0.018
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 143 ttaaaactttatcaccaa 160
           ||||||||||||||||||
Sbjct: 774 ttaaaactttatcaccaa 791


>Contig-U06555-1 (Contig-U06555-1Q) /CSM_Contig/Contig-U06555-1Q.Seq.d
          Length = 440

 Score = 36.2 bits (18), Expect = 0.018
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 190 gctgaagctttatttgaa 207
           ||||||||||||||||||
Sbjct: 220 gctgaagctttatttgaa 203


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5840
Number of Sequences: 6905
Number of extensions: 5840
Number of successful extensions: 2050
Number of sequences better than 10.0: 213
length of query: 264
length of database: 5,674,871
effective HSP length: 15
effective length of query: 249
effective length of database: 5,571,296
effective search space: 1387252704
effective search space used: 1387252704
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U07116-1 (Contig-U07116-1Q) /CSM_Contig/Contig-U07116-1Q.Seq.d
         (264 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU271271) Dictyostelium discoideum vegetative cDNA clone:VS...   466   e-127  1
(AU271272) Dictyostelium discoideum vegetative cDNA clone:VS...   462   e-126  1
(AC158110) Bos taurus clone CH240-50D8, WORKING DRAFT SEQUEN...    36   0.014  5
(EU024653) Polistes sp. MD1 mitochondrion, partial genome.         44   0.080  3
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   0.098  6
(AC183430) Medicago truncatula chromosome 8 clone mth2-176i2...    38   0.11   4
(AC198483) Zea mays chromosome 1 clone CH201-267E3; ZMMBBc02...    38   0.17   4
(AL359761) Human DNA sequence from clone RP11-202O6 on chrom...    44   0.20   2
(CP000728) Clostridium botulinum F str. Langeland, complete ...    40   0.33   11
(AC183897) Zea mays chromosome 3 clone CH201-260J13; ZMMBBc0...    38   0.40   5
(AC167201) Mus musculus 10 BAC RP23-402J11 (Roswell Park Can...    46   0.60   1
(AC160029) Mus musculus 10 BAC RP24-105I7 (Roswell Park Canc...    46   0.60   1
(CT737298) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.60   1
(CC961136) BOIBP93TR BO_1.4_1.6_KB_nuc Brassica oleracea gen...    46   0.60   1
(BH723576) BOMCX07TF BO_2_3_KB Brassica oleracea genomic clo...    46   0.60   1
(BH591208) BOGUP58TR BOGU Brassica oleracea genomic clone BO...    46   0.60   1
(FD952862) RS3GS48JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    46   0.60   1
(AE015928) Bacteroides thetaiotaomicron VPI-5482, complete g...    46   0.60   1
(CT827850) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.95   4
(AC160516) Medicago truncatula chromosome 7 clone mth2-66d22...    36   1.1    4
(AC124479) Mus musculus BAC clone RP24-113I12 from chromosom...    32   1.2    2
(AC192204) Zea mays chromosome 1 clone CH201-338P5; ZMMBBc03...    38   1.3    2
(AC214229) Zea mays chromosome 8 clone CH201-496N21; ZMMBBc0...    38   1.4    2
(CP000395) Borrelia afzelii PKo, complete genome.                  42   1.6    8
(EF759531) Mus musculus C57BL/6N IST10672H4BBF1 gene trap em...    32   1.6    2
(EF872974) Mus musculus C57BL/6N IST12105C10BBF1 gene trap e...    32   1.6    2
(EF910006) Mus musculus C57BL/6N IST12314F7BBF1 gene trap em...    32   1.6    2
(EF731133) Mus musculus C57BL/6N IST10261C12BBF1 gene trap e...    32   1.7    2
(EF825598) Mus musculus C57BL/6N IST11327B1BBF1 gene trap em...    32   1.7    2
(EF760795) Mus musculus C57BL/6N IST10604C5BBF1 gene trap em...    32   1.7    2
(EF728990) Mus musculus C57BL/6N IST10104B1HMF1 gene trap em...    32   1.7    2
(EF785683) Mus musculus C57BL/6N IST11040A8BBF1 gene trap em...    32   1.7    2
(EF767998) Mus musculus C57BL/6N IST10604C5HMF1 gene trap em...    32   1.7    2
(EF909181) Mus musculus C57BL/6N IST12314F7HMF1 gene trap em...    32   1.7    2
(EF754930) Mus musculus C57BL/6N IST10672H4HMF1 gene trap em...    32   1.7    2
(EF931977) Mus musculus C57BL/6N IST12560H2HMF1 gene trap em...    32   1.7    2
(EY630550) CAWW21744.fwd CAWW Capitella sp. I ECS-2004 Subtr...    38   1.7    2
(DB723387) Solanum lycopersicum cDNA, clone: LEFL2043I11, 5'...    36   1.8    2
(EK481983) 1095469522938 Global-Ocean-Sampling_GS-32-01-01-1...    38   2.3    2
(AL837510) Mouse DNA sequence from clone RP23-200B23 on chro...    44   2.4    1
(AM474585) Vitis vinifera contig VV78X272109.31, whole genom...    44   2.4    1
(EA754557) Sequence 173 from patent US 7371811.                    44   2.4    1
(CS560531) Sequence 2 from Patent WO2007020617.                    44   2.4    1
(BD265942) Schizophrenia associated genes, proteins and bial...    44   2.4    1
(AR894616) Sequence 173 from patent US 7067627.                    44   2.4    1
(AR244472) Sequence 173 from patent US 6476208.                    44   2.4    1
(AL078590) Human DNA sequence from clone RP11-557H15 on chro...    44   2.4    1
(AE014306) Homo sapiens chromosome 13q34 schizophrenia regio...    44   2.4    1
(AC007052) Homo sapiens chromosome 18, clone hRPK.411_H_24, ...    44   2.4    1
(AC093482) Mus musculus clone RP23-79J2, WORKING DRAFT SEQUE...    44   2.4    1
(AC090408) Homo sapiens chromosome 18 clone RP11-859C21 map ...    44   2.4    1
(AC090230) Homo sapiens chromosome 18 clone RP11-734A7 map 1...    44   2.4    1
(AC087678) Homo sapiens chromosome 18 clone RP11-873L22 map ...    44   2.4    1
(AC087535) Homo sapiens chromosome 18 clone RP11-869L2 map 1...    44   2.4    1
(AP002424) Homo sapiens genomic DNA, chromosome 18q21 clone:...    44   2.4    1
(AP001592) Homo sapiens genomic DNA, chromosome 18q21 clone:...    44   2.4    1
(AP001569) Homo sapiens genomic DNA, chromosome 18q21 clone:...    44   2.4    1
(AZ670332) ENTLP75TF Entamoeba histolytica Sheared DNA Entam...    44   2.4    1
(EK120010) 1092963353318 Global-Ocean-Sampling_GS-31-01-01-1...    44   2.4    1
(CP000233) Lactobacillus salivarius UCC118, complete genome.       44   2.4    1
(AV352682) Mus musculus 11 days embryo gonad cDNA, RIKEN ful...    36   2.4    2
(AM711639) Cuscuta gronovii complete chloroplast genome.           42   2.7    2
