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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U07064-1
Contig ID Contig-U07064-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U07064-1 (Contig-U07064-1Q) /CSM_Contig/Contig-U07064-1Q.Seq.d
ATGTTTAACAAACCAGCTGCAGAAACAGTACCTNCAAAAGTCGTACCAAA
TTTTAAAATTGTAAAAAATCTGCAGCAACACCAACATCTACCACACCACC
AACATTTACATCTACATCAGCAGAAGGAGCAAATAAACCTCAAGAAACAC
CACAAACTTCAGCATCATCATCATCAGCATCATCAACTCCATCTACATCA
CCAGTAATTACAAGTACATCAGCACCAAAACCATCAACTTTTAAAATTTC
ACCAACTTTAAAACCAATTGGATCATCTACACCCACAACAAGTACAACTC
CTCCTCCTTCAGGATTACAACAAGCATCAATTTCACAACCAACTACACCA
GGATTAAAACCAGCCAACAGAGTTTTTGTTAAACCAGCAGGATCTACATC
TGCTCCAACAACTCCATCATTTAAAGGTGCAGCACCAATTAGAAAATCTC
CATCATCAAATGAAAATTTAGCAGAGATCGCAGCAACAACTACAACATCT
GCTAATGTTGCTACAACTACAACAACAACACCAACTACATCTACAACACC
AATTCGAAAGTCACCATCAACCAATGAAAATTTATCAACACCATCACCAA
CAAGCCCAACTACAATATCACCAACTAATCCACAACTTTTAGTTTATGTA
TTACCACCAATTGCATCAAAAGATGAACAACAATCAGAAGCTTCTGTAAC
TTCAACAATAAGACCAAAATCAATTGCAATCAATAATAATAATAATA
Gap no gap
Contig length 747
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4786942
End point 4786194
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U07064
List of clone(s) 

est1=VSK194E,1,748
Translated Amino Acid sequence 
v*qtscrnstxksrtkf*NCKKSAATPTSTTPPTFTSTSAEGANKPQETPQTSASSSSAS
STPSTSPVITSTSAPKPSTFKISPTLKPIGSSTPTTSTTPPPSGLQQASISQPTTPGLKP
ANRVFVKPAGSTSAPTTPSFKGAAPIRKSPSSNENLAEIAATTTTSANVATTTTTTPTTS
TTPIRKSPSTNENLSTPSPTSPTTISPTNPQLLVYVLPPIASKDEQQSEASVTSTIRPKS
IAINNNNN
Translated Amino Acid sequence (All Frames) 
Frame A:
mfnkpaaetvpxkvvpnfkivknlqqhqhlphhqhlhlhqqkeqinlkkhhklqhhhhqh
hqlhlhhq*lqvhqhqnhqllkfhql*nqldhlhpqqvqllllqdynkhqfhnqlhqd*n
qptefllnqqdlhllqqlhhlkvqhqlenlhhqmki*qrsqqqlqhllmllqlqqqhqlh
lqhqfeshhqpmkiyqhhhqqaqlqyhqlihnf*fmyyhqlhqkmnnnqkll*lqq*dqn
qlqsiiiii


Frame B:
cltnqlqkqylqksyqilkl*kicsntniyhttniyiyisrrsk*tsrnttnfsiiiisi
insiyitsnykyistktinf*nftnfktnwiiythnkynsssfrittsinfttnytrikt
sqqsfc*tsriyicsnnsii*rcstn*kisiik*kfsrdrsnnynic*ccynynnntnyi
yntnskvtinq*kfintitnkpnynitn*sttfslcittncikr*ttirsfcnfnnktki
ncnq****


Frame C:
v*qtscrnstxksrtkf*NCKKSAATPTSTTPPTFTSTSAEGANKPQETPQTSASSSSAS
STPSTSPVITSTSAPKPSTFKISPTLKPIGSSTPTTSTTPPPSGLQQASISQPTTPGLKP
ANRVFVKPAGSTSAPTTPSFKGAAPIRKSPSSNENLAEIAATTTTSANVATTTTTTPTTS
TTPIRKSPSTNENLSTPSPTSPTTISPTNPQLLVYVLPPIASKDEQQSEASVTSTIRPKS
IAINNNNN
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U07064-1 (Contig-U07064-1Q)
/CSM_Contig/Contig-U07064-1Q.Seq.d
         (747 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U07064-1 (Contig-U07064-1Q) /CSM_Contig/Conti...  1114  0.0
Contig-U06941-1 (Contig-U06941-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U13325-1 (Contig-U13325-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U11835-1 (Contig-U11835-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U11615-1 (Contig-U11615-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U11196-1 (Contig-U11196-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U02849-1 (Contig-U02849-1Q) /CSM_Contig/Conti...    46  5e-05
Contig-U14551-1 (Contig-U14551-1Q) /CSM_Contig/Conti...    32  0.82
Contig-U12605-1 (Contig-U12605-1Q) /CSM_Contig/Conti...    32  0.82
Contig-U12303-1 (Contig-U12303-1Q) /CSM_Contig/Conti...    32  0.82

