Contig-U07096-1 |
Contig ID |
Contig-U07096-1 |
Contig update |
2001. 8.30 |
Contig sequence |
|
Gap |
no gap |
Contig length |
635 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
1008749 |
End point |
1008126 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U07096 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.11 |
Homology vs DNA |
Query= Contig-U07096-1 (Contig-U07096-1Q) /CSM_Contig/Contig-U07096-1Q.Seq.d (635 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU271010) Dictyostelium discoideum vegetative cDNA clone:VS... 662 0.0 2 (AU271009) Dictyostelium discoideum vegetative cDNA clone:VS... 644 0.0 2 (BX950856) Zebrafish DNA sequence from clone DKEY-205L20 in ... 50 0.098 1 (CU207303) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.22 2 (AC230427) Bos taurus clone CH240-509A3, WORKING DRAFT SEQUE... 48 0.39 1 (AC169259) Bos taurus clone CH240-248K24, WORKING DRAFT SEQU... 48 0.39 1 (EK279186) 1095462288961 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.39 1 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 38 0.46 19 (EX947016) lj67d05.g7 Gnetum gnemon leaf (NYBG) Gnetum gnemo... 36 1.1 2 (AC159978) Mus musculus chromosome 15, clone RP24-173F4, com... 46 1.5 1 (AC115878) Mus musculus chromosome 15, clone RP24-358G9, com... 46 1.5 1 (AM453081) Vitis vinifera, whole genome shotgun sequence, co... 46 1.5 1 (AL137118) Human DNA sequence from clone RP11-108P5 on chrom... 46 1.5 1 (ES864652) WS02790.CR.1_G18 SS-IL-A-FL-14 Picea sitchensis c... 46 1.5 1 (DR472948) WS00957.B21_K04 IS-B-N-A-10 Picea engelmannii x P... 46 1.5 1 (EX343038) GQ03013.SP6_P08 GQ030 - Xylem planings - daytime ... 46 1.5 1 (EX342679) GQ03013.B7_P08 GQ030 - Xylem planings - daytime a... 46 1.5 1 (AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 40 1.7 11 (AQ866277) nbeb0027J21r CUGI Rice BAC Library (EcoRI) Oryza ... 34 3.0 2 (CU467037) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 5.6 4 (CU571324) Zebrafish DNA sequence from clone CH73-223D24 in ... 44 6.0 1 (BX842692) Zebrafish DNA sequence from clone DKEY-71H2 in li... 44 6.0 1 (AC162379) Mus musculus BAC clone RP23-132A15 from chromosom... 44 6.0 1 (AC102105) Mus musculus chromosome 12, clone RP23-89G24, com... 44 6.0 1 (AC208953) MACACA MULATTA BAC clone CH250-133J8 from chromos... 44 6.0 1 (AM453813) Vitis vinifera, whole genome shotgun sequence, co... 44 6.0 1 (AF499727) Cucumis melo BAC clone PIT92-60K17, complete sequ... 44 6.0 1 (AC214628) Populus trichocarpa clone POP040-F15, complete se... 44 6.0 1 (AC152653) Bos taurus clone CH240-15I13, WORKING DRAFT SEQUE... 44 6.0 1 (BX032531) Single read from an extremity of a full-length cD... 44 6.0 1 (BH046248) RPCI-24-274I7.TV RPCI-24 Mus musculus genomic clo... 44 6.0 1 (FH243495) CHO_OF3119xh04r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.0 1 (CW844227) GT10776.Ds5.05.21.2002.jw37.735 Arabidopsis thali... 44 6.0 1 (CE756999) tigr-gss-dog-17000369677403 Dog Library Canis lup... 44 6.0 1 (CE752947) tigr-gss-dog-17000369630699 Dog Library Canis lup... 44 6.0 1 (CC555427) CH240_462G6.TARBAC13P2 CHORI-240 Bos taurus genom... 44 6.0 1 (EE097360) S9B00362 Ripening Berries (VvS9) Vitis vinifera c... 44 6.0 1 (AM865105) Crassostrea gigas EST, 5' end sequence, clone cdn... 44 6.0 1 (AM862487) Crassostrea gigas EST, 5' end sequence, clone cdn... 44 6.0 1 (CV095760) FAMU_USDA_FP_3783 Vitis shuttleworthii L., grape ... 44 6.0 1 (CF203083) RR890915N0007_IIa_Fa_C12 Vitis sp. RR890915N Viti... 44 6.0 1 (CB006875) VVC039A05_140808 An expressed sequence tag databa... 44 6.0 1 (CB006664) VVC036D09_139498 An expressed sequence tag databa... 44 6.0 1 (CB005122) VVC008D08_126274 An expressed sequence tag databa... 