Contig-U07084-1
Contig ID Contig-U07084-1
Contig update 2001. 8.30
Contig sequence
>Contig-U07084-1 (Contig-U07084-1Q) /CSM_Contig/Contig-U07084-1Q.Seq.d
CTTCAATCACATCTACAACTACATCTTCAACTTCAAATAAATCTATTGTA
GAATATTCATTAAATAATATATTAAATAATGCAACACTTTTATGTAAAAC
ACATTTATATTTTGGTAGATTAACAAGATTATTTAATCAAAGACTATCAG
AATATCATTTTTTACAATGTTTTAATTATCTTGCTTTAATAAATAATGAT
CAATTATTAAAGTATGAATCTTCTTTAGTATCATCTTCACCTTTAAATTT
ATATAAAATATTTATCATTCAATTAGATAAATTTGGCAAATCTAAAAATA
AAGATACAAATACAAATACAGATACAGATACAAATACAAATACAGATACA
AATAAAGAAATTGAATCAATAATTCAAATTAACCAAATATATAAATGAAA
TTGCAGGTGCATTATGTTATTGTGAAGTTAATTTTAAATCAATAATATTA
TATATATTAGCAAGTTGTATTACATTTAAATTTAAATTATATAAAGAATC
ATTAGAATCAAATACTCGAGCTTTTAAATTATTATCATCATTAAAACAAT
ATCATTGGTCAATTGATTTATTATTAAATAATTTATTAATTAAATTAAAA
TTAAATGAAACTATTGATATTGTTGACGGTGACGGTGATACTGAAATTCA
ATATCAAAAATTATTATTAAAAGAAAAAGAAGAGAAAGAAGAAAAAGAAT
ATCAAAATATTATTATAATATTAATTAAATATTGTATATTAATAGATGAT
AAAATTAGATTATCAGCTATTTTAGGTGATTATAATTTCCAGAAAATTAT
TTCAATTTATTTTAAAAATAATGACTATGTCGATTGTTTAATTAAATCAA
GTAATCAATTTTTAATTGAAAATTATAAAGAAATTGATCAAATTAAGGAT
CACTATGAACATTTAATTTATTCAAATAAAGATTTTATTTTCATTTTTAA
TCAATTTGATTTAAAAAAGAAAATATTATTACAAAAATAAAAAAAATATA
GTAATTATAATAATAAT

Gap no gap
Contig length 1017
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2073233
End point 2074250
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U07084
List of clone(s)

est1=VSK284E,1,1018
Translated Amino Acid sequence
lqshlqlhlqlqinll*nih*iiy*imqhfyvkhiyilvd*qdylikdyqniifynvlii
ll**iminy*smnll*yhlhl*iyikylsfn*inlanlkikiqiqiqiqiqiqiqiqikk
lnq*FKLTKYINEIAGALCYCEVNFKSIILYILASCITFKFKLYKESLESNTRAFKLLSS
LKQYHWSIDLLLNNLLIKLKLNETIDIVDGDGDTEIQYQKLLLKEKEEKEEKEYQNIIII
LIKYCILIDDKIRLSAILGDYNFQKIISIYFKNNDYVDCLIKSSNQFLIENYKEIDQIKD
HYEHLIYSNKDFIFIFNQFDLKKKILLQK*kkysnynnn


Translated Amino Acid sequence (All Frames)
Frame A:
lqshlqlhlqlqinll*nih*iiy*imqhfyvkhiyilvd*qdylikdyqniifynvlii
ll**iminy*smnll*yhlhl*iyikylsfn*inlanlkikiqiqiqiqiqiqiqiqikk
lnq*FKLTKYINEIAGALCYCEVNFKSIILYILASCITFKFKLYKESLESNTRAFKLLSS
LKQYHWSIDLLLNNLLIKLKLNETIDIVDGDGDTEIQYQKLLLKEKEEKEEKEYQNIIII
LIKYCILIDDKIRLSAILGDYNFQKIISIYFKNNDYVDCLIKSSNQFLIENYKEIDQIKD
HYEHLIYSNKDFIFIFNQFDLKKKILLQK*kkysnynnn