>Contig-U07064-1 (Contig-U07064-1Q) /CSM_Contig/Contig-U07064-1Q.Seq.d
          Length = 747

 Score = 1114 bits (562), Expect = 0.0
 Identities = 562/562 (100%)
 Strand = Plus / Plus

                                                                       
Query: 186 actccatctacatcaccagtaattacaagtacatcagcaccaaaaccatcaacttttaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 actccatctacatcaccagtaattacaagtacatcagcaccaaaaccatcaacttttaaa 245

                                                                       
Query: 246 atttcaccaactttaaaaccaattggatcatctacacccacaacaagtacaactcctcct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atttcaccaactttaaaaccaattggatcatctacacccacaacaagtacaactcctcct 305

                                                                       
Query: 306 ccttcaggattacaacaagcatcaatttcacaaccaactacaccaggattaaaaccagcc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccttcaggattacaacaagcatcaatttcacaaccaactacaccaggattaaaaccagcc 365

                                                                       
Query: 366 aacagagtttttgttaaaccagcaggatctacatctgctccaacaactccatcatttaaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aacagagtttttgttaaaccagcaggatctacatctgctccaacaactccatcatttaaa 425

                                                                       
Query: 426 ggtgcagcaccaattagaaaatctccatcatcaaatgaaaatttagcagagatcgcagca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ggtgcagcaccaattagaaaatctccatcatcaaatgaaaatttagcagagatcgcagca 485

                                                                       
Query: 486 acaactacaacatctgctaatgttgctacaactacaacaacaacaccaactacatctaca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 acaactacaacatctgctaatgttgctacaactacaacaacaacaccaactacatctaca 545

                                                                       
Query: 546 acaccaattcgaaagtcaccatcaaccaatgaaaatttatcaacaccatcaccaacaagc 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 acaccaattcgaaagtcaccatcaaccaatgaaaatttatcaacaccatcaccaacaagc 605

                                                                       
Query: 606 ccaactacaatatcaccaactaatccacaacttttagtttatgtattaccaccaattgca 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccaactacaatatcaccaactaatccacaacttttagtttatgtattaccaccaattgca 665

                                                                       
Query: 666 tcaaaagatgaacaacaatcagaagcttctgtaacttcaacaataagaccaaaatcaatt 725
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tcaaaagatgaacaacaatcagaagcttctgtaacttcaacaataagaccaaaatcaatt 725

                                 
Query: 726 gcaatcaataataataataata 747
           ||||||||||||||||||||||
Sbjct: 726 gcaatcaataataataataata 747


 Score =  307 bits (155), Expect = 9e-84
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtttaacaaaccagctgcagaaacagtacctncaaaagtcgtaccaaattttaaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgtttaacaaaccagctgcagaaacagtacctncaaaagtcgtaccaaattttaaaatt 60

                                                                       
Query: 61  gtaaaaaatctgcagcaacaccaacatctaccacaccaccaacatttacatctacatcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtaaaaaatctgcagcaacaccaacatctaccacaccaccaacatttacatctacatcag 120

                                                 
Query: 121 cagaaggagcaaataaacctcaagaaacaccacaaact 158
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagaaggagcaaataaacctcaagaaacaccacaaact 158


>Contig-U06941-1 (Contig-U06941-1Q) /CSM_Contig/Contig-U06941-1Q.Seq.d
          Length = 894

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 513 acaactacaacaacaacaccaactacatctacaaca 548
           |||||||||||||||||| |||| ||| ||||||||
Sbjct: 221 acaactacaacaacaacagcaacaacaactacaaca 256


 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 511 ctacaactacaacaacaac 529
           |||||||||||||||||||
Sbjct: 142 ctacaactacaacaacaac 160


 Score = 32.2 bits (16), Expect = 0.82
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 732 aataataataataata 747
           ||||||||||||||||
Sbjct: 348 aataataataataata 363


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 732 aataataataataat 746
           |||||||||||||||
Sbjct: 781 aataataataataat 795


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 732 aataataataataat 746
           |||||||||||||||
Sbjct: 351 aataataataataat 365


>Contig-U13325-1 (Contig-U13325-1Q) /CSM_Contig/Contig-U13325-1Q.Seq.d
          Length = 728

 Score = 46.1 bits (23), Expect = 5e-05
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 513 acaactacaacaacaacaccaactacatctacaac 547
           ||||| |||||||||||| |||||||| |||||||
Sbjct: 568 acaacaacaacaacaacaacaactacaactacaac 602


 Score = 32.2 bits (16), Expect = 0