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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U07077-1
Contig ID Contig-U07077-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U07077-1 (Contig-U07077-1Q) /CSM_Contig/Contig-U07077-1Q.Seq.d
CTNTTCANCAACAAAATCAACTCCATCAATAGCAGAAACACCAACATCTA
CACCTCCAGTAACAACAACATCAACAAAAACTTTGGATGATTCATTACAA
TCACCAAAAAAATTAAAATCAAATAATGGACAACTAACAACAAGTACAGG
TTCACCACATCAAAGTAGATTATCATTGGGTGGATCTACTTTGGTTACAA
AAGATATACCTGAAAGTAGTAAGTAGTATATATATATTTATATTTACATA
CACAAATATTATTAATCATTTTTTACTAATAATTTGAAAAAATAAATAAA
TAGTTTTATTATCAAGAAAAGGTGAAAAAGAATTAATTGATACACCAAAA
AATTTTATTCAATTAAAAATTACATGTAAAGAAATGTTTCAAAATAGTGA
TAATCAAGACATAGATATTTTATTTTCAGATTTATCAAATTTTCCAATTA
AAGATGAAATTACTTATCAAAAATTTCTTACTACATCAAATCGTAATGTT
TTAATATGNTATTTTGAAGGTGAAAGAATTTTAGCATNATGGTAGTGAAG
NAAATTTTAGTTGATGTAACACCTTCAAAAAATATTTTATTAAAAGCTGG
TACTCAGAAATATA
Gap no gap
Contig length 614
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7677669
End point 7678283
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U07077
List of clone(s) 

est1=VSK256Z,1,615
Translated Amino Acid sequence 
xxqqnqlhq*qkhqhlhlq*qqhqqklwmihynhqkn*nqimdn*qqvqvhhikvdyhwv
dllwlqkiylkvvssiyififtytniinhfllii*knk*IVLLSRKGEKELIDTPKNFIQ
LKITCKEMFQNSDNQDIDILFSDLSNFPIKDEITYQKFLTTSNRNVLIXYFEGERILAXW
**xkf*lm*hlqkify*klvlrni
Translated Amino Acid sequence (All Frames) 
Frame A:
lfxnkinsinsrntniytssnnninknfg*fititkkikik*wttnnkyrfttsk*iiig
wiyfgykryt*k**vvyiylylhtqilliify**fekink*fyyqekvkkn*lihqkilf
n*klhvkkcfkiviikt*ifyfqiyqifqlkmklliknfllhqivmf*yxilkvkef*hx
gsexnfs*cntfkkyfikswysei


Frame B:
xsxtkstpsiaetptstppvtttstktlddslqspkklksnngqlttstgsphqsrlslg
gstlvtkdipessk*yiyiyiyihkyy*sfftnnlkk*insfiikkr*krin*ytkkfys
iknym*rnvsk***srhryfifrfikfsn*r*nylskisyyiks*cfnmxf*r*knfsxm
vvkxilvdvtpsknillkagtqky


Frame C:
xxqqnqlhq*qkhqhlhlq*qqhqqklwmihynhqkn*nqimdn*qqvqvhhikvdyhwv
dllwlqkiylkvvssiyififtytniinhfllii*knk*IVLLSRKGEKELIDTPKNFIQ
LKITCKEMFQNSDNQDIDILFSDLSNFPIKDEITYQKFLTTSNRNVLIXYFEGERILAXW
**xkf*lm*hlqkify*klvlrni
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U07077-1 (Contig-U07077-1Q)
/CSM_Contig/Contig-U07077-1Q.Seq.d
         (614 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U07077-1 (Contig-U07077-1Q) /CSM_Contig/Conti...   718  0.0
Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Conti...   553  e-158
Contig-U14022-1 (Contig-U14022-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U12241-1 (Contig-U12241-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U05349-1 (Contig-U05349-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13215-1 (Contig-U13215-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13100-1 (Contig-U13100-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12110-1 (Contig-U12110-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U11661-1 (Contig-U11661-1Q) /CSM_Contig/Conti...    38  0.011