Frame B:
fnhiynyifnfk*iycrifik*yik*cntfm*ntfifw*inkii*sktirisfftmf*ls
cfnk**siikv*iffsiiftfkfi*niyhsir*iwqi*k*rykykyryrykykyryk*rn
*innsn*pni*mklqvhyvivklilnq*yyiy*qvvlhlnlnyiknh*nqilellnyyhh
*nniigqliyy*iiy*ln*n*mkllilltvtvilkfniknyy*kkkkrkkkknikill*y
*lnivy**mikldyqlf*viiisrklfqfilkimtmsiv*lnqvinf*lkiikkliklri
tmni*fiqikilfsflinli*krkyyyknkkniviiii


Frame C:
sitstttsstsnksiveyslnnilnnatllckthlyfgrltrlfnqrlseyhflqcfnyl
alinndqllkyesslvsssplnlykifiiqldkfgksknkdtntntdtdtntntdtnkei
esiiqinqiyk*ncrcimll*s*f*inniiyisklyyi*i*ii*riirikyssf*iiiii
ktislvn*fiik*fin*ikik*ny*yc*r*r*y*nsiskiiikrkrrerrkriskyyyni
n*ilyinr**n*iisyfr*l*fpenyfnlf*k**lcrlfn*ik*sifn*kl*rn*sn*gs
l*tfnlfk*rfyfhf*si*fkkeniitkikki**l***


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U07084-1 (Contig-U07084-1Q)
/CSM_Contig/Contig-U07084-1Q.Seq.d
(1017 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U07084-1 (Contig-U07084-1Q) /CSM_Contig/Conti... 581 e-166
Contig-U04577-1 (Contig-U04577-1Q) /CSM_Contig/Conti... 46 7e-05
Contig-U13053-1 (Contig-U13053-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U12417-1 (Contig-U12417-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U02481-1 (Contig-U02481-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U13981-1 (Contig-U13981-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U09307-1 (Contig-U09307-1Q) /CSM_Contig/Conti... 34 0.28
Contig-U11546-1 (Contig-U11546-1Q) /CSM_Contig/Conti... 32 1.1

>Contig-U07084-1 (Contig-U07084-1Q) /CSM_Contig/Contig-U07084-1Q.Seq.d
Length = 1017

Score = 581 bits (293), Expect = e-166
Identities = 293/293 (100%)
Strand = Plus / Plus


Query: 1 cttcaatcacatctacaactacatcttcaacttcaaataaatctattgtagaatattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttcaatcacatctacaactacatcttcaacttcaaataaatctattgtagaatattcat 60


Query: 61 taaataatatattaaataatgcaacacttttatgtaaaacacatttatattttggtagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaataatatattaaataatgcaacacttttatgtaaaacacatttatattttggtagat 120


Query: 121 taacaagattatttaatcaaagactatcagaatatcattttttacaatgttttaattatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taacaagattatttaatcaaagactatcagaatatcattttttacaatgttttaattatc 180


Query: 181 ttgctttaataaataatgatcaattattaaagtatgaatcttctttagtatcatcttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgctttaataaataatgatcaattattaaagtatgaatcttctttagtatcatcttcac 240


Query: 241 ctttaaatttatataaaatatttatcattcaattagataaatttggcaaatct 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctttaaatttatataaaatatttatcattcaattagataaatttggcaaatct 293


Score = 412 bits (208), Expect = e-115
Identities = 208/208 (100%)
Strand = Plus / Plus


Query: 353 taaagaaattgaatcaataattcaaattaaccaaatatataaatgaaattgcaggtgcat 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 taaagaaattgaatcaataattcaaattaaccaaatatataaatgaaattgcaggtgcat 412


Query: 413 tatgttattgtgaagttaattttaaatcaataatattatatatattagcaagttgtatta 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tatgttattgtgaagttaattttaaatcaataatattatatatattagcaagttgtatta 472


Query: 473 catttaaatttaaattatataaagaatcattagaatcaaatactcgagcttttaaattat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 catttaaatttaaattatataaagaatcattagaatcaaatactcgagcttttaaattat 532


Query: 533 tatcatcattaaaacaatatcattggtc 560
||||||||||||||||||||||||||||
Sbjct: 533 tatcatcattaaaacaatatcattggtc 560


Score = 319 bits (161), Expect = 3e-87
Identities = 161/161 (100%)
Strand = Plus / Plus


Query: 762 atcagctattttaggtgattataatttccagaaaattatttcaatttattttaaaaataa 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 atcagctattttaggtgattataatttccagaaaattatttcaatttattttaaaaataa 821


Query: 822 tgactatgtcgattgtttaattaaatcaagtaatcaatttttaattgaaaattataaaga 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 tgactatgtcgattgtttaattaaatcaagtaatcaatttttaattgaaaattataaaga 881


Query: 882 aattgatcaaattaaggatcactatgaacatttaatttatt 922
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aattgatcaaattaaggatcactatgaacatttaatttatt 922


Score = 123 bits (62), Expect = 4e-28
Identities = 62/62 (100%)
Strand = Plus / Plus


Query: 607 gaaactattgatattgttgacggtgacggtgatactgaaattcaatatcaaaaattatta 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gaaactattgatattgttgacggtgacggtgatactgaaattcaatatcaaaaattatta 666


Query: 667 tt 668
||
Sbjct: 667 tt 668


Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 997 tatagtaattataataataat 1017
|||||||||||||||||||||
Sbjct: 997 tatagtaattataataataat 1017


>Contig-U04577-1 (Contig-U04577-1Q) /CSM_Contig/Contig-U04577-1Q.Seq.d
Length = 728

Score = 46.1 bits (23), Expect = 7e-05
Identities = 33/35 (94%), Gaps = 1/35 (2%)
Strand = Plus / Plus


Query: 845 aatcaagtaatcaattt-ttaattgaaaattataa 878
||||||||||||| ||| |||||||||||||||||
Sbjct: 628 aatcaagtaatcactttattaattgaaaattataa 662


>Contig-U13053-1 (Contig-U13053-1Q) /CSM_Contig/Contig-U13053-1Q.Seq.d
Length = 996

Score = 40.1 bits (20), Expect = 0.005
Identities = 26/28 (92%)
Strand = Plus / Minus


Query: 470 ttacatttaaatttaaattatataaaga 497
||||||||||||||||||| |||||||
Sbjct: 773 ttacatttaaatttaaatttgataaaga 746


Score = 30.2 bits (15), Expect = 4.4
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 999 tagtaattataataataat 1017
||||||| |||||||||||
Sbjct: 274 tagtaataataataataat 292