44 6.0 1 (CA814905) CA12EI201IbF_C01 Cabernet Sauvignon Leaf - CA12EI... 44 6.0 1 (CA808059) CA12LIO1IIIFb_G08 Cabernet Sauvignon Leaf - CA12L... 44 6.0 1 (EV234009) VV_PEb11e09.b1 Vitis vinifera cv. perlette LibB V... 44 6.0 1 (CP000961) Shewanella woodyi ATCC 51908, complete genome. 44 6.0 1 (CP000768) Campylobacter jejuni subsp. doylei 269.97, comple... 44 6.0 1 (CP001056) Clostridium botulinum B str. Eklund 17B, complete... 34 6.0 15 (AC155110) Bos taurus clone CH240-37D12, WORKING DRAFT SEQUE... 36 6.8 4 (DQ463413) Pierphulia rosea voucher M.L. Forister W22 cytoch... 40 7.4 2 (DQ463412) Pierphulia rosea voucher M.L. Forister W21 cytoch... 40 7.4 2 (DQ463409) Infraphulia ilyodes voucher M.L. Forister W15 cyt... 40 7.4 2 (AF159241) Dictyostelium discoideum ras interacting protein ... 32 8.2 3 (EF625819) Carica papaya clone MSY BAC PH54H01 complete sequ... 34 8.3 4 (EJ125837) 1092343393760 Global-Ocean-Sampling_GS-27-01-01-1... 38 8.3 2 (AC095264) Rattus norvegicus clone CH230-9O3, *** SEQUENCING... 34 8.8 6 (CZ730709) OC__Ba0059I04.r OC__Ba Oryza coarctata genomic cl... 36 9.2 2 (AL589883) Arabidopsis thaliana DNA chromosome 5, BAC clone ... 34 9.4 5
>(AU271010) Dictyostelium discoideum vegetative cDNA clone:VSK328, 3' end single read. Length = 636
Score = 662 bits (334), Expect(2) = 0.0 Identities = 337/337 (100%) Strand = Plus / Plus
Query: 1 ccacgcgtnccgatatacagaatgttatcaattaaaacttgtagatcaattgtaaattta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ccacgcgtnccgatatacagaatgttatcaattaaaacttgtagatcaattgtaaattta 60
Query: 61 tcaagtaaacaagcaaatcaacaacaatttatttgtggatatgcagcaaaagttgttaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tcaagtaaacaagcaaatcaacaacaatttatttgtggatatgcagcaaaagttgttaaa 120
Query: 121 aggggcggtaaaaaagtagtagaagaagaggatacaggtgttgatcttagtgaaaaatat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aggggcggtaaaaaagtagtagaagaagaggatacaggtgttgatcttagtgaaaaatat 180
Query: 181 gatgtaaaagtgtcaaaagcatcttaccaaaagattatacaacgtttccaagttttattt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gatgtaaaagtgtcaaaagcatcttaccaaaagattatacaacgtttccaagttttattt 240
Query: 241 aaacgtccagaatttgcagacaaaaatgaaagtgatgaagagaaacgattaagattaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaacgtccagaatttgcagacaaaaatgaaagtgatgaagagaaacgattaagattaatt 300
Query: 301 aactacaattataccgcatacagtaacgaactcaaac 337 ||||||||||||||||||||||||||||||||||||| Sbjct: 301 aactacaattataccgcatacagtaacgaactcaaac 337
Score = 406 bits (205), Expect(2) = 0.0 Identities = 205/205 (100%) Strand = Plus / Plus
Query: 367 ttagattatcaatgggatgcagttatggaattaccagaagatctcagaaaaatcgcatta 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 ttagattatcaatgggatgcagttatggaattaccagaagatctcagaaaaatcgcatta 426
Query: 427 ttaattgaaacagataaagaaatgccattaattccatttttatatgatacaccaccaact 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 ttaattgaaacagataaagaaatgccattaattccatttttatatgatacaccaccaact 486
Query: 487 aaaggtgatccaaagaaaacaattcaattaaagaaaaaagatagaaatcttaaaccatct 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 aaaggtgatccaaagaaaacaattcaattaaagaaaaaagatagaaatcttaaaccatct 546
Query: 547 gaaagaactttcttatcaaattcac 571 ||||||||||||||||||||||||| Sbjct: 547 gaaagaactttcttatcaaattcac 571
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 729,540,569 Number of extensions: 44957185 Number of successful extensions: 3838877 Number of sequences better than 10.0: 62 Length of query: 635 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 612 Effective length of database: 93,106,754,628 Effective search space: 56981333832336 Effective search space used: 56981333832336 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.23 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |