Contig-U01465-1
Contig ID Contig-U01465-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01465-1 (Contig-U01465-1Q) /CSM_Contig/Contig-U01465-1Q.Seq.d
AAAAAAATAAAAAATAAAAATAAAAAAAAGTCAAAAAAATATAAATAAAA
ATAAAATACATATATATATACATATATATATATATATGTATATTTATTTA
TTTAATTGAAGGAATATATATCAGAGTAACATTAACTTAAAAATTTTTTT
TTTTTTGGAAAAAAAAAATAAAATAAAAAAATAACAAAAAAAAAAAAAAT
AATAAAAAAATAAAATGGAAAAAACTGTAACATTAGGTGAGCAATT----
------AGCAGCAACAACAACAACTTCAATAACAACCACATCAACATCAT
CAACAACAACAACAACAACAATTGATAATAATACAAATAGTAGTATTAGT
AGTGGTAATGGTGATGATACTTCATCTTCATCTAGCGATGATGAAGATGA
TGATAGTGGTGATGGTTCAAATTCTGGTTCATCCTCATCATCGTCAGCAA
CAAAATCAAATCTTCCATTAGCTGATATATCTCAATTCTCTGGATGCAGA
TATGATTATGCAATGAGACCTAAATTTCATATCACTGAATTTGGTCCATG
GTTGTTAACTGCTCATTCAAGTTATTTCCTTTCAAAAGAAGTTTTAAATT
TTATTGGTTTAAATTTAAATTAAATTTAATAATCCAAGTAGTAATAACAA
GTAATAATAATAATAATGCAATCAAAAAGCAAATTTGCTTTAAATCTAAT
ATTTATTTATATATATACATTCAATCTTATTTATTTATTTAATATAATTT
TATTTAGTTTTATTTTTTAATTAAAAAAAAAATAATAAAAAAAATAAAAA
ATAAAAAAAAGTATTC

Gap gap included
Contig length 806
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3066408
End point 3067215
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U01465
List of clone(s)

est1=SLK224F,1,247
est2=SSB704Z,248,807
est3=SLK224Z,636,808
Translated Amino Acid sequence
kk*kikikksqkninknkihiyihiyiymyiylfn*rniyqsninlkiffflekknkikk
*qkkkk**KNKMEKTVTLGEQ---

---AATTTTSITTTSTSSTTTTTTIDNNTNSSISSGNGDDTSSSSSDDEDDDSGDGSNSG
SSSSSSATKSNLPLADISQFSGCRYDYAMRPKFHITEFGPWLLTAHSSYFLSKEVLNFIG
LNLN*i**sk***qviiiimqskskfalnlifiyiytfnliylfniilfsfif*lkkk**
kk*kikksi


Translated Amino Acid sequence (All Frames)
Frame A:
kkiknknkkkskkyk*k*ntyiytyiyiyvylfi*lkeyise*h*lknffffgkkk*nkk
itkkkkiikk*ngkncnir*ai---

---ssnnnnfnnnhiniinnnnnnn***yk**y**w*w**yfifi*r**r***w*wfkfw
filiivsnkikssis*yisilwmqi*lcnet*isyh*iwsmvvncsfklfpfkrsfkfyw
fkfklnliiqvvitsnnnnnaikkqicfksniylyiyiqsylfi*ynfi*fyflikkkii
kkiknkkky

Frame B:
kk*kikikksqkninknkihiyihiyiymyiylfn*rniyqsninlkiffflekknkikk
*qkkkk**KNKMEKTVTLGEQ---

---AATTTTSITTTSTSSTTTTTTIDNNTNSSISSGNGDDTSSSSSDDEDDDSGDGSNSG
SSSSSSATKSNLPLADISQFSGCRYDYAMRPKFHITEFGPWLLTAHSSYFLSKEVLNFIG
LNLN*i**sk***qviiiimqskskfalnlifiyiytfnliylfniilfsfif*lkkk**
kk*kikksi

Frame C:
knkk*k*kkvkki*ikikyiyiyiyiyicifiyliegiyirvtlt*kffffwkkkik*kn
nkkkknnkkikwkkl*h*vsn---

---qqqqqlq*qphqhhqqqqqqqliiiqivvlvvvmvmilhlhlammkmmivvmvqilv
hphhrqqqnqifh*liylnsldadmimq*dlnfislnlvhgc*lliqvisfqkkf*illv
*i*ikfnnpssnnk*****cnqkanll*i*ylfiyihsilfiyli*fylvlffn*kknnk
knkk*kkvf

own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01465-1 (Contig-U01465-1Q)
/CSM_Contig/Contig-U01465-1Q.Seq.d
(816 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01465-1 (Contig-U01465-1Q) /CSM_Contig/Conti... 535 e-152
Contig-U05943-1 (Contig-U05943-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U03850-1 (Contig-U03850-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U12770-1 (Contig-U12770-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11622-1 (Contig-U11622-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U11485-1 (Contig-U11485-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U09794-1 (Contig-U09794-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U14802-1 (Contig-U14802-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U12480-1 (Contig-U12480-1Q) /CSM_Contig/Conti... 38 0.020
Contig-U12203-1 (Contig-U12203-1Q) /CSM_Contig/Conti... 38 0.020

>Contig-U01465-1 (Contig-U01465-1Q) /CSM_Contig/Contig-U01465-1Q.Seq.d
Length = 816

Score = 535 bits (270), Expect = e-152
Identities = 270/270 (100%)
Strand = Plus / Plus


Query: 322 ttgataataatacaaatagtagtattagtagtggtaatggtgatgatacttcatcttcat 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttgataataatacaaatagtagtattagtagtggtaatggtgatgatacttcatcttcat 381


Query: 382 ctagcgatgatgaagatgatgatagtggtgatggttcaaattctggttcatcctcatcat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctagcgatgatgaagatgatgatagtggtgatggttcaaattctggttcatcctcatcat 441


Query: 442 cgtcagcaacaaaatcaaatcttccattagctgatatatctcaattctctggatgcagat 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cgtcagcaacaaaatcaaatcttccattagctgatatatctcaattctctggatgcagat 501


Query: 502 atgattatgcaatgagacctaaatttcatatcactgaatttggtccatggttgttaactg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 atgattatgcaatgagacctaaatttcatatcactgaatttggtccatggttgttaactg 561


Query: 562 ctcattcaagttatttcctttcaaaagaag 591
||||||||||||||||||||||||||||||
Sbjct: 562 ctcattcaagttatttcctttcaaaagaag 591


Score = 71.9 bits (36), Expect = 1e-12
Identities = 36/36 (100%)
Strand = Plus / Plus


Query: 668 gcaatcaaaaagcaaatttgctttaaatctaatatt 703
||||||||||||||||||||||||||||||||||||
Sbjct: 668 gcaatcaaaaagcaaatttgctttaaatctaatatt 703


Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 122 cagagtaacattaacttaaaaa 143
||||||||||||||||||||||
Sbjct: 122 cagagtaacattaacttaaaaa 143


Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 225 ctgtaacattaggtgagcaatt 246
||||||||||||||||||||||
Sbjct: 225 ctgtaacattaggtgagcaatt 246


Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 676 aaagcaaatttgcttt 691
||||||||||||||||
Sbjct: 691 aaagcaaatttgcttt 676


>Contig-U05943-1 (Contig-U05943-1Q) /CSM_Contig/Contig-U05943-1Q.Seq.d
Length = 870

Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 358 atggtgatgatacttcatcttcatct 383
||||||||||| ||||||||||||||
Sbjct: 698 atggtgatgattcttcatcttcatct 723


Score = 30.2 bits (15), Expect = 4.9
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 347 tagtagtggtaatggtgat 365
||||||||||||| |||||
Sbjct: 513 tagtagtggtaatagtgat 531


>Contig-U03850-1 (Contig-U03850-1Q) /CSM_Contig/Contig-U03850-1Q.Seq.d
Length = 611

Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus


Query: 387 gatgatgaagatgatgatagtggtga 412
||||| ||||||||||||||||||||
Sbjct: 555 gatgacgaagatgatgatagtggtga 580


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8324
Number of Sequences: 8361
Number of extensions: 8324
Number of successful extensions: 1509
Number of sequences better than 10.0: 299
length of query: 816
length of database: 7,895,291
effective HSP length: 16
effective length of query: 800
effective length of database: 7,761,515
effective search space: 6209212000
effective search space used: 6209212000
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.28
Homology vs DNA
Query= Contig-U01465-1 (Contig-U01465-1Q) /CSM_Contig/Contig-U01465-1Q.Seq.d
(816 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU037277) Dictyostelium discoideum slug cDNA, clone SSB704. 535 e-148 1
(AC181155) Strongylocentrotus purpuratus clone R3-16C24, WOR... 52 8e-06 2
(AC200928) Strongylocentrotus purpuratus clone R3-1020E11, W... 52 8e-06 2
(AC138376) Mus musculus chromosome 7, clone RP23-53O7, compl... 48 4e-04 2
(EY310559) CAWX22218.rev CAWX Helobdella robusta Primary Ear... 48 5e-04 2
(CT009576) Mouse DNA sequence from clone RP23-36H10 on chrom... 42 0.002 2
(AU060511) Dictyostelium discoideum slug cDNA, clone SLK224. 44 0.002 2
(AC190424) Pan troglodytes BAC clone CH251-258A7 from chromo... 44 0.006 2
(AC099782) Homo sapiens chromosome 3 clone RP11-852E15, comp... 36 0.022 2
(AC073482) Homo sapiens chromosome 1 clone RP11-765A6, WORKI... 36 0.022 2
(AC168499) Strongylocentrotus purpuratus clone R3-3117D2, WO... 40 0.022 2
(AC177212) Strongylocentrotus purpuratus clone R3-40F11, WOR... 36 0.022 2
(AC181935) Strongylocentrotus purpuratus clone R3-1009F04, W... 42 0.023 2
(AL596210) Human DNA sequence from clone RP11-92O17 on chrom... 36 0.023 2
(EY388143) CAXA7140.fwd CAXA Helobdella robusta Subtracted L... 44 0.028 2
(EY364270) CAWZ9239.fwd CAWZ Helobdella robusta Primary Late... 44 0.028 2
(FJ493499) Pyramimonas parkeae chloroplast, complete genome. 52 0.034 1
(AC006348) Homo sapiens PAC clone RP5-876K2 from 7, complete... 52 0.034 1
(AC121709) Rattus norvegicus clone CH230-173P15, WORKING DRA... 52 0.034 1
(AC096175) Rattus norvegicus clone CH230-11N23, WORKING DRAF... 52 0.034 1
(AC177673) Strongylocentrotus purpuratus clone R3-1017H11, W... 52 0.034 1
(AL008636) Human DNA sequence from clone CTA-722E9 on chromo... 48 0.038 2
(AU269997) Dictyostelium discoideum vegetative cDNA clone:VS... 44 0.048 2
(AU269996) Dictyostelium discoideum vegetative cDNA clone:VS... 44 0.055 2
(FM170376) Oryzias latipes EST, clone M066--H8_050. 48 0.071 2
(AC096439) Rattus norvegicus clone CH230-128H14, WORKING DRA... 36 0.082 2
(AC184391) Strongylocentrotus purpuratus clone R3-3099P21, W... 40 0.082 2
(AC181547) Strongylocentrotus purpuratus clone R3-1109O21, W... 40 0.083 2
(AC020895) Homo sapiens chromosome 19 clone CTC-312O10, comp... 36 0.083 2
(AC025278) Homo sapiens chromosome 19 clone RP11-1137G4, com... 36 0.083 2
(AP000590) Homo sapiens genomic DNA, chromosome 11 clone:CMB... 40 0.084 2
(AL365401) Human DNA sequence from clone RP11-489M19 on chro... 36 0.084 2
(AC231719) Choloepus hoffmanni clone CH281-88O24, WORKING DR... 34 0.085 2
(AC140118) Homo sapiens 12 BAC RP13-507P19 (Roswell Park Can... 38 0.086 2
(AC105764) Caenorhabditis briggsae cosmid CB026A10, complete... 36 0.087 2
(EY329335) CAWY2264.fwd CAWY Helobdella robusta Subtracted E... 46 0.099 2
(AC179628) Strongylocentrotus purpuratus clone R3-1025N13, W... 38 0.10 5
(AQ855643) CpG1643B CpIOWAgDNA1 Cryptosporidium parvum genom... 38 0.10 2
(AC180304) Strongylocentrotus purpuratus clone R3-3119N03, W... 50 0.13 1
(EB269415) MCC014-F-027636-501 Non-Normalized MCC Neurons 1 ... 50 0.13 1
(DY892658) CeleSEQ11248 Cunninghamella elegans pBluescript (... 50 0.13 1
(DW282483) UI-S-HH0-adj-j-11-0-UI.s1 UI-S-HH0 Euprymna scolo... 50 0.13 1
(BI501640) rm03b03.y1 Meloidogyne arenaria egg pAMP1 v1 Chia... 50 0.13 1
(BF707806) A390_LE Aplysia metacerebral cell cDNA library Ap... 50 0.13 1
(CP000524) Bartonella bacilliformis KC583, complete genome. 50 0.13 1
(BX119919) Human DNA sequence from clone RP11-987D21 on chro... 40 0.15 3
(AC114457) Rattus norvegicus clone CH230-253P5, WORKING DRAF... 34 0.30 2
(AC129332) Mus musculus BAC clone RP23-91I19 from chromosome... 38 0.30 2
(AC125394) Pan troglodytes clone rp43-45i3, complete sequence. 34 0.30 2
(AC124756) Mus musculus BAC clone RP23-115J2 from 6, complet... 36 0.30 2
(AC162393) Bos taurus clone CH240-122H5, WORKING DRAFT SEQUE... 38 0.30 2
(AC079438) Mus musculus strain C57BL/6J chromosome 6 clone r... 36 0.30 2
(AC196314) Myotis lucifugus clone CH235-232E12, WORKING DRAF... 34 0.30 2
(AC104981) Homo sapiens chromosome 17, clone RP11-316M20, co... 34 0.30 2
(AC180145) Strongylocentrotus purpuratus clone R3-4004A12, W... 36 0.30 2
(AC194547) Pan troglodytes BAC clone CH251-492D24 from chrom... 34 0.30 2
(AC134481) Rattus norvegicus clone CH230-270E23, WORKING DRA... 34 0.30 2
(AC097640) Homo sapiens chromosome 17 clone RP11-244H9 map 1... 34 0.30 2
(AC084361) Homo sapiens 12 BAC RP11-364C11 (Roswell Park Can... 36 0.30 2
(AC018688) Homo sapiens BAC clone RP11-462H3 from UL, comple... 34 0.30 2
(AC016151) Homo sapiens chromosome 3 clone RP11-141N10, WORK... 34 0.30 2
(AC193870) Pan troglodytes BAC clone CH251-555J5 from chromo... 36 0.30 2
(AC016147) Homo sapiens chromosome 3 clone RP11-38N24, WORKI... 34 0.30 2
(AC023412) Homo sapiens chromosome 1 clone RP11-82K17 map 1,... 34 0.30 2
(AC179987) Strongylocentrotus purpuratus clone R3-17G12, WOR... 38 0.30 2
(AC168658) Strongylocentrotus purpuratus clone R3-3017A12, W... 36 0.31 2
(AC193802) Pan troglodytes BAC clone CH251-325I18 from chrom... 36 0.31 2
(AC106870) Homo sapiens BAC clone RP11-223F18 from 2, comple... 34 0.31 2
(Z83838) Human DNA sequence from clone RP1-127B20 on chromos... 36 0.31 2
(AL591901) Human DNA sequence from clone RP11-400C4 on chrom... 34 0.31 2
(AC198976) Zea mays chromosome 4 clone CH201-56K1; ZMMBBc005... 44 0.31 2
(AC149936) Strongylocentrotus purpuratus clone R3-17A13, WOR... 38 0.33 2
(AC173350) Strongylocentrotus purpuratus clone R3-3047I2, WO... 44 0.34 5
(AC181074) Strongylocentrotus purpuratus clone R3-3047N01, W... 44 0.36 4
(AC168735) Strongylocentrotus purpuratus clone R3-3010G14, W... 44 0.38 2
(AC168733) Strongylocentrotus purpuratus clone R3-3010H21, W... 44 0.39 3
(AC178477) Strongylocentrotus purpuratus clone R3-3039C22, W... 48 0.43 4
(EF158072) Plasmodium falciparum erythrocyte membrane protei... 48 0.53 1
(FJ770081) Homo sapiens chromosome 7 PCR sequence PCR_NA1895... 48 0.53 1
(AC232312) Homo sapiens FOSMID clone ABC9-45917700B11 from c... 48 0.53 1
(AC149951) Strongylocentrotus purpuratus clone R3-32B19, WOR... 48 0.53 1
(AC149948) Strongylocentrotus purpuratus clone R3-32B20, WOR... 48 0.53 1
(AC141509) Rattus norvegicus clone CH230-40E7, WORKING DRAFT... 48 0.53 1
(AC128884) Rattus norvegicus clone CH230-46P9, *** SEQUENCIN... 48 0.53 1
(AC109431) Rattus norvegicus clone CH230-97F9, *** SEQUENCIN... 48 0.53 1
(AC106312) Rattus norvegicus clone CH230-124E11, WORKING DRA... 48 0.53 1
(AC103555) Rattus norvegicus clone CH230-141I14, WORKING DRA... 48 0.53 1
(AC063954) Homo sapiens chromosome 3 clone RP11-827E14, WORK... 48 0.53 1
(AC214932) Pan troglodytes clone ptb-33h17, WORKING DRAFT SE... 48 0.53 1
(AC184276) Strongylocentrotus purpuratus clone R3-3013D24, W... 48 0.53 1
(AC184222) Strongylocentrotus purpuratus clone R3-40I21, WOR... 48 0.53 1
(AC181162) Strongylocentrotus purpuratus clone R3-16C12, WOR... 48 0.53 1
(AC181131) Strongylocentrotus purpuratus clone R3-16H02, WOR... 48 0.53 1
(AC180843) Strongylocentrotus purpuratus clone R3-3070A3, WO... 48 0.53 1
(AC180556) Strongylocentrotus purpuratus clone R3-3098D2, WO... 48 0.53 1
(AC179304) Strongylocentrotus purpuratus clone R3-1105C6, WO... 48 0.53 1
(AC179299) Strongylocentrotus purpuratus clone R3-1105E3, WO... 48 0.53 1
(AC179008) Strongylocentrotus purpuratus clone R3-1108K24, W... 48 0.53 1
(AC178730) Strongylocentrotus purpuratus clone R3-13D8, WORK... 48 0.53 1
(AC178565) Strongylocentrotus purpuratus clone R3-3025M17, W... 48 0.53 1
(AC178364) Strongylocentrotus purpuratus clone R3-3107B14, W... 48 0.53 1
(AC178105) Strongylocentrotus purpuratus clone R3-3073D12, W... 48 0.53 1
(AC177604) Strongylocentrotus purpuratus clone R3-1023L14, W... 48 0.53 1
(AC177248) Strongylocentrotus purpuratus clone R3-1034D07, W... 48 0.53 1
(AC177153) Strongylocentrotus purpuratus clone R3-4015B14, W... 48 0.53 1
(AC176555) Strongylocentrotus purpuratus clone R3-3076G4, WO... 48 0.53 1
(AC174127) Strongylocentrotus purpuratus clone R3-17M20, WOR... 48 0.53 1
(AC168801) Strongylocentrotus purpuratus clone R3-13H4, WORK... 48 0.53 1
(AC168764) Strongylocentrotus purpuratus clone R3-3004D6, WO... 48 0.53 1
(AC168592) Strongylocentrotus purpuratus clone R3-3065D2, WO... 48 0.53 1
(AC168442) Strongylocentrotus purpuratus clone R3-39D21, WOR... 48 0.53 1
(AC016936) Homo sapiens chromosome 3 clone RP11-89J17, WORKI... 48 0.53 1
(AY816027) Schistosoma japonicum SJCHGC05418 protein mRNA, c... 48 0.53 1
(EH637408) EST8516 LK04 Laupala kohalensis cDNA clone 106102... 48 0.53 1
(CV993499) IpCGFr2_11_G01_23 IpCGFr2 Ictalurus punctatus cDN... 48 0.53 1
(CV696556) SJS_026_14.T7 SJS Schistosoma japonicum cDNA, mRN... 48 0.53 1
(FF468420) G613P6018RH7.T0 Acorn worm blastula/gastrula pCMV... 48 0.53 1
(FD315213) CBFA5530.g1 CBFA: Normalized cDNA library made fr... 48 0.53 1
(FD312518) CBFA45295.g1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD306557) CBFA42025.g1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD306556) CBFA42025.b1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD298881) CBFA37696.g1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD294475) CBFA33385.g1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD290102) CBFA30830.b1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD283848) CBFA26221.g1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD281931) CBFA25073.g1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD278059) CBFA22815.g1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD278058) CBFA22815.b1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD269621) CBFA15908.g1 CBFA: Normalized cDNA library made f... 48 0.53 1
(FD269620) CBFA15908.b1 CBFA: Normalized cDNA library made f... 48 0.53 1
(EY392513) CAXA9849.rev CAXA Helobdella robusta Subtracted L... 48 0.53 1
(EY381462) CAXA3478.rev CAXA Helobdella robusta Subtracted L... 48 0.53 1
(EY359366) CAWZ6391.fwd CAWZ Helobdella robusta Primary Late... 48 0.53 1
(EY349475) CAWZ17071.rev CAWZ Helobdella robusta Primary Lat... 48 0.53 1
(EY338722) CAWY9201.rev CAWY Helobdella robusta Subtracted E... 48 0.53 1
(EY327934) CAWY12962.rev CAWY Helobdella robusta Subtracted ... 48 0.53 1
(EY326878) CAWY11882.rev CAWY Helobdella robusta Subtracted ... 48 0.53 1
(AC180521) Strongylocentrotus purpuratus clone R3-3099C8, WO... 42 0.95 2
(AC157830) Strongylocentrotus purpuratus clone R3-3035A7, WO... 36 1.1 2
(AC129148) Rattus norvegicus clone CH230-248P4, WORKING DRAF... 36 1.1 2
(AC147377) Mus musculus BAC clone RP23-156K23 from chromosom... 32 1.1 2
(AC097407) Rattus norvegicus clone CH230-114H17, WORKING DRA... 36 1.1 2
(AC111358) Rattus norvegicus clone CH230-90P4, WORKING DRAFT... 32 1.1 2
(AC169616) Bos taurus clone CH240-200A13, WORKING DRAFT SEQU... 34 1.1 2
(AC130103) Rattus norvegicus BAC CH230-41L20 (Children's Ho... 36 1.1 2
(AC182987) Bos taurus clone CH240-68N7, WORKING DRAFT SEQUEN... 34 1.1 2
(AC168246) Strongylocentrotus purpuratus clone R3-1001L1, WO... 36 1.1 2
(AC106260) Rattus norvegicus clone CH230-66N17, *** SEQUENCI... 36 1.1 2
(AC120004) Mus musculus chromosome 5, clone RP24-150N15, com... 32 1.1 2
(AC122466) Mus musculus BAC clone RP24-304N8 from chromosome... 32 1.1 2
(AL627104) Mouse DNA sequence from clone RP23-412B2 on chrom... 34 1.1 2
(AC219577) Bos taurus clone CH240-328C6, WORKING DRAFT SEQUE... 36 1.1 2
(AC140145) Homo sapiens chromosome 5 clone RP11-244N5, WORKI... 34 1.1 2
(FB357235) Sequence 94 from Patent WO2006119775. 34 1.1 2
(AC191385) Pan troglodytes chromosome 11 clone CH251-510M10,... 36 1.1 2
(AC016182) Homo sapiens chromosome 17, clone RP11-559N14, co... 34 1.1 2
(AC117698) Mus musculus chromosome 5, clone RP23-451A12, com... 34 1.1 2
(AC025549) Homo sapiens chromosome 1 clone RP11-447M5, WORKI... 34 1.1 2
(AC040922) Homo sapiens chromosome 19 clone RP11-699H21 map ... 34 1.1 2
(AC103898) Bos taurus clone RP42-120P24, WORKING DRAFT SEQUE... 36 1.1 2
(AC044790) Homo sapiens chromosome 11 clone RP11-141J21 cont... 34 1.1 2
(AL355861) Human DNA sequence from clone RP11-567J24 on chro... 32 1.1 2
(CT737283) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.1 2
(AC019280) Homo sapiens clone RP11-14I12, WORKING DRAFT SEQU... 32 1.1 2
(AC024517) Homo sapiens chromosome 1 clone RP11-168B8 map 1,... 34 1.1 2
(AC176896) Strongylocentrotus purpuratus clone R3-31L22, WOR... 36 1.1 2
(AC218735) Bos taurus clone CH240-296A24, WORKING DRAFT SEQU... 36 1.1 2
(AC168645) Strongylocentrotus purpuratus clone R3-3017K16, W... 34 1.1 2
(AC025484) Homo sapiens clone RP11-252P19, WORKING DRAFT SEQ... 34 1.1 2
(AC140113) Homo sapiens PAC clone RP1-85D24 from Y, complete... 32 1.1 2
(CU207386) Mouse DNA sequence from clone DN-202E11 on chromo... 34 1.1 2
(AC177361) Strongylocentrotus purpuratus clone R3-52G01, WOR... 36 1.1 2
(AC176628) Strongylocentrotus purpuratus clone R3-114B21, WO... 36 1.1 2
(AC177573) Strongylocentrotus purpuratus clone R3-1026C3, WO... 36 1.1 2
(AC181888) Strongylocentrotus purpuratus clone R3-1017H17, W... 36 1.1 2
(AC168677) Strongylocentrotus purpuratus clone R3-3015B8, WO... 36 1.1 2
(AC008888) Homo sapiens chromosome 19 clone CTD-2221F12, com... 34 1.1 2
(AL591962) Human DNA sequence from clone RP11-346O16 on chro... 34 1.2 2
(AC176029) Strongylocentrotus purpuratus clone R3-18E7, WORK... 36 1.2 2
(DD422278) GRK5 that relates to Parkinson's Disease, and use... 32 1.2 2
(CU459017) Mouse DNA sequence from clone DN-161J11 on chromo... 34 1.2 2
(EY303520) CAWX16757.rev CAWX Helobdella robusta Primary Ear... 44 1.2 2
(AC131497) Lytechinus variegatus clone Lv37C14, *** SEQUENCI... 34 1.2 2
(AC120009) Mus musculus clone RP24-195D12, LOW-PASS SEQUENCE... 32 1.2 2
(CT978684) Mouse DNA sequence from clone WI1-572B3 on chromo... 34 1.2 2
(AC188626) Homo sapiens chromosome 7 clone WI2-3551O8, *** S... 34 1.2 2
(AC142229) Homo sapiens fosmid clone XXFOS-800764H6 from 7, ... 34 1.2 2
(AL954745) Human DNA sequence from clone CITF22-65C6 on chro... 34 1.2 2
(EY303521) CAWX16757.fwd CAWX Helobdella robusta Primary Ear... 44 1.2 2
(CB971990) CAB10006_IIa_Fa_F05 Cabernet Sauvignon Flower Pre... 36 1.5 2
(CB972059) CAB10006_IIa_ra_F05 Cabernet Sauvignon Flower Pre... 36 1.5 2
(FC840772) CBHN11025.fwd CBHN Metridium senile tentacle Metr... 32 1.5 2
(CR163825) Reverse strand read from insert in 5'HPRT inserti... 34 1.5 2
(AJ277590) Dictyostelium discoideum iplA gene for inositol 1... 44 1.5 2
(BX927349) Zebrafish DNA sequence from clone DKEY-84K15 in l... 46 2.1 1
(BX537337) Zebrafish DNA sequence from clone CH211-222E23 in... 46 2.1 1
(AC166124) Mus musculus chromosome 1, clone RP23-105N9, comp... 46 2.1 1
(AC154641) Mus musculus BAC clone RP23-276C17 from chromosom... 46 2.1 1
(AC133967) Mus musculus BAC clone RP23-14J5 from chromosome ... 46 2.1 1
(AC125583) Rattus norvegicus 4 BAC CH230-1A7 (Children's Hos... 46 2.1 1
(AC100740) Mus musculus chromosome 1, clone RP24-421N21, com... 46 2.1 1
(AC094253) Rattus norvegicus 4 BAC CH230-3E12 (Children's Ho... 46 2.1 1
(AC147961) Medicago truncatula chromosome 7 clone mth2-39i23... 46 2.1 1
(AC136383) Rattus norvegicus clone CH230-53O20, *** SEQUENCI... 46 2.1 1
(AC134125) Rattus norvegicus clone CH230-151D8, WORKING DRAF... 46 2.1 1
(AC131380) Strongylocentrotus purpuratus clone Sp12G10, *** ... 46 2.1 1
(AC129816) Rattus norvegicus clone CH230-22B3, WORKING DRAFT... 46 2.1 1
(AC129793) Rattus norvegicus clone CH230-313F9, *** SEQUENCI... 46 2.1 1
(AC120468) Rattus norvegicus clone CH230-240P22, *** SEQUENC... 46 2.1 1
(AC115419) Rattus norvegicus clone CH230-112P18, WORKING DRA... 46 2.1 1
(AC108885) Rattus norvegicus strain Brown Norway clone RP31-... 46 2.1 1
(AC098408) Rattus norvegicus clone CH230-2C9, *** SEQUENCING... 46 2.1 1
(AC097581) Rattus norvegicus strain Brown Norway clone RP31-... 46 2.1 1
(AC095386) Rattus norvegicus clone CH230-6O15, WORKING DRAFT... 46 2.1 1
(AC095206) Rattus norvegicus clone CH230-9K22, *** SEQUENCIN... 46 2.1 1
(FP236506) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.1 1
(FP102194) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.1 1
(AC225468) Medicago truncatula clone mth2-175c18, WORKING DR... 46 2.1 1
(AC194483) Zea mays chromosome 4 clone CH201-104B9; ZMMBBc01... 46 2.1 1
(AC186499) Zea mays chromosome 4 clone ZMMBBb-243P4; ZMMBBb0... 46 2.1 1
(AC181897) Strongylocentrotus purpuratus clone R3-1016C08, W... 46 2.1 1
(AC180924) Strongylocentrotus purpuratus clone R3-3064B18, W... 46 2.1 1
(AC179699) Strongylocentrotus purpuratus clone R3-1021J21, W... 46 2.1 1
(AC179657) Strongylocentrotus purpuratus clone R3-1024G02, W... 46 2.1 1
(AC179485) Strongylocentrotus purpuratus clone R3-63O22, WOR... 46 2.1 1
(AC178984) Strongylocentrotus purpuratus clone R3-1108M19, W... 46 2.1 1
(AC178846) Strongylocentrotus purpuratus clone R3-26F6, WORK... 46 2.1 1
(AC178547) Strongylocentrotus purpuratus clone R3-3027F07, W... 46 2.1 1
(AC177241) Strongylocentrotus purpuratus clone R3-42F6, WORK... 46 2.1 1
(AC176886) Strongylocentrotus purpuratus clone R3-31I6, WORK... 46 2.1 1
(AC176320) Strongylocentrotus purpuratus clone R3-3054H10, W... 46 2.1 1
(AC169280) Bos taurus clone CH240-229E5, WORKING DRAFT SEQUE... 46 2.1 1
(AY814662) Schistosoma japonicum SJCHGC03175 protein mRNA, c... 46 2.1 1
(AZ152983) SP_0038_A2_D04_T7 Strongylocentrotus purpuratus, ... 46 2.1 1
(BZ217481) CH230-360H5.TV CHORI-230 Segment 2 Rattus norvegi... 46 2.1 1
(DY656754) Cm_mx1_84f11_SP6 Green Shore Crab Multiple Tissue... 46 2.1 1
(CX833016) ACAC-aaa20d08.g1 Hydra EST UCI 7 Hydra magnipapil... 46 2.1 1
(CV671240) RE-3-SJ-B_A03_RE-3-SJ-BA03-T7 Schistosoma japonic... 46 2.1 1
(CU471428) Theobroma cacao, mRNA sequence (KZ0AAC10YI13FM1). 46 2.1 1
(CB781048) AMGNNUC:SRPG2-00001-A7-A srpg2 (10238) Rattus nor... 46 2.1 1
(BI991707) 4104-38 Mouse E14.5 retina lambda ZAP II Library ... 46 2.1 1
(FE818683) CCAG34291.b1 CCAG Petrolisthes cinctipes heart, g... 46 2.1 1
(FE800468) CCAG23241.g1 CCAG Petrolisthes cinctipes heart, g... 46 2.1 1
(FE800467) CCAG23241.b1 CCAG Petrolisthes cinctipes heart, g... 46 2.1 1
(FE239869) CAPG5578.fwd CAPG Naegleria gruberi amoeba stage ... 46 2.1 1
(EY384855) CAXA5379.fwd CAXA Helobdella robusta Subtracted L... 46 2.1 1
(EX975847) CAGO7868.rev CAGO Karenia brevis Karbr Stressed (... 46 2.1 1
(AC181040) Strongylocentrotus purpuratus clone R3-3029B16, W... 44 2.7 2
(CB706639) AMGNNUC:SRPB2-00154-A2-A srpb2 (10220) Rattus nor... 42 2.8 2
(AC116100) Dictyostelium discoideum chromosome 2 map 6163571... 40 3.0 3
(AC177159) Strongylocentrotus purpuratus clone R3-4015E22, W... 40 3.1 2
(AC181472) Strongylocentrotus purpuratus clone R3-1111I16, W... 40 3.1 2
(CQ326793) Sequence 887 from Patent WO0157275. 36 3.2 2
(CQ289825) Sequence 930 from Patent WO0186003. 36 3.2 2
(CQ252679) Sequence 940 from Patent WO0157277. 36 3.2 2
(CQ214093) Sequence 932 from Patent WO0157273. 36 3.2 2
(CQ198631) Sequence 908 from Patent WO0157271. 36 3.2 2
(CQ169493) Sequence 889 from Patent WO0157274. 36 3.2 2
(CQ130886) Sequence 908 from Patent WO0157276. 36 3.2 2
(CQ092071) Sequence 930 from Patent WO0157272. 36 3.2 2
(CQ065117) Sequence 917 from Patent WO0157278. 36 3.2 2
(CQ050076) Sequence 896 from Patent WO0157270. 36 3.2 2
(AC179613) Strongylocentrotus purpuratus clone R3-1028K21, W... 42 3.5 2
(AC176872) Strongylocentrotus purpuratus clone R3-31F17, WOR... 36 3.8 5
(AC184502) Strongylocentrotus purpuratus clone R3-16L7, WORK... 44 3.9 2
(GM697057) Sequence 1 from Patent WO2008086800. 32 3.9 2
(AC106130) Rattus norvegicus clone CH230-56B15, WORKING DRAF... 34 3.9 2
(AL670959) Mouse DNA sequence from clone RP23-94L5 on chromo... 34 3.9 2
(AC098031) Rattus norvegicus clone CH230-97B22, *** SEQUENCI... 34 3.9 2
(AC134361) Rattus norvegicus clone CH230-6H10, WORKING DRAFT... 32 3.9 2
(AC180195) Strongylocentrotus purpuratus clone R3-3M6, WORKI... 32 3.9 2
(AC096320) Rattus norvegicus clone CH230-169E3, WORKING DRAF... 32 3.9 2
(AC114179) Rattus norvegicus clone CH230-191F15, WORKING DRA... 32 3.9 2
(AC123665) Mus musculus chromosome 14, clone RP23-226A4, com... 32 4.0 2
(AL513352) Mouse DNA sequence from clone RP23-180L12 on chro... 32 4.0 2
(AC128102) Rattus norvegicus clone CH230-322A18, WORKING DRA... 32 4.0 2
(GM697058) Sequence 2 from Patent WO2008086800. 32 4.0 2
(AC178662) Strongylocentrotus purpuratus clone R3-3007H19, W... 34 4.0 2
(AC184498) Strongylocentrotus purpuratus clone R3-16D15, WOR... 34 4.0 2
(AC110006) Homo sapiens chromosome 5 clone RP11-329M17, WORK... 32 4.0 2
(AC010536) Homo sapiens chromosome 16 clone RP11-278A23, com... 32 4.0 2
(AC144996) Rattus norvegicus strain Brown Norway clone CH230... 32 4.0 2
(AC108448) Homo sapiens chromosome 11, clone CTD-2544D21, co... 34 4.0 2
(CU076041) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.0 2
(AC092135) Homo sapiens chromosome 16 clone RP11-274A11, com... 32 4.0 2
(AC117130) Rattus norvegicus clone CH230-320O24, WORKING DRA... 32 4.0 2
(AC174519) Strongylocentrotus purpuratus clone R3-16B1, WORK... 34 4.0 2
(AC016765) Homo sapiens chromosome 11 clone RP11-555F1, WORK... 34 4.0 2
(AL390254) Human chromosome 14 DNA sequence BAC R-991C1 of l... 32 4.0 2
(AC019089) Homo sapiens BAC clone RP11-370L14 from 4, comple... 32 4.0 2
(AC208958) Nomascus leucogenys chromosome UNK clone CH271-13... 32 4.0 2
(GN007707) Sequence 148 from Patent EP2014669. 32 4.0 2
(AC092667) Homo sapiens BAC clone RP11-549H5 from 2, complet... 32 4.0 2
(AC092720) Homo sapiens chromosome 16 clone RP11-482M8, comp... 32 4.0 2
(EB087103) EST49535 Larval Stage 1 Aedes aegypti cDNA clone ... 38 4.0 2
(AC179655) Strongylocentrotus purpuratus clone R3-1024G12, W... 32 4.1 2
(AC173366) Strongylocentrotus purpuratus clone R3-3088E22, W... 34 4.1 2
(AC179599) Strongylocentrotus purpuratus clone R3-1029E15, W... 32 4.1 2
(DW995485) EST47866 Larval Stage 1 Aedes aegypti cDNA clone ... 38 4.1 2
(AC099480) Homo sapiens chromosome 16 clone CTB-159O23, comp... 32 4.1 2
(AC179528) Strongylocentrotus purpuratus clone R3-1035B1, WO... 34 4.1 2
(AC099483) Homo sapiens chromosome 16 clone CTC-460I24, WORK... 32 4.1 2
(AF429315) Homo sapiens junctophilin 3 (JPH3) gene, partial ... 32 4.1 2
(EH085685) PMEB280TO Perkinsus marinus large insert cDNA lib... 42 4.1 2
(AL139823) Human DNA sequence from clone RP4-703E10 on chrom... 34 4.1 2
(EG001538) EST74024 Larval Stage 1 Aedes aegypti cDNA clone ... 38 4.1 2
(AC010606) Homo sapiens chromosome 19 clone CTB-25J19, compl... 32 4.2 2
(EB087538) EST49970 Larval Stage 1 Aedes aegypti cDNA clone ... 38 4.2 2
(AL139429) Human DNA sequence from clone RP11-110K14 on chro... 34 4.2 2
(AC207611) Homo sapiens FOSMID clone ABC10-1622570O17 from c... 34 4.4 2
(AC208147) Homo sapiens FOSMID clone ABC9-44003900F15 from c... 34 4.4 2
(BX284618) Human DNA sequence from clone CTD-2338G21 on chro... 34 4.6 2
(EH074319) PMDB174TR Perkinsus marinus small insert cDNA lib... 42 4.7 2
(EY389431) CAXA7847.rev CAXA Helobdella robusta Subtracted L... 34 4.9 2
(EH074316) PMDB174TO Perkinsus marinus small insert cDNA lib... 42 4.9 2
(EY372409) CAXA13996.fwd CAXA Helobdella robusta Subtracted ... 34 5.2 2
(BJ380885) Dictyostelium discoideum cDNA clone:ddc39k16, 3' ... 34 5.4 2
(BJ379911) Dictyostelium discoideum cDNA clone:ddc36l11, 3' ... 34 5.4 2
(AQ322298) RPCI11-99K17.TV RPCI-11 Homo sapiens genomic clon... 32 5.5 2
(EH084621) PMEAW19TO Perkinsus marinus large insert cDNA lib... 42 5.8 2
(EH087583) PMEBF58TO Perkinsus marinus large insert cDNA lib... 42 6.1 2
(EH090271) PMEBX38TO Perkinsus marinus large insert cDNA lib... 42 6.3 2
(AC176110) Strongylocentrotus purpuratus clone R3-24I4, WORK... 38 7.0 2
(AC174554) Strongylocentrotus purpuratus clone R3-1008C22, W... 36 7.5 3
(AC179383) Strongylocentrotus purpuratus clone R3-1101L14, W... 38 8.2 5
(X96869) D.discoideum dokA gene. 44 8.2 2
(AL021531) Fugu rubripes cosmid 151J19 covering the WT1, ret... 44 8.3 1
(EU578926) HIV-1 isolate 1059.08_G2 from USA envelope glycop... 44 8.3 1
(EU578925) HIV-1 isolate 1059.08_G1 from USA envelope glycop... 44 8.3 1
(EU578924) HIV-1 isolate 1059.08_F9 from USA envelope glycop... 44 8.3 1
(EU578923) HIV-1 isolate 1059.08_F6 from USA envelope glycop... 44 8.3 1
(EU578922) HIV-1 isolate 1059.08_F5 from USA envelope glycop... 44 8.3 1
(EU578921) HIV-1 isolate 1059.08_F2 from USA envelope glycop... 44 8.3 1
(EU578920) HIV-1 isolate 1059.08_F1 from USA envelope glycop... 44 8.3 1
(EU578919) HIV-1 isolate 1059.08_E5 from USA envelope glycop... 44 8.3 1
(EU578918) HIV-1 isolate 1059.08_E4 from USA envelope glycop... 44 8.3 1
(EU578917) HIV-1 isolate 1059.08_E3 from USA envelope glycop... 44 8.3 1
(EU578916) HIV-1 isolate 1059.08_E2 from USA envelope glycop... 44 8.3 1
(EU578915) HIV-1 isolate 1059.08_E1 from USA envelope glycop... 44 8.3 1
(EU578914) HIV-1 isolate 1059.08_C8 from USA envelope glycop... 44 8.3 1
(EU578913) HIV-1 isolate 1059.08_C7 from USA env pseudogene,... 44 8.3 1
(EU578912) HIV-1 isolate 1059.08_C5 from USA envelope glycop... 44 8.3 1
(EU578911) HIV-1 isolate 1059.08_C4 from USA envelope glycop... 44 8.3 1
(EU578910) HIV-1 isolate 1059.08_C3 from USA envelope glycop... 44 8.3 1
(EU578909) HIV-1 isolate 1059.08_C2 from USA envelope glycop... 44 8.3 1
(EU578908) HIV-1 isolate 1059.08_C18 from USA envelope glyco... 44 8.3 1
(EU578907) HIV-1 isolate 1059.08_C17 from USA envelope glyco... 44 8.3 1
(EU578906) HIV-1 isolate 1059.08_C16 from USA envelope glyco... 44 8.3 1
(EU578905) HIV-1 isolate 1059.08_C15 from USA envelope glyco... 44 8.3 1
(EU578904) HIV-1 isolate 1059.08_C14 from USA envelope glyco... 44 8.3 1
(EU578903) HIV-1 isolate 1059.08_C13 from USA envelope glyco... 44 8.3 1
(EU578902) HIV-1 isolate 1059.08_C12 from USA envelope glyco... 44 8.3 1
(EU578901) HIV-1 isolate 1059.08_C11 from USA envelope glyco... 44 8.3 1
(EU578900) HIV-1 isolate 1059.08_B9 from USA envelope glycop... 44 8.3 1
(EU578899) HIV-1 isolate 1059.08_B6 from USA envelope glycop... 44 8.3 1
(EU578898) HIV-1 isolate 1059.08_B4 from USA env pseudogene,... 44 8.3 1
(EU578897) HIV-1 isolate 1059.08_B47 from USA envelope glyco... 44 8.3 1
(EU578896) HIV-1 isolate 1059.08_B46 from USA envelope glyco... 44 8.3 1
(EU578895) HIV-1 isolate 1059.08_B45 from USA envelope glyco... 44 8.3 1
(EU578894) HIV-1 isolate 1059.08_B42 from USA envelope glyco... 44 8.3 1
(EU578893) HIV-1 isolate 1059.08_B41 from USA env pseudogene... 44 8.3 1
(EU578892) HIV-1 isolate 1059.08_B3 from USA envelope glycop... 44 8.3 1
(EU578891) HIV-1 isolate 1059.08_B38 from USA envelope glyco... 44 8.3 1
(EU578890) HIV-1 isolate 1059.08_B37 from USA envelope glyco... 44 8.3 1
(EU578889) HIV-1 isolate 1059.08_B35 from USA envelope glyco... 44 8.3 1
(EU578888) HIV-1 isolate 1059.08_B33 from USA envelope glyco... 44 8.3 1
(EU578887) HIV-1 isolate 1059.08_B32 from USA envelope glyco... 44 8.3 1
(EU578886) HIV-1 isolate 1059.08_B30 from USA envelope glyco... 44 8.3 1
(EU578885) HIV-1 isolate 1059.08_B29 from USA envelope glyco... 44 8.3 1
(EU578884) HIV-1 isolate 1059.08_B27 from USA envelope glyco... 44 8.3 1
(EU578883) HIV-1 isolate 1059.08_B25 from USA envelope glyco... 44 8.3 1
(EU578882) HIV-1 isolate 1059.08_B24 from USA envelope glyco... 44 8.3 1
(EU578881) HIV-1 isolate 1059.08_B22 from USA env pseudogene... 44 8.3 1
(EU578880) HIV-1 isolate 1059.08_B19 from USA envelope glyco... 44 8.3 1
(EU578879) HIV-1 isolate 1059.08_B17 from USA envelope glyco... 44 8.3 1
(EU578878) HIV-1 isolate 1059.08_B16 from USA envelope glyco... 44 8.3 1
(EU578877) HIV-1 isolate 1059.08_B12 from USA envelope glyco... 44 8.3 1
(EU578876) HIV-1 isolate 1059.08_B10 from USA envelope glyco... 44 8.3 1
(EU578875) HIV-1 isolate 1059.07_C8 from USA envelope glycop... 44 8.3 1
(EU578874) HIV-1 isolate 1059.07_C7 from USA envelope glycop... 44 8.3 1
(EU578873) HIV-1 isolate 1059.07_C6 from USA envelope glycop... 44 8.3 1
(EU578872) HIV-1 isolate 1059.07_C5 from USA envelope glycop... 44 8.3 1
(EU578871) HIV-1 isolate 1059.07_C4 from USA envelope glycop... 44 8.3 1
(EU578870) HIV-1 isolate 1059.07_C2 from USA envelope glycop... 44 8.3 1
(EU578869) HIV-1 isolate 1059.07_C14 from USA env pseudogene... 44 8.3 1
(EU578868) HIV-1 isolate 1059.07_C12 from USA envelope glyco... 44 8.3 1
(EU578867) HIV-1 isolate 1059.07_C10 from USA envelope glyco... 44 8.3 1
(EU578866) HIV-1 isolate 1059.07_B9 from USA envelope glycop... 44 8.3 1
(EU578865) HIV-1 isolate 1059.07_B6 from USA envelope glycop... 44 8.3 1
(EU578864) HIV-1 isolate 1059.07_B4 from USA envelope glycop... 44 8.3 1
(EU578863) HIV-1 isolate 1059.07_B3 from USA envelope glycop... 44 8.3 1
(EU578862) HIV-1 isolate 1059.07_B37 from USA envelope glyco... 44 8.3 1
(EU578861) HIV-1 isolate 1059.07_B36 from USA envelope glyco... 44 8.3 1
(EU578860) HIV-1 isolate 1059.07_B35 from USA envelope glyco... 44 8.3 1
(EU578859) HIV-1 isolate 1059.07_B34 from USA env pseudogene... 44 8.3 1
(EU578858) HIV-1 isolate 1059.07_B33 from USA envelope glyco... 44 8.3 1
(EU578857) HIV-1 isolate 1059.07_B32 from USA envelope glyco... 44 8.3 1
(EU578856) HIV-1 isolate 1059.07_B31 from USA envelope glyco... 44 8.3 1
(EU578855) HIV-1 isolate 1059.07_B2 from USA envelope glycop... 44 8.3 1
(EU578854) HIV-1 isolate 1059.07_B29 from USA envelope glyco... 44 8.3 1
(EU578853) HIV-1 isolate 1059.07_B27 from USA envelope glyco... 44 8.3 1
(EU578852) HIV-1 isolate 1059.07_B26 from USA envelope glyco... 44 8.3 1
(EU578851) HIV-1 isolate 1059.07_B25 from USA envelope glyco... 44 8.3 1
(EU578850) HIV-1 isolate 1059.07_B24 from USA envelope glyco... 44 8.3 1
(EU578849) HIV-1 isolate 1059.07_B23 from USA env pseudogene... 44 8.3 1
(EU578848) HIV-1 isolate 1059.07_B19 from USA envelope glyco... 44 8.3 1
(EU578847) HIV-1 isolate 1059.07_B18 from USA envelope glyco... 44 8.3 1
(EU578846) HIV-1 isolate 1059.07_B16 from USA envelope glyco... 44 8.3 1
(EU578845) HIV-1 isolate 1059.07_B15 from USA envelope glyco... 44 8.3 1
(EU578844) HIV-1 isolate 1059.07_B12 from USA envelope glyco... 44 8.3 1
(EU578843) HIV-1 isolate 1059.07_B11 from USA envelope glyco... 44 8.3 1
(EU578842) HIV-1 isolate 1059.07_B10 from USA env pseudogene... 44 8.3 1
(EU578841) HIV-1 isolate 1059.07_A8 from USA envelope glycop... 44 8.3 1
(EU578840) HIV-1 isolate 1059.07_A7 from USA envelope glycop... 44 8.3 1
(EU578839) HIV-1 isolate 1059.07_A5 from USA envelope glycop... 44 8.3 1
(EU578838) HIV-1 isolate 1059.07_A3 from USA envelope glycop... 44 8.3 1
(EU578837) HIV-1 isolate 1059.07_A2 from USA envelope glycop... 44 8.3 1
(EU578836) HIV-1 isolate 1059.07_A1 from USA envelope glycop... 44 8.3 1
(EU578835) HIV-1 isolate 1059.07_A16 from USA env pseudogene... 44 8.3 1
(EU578834) HIV-1 isolate 1059.07_A15 from USA envelope glyco... 44 8.3 1
(EU578833) HIV-1 isolate 1059.07_A14 from USA envelope glyco... 44 8.3 1
(EU578832) HIV-1 isolate 1059.07_A13 from USA env pseudogene... 44 8.3 1
(EU578831) HIV-1 isolate 1059.07_A12 from USA envelope glyco... 44 8.3 1
(EU578830) HIV-1 isolate 1059.07_A11 from USA envelope glyco... 44 8.3 1
(EU578829) HIV-1 isolate 1059.07_A10 from USA envelope glyco... 44 8.3 1
(EU575412) HIV-1 isolate 1059.09_C9 from USA envelope glycop... 44 8.3 1
(EU575411) HIV-1 isolate 1059.09_C8 from USA envelope glycop... 44 8.3 1
(EU575410) HIV-1 isolate 1059.09_C6 from USA envelope glycop... 44 8.3 1
(EU575409) HIV-1 isolate 1059.09_C5 from USA envelope glycop... 44 8.3 1
(EU575408) HIV-1 isolate 1059.09_C4 from USA envelope glycop... 44 8.3 1
(EU575407) HIV-1 isolate 1059.09_C3 from USA envelope glycop... 44 8.3 1
(EU575406) HIV-1 isolate 1059.09_C2 from USA envelope glycop... 44 8.3 1
(EU575405) HIV-1 isolate 1059.09_C25 from USA envelope glyco... 44 8.3 1
(EU575404) HIV-1 isolate 1059.09_C23 from USA envelope glyco... 44 8.3 1
(EU575403) HIV-1 isolate 1059.09_C21 from USA envelope glyco... 44 8.3 1
(EU575402) HIV-1 isolate 1059.09_C1 from USA envelope glycop... 44 8.3 1
(EU575401) HIV-1 isolate 1059.09_C19 from USA env pseudogene... 44 8.3 1
(EU575400) HIV-1 isolate 1059.09_C18 from USA envelope glyco... 44 8.3 1
(EU575399) HIV-1 isolate 1059.09_C17 from USA envelope glyco... 44 8.3 1
(EU575398) HIV-1 isolate 1059.09_C16 from USA envelope glyco... 44 8.3 1
(EU575397) HIV-1 isolate 1059.09_C15 from USA env pseudogene... 44 8.3 1
(EU575396) HIV-1 isolate 1059.09_C14 from USA env pseudogene... 44 8.3 1
(EU575395) HIV-1 isolate 1059.09_C13 from USA envelope glyco... 44 8.3 1
(EU575394) HIV-1 isolate 1059.09_C12 from USA envelope glyco... 44 8.3 1
(EU575393) HIV-1 isolate 1059.09_C11 from USA envelope glyco... 44 8.3 1
(EU575392) HIV-1 isolate 1059.09_C10 from USA envelope glyco... 44 8.3 1
(EU575391) HIV-1 isolate 1059.09_B26 from USA envelope glyco... 44 8.3 1
(EU575390) HIV-1 isolate 1059.09_B25 from USA envelope glyco... 44 8.3 1
(EU575389) HIV-1 isolate 1059.09_B24 from USA envelope glyco... 44 8.3 1
(EU575388) HIV-1 isolate 1059.09_B23 from USA envelope glyco... 44 8.3 1
(EU575387) HIV-1 isolate 1059.09_B22 from USA envelope glyco... 44 8.3 1
(EU575386) HIV-1 isolate 1059.09_B21 from USA envelope glyco... 44 8.3 1
(EU575385) HIV-1 isolate 1059.09_B20 from USA envelope glyco... 44 8.3 1
(EU575384) HIV-1 isolate 1059.09_B19 from USA envelope glyco... 44 8.3 1
(EU575383) HIV-1 isolate 1059.09_B18 from USA env pseudogene... 44 8.3 1
(EU575382) HIV-1 isolate 1059.09_B17 from USA env pseudogene... 44 8.3 1
(EU575381) HIV-1 isolate 1059.09_B15 from USA envelope glyco... 44 8.3 1
(EU575380) HIV-1 isolate 1059.09_A8 from USA envelope glycop... 44 8.3 1
(EU575379) HIV-1 isolate 1059.09_A7 from USA envelope glycop... 44 8.3 1
(EU575378) HIV-1 isolate 1059.09_A6 from USA envelope glycop... 44 8.3 1
(EU575377) HIV-1 isolate 1059.09_A5 from USA envelope glycop... 44 8.3 1
(EU575376) HIV-1 isolate 1059.09_A4 from USA envelope glycop... 44 8.3 1
(EU575375) HIV-1 isolate 1059.09_A2 from USA envelope glycop... 44 8.3 1
(EU575374) HIV-1 isolate 1059.09_A1 from USA envelope glycop... 44 8.3 1
(EU289188) HIV-1 clone 1059_09.A4.1460 from USA tat protein ... 44 8.3 1
(EF593186) HIV-1 isolate 105909_SGA_C8 from USA envelope gly... 44 8.3 1
(DQ517337) Trichoplusia ni ascovirus 2c, complete genome. 44 8.3 1
(BV668112) S217P60273FF10.T0 Noemie Pan troglodytes troglody... 44 8.3 1
(BV622860) S217P6472FA9.T0 Noemie Pan troglodytes troglodyte... 44 8.3 1
(BV441480) S237P6382RH8.T0 PortugueseWaterDog Canis familiar... 44 8.3 1
(BV323820) S236P6288FB10.T0 AlaskanMalamute Canis familiaris... 44 8.3 1
(AB137947) Homo sapiens DNA, STS on chromosome 10, D10S1116i... 44 8.3 1
(CT025573) Mouse DNA sequence from clone RP24-274P18 on chro... 44 8.3 1
(CT025565) Mouse DNA sequence from clone RP24-126K5 on chrom... 44 8.3 1
(CT009637) Mouse DNA sequence from clone RP23-131G16 on chro... 44 8.3 1
(AL773518) Mouse DNA sequence from clone RP24-231F12 on chro... 44 8.3 1
(AC161433) Mus musculus chromosome 8, clone RP23-50F12, comp... 44 8.3 1
(AC154337) Mus musculus BAC clone RP23-254P20 from chromosom... 44 8.3 1
(AC153511) Mus musculus 10 BAC RP23-102N12 (Roswell Park Can... 44 8.3 1
(AC151413) Mus musculus BAC clone RP23-103N6 from 19, comple... 44 8.3 1
(AC139848) Mus musculus BAC clone RP23-358O17 from 8, comple... 44 8.3 1
(AC136019) Mus musculus BAC clone RP24-404D22 from chromosom... 44 8.3 1
(AC133176) Mus musculus BAC clone RP24-111D1 from chromosome... 44 8.3 1
(AC122941) Mus musculus BAC clone RP23-1E3 from chromosome 8... 44 8.3 1
(AC122893) Mus musculus BAC clone RP23-67C3 from chromosome ... 44 8.3 1
(AC120785) Mus musculus chromosome 8, clone RP23-336P3, comp... 44 8.3 1
(AC113941) Mus musculus chromosome 8, clone RP23-161H3, comp... 44 8.3 1
(AC104323) Mus musculus strain C57BL/6J chromosome 17 clone ... 44 8.3 1
(AC098390) Rattus norvegicus 1 BAC CH230-1M24 (Children's Ho... 44 8.3 1
(AC091514) Rattus norvegicus strain Brown Norway clone RP31-... 44 8.3 1
(AC073761) Mus musculus chromosome 17 clone RP23-33K21, comp... 44 8.3 1
(AC220948) Pan troglodytes BAC clone CH251-282G24 from chrom... 44 8.3 1
(AC198614) Pan troglodytes BAC clone CH251-716N8 from chromo... 44 8.3 1
(AC187378) Pan troglodytes BAC clone CH251-352P1 from chromo... 44 8.3 1
(AC184709) Pan troglodytes BAC clone CH251-631F3 from chromo... 44 8.3 1
(AB049903) Macaca fascicularis brain cDNA, clone:QnpA-19839. 44 8.3 1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 44 8.3 1
(AL161581) Arabidopsis thaliana DNA chromosome 4, contig fra... 44 8.3 1
(AL022537) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 44 8.3 1
(AK227475) Arabidopsis thaliana mRNA for hypothetical protei... 44 8.3 1

>(AU037277) Dictyostelium discoideum slug cDNA, clone SSB704.
Length = 560

Score = 535 bits (270), Expect = e-148
Identities = 270/270 (100%)
Strand = Plus / Plus


Query: 322 ttgataataatacaaatagtagtattagtagtggtaatggtgatgatacttcatcttcat 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 ttgataataatacaaatagtagtattagtagtggtaatggtgatgatacttcatcttcat 125


Query: 382 ctagcgatgatgaagatgatgatagtggtgatggttcaaattctggttcatcctcatcat 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ctagcgatgatgaagatgatgatagtggtgatggttcaaattctggttcatcctcatcat 185


Query: 442 cgtcagcaacaaaatcaaatcttccattagctgatatatctcaattctctggatgcagat 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 cgtcagcaacaaaatcaaatcttccattagctgatatatctcaattctctggatgcagat 245


Query: 502 atgattatgcaatgagacctaaatttcatatcactgaatttggtccatggttgttaactg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atgattatgcaatgagacctaaatttcatatcactgaatttggtccatggttgttaactg 305


Query: 562 ctcattcaagttatttcctttcaaaagaag 591
||||||||||||||||||||||||||||||
Sbjct: 306 ctcattcaagttatttcctttcaaaagaag 335

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 367,133,841
Number of extensions: 23306882
Number of successful extensions: 2273320
Number of sequences better than 10.0: 900
Length of query: 816
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 792
Effective length of database: 99,340,224,878
Effective search space: 78677458103376
Effective search space used: 78677458103376
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U01465-1 (Contig-U01465-1Q) /CSM_Contig/Contig-U01465-1Q.Seq.d
(816 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'... 33 8.5

>(Q25802) RecName: Full=DNA-directed RNA polymerase subunit beta'';
EC=2.7.7.6; AltName: Full=PEP; AltName:
Full=Plastid-encoded RNA polymerase subunit beta'';
Short=RNA polymerase subunit beta'';
&S72284(S72284) &X95275_6(X95275|pid:none)
Length = 960

Score = 33.5 bits (75), Expect = 8.5
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2

Query: 548 MVVNCSFKLFPFKRSFKFYWFKFKLNLIIQVVITS-NNNNNAIKKQICFKSNIYLY 712
+++N + L+ ++ Y +K+ +N+ + + NNNN I I +K+N Y+Y
Sbjct: 608 LLLNNKYNLYIIYNNYIKYLYKYNININLYFIKNLFYNNNNFIHNHIIYKNNYYIY 663

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 429,715,962
Number of extensions: 4931293
Number of successful extensions: 13324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13284
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 146
Effective length of database: 643,374,430
Effective search space: 93932666780
Effective search space used: 93932666780
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.73 gvh: 0.47 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
12.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for Contig-U01465-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0