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,778
Number of Sequences: 6905
Number of extensions: 36778
Number of successful extensions: 4172
Number of sequences better than 10.0: 675
length of query: 1017
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1001
effective length of database: 5,564,391
effective search space: 5569955391
effective search space used: 5569955391
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.11
Homology vs DNA
Query= Contig-U07084-1 (Contig-U07084-1Q) /CSM_Contig/Contig-U07084-1Q.Seq.d
(1017 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 543 0.0 5
(AU270937) Dictyostelium discoideum vegetative cDNA clone:VS... 543 0.0 2
(AU270938) Dictyostelium discoideum vegetative cDNA clone:VS... 291 e-169 4
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 42 9e-08 14
(AE001408) Plasmodium falciparum 3D7 chromosome 2 section 45... 38 5e-06 6
(AL844507) Plasmodium falciparum chromosome 8. 40 7e-06 11
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 40 2e-05 15
(AC004157) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 4e-05 10
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 38 4e-05 14
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 40 4e-05 9
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 36 1e-04 11
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 38 1e-04 9
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion... 36 2e-04 8
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 3e-04 12
(AX392736) Sequence 26 from Patent WO0212526. 42 3e-04 8
(AR707083) Sequence 26 from patent US 6933145. 42 3e-04 8
(X95276) Plasmodium falciparum complete gene map of plastid-... 40 4e-04 6
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 38 4e-04 9
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 38 5e-04 13
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 36 5e-04 14
(AL031745) Plasmodium falciparum DNA from MAL1P2. 38 7e-04 11
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 9e-04 12
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 9e-04 11
(AX344378) Sequence 225 from Patent WO0200926. 32 0.001 6
(AL844506) Plasmodium falciparum chromosome 7. 38 0.001 8
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 40 0.001 9
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 0.002 15
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 38 0.002 12
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 40 0.002 12
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 34 0.002 14
(AL844509) Plasmodium falciparum chromosome 13. 38 0.002 8
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 38 0.002 18
(CX978280) JGI_CAAP10713.fwd NIH_XGC_tropInt1 Xenopus (Silur... 56 0.003 1
(CX978279) JGI_CAAP10713.rev NIH_XGC_tropInt1 Xenopus (Silur... 56 0.003 1
(AM470238) Vitis vinifera, whole genome shotgun sequence, co... 42 0.003 4
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 38 0.003 8
(AC021264) Homo sapiens chromosome , clone RP11-14H1, comple... 46 0.003 5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.003 15
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 0.004 10
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.004 11
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 32 0.004 11
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 38 0.004 13
(CP000727) Clostridium botulinum A str. Hall, complete genome. 46 0.005 16
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.005 11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.007 17
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 46 0.007 16
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.007 14
(Z98551) Plasmodium falciparum MAL3P6. 36 0.007 10
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1... 34 0.007 14
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 46 0.007 16
(AY217738) Eimeria tenella apicoplast, complete genome. 36 0.008 7
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 34 0.010 13
(CS468836) Sequence 27 from Patent EP1748080. 34 0.011 9
(CS419313) Sequence 27 from Patent WO2006094836. 34 0.011 9
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 30 0.013 15
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.014 10
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 0.014 10
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.015 13
(AL034558) Plasmodium falciparum MAL3P2. 36 0.016 10
(AL034559) Plasmodium falciparum MAL3P7. 32 0.016 11
(AF160864) Tetrahymena pyriformis mitochondrial DNA, complet... 34 0.017 6
(AL034556) Plasmodium falciparum MAL3P5. 36 0.018 8
(BX248583) Blochmannia floridanus complete genome. 34 0.018 17
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 40 0.018 11
(AF165818) Guillardia theta nucleomorph chromosome 1, comple... 34 0.020 11
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.022 12
(AC115584) Dictyostelium discoideum chromosome 2 map complem... 38 0.022 7
(DV968374) GC06371 Gracilaria changii cDNA library Gracilari... 40 0.023 3
(AF466146) Melipona bicolor mitochondrial genome, partial se... 38 0.024 4
(AL035476) Plasmodium falciparum MAL4P3. 34 0.024 12
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.027 12
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 0.028 13
(AW155504) mgie0028I07f Rice blast infection stage cDNA libr... 34 0.029 4
(AY691414) Vryburgia amaryllidis cytochrome b (cytb) gene, p... 32 0.031 5
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 36 0.032 13
(AM629662) Entamoeba dispar GSS, clone dispar39h06.q1k. 32 0.034 4
(AC187031) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 38 0.034 6
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.037 12
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 32 0.041 10
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 34 0.041 10
(DX531418) GH_MBb0031J20f GH_MBb Gossypium hirsutum genomic ... 32 0.042 4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 0.043 13
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.043 12
(AX392734) Sequence 24 from Patent WO0212526. 38 0.046 7
(AR707081) Sequence 24 from patent US 6933145. 38 0.046 7
(AC133040) Homo sapiens 3 BAC RP11-342C2 (Roswell Park Cance... 40 0.047 5
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 36 0.049 8
(AE001398) Plasmodium falciparum 3D7 chromosome 2 section 35... 34 0.050 6
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 38 0.050 10
(EU597124) Artogeia melete mitochondrion, complete genome. 32 0.054 6
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.058 17
(AM466313) Vitis vinifera contig VV78X006575.3, whole genome... 48 0.060 2
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 34 0.061 12
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 0.062 12
(AX392737) Sequence 27 from Patent WO0212526. 34 0.064 8
(AR707084) Sequence 27 from patent US 6933145. 34 0.064 8
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 0.066 12
(CN755548) ID0AAA16AF08RM1 ApMS Acyrthosiphon pisum cDNA clo... 34 0.069 3
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 38 0.070 8
(AL035477) Plasmodium falciparum MAL4P4. 32 0.073 12

>(AC117075) Dictyostelium discoideum chromosome 2 map 5201047-5455781
strain AX4, complete sequence.
Length = 254733

Score = 543 bits (274), Expect(5) = 0.0
Identities = 274/274 (100%)
Strand = Plus / Plus


Query: 1 cttcaatcacatctacaactacatcttcaacttcaaataaatctattgtagaatattcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9208 cttcaatcacatctacaactacatcttcaacttcaaataaatctattgtagaatattcat 9267


Query: 61 taaataatatattaaataatgcaacacttttatgtaaaacacatttatattttggtagat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9268 taaataatatattaaataatgcaacacttttatgtaaaacacatttatattttggtagat 9327


Query: 121 taacaagattatttaatcaaagactatcagaatatcattttttacaatgttttaattatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9328 taacaagattatttaatcaaagactatcagaatatcattttttacaatgttttaattatc 9387


Query: 181 ttgctttaataaataatgatcaattattaaagtatgaatcttctttagtatcatcttcac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9388 ttgctttaataaataatgatcaattattaaagtatgaatcttctttagtatcatcttcac 9447


Query: 241 ctttaaatttatataaaatatttatcattcaatt 274
||||||||||||||||||||||||||||||||||
Sbjct: 9448 ctttaaatttatataaaatatttatcattcaatt 9481

Score = 291 bits (147), Expect(5) = 0.0
Identities = 147/147 (100%)
Strand = Plus / Plus


Query: 764 cagctattttaggtgattataatttccagaaaattatttcaatttattttaaaaataatg 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9970 cagctattttaggtgattataatttccagaaaattatttcaatttattttaaaaataatg 10029


Query: 824 actatgtcgattgtttaattaaatcaagtaatcaatttttaattgaaaattataaagaaa 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10030 actatgtcgattgtttaattaaatcaagtaatcaatttttaattgaaaattataaagaaa 10089


Query: 884 ttgatcaaattaaggatcactatgaac 910
|||||||||||||||||||||||||||
Sbjct: 10090 ttgatcaaattaaggatcactatgaac 10116

Score = 252 bits (127), Expect(5) = 0.0
Identities = 127/127 (100%)
Strand = Plus / Plus


Query: 397 gaaattgcaggtgcattatgttattgtgaagttaattttaaatcaataatattatatata 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9603 gaaattgcaggtgcattatgttattgtgaagttaattttaaatcaataatattatatata 9662


Query: 457 ttagcaagttgtattacatttaaatttaaattatataaagaatcattagaatcaaatact 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9663 ttagcaagttgtattacatttaaatttaaattatataaagaatcattagaatcaaatact 9722


Query: 517 cgagctt 523
|||||||
Sbjct: 9723 cgagctt 9729

Score = 97.6 bits (49), Expect(5) = 0.0
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 607 gaaactattgatattgttgacggtgacggtgatactgaaattcaatatc 655
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9813 gaaactattgatattgttgacggtgacggtgatactgaaattcaatatc 9861

Score = 42.1 bits (21), Expect(5) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 997 tatagtaattataataataat 1017
|||||||||||||||||||||
Sbjct: 10203 tatagtaattataataataat 10223

Score = 34.2 bits (17), Expect(11) = 0.006
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 152 atatcattttttacaat 168
|||||||||||||||||
Sbjct: 17929 atatcattttttacaat 17945

Score = 32.2 bits (16), Expect(11) = 0.006
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 796 attatttcaatttatt 811
||||||||||||||||
Sbjct: 57064 attatttcaatttatt 57079