(BX005295) Zebrafish DNA sequence from clone CH211-181P19 in...    38   3.5    3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   3.6    9
(ER379907) 1094338638342 Global-Ocean-Sampling_GS-34-01-01-1...    30   4.3    3
(CU467559) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   4.3    3
(CP000847) Rickettsia akari str. Hartford, complete genome.        36   4.8    10
(CT573052) Medicago truncatula chromosome 5 clone mth2-60f21...    38   4.8    4
(AC157818) Mus musculus chromosome 3, clone RP24-268H11, com...    40   4.9    2
(AC176841) Strongylocentrotus purpuratus clone R3-3120C6, WO...    36   4.9    2
(AC206877) Zea mays chromosome 4 clone CH201-121C18; ZMMBBc0...    38   4.9    2
(EY543829) CAWT14284.rev CAWT Capitella sp. I ECS-2004 Prima...    36   5.0    2
(EY543830) CAWT14284.fwd CAWT Capitella sp. I ECS-2004 Prima...    36   5.3    2
(AC198180) Zea mays chromosome unknown clone CH201-120D3; ZM...    42   5.3    2
(CE283239) tigr-gss-dog-17000333776430 Dog Library Canis lup...    38   6.0    2
(EF717091) Mus musculus C57BL/6N IST10085F11BBF1 gene trap e...    30   6.1    2
(EY555158) CAWT2957.rev CAWT Capitella sp. I ECS-2004 Primar...    36   6.6    2
(BX138880) Danio rerio genomic clone DKEY-91P11, genomic sur...    34   6.9    2
(EY530335) CAPF6167.rev CAPF Capitella sp. I ECS-2004 whole ...    36   7.1    2
(CW746776) MARC_926636 CHORI-240-277E3 Bos taurus genomic cl...    36   7.8    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   8.8    6
(AC133865) Homo sapiens chromosome 1 clone RP11-93N20, compl...    36   8.9    2
(CR382139) Debaryomyces hansenii chromosome G of strain CBS7...    34   8.9    9
(AC170476) Bos taurus clone CH240-240J22, WORKING DRAFT SEQU...    36   9.0    5
(AR535505) Sequence 67 from patent US 6737248.                     40   9.0    2
(AR353949) Sequence 67 from patent US 6593114.                     40   9.0    2
(BV364888) S231P6435FG10.T0 BedlingtonTerrier Canis familiar...    42   9.4    1
(BV043958) S210P6215RE8.T0 BALB/cByJ Mus musculus STS genomi...    42   9.4    1
(AL844204) Mouse DNA sequence from clone RP23-189N15 on chro...    42   9.4    1
(AC104296) Mus Musculus Strain 129S6/SvEvTac chromosome 2 BA...    42   9.4    1
(AC188683) Pan troglodytes BAC clone CH251-586G11 from chrom...    42   9.4    1
(AC187372) Pan troglodytes BAC clone CH251-571H4 from chromo...    42   9.4    1
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN...    42   9.4    1
(AM489321) Vitis vinifera contig VV78X131434.8, whole genome...    42   9.4    1
(AK120979) Oryza sativa Japonica Group cDNA clone:J023041P05...    42   9.4    1
(AJ010592) Guillardia theta DNA for complete sequence of nuc...    42   9.4    1
(AC077693) Oryza sativa chromosome 10 BAC OSJNBa0095C07 geno...    42   9.4    1
(EA689893) Sequence 68772 from patent US 7365185.                  42   9.4    1
(DJ349585) A method of detecting H. influenzae, a set of pri...    42   9.4    1
(CR956393) Pig DNA sequence from clone CH242-163M14 on chrom...    42   9.4    1

