Contig-U01474-1
Contig ID Contig-U01474-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01474-1 (Contig-U01474-1Q) /CSM_Contig/Contig-U01474-1Q.Seq.d
TAATTAAAAAAAATTAAATTAAATTAAATTAAAAAAATTAAATTAAAAAA
AATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

Gap no gap
Contig length 108
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U01474
List of clone(s)

est1=SLK510Z,1,109
Translated Amino Acid sequence
*lkkikln*IKKIKLKKIKKKKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
*lkkikln*IKKIKLKKIKKKKKKKKKKKKKKKKKK


Frame B:
n*kkln*iklkkln*kklkkkkkkkkkkkkkkkkk


Frame C:
ikkn*ikln*kn*ikkn*kkkkkkkkkkkkkkkkk


own update ----------
Homology vs CSM-cDNA -
dna update 2005. 5.15
Homology vs DNA
Query= Contig-U01474-1 (Contig-U01474-1Q) /CSM_Contig/Contig-U01474-1Q.Seq.d
(108 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq;
ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq;
ddbjhum9.seq; /db/DDBJNEW.DATA/b/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/b/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq;
ddbjrod11.seq; ddbjrod12.seq; ddbjrod13.seq; ddbjrod14.seq;
ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq;
ddbjrod7.seq; ddbjrod8.seq; ddbjrod9.seq;
/db/DDBJNEW.DATA/b/new_ddbjrod.seq; ddbjmam.seq;
/db/DDBJNEW.DATA/b/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq;
ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq; ddbjvrt7.seq;
/db/DDBJNEW.DATA/b/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq;
/db/DDBJNEW.DATA/b/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln12.seq; ddbjpln13.seq; ddbjpln2.seq;
ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq;
ddbjpln8.seq; ddbjpln9.seq; /db/DDBJNEW.DATA/b/new_ddbjpln.seq;
ddbjbct1.seq; ddbjbct10.seq; ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq;
ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq; ddbjbct8.seq; ddbjbct9.seq;
/db/DDBJNEW.DATA/b/new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq;
ddbjvrl3.seq; ddbjvrl4.seq; /db/DDBJNEW.DATA/b/new_ddbjvrl.seq;
ddbjphg.seq; /db/DDBJNEW.DATA/b/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/b/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss100.seq; ddbjgss101.seq; ddbjgss102.seq; ddbjgss103.seq;
ddbjgss104.seq; ddbjgss105.seq; ddbjgss106.seq; ddbjgss107.seq;
ddbjgss108.seq; ddbjgss109.seq; ddbjgss11.seq; ddbjgss110.seq;
ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq; ddbjgss15.seq;
ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq; ddbjgss19.seq;
ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq; ddbjgss22.seq;
ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq; ddbjgss26.seq;
ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq; ddbjgss3.seq;
ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq; ddbjgss33.seq;
ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq; ddbjgss37.seq;
ddbjgss38.seq; ddbjgss39.seq; ddbjgss4.seq; ddbjgss40.seq;
ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq;
ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq;
ddbjgss49.seq; ddbjgss5.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq;
ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq;
ddbjgss6.seq; ddbjgss60.seq; ddbjgss61.seq; ddbjgss62.seq;
ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq; ddbjgss66.seq;
ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq; ddbjgss7.seq;
ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq; ddbjgss73.seq;
ddbjgss74.seq; ddbjgss75.seq; ddbjgss76.seq; ddbjgss77.seq;
ddbjgss78.seq; ddbjgss79.seq; ddbjgss8.seq; ddbjgss80.seq;
ddbjgss81.seq; ddbjgss82.seq; ddbjgss83.seq; ddbjgss84.seq;
ddbjgss85.seq; ddbjgss86.seq; ddbjgss87.seq; ddbjgss88.seq;
ddbjgss89.seq; ddbjgss9.seq; ddbjgss90.seq; ddbjgss91.seq;
ddbjgss92.seq; ddbjgss93.seq; ddbjgss94.seq; ddbjgss95.seq;
ddbjgss96.seq; ddbjgss97.seq; ddbjgss98.seq; ddbjgss99.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss1.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg52.seq; ddbjhtg53.seq; ddbjhtg6.seq;
ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg2.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat15.seq; ddbjpat16.seq; ddbjpat17.seq; ddbjpat2.seq;
ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq;
ddbjpat8.seq; ddbjpat9.seq; /db/DDBJNEW.DATA/b/new_ddbjpat.seq;
ddbjsts1.seq; ddbjsts2.seq; ddbjsts3.seq; ddbjsts4.seq; ddbjsts5.seq;
ddbjsts6.seq; ddbjsts7.seq; ddbjsts8.seq;
/db/DDBJNEW.DATA/b/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/b/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/b/new_est_atha1.seq; est_cele1.seq;
/db/DDBJNEW.DATA/b/new_est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/b/new_est_hum1.seq;
est_lesc1.seq; /db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq;
est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq;
est_osat1.seq; /db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq; est_rest6.seq;
/db/DDBJNEW.DATA/b/new_est_rest1.seq
41,030,347 sequences; _,117,720,494 total letters

Searching.....................................................done

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 41030347
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 108
length of database: _,117,720,494
effective HSP length: 21
effective length of query: 87
effective length of database: ^,256,083,207
effective search space: 4024279239009
effective search space used: 4024279239009
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING: [000.000] 1115802004.asblm.dna: Blast: No valid letters to be indexed on context 0

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U01474-1 (Contig-U01474-1Q) /CSM_Contig/Contig-U01474-1Q.Seq.d
(108 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 36
Length of database: 1,051,180,864
Length adjustment: 0
Effective length of query: 36
Effective length of database: 1,051,180,864
Effective search space: 0
Effective search space used: 0
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 24 (13.9 bits)

PSORT

psg: 0.03 gvh: -0.41 alm: 0.91 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.00
nuc: 1.88 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
16.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for Contig-U01474-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0