Score = 32.2 bits (16), Expect(11) = 0.006
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 806 tttattttaaaaataa 821
||||||||||||||||
Sbjct: 61790 tttattttaaaaataa 61805

Score = 32.2 bits (16), Expect(11) = 0.006
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 998 atagtaattataataataat 1017
|||||||| |||||||||||
Sbjct: 218342 atagtaataataataataat 218361

Score = 30.2 bits (15), Expect(11) = 0.006
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 250 tatataaaatattta 264
|||||||||||||||
Sbjct: 36645 tatataaaatattta 36659

Score = 28.2 bits (14), Expect(11) = 0.006
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 438 atcaataatattat 451
||||||||||||||
Sbjct: 52415 atcaataatattat 52428

Score = 28.2 bits (14), Expect(11) = 0.006
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 475 tttaaatttaaatt 488
||||||||||||||
Sbjct: 54891 tttaaatttaaatt 54904

Score = 28.2 bits (14), Expect(11) = 0.006
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 858 atttttaattgaaa 871
||||||||||||||
Sbjct: 88930 atttttaattgaaa 88943

Score = 26.3 bits (13), Expect(11) = 0.006
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 167 atgttttaattat 179
|||||||||||||
Sbjct: 35373 atgttttaattat 35385

Score = 26.3 bits (13), Expect(11) = 0.006
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 427 gttaattttaaat 439
|||||||||||||
Sbjct: 46477 gttaattttaaat 46489

Score = 26.3 bits (13), Expect(11) = 0.006
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 876 taaagaaattgat 888
|||||||||||||
Sbjct: 169474 taaagaaattgat 169486

Score = 34.2 bits (17), Expect(13) = 0.032
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 61 taaataatatattaaat 77
|||||||||||||||||
Sbjct: 66737 taaataatatattaaat 66753

Score = 30.2 bits (15), Expect(13) = 0.032
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 794 aaattatttcaattt 808
|||||||||||||||
Sbjct: 199086 aaattatttcaattt 199100

Score = 30.2 bits (15), Expect(13) = 0.032
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 999 tagtaattataataataat 1017
||||||| |||||||||||
Sbjct: 230916 tagtaataataataataat 230934

Score = 28.2 bits (14), Expect(13) = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 79 atgcaacactttta 92
||||||||||||||
Sbjct: 93410 atgcaacactttta 93423

Score = 28.2 bits (14), Expect(13) = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 122 aacaagattattta 135
||||||||||||||
Sbjct: 125050 aacaagattattta 125063

Score = 28.2 bits (14), Expect(13) = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 475 tttaaatttaaatt 488
||||||||||||||
Sbjct: 145215 tttaaatttaaatt 145228

Score = 28.2 bits (14), Expect(13) = 0.032
Identities = 17/18 (94%)
Strand = Plus / Plus


Query: 490 tataaagaatcattagaa 507
|||||| |||||||||||
Sbjct: 167731 tataaacaatcattagaa 167748

Score = 28.2 bits (14), Expect(13) = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 809 attttaaaaataat 822
||||||||||||||
Sbjct: 230573 attttaaaaataat 230586

Score = 28.2 bits (14), Expect(13) = 0.032
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 836 gtttaattaaatca 849
||||||||||||||
Sbjct: 230690 gtttaattaaatca 230703

Score = 26.3 bits (13), Expect(13) = 0.032
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 51 gaatattcattaa 63
|||||||||||||
Sbjct: 45562 gaatattcattaa 45574

Score = 26.3 bits (13), Expect(13) = 0.032
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 135 aatcaaagactat 147
|||||||||||||
Sbjct: 140120 aatcaaagactat 140132

Score = 26.3 bits (13), Expect(13) = 0.032
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 246 aatttatataaaa 258
|||||||||||||
Sbjct: 140496 aatttatataaaa 140508

Score = 26.3 bits (13), Expect(13) = 0.032
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 608 aaactattgatat 620
|||||||||||||
Sbjct: 169938 aaactattgatat 169950