>(AU271271) Dictyostelium discoideum vegetative cDNA clone:VSK481,
           5' end single read.
          Length = 264

 Score =  466 bits (235), Expect = e-127
 Identities = 235/235 (100%)
 Strand = Plus / Plus


Query: 2   aaagatttgaaaaagcagaatcattattattggaatcaattgaaaagaatccaaagaatt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaagatttgaaaaagcagaatcattattattggaatcaattgaaaagaatccaaagaatt 60


Query: 62  ctgatactcttgcaaatcttatcaattgttatattaatatgaaaaaaccaaatgaaatca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgatactcttgcaaatcttatcaattgttatattaatatgaaaaaaccaaatgaaatca 120


Query: 122 ttcaaagatttataaatcaacttaaaactttatcaccaaaacatgattggacatcagcag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttcaaagatttataaatcaacttaaaactttatcaccaaaacatgattggacatcagcag 180


Query: 182 ttaatgaagctgaagctttatttgaagtttctaaatcaagatttaattaatgttt 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttaatgaagctgaagctttatttgaagtttctaaatcaagatttaattaatgttt 235

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 356,726,227
Number of extensions: 23103566
Number of successful extensions: 2025190
Number of sequences better than 10.0: 168
Length of query: 264
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 241
Effective length of database: 93,106,754,628
Effective search space: 22438727865348
Effective search space used: 22438727865348
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U07116-1 (Contig-U07116-1Q) /CSM_Contig/Contig-U07116-1Q.Seq.d
         (264 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FU2) RecName: Full=Coatomer subunit epsilon; AltName: Full=E...   154   1e-36
BT055080_1(BT055080|pid:none) Zea mays full-length cDNA clone ZM...    55   6e-07
BT036837_1(BT036837|pid:none) Zea mays full-length cDNA clone ZM...    55   6e-07
EU958174_1(EU958174|pid:none) Zea mays clone 1676743 coatomer su...    55   6e-07
EF082944_1(EF082944|pid:none) Picea sitchensis clone WS0293_M11 ...    55   1e-06
EU284905_1(EU284905|pid:none) TSA: Elaeis guineensis EgEfMPOB000...    54   2e-06
AY087474_1(AY087474|pid:none) Arabidopsis thaliana clone 35814 m...    54   2e-06
(Q9SA78) RecName: Full=Coatomer subunit epsilon-1; AltName: Full...    54   2e-06
BT080907_1(BT080907|pid:none) Caligus clemensi clone ccle-evs-51...    52   6e-06
(O62246) RecName: Full=Coatomer subunit epsilon; AltName: Full=E...    50   2e-05
AB042113_1(AB042113|pid:none) Glycine max cope1 mRNA for epsilon...    50   2e-05
AB042114_1(AB042114|pid:none) Glycine max cope2 mRNA for epsilon...    50   2e-05
BT076681_1(BT076681|pid:none) Caligus rogercresseyi clone crog-e...    49   5e-05
AJ866984_1(AJ866984|pid:none) Medicago truncatula mRNA for coato...    49   7e-05
FN357691_2(FN357691|pid:none) Schistosoma mansoni genome sequenc...    44   0.001
EF214996_1(EF214996|pid:none) Callithrix jacchus clone D10-41.4_...    43   0.004
AC005197_2(AC005197|pid:none) Homo sapiens chromosome 19, cosmid...    43   0.004
AK126476_1(AK126476|pid:none) Homo sapiens cDNA FLJ44512 fis, cl...    43   0.004
(Q5RFR8) RecName: Full=Coatomer subunit epsilon; AltName: Full=E...    43   0.004
DQ000510_1(DQ000510|pid:none) Synthetic construct clone PSF:1025...    43   0.004
AF092438_1(AF092438|pid:none) Homo sapiens epsilon-COP mRNA, com...    43   0.004
U89427_1(U89427|pid:none) Mus musculus strain BALB/c epsilon-COP...    42   0.007
(Q28104) RecName: Full=Coatomer subunit epsilon; AltName: Full=E...    42   0.007
FN318706_1(FN318706|pid:none) Schistosoma japonicum isolate Anhu...    42   0.009
AY813965_1(AY813965|pid:none) Schistosoma japonicum SJCHGC01641 ...    41   0.011
BT082153_1(BT082153|pid:none) Anoplopoma fimbria clone afim-evh-...    40   0.019
AK044857_1(AK044857|pid:none) Mus musculus 9.5 days embryo parth...    40   0.025
AF483537_1(AF483537|pid:none) Oncorhynchus mykiss clone B51 VHSV...    40   0.025
(Q6ZXV5) RecName: Full=Transmembrane and TPR repeat-containing p...    40   0.025
AK165838_1(AK165838|pid:none) Mus musculus lung RCB-0558 LLC cDN...    40   0.025
CR749309_1(CR749309|pid:none) Homo sapiens mRNA; cDNA DKFZp686O2...    40   0.025
BT073602_1(BT073602|pid:none) Oncorhynchus mykiss clone omyk-evn...    40   0.025
(Q8BRH0) RecName: Full=Transmembrane and TPR repeat-containing p...    40   0.025
AB293565_1(AB293565|pid:none) Mordacia mordax MmoCOP mRNA for co...    40   0.033
CR936640_1(CR936640|pid:none) Homo sapiens mRNA; cDNA DKFZp686O2...    38   0.095
AK290436_1(AK290436|pid:none) Homo sapiens cDNA FLJ78524 complet...    38   0.095
AK302755_1(AK302755|pid:none) Homo sapiens cDNA FLJ52097 complet...    38   0.095
CR933632_1(CR933632|pid:none) Homo sapiens mRNA; cDNA DKFZp686C0...    38   0.095
CR749244_1(CR749244|pid:none) Homo sapiens mRNA; cDNA DKFZp686M1...    38   0.095
BX548174_6(BX548174|pid:none) Prochlorococcus marinus MED4 compl...    36   0.47
CT573071_862(CT573071|pid:none) Kuenenia stuttgartiensis genome ...    35   1.1
BC161298_1(BC161298|pid:none) Xenopus tropicalis hypothetical pr...    35   1.1
DQ347597_1(DQ347597|pid:none) Bos taurus clone A18 COPE mRNA, pa...    34   1.4
AM920428_1209(AM920428|pid:none) Penicillium chrysogenum Wiscons...    34   1.8
AE014187_425(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   2.3
CP000510_1131(CP000510|pid:none) Psychromonas ingrahamii 37, com...    33   2.3
AM270168_187(AM270168|pid:none) Aspergillus niger contig An08c01...    33   2.3
FN315606_1(FN315606|pid:none) Schistosoma japonicum isolate Anhu...    33   3.1
AY811607_1(AY811607|pid:none) Schistosoma japonicum SJCHGC09192 ...    33   3.1
FN315601_1(FN315601|pid:none) Schistosoma japonicum isolate Anhu...    33   3.1
FN315602_1(FN315602|pid:none) Schistosoma japonicum isolate Anhu...    33   3.1
FN321303_1(FN321303|pid:none) Schistosoma japonicum isolate Anhu...    33   3.1
FN315600_1(FN315600|pid:none) Schistosoma japonicum isolate Anhu...    33   3.1
FN315603_1(FN315603|pid:none) Schistosoma japonicum isolate Anhu...    33   3.1
FN315604_1(FN315604|pid:none) Schistosoma japonicum isolate Anhu...    33   3.1
AE017226_2057(AE017226|pid:none) Treponema denticola ATCC 35405,...    33   4.0
CP001130_1028(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c...    33   4.0
AP008934_1141(AP008934|pid:none) Staphylococcus saprophyticus su...    33   4.0
CP000139_3189(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    33   4.0
AJ938182_1491(AJ938182|pid:none) Staphylococcus aureus RF122 com...    32   5.2
FM992690_258(FM992690|pid:none) Candida dubliniensis CD36 chromo...    32   5.2
BA000033_1570(BA000033|pid:none) Staphylococcus aureus subsp. au...    32   5.2
BX649606_73(BX649606|pid:none) Aspergillus fumigatus BAC pilot p...    32   5.2
CP000581_485(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...    32   5.2
(Q61LA1) RecName: Full=Tetratricopeptide repeat protein 21 homol...    32   5.2
CP000478_73(CP000478|pid:none) Syntrophobacter fumaroxidans MPOB...    32   6.8
BX571856_1663(BX571856|pid:none) Staphylococcus aureus subsp. au...    32   6.8
CP000465_25(CP000465|pid:none) Roseobacter denitrificans OCh 114...    32   6.8
CP000393_1297(CP000393|pid:none) Trichodesmium erythraeum IMS101...    32   8.9
AB170269_1(AB170269|pid:none) Macaca fascicularis brain cDNA clo...    32   8.9
CT573071_863(CT573071|pid:none) Kuenenia stuttgartiensis genome ...    32   8.9
AM398681_980(AM398681|pid:none) Flavobacterium psychrophilum JIP...    32   8.9

>(Q55FU2) RecName: Full=Coatomer subunit epsilon; AltName:
           Full=Epsilon-coat protein;          Short=Epsilon-COP;
          Length = 300

 Score =  154 bits (388), Expect = 1e-36
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +1

Query: 1   KRFEKAESLLLESIEKNPKNSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSA 180
           KRFEKAESLLLESIEKNPKNSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSA
Sbjct: 225 KRFEKAESLLLESIEKNPKNSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSA 284

Query: 181 VNEAEALFEVSKSRFN 228
           VNEAEALFEVSKSRFN
Sbjct: 285 VNEAEALFEVSKSRFN 300

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 346,349,715
Number of extensions: 5798806
Number of successful extensions: 17073
Number of sequences better than 10.0: 72
Number of HSP's gapped: 17063
Number of HSP's successfully gapped: 72
Length of query: 88
Length of database: 1,040,966,779
Length adjustment: 58
Effective length of query: 30
Effective length of database: 855,118,249
Effective search space: 25653547470
Effective search space used: 25653547470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.72  gvh: 0.40  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for Contig-U07116-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0