>Contig-U07077-1 (Contig-U07077-1Q) /CSM_Contig/Contig-U07077-1Q.Seq.d
          Length = 614

 Score =  718 bits (362), Expect = 0.0
 Identities = 371/371 (100%)
 Strand = Plus / Plus

                                                                       
Query: 244 ttacatacacaaatattattaatcattttttactaataatttgaaaaaataaataaatag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttacatacacaaatattattaatcattttttactaataatttgaaaaaataaataaatag 303

                                                                       
Query: 304 ttttattatcaagaaaaggtgaaaaagaattaattgatacaccaaaaaattttattcaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttttattatcaagaaaaggtgaaaaagaattaattgatacaccaaaaaattttattcaat 363

                                                                       
Query: 364 taaaaattacatgtaaagaaatgtttcaaaatagtgataatcaagacatagatattttat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taaaaattacatgtaaagaaatgtttcaaaatagtgataatcaagacatagatattttat 423

                                                                       
Query: 424 tttcagatttatcaaattttccaattaaagatgaaattacttatcaaaaatttcttacta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tttcagatttatcaaattttccaattaaagatgaaattacttatcaaaaatttcttacta 483

                                                                       
Query: 484 catcaaatcgtaatgttttaatatgntattttgaaggtgaaagaattttagcatnatggt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 catcaaatcgtaatgttttaatatgntattttgaaggtgaaagaattttagcatnatggt 543

                                                                       
Query: 544 agtgaagnaaattttagttgatgtaacaccttcaaaaaatattttattaaaagctggtac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agtgaagnaaattttagttgatgtaacaccttcaaaaaatattttattaaaagctggtac 603

                      
Query: 604 tcagaaatata 614
           |||||||||||
Sbjct: 604 tcagaaatata 614


 Score =  394 bits (199), Expect = e-110
 Identities = 216/223 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttcancaacaaaatcaactccatcaatagcagaaacaccaacatctacacctccagtaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   ttcancaacaaaatcaactccatcaatagcagaaacaccaacatctacacctccagtaac 63

                                                                       
Query: 64  aacaacatcaacaaaaactttggatgattcattacaatcaccnnnnnnnttaaaatcaaa 123
           ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 64  aacaacatcaacaaaaactttggatgattcattacaatcaccaaaaaaattaaaatcaaa 123

                                                                       
Query: 124 taatggacaactaacaacaagtacaggttcaccacatcaaagtagattatcattgggtgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 taatggacaactaacaacaagtacaggttcaccacatcaaagtagattatcattgggtgg 183

                                                      
Query: 184 atctactttggttacaaaagatatacctgaaagtagtaagtag 226
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atctactttggttacaaaagatatacctgaaagtagtaagtag 226


>Contig-U12780-1 (Contig-U12780-1Q) /CSM_Contig/Contig-U12780-1Q.Seq.d
          Length = 617

 Score =  553 bits (279), Expect = e-158
 Identities = 297/301 (98%), Gaps = 2/301 (0%)
 Strand = Plus / Plus

                                                                       
Query: 304 ttttattatcaagaaaaggtgaaaaagaattaattgatacaccaaaaaattttattcaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttttattatcaagaaaaggtgaaaaagaattaattgatacaccaaaaaattttattcaat 182

                                                                       
Query: 364 taaaaattacatgtaaagaaatgtttcaaaatagtgataatcaagacatagatattttat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 taaaaattacatgtaaagaaatgtttcaaaatagtgataatcaagacatagatattttat 242

                                                                       
Query: 424 tttcagatttatcaaattttccaattaaagatgaaattacttatcaaaaatttcttacta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tttcagatttatcaaattttccaattaaagatgaaattacttatcaaaaatttcttacta 302

                                                                       
Query: 484 catcaaatcgtaatgttttaatatgntattttgaaggtgaaagaattttagcatnatggt 543
           ||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct: 303 catcaaatcgtaatgttttaatatgttattttgaaggtgaaagaattttag-ataatggt 361

                                                                       
Query: 544 agtgaagnaaattttagttgatgtaacaccttcaaaaaatattttattaaaagctggtac 603
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agtgaag-aaattttagttgatgtaacaccttcaaaaaatattttattaaaagctggtac 420

            
Query: 604 t 604
           |
Sbjct: 421 t 421


 Score =  210 bits (106), Expect = 1e-54
 Identities = 106/106 (100%)
 Strand = Plus / Plus

                                                                       
Query: 113 ttaaaatcaaataatggacaactaacaacaagtacaggttcaccacatcaaagtagatta 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17  ttaaaatcaaataatggacaactaacaacaagtacaggttcaccacatcaaagtagatta 76

                                                         
Query: 173 tcattgggtggatctactttggttacaaaagatatacctgaaagta 218
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  tcattgggtggatctactttggttacaaaagatatacctgaaagta 122


>Contig-U14022-1 (Contig-U14022-1Q) /CSM_Contig/Contig-U14022-1Q.Seq.d
          Length = 991

 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 61  aacaacaacatcaacaaaaactt 83
           |||||||||||||||||||||||
Sbjct: 420 aacaacaacatcaacaaaaactt 442


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,875
Number of Sequences: 6905
Number of extensions: 19875
Number of successful extensions: 4180
Number of sequences better than 10.0: 523
length of query: 614
length of database: 5,674,871
effective HSP length: 16
effective length of query: 598
effective length of database: 5,564,391
effective search space: 3327505818
effective search space used: 3327505818
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U07077-1 (Contig-U07077-1Q) /CSM_Contig/Contig-U07077-1Q.Seq.d
         (614 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270891) Dictyostelium discoideum vegetative cDNA clone:VS...   634   0.0    3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...   488   0.0    4
(BJ337161) Dictyostelium discoideum cDNA clone:dda56a14, 5' ...   452   0.0    3
(CP000049) Borrelia turicatae 91E135, complete genome.             38   2e-05  13
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    38   6e-04  11
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.002  17
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.003  8
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   0.003  8
(AC195665) Pan troglodytes BAC clone CH251-359N21 from chrom...    38   0.009  5
(CR354538) Zebrafish DNA sequence from clone CH211-16K18 in ...    42   0.023  3
(CR936518) Zebrafish DNA sequence from clone DKEY-27E18 in l...    46   0.054  4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.058  11
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.063  8
(AC191698) Pan troglodytes BAC clone CH251-641G7 from chromo...    40   0.066  7
(AC175964) Strongylocentrotus purpuratus clone R3-3035F23, W...    42   0.071  3
(CU914563) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.094  1
(EB943252) 12346909 ZF34 Danio rerio cDNA clone 3416912, mRN...    50   0.094  1
(EB938451) 13324678 ZF34 Danio rerio cDNA clone 3409491, mRN...    50   0.094  1
(DV173531) ZM_BFb0176J07.f ZM_BFb Zea mays cDNA 3', mRNA seq...    50   0.094  1
(BM005413) fq88g07.x3 Zebrafish neuronal Danio rerio cDNA cl...    50   0.094  1
(BI534233) fr88a09.x1 zebrafish adult brain Danio rerio cDNA...    50   0.094  1
(FK059435) XABT123485.g1 Gateway compatible cien cDNA librar...    50   0.094  1
(AC137804) Homo sapiens chromosome 16 clone RP11-78G5, WORKI...    42   0.10   5
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    34   0.11   6
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    38   0.11   13
(AC121155) Homo sapiens BAC clone RP11-469P13 from 4, comple...    36   0.12   4
(AC102625) Mus musculus chromosome 8, clone RP23-453E3, comp...    42   0.12   3
(AC129319) Mus musculus BAC clone RP24-127J16 from chromosom...    42   0.12   5
(AM450437) Vitis vinifera contig VV78X104935.5, whole genome...    36   0.13   3
(AP000729) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    42   0.14   2
(CT009656) Medicago truncatula chromosome 5 clone mth2-154o1...    36   0.14   6
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    40   0.14   4
(AE017308) Mycoplasma mobile 163K complete genome.                 32   0.15   14
(AX344551) Sequence 2 from Patent WO0200932.                       38   0.15   9
(CS468877) Sequence 68 from Patent EP1748080.                      38   0.16   8
(CS419354) Sequence 68 from Patent WO2006094836.                   38   0.16   8
(AC225545) Medicago truncatula clone mth2-77a2, WORKING DRAF...    36   0.16   8
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    34   0.16   6
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   0.17   10
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    34   0.17   7
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    38   0.18   11
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    36   0.18   8
(BV549849) S215P60905RD4.T0 Clara Pan troglodytes troglodyte...    40   0.20   2
(AC174882) Strongylocentrotus purpuratus clone R3-1113G17, W...    34   0.20   8
(AL596026) Zebrafish DNA sequence from clone BUSM1-234G15 in...    42   0.20   6
(FH959376) CHO_OF6770xh21r1.ab1 CHO_OF6 Nicotiana tabacum ge...    38   0.21   2
(AC136881) Sus scrofa clone RP44-121P4, WORKING DRAFT SEQUEN...    34   0.22   2
(AF466304) Dictyostelium discoideum ABC transporter AbcB1 (a...    36   0.22   4
(AC136886) Sus scrofa clone RP44-510H19, WORKING DRAFT SEQUE...    34   0.22   2
(AC173358) Strongylocentrotus purpuratus clone R3-1116I4, WO...    34   0.22   2
(CU467567) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.22   5
(AM464540) Vitis vinifera contig VV78X131805.7, whole genome...    38   0.23   3
(AB020872) Homo sapiens genomic DNA of 9q32 anti-oncogene of...    40   0.23   5
(EJ791311) 1093017378763 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.24   3
(AC196316) Myotis lucifugus clone CH235-265A20, WORKING DRAF...    36   0.25   4
(AC087325) Trypanosoma brucei chromosome 4 clone RPCI93-29M1...    46   0.25   3
(DU926870) 346317 Tomato EcoRI BAC Library Solanum lycopersi...    42   0.25   2
(AM477105) Vitis vinifera contig VV78X264928.3, whole genome...    36   0.26   2
(CU861930) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.29   5
(AC139159) Mus musculus BAC clone RP23-119I13 from 8, comple...    40   0.29   6
(AL929201) Zebrafish DNA sequence from clone CH211-66G24 in ...    40   0.29   6
(AL354794) Human DNA sequence from clone RP11-203L2 on chrom...    40   0.29   5
(AC153875) Mus musculus 6 BAC RP23-218N14 (Roswell Park Canc...    36   0.29   6
(AF321234) Mus musculus strain C57BL/6J chromosome 7 clone R...    40   0.30   5
(EK385745) 1095469482341 Global-Ocean-Sampling_GS-31-01-01-1...    32   0.31   3
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    40   0.33   7
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   0.33   7
(U97194) Caenorhabditis elegans cosmid C37A2, complete seque...    38   0.36   5
(AC153360) Mus musculus BAC clone RP23-321I6 from chromosome...    48   0.37   1
(AC122332) Mus musculus BAC clone RP23-346G14 from chromosom...    48   0.37   1
(CT967313) M.truncatula DNA sequence from clone MTH2-168B7 o...    48   0.37   1
(AC114250) Rattus norvegicus clone CH230-343H5, WORKING DRAF...    48   0.37   1
(AC112879) Rattus norvegicus clone CH230-50J10, *** SEQUENCI...    48   0.37   1
(AC101452) Mus musculus clone RP23-184O6, LOW-PASS SEQUENCE ...    48   0.37   1
(AC093970) Rattus norvegicus clone CH230-5K17, *** SEQUENCIN...    48   0.37   1
(AZ414962) 1M0189P02R Mouse 10kb plasmid UUGC1M library Mus ...    48   0.37   1
(ER601820) 1093016249495 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.37   1
(EK305206) 1095462378816 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.37   1
(CR327918) mte1-56B20RM1 BAC end, cultivar Jemalong A17 of M...    48   0.37   1
(CG966179) MBEBK04TR mth2 Medicago truncatula genomic clone ...    48   0.37   1
(DY665214) SS_CP_10_D05 SS_CP Senecio squalidus subsp. squal...    48   0.37   1
(DY658804) SS_MF_02_E08 SS_MF Senecio squalidus subsp. squal...    48   0.37   1
(DN808644) 76969428 Sea Urchin primary mesenchyme cell cDNA ...    48   0.37   1
(FF785052) XABT82868.fwd Gateway compatible cien cDNA librar...    48   0.37   1
(FF785051) XABT82868.rev Gateway compatible cien cDNA librar...    48   0.37   1
(AE017245) Mycoplasma synoviae 53, complete genome.                48   0.37   1
(AC175225) Atelerix albiventris clone LB4-376J2, WORKING DRA...    34   0.37   7
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   0.39   12
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.39   11
(AM446043) Vitis vinifera, whole genome shotgun sequence, co...    44   0.41   2
(AL355073) Human chromosome 14 DNA sequence BAC R-930O11 of ...    40   0.44   5
(DD164505) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              38   0.44   4
(AX695725) Sequence 1352 from Patent WO03008583.                   38   0.44   4
(AU284550) Dictyostelium discoideum gamete cDNA clone:FC-BC1...    38   0.46   3
(AC159111) Pan troglodytes BAC clone CH251-421L18 from chrom...    36   0.46   4
(AC215373) Solanum lycopersicum chromosome 2 clone C02HBa006...    34   0.47   8
(CR318617) Zebrafish DNA sequence from clone DKEY-122H9 in l...    34   0.48   4
(AP000868) Homo sapiens genomic DNA, chromosome 11q, clone:R...    38   0.48   3
(AC099692) Mus musculus chromosome 13, clone RP23-198N22, co...    42   0.52   6
(AC091885) Homo sapiens chromosome 5 clone RP11-116O11, comp...    34   0.52   4

>(AU270891) Dictyostelium discoideum vegetative cDNA clone:VSK256,
           3' end single read.
          Length = 615

 Score =  634 bits (320), Expect(3) = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Plus


Query: 286 gaaaaaataaataaatagttttattatcaagaaaaggtgaaaaagaattaattgatacac 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaaaaaataaataaatagttttattatcaagaaaaggtgaaaaagaattaattgatacac 345


Query: 346 caaaaaattttattcaattaaaaattacatgtaaagaaatgtttcaaaatagtgataatc 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 caaaaaattttattcaattaaaaattacatgtaaagaaatgtttcaaaatagtgataatc 405


Query: 406 aagacatagatattttattttcagatttatcaaattttccaattaaagatgaaattactt 465
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aagacatagatattttattttcagatttatcaaattttccaattaaagatgaaattactt 465


Query: 466 atcaaaaatttcttactacatcaaatcgtaatgttttaatatgntattttgaaggtgaaa 525
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 atcaaaaatttcttactacatcaaatcgtaatgttttaatatgntattttgaaggtgaaa 525


Query: 526 gaattttagcatnatggtagtgaagnaaattttagttgatgtaacaccttcaaaaaatat 585
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattttagcatnatggtagtgaagnaaattttagttgatgtaacaccttcaaaaaatat 585


Query: 586 tttattaaaagctggtactcagaaatata 614
           |||||||||||||||||||||||||||||
Sbjct: 586 tttattaaaagctggtactcagaaatata 614

 Score =  226 bits (114), Expect(3) = 0.0
 Identities = 114/114 (100%)
 Strand = Plus / Plus


Query: 113 ttaaaatcaaataatggacaactaacaacaagtacaggttcaccacatcaaagtagatta 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 ttaaaatcaaataatggacaactaacaacaagtacaggttcaccacatcaaagtagatta 172


Query: 173 tcattgggtggatctactttggttacaaaagatatacctgaaagtagtaagtag 226
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tcattgggtggatctactttggttacaaaagatatacctgaaagtagtaagtag 226

 Score =  196 bits (99), Expect(3) = 0.0
 Identities = 102/102 (100%)
 Strand = Plus / Plus


Query: 4   ttcancaacaaaatcaactccatcaatagcagaaacaccaacatctacacctccagtaac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4   ttcancaacaaaatcaactccatcaatagcagaaacaccaacatctacacctccagtaac 63


Query: 64  aacaacatcaacaaaaactttggatgattcattacaatcacc 105
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  aacaacatcaacaaaaactttggatgattcattacaatcacc 105

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 849,662,352
Number of extensions: 64845899
Number of successful extensions: 8529206
Number of sequences better than 10.0: 701
Length of query: 614
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 591
Effective length of database: 93,106,754,628
Effective search space: 55026091985148
Effective search space used: 55026091985148
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U07077-1 (Contig-U07077-1Q) /CSM_Contig/Contig-U07077-1Q.Seq.d
         (614 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116977_32(AC116977|pid:none) Dictyostelium discoideum chromoso...   148   2e-64
EU770222_5(EU770222|pid:none) Mycobacterium phage Predator, comp...    34   3.7

>AC116977_32(AC116977|pid:none) Dictyostelium discoideum chromosome
           2 map 5515173-5817331 strain AX4, complete sequence.
          Length = 2284

 Score =  148 bits (374), Expect(3) = 2e-64
 Identities = 73/74 (98%), Positives = 73/74 (98%)
 Frame = +3

Query: 312 SRKGEKELIDTPKNFIQLKITCKEMFQNSDNQDIDILFSDLSNFPIKDEITYQKFLTTSN 491
           SRKGEKELIDTPKNFIQLKITCKEMFQNSDNQDIDILFSDLSNFPIKDEITYQKFLTTSN
Sbjct: 90  SRKGEKELIDTPKNFIQLKITCKEMFQNSDNQDIDILFSDLSNFPIKDEITYQKFLTTSN 149

Query: 492 RNVLIXYFEGERIL 533
           RNVLI YFEGERIL
Sbjct: 150 RNVLICYFEGERIL 163

 Score =  103 bits (256), Expect(3) = 2e-64
 Identities = 55/71 (77%), Positives = 55/71 (77%)
 Frame = +2

Query: 5   SXTKSTPSIAEXXXXXXXXXXXXXXXLDDSLQSPKKLKSNNGQLTTSTGSPHQSRLSLGG 184
           S TKSTPSIAE               LDDSLQSPKKLKSNNGQLTTSTGSPHQSRLSLGG
Sbjct: 16  STTKSTPSIAETPTSTPPVTTTSTKTLDDSLQSPKKLKSNNGQLTTSTGSPHQSRLSLGG 75

Query: 185 STLVTKDIPES 217
           STLVTKDIPES
Sbjct: 76  STLVTKDIPES 86

 Score = 38.9 bits (89), Expect(3) = 2e-64
 Identities = 18/20 (90%), Positives = 19/20 (95%)
 Frame = +2

Query: 554 ILVDVTPSKNILLKAGTQKY 613
           ILVDVTPSKNILLKAGT +Y
Sbjct: 170 ILVDVTPSKNILLKAGTSEY 189

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 704,686,400
Number of extensions: 11359242
Number of successful extensions: 18803
Number of sequences better than 10.0: 2
Number of HSP's gapped: 18793
Number of HSP's successfully gapped: 4
Length of query: 204
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 82
Effective length of database: 650,044,009
Effective search space: 53303608738
Effective search space used: 53303608738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.63  gvh: 0.23  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U07077-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0