Score = 36.2 bits (18), Expect(12) = 0.32
Identities = 21/22 (95%)
Strand = Plus / Minus


Query: 434 ttaaatcaataatattatatat 455
||||||||||| ||||||||||
Sbjct: 202409 ttaaatcaatattattatatat 202388

Score = 30.2 bits (15), Expect(12) = 0.32
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1003 aattataataataat 1017
|||||||||||||||
Sbjct: 20578 aattataataataat 20564

Score = 30.2 bits (15), Expect(12) = 0.32
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 501 attagaatcaaatac 515
|||||||||||||||
Sbjct: 197489 attagaatcaaatac 197475

Score = 30.2 bits (15), Expect(12) = 0.32
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 197 tgatcaattattaaa 211
|||||||||||||||
Sbjct: 231032 tgatcaattattaaa 231018

Score = 28.2 bits (14), Expect(12) = 0.32
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 838 ttaattaaatcaagtaat 855
||||||||||||| ||||
Sbjct: 80576 ttaattaaatcaattaat 80559

Score = 28.2 bits (14), Expect(12) = 0.32
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 810 ttttaaaaataatg 823
||||||||||||||
Sbjct: 89236 ttttaaaaataatg 89223

Score = 26.3 bits (13), Expect(12) = 0.32
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 882 aattgatcaaatt 894
|||||||||||||
Sbjct: 47471 aattgatcaaatt 47459

Score = 26.3 bits (13), Expect(12) = 0.32
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 612 tattgatattgtt 624
|||||||||||||
Sbjct: 112313 tattgatattgtt 112301

Score = 26.3 bits (13), Expect(12) = 0.32
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 474 atttaaatttaaa 486
|||||||||||||
Sbjct: 199089 atttaaatttaaa 199077

Score = 26.3 bits (13), Expect(12) = 0.32
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 250 tatataaaatatt 262
|||||||||||||
Sbjct: 209628 tatataaaatatt 209616

Score = 26.3 bits (13), Expect(12) = 0.32
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 242 tttaaatttatat 254
|||||||||||||
Sbjct: 215538 tttaaatttatat 215526

Score = 26.3 bits (13), Expect(12) = 0.32
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 156 cattttttacaat 168
|||||||||||||
Sbjct: 251596 cattttttacaat 251584

Score = 32.2 bits (16), Expect(11) = 7.3
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 242 tttaaatttatataaa 257
||||||||||||||||
Sbjct: 104177 tttaaatttatataaa 104162

Score = 30.2 bits (15), Expect(11) = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 1003 aattataataataat 1017
|||||||||||||||
Sbjct: 39924 aattataataataat 39910

Score = 28.2 bits (14), Expect(11) = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 811 tttaaaaataatga 824
||||||||||||||
Sbjct: 51055 tttaaaaataatga 51042

Score = 28.2 bits (14), Expect(11) = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 474 atttaaatttaaat 487
||||||||||||||
Sbjct: 76801 atttaaatttaaat 76788

Score = 28.2 bits (14), Expect(11) = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 450 atatatattagcaa 463
||||||||||||||
Sbjct: 80391 atatatattagcaa 80378

Score = 28.2 bits (14), Expect(11) = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 224 tttagtatcatctt 237
||||||||||||||
Sbjct: 130638 tttagtatcatctt 130625

Score = 28.2 bits (14), Expect(11) = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 198 gatcaattattaaa 211
||||||||||||||
Sbjct: 173086 gatcaattattaaa 173073

Score = 28.2 bits (14), Expect(11) = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 64 ataatatattaaat 77
||||||||||||||
Sbjct: 199206 ataatatattaaat 199193

Score = 26.3 bits (13), Expect(11) = 7.3
Identities = 16/17 (94%)
Strand = Plus / Minus


Query: 862 ttaattgaaaattataa 878
|||||||||||| ||||
Sbjct: 45467 ttaattgaaaataataa 45451

Score = 26.3 bits (13), Expect(11) = 7.3
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 442 ataatattatata 454
|||||||||||||
Sbjct: 88281 ataatattatata 88269

Score = 26.3 bits (13), Expect(11) = 7.3
Identities = 13/13 (100%)
Strand = Plus / Minus


Query: 155 tcattttttacaa 167
|||||||||||||
Sbjct: 194068 tcattttttacaa 194056

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,030,138,726
Number of extensions: 79514996
Number of successful extensions: 7773794
Number of sequences better than 10.0: 882
Length of query: 1017
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 993
Effective length of database: 97,308,875,965
Effective search space: 96627713833245
Effective search space used: 96627713833245
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.23
Homology vs Protein
Query= Contig-U07084-1 (Contig-U07084-1Q) /CSM_Contig/Contig-U07084-1Q.Seq.d
(1017 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC117075_5(AC117075|pid:none) Dictyostelium discoideum chromosom... 291 e-125

>AC117075_5(AC117075|pid:none) Dictyostelium discoideum chromosome 2
map 5201047-5455781 strain AX4, complete sequence.
Length = 651

Score = 291 bits (746), Expect(2) = e-125
Identities = 149/195 (76%), Positives = 151/195 (77%)
Frame = +1

Query: 376 KLTKYINEIAGALCYCEVNFKSIILYILASCITFKFKLYKESLESNTRAFKLLSSLKQYH 555
++ KYINEIAGALCYCEVNFKSIILYILASCITFKFKLYKESLESNTRAFKLLSSLKQYH
Sbjct: 448 QINKYINEIAGALCYCEVNFKSIILYILASCITFKFKLYKESLESNTRAFKLLSSLKQYH 507

Query: 556 WSIDXXXXXXXXXXXXXETIDIVDGDGDTEIQYQXXXXXXXXXXXXXXYQNXXXXXXXXX 735
WSID ETIDIVDGDGDTEIQYQ YQN
Sbjct: 508 WSIDLLLNNLLIKLKLNETIDIVDGDGDTEIQYQKLLLKEKEEKEEKEYQNIIIILIKYC 567

Query: 736 XXXXXXXRLSAILGDYNFQKIISIYFKNNDYVDCLIKSSNQFLIENYKEIDQIKDHYEHL 915
RLSAILGDYNFQKIISIYFKNNDYVDCLIKSSNQFLIENYKEIDQIKDHYEHL
Sbjct: 568 ILIDDKIRLSAILGDYNFQKIISIYFKNNDYVDCLIKSSNQFLIENYKEIDQIKDHYEHL 627

Query: 916 IYSNKDFIFIFNQFD 960
IYSNKDFIFIFNQFD
Sbjct: 628 IYSNKDFIFIFNQFD 642

Score = 182 bits (463), Expect(2) = e-125
Identities = 95/117 (81%), Positives = 96/117 (82%)
Frame = +3

Query: 36 NKSIVEYSLNNILNNATLLCKTHLYFGRLTRLFNQRLSEYHFLQCFNYLALINNDQLLKY 215
NKSIVEYSLNNILNNATLLCKTHLYFGRLTRLFNQRLSEYHFLQCFNYLALINNDQLLKY
Sbjct: 335 NKSIVEYSLNNILNNATLLCKTHLYFGRLTRLFNQRLSEYHFLQCFNYLALINNDQLLKY 394

Query: 216 ESSLVSSSPLNLYKIFIIQLDKFGKSXXXXXXXXXXXXXXXXXXXXXEIESIIQINQ 386
ESSLVSSSPLNLYKIFIIQLDKFGKS EIESIIQIN+
Sbjct: 395 ESSLVSSSPLNLYKIFIIQLDKFGKSKNKDTNTNTDTDTNTNTDTNKEIESIIQINK 451

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 765,412,507
Number of extensions: 10377322
Number of successful extensions: 27611
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27603
Number of HSP's successfully gapped: 2
Length of query: 339
Length of database: 1,040,966,779
Length adjustment: 129
Effective length of query: 210
Effective length of database: 627,614,014
Effective search space: 131798942940
Effective search space used: 131798942940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.89 gvh: 0.38 alm: 0.34 top: 0.27 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U07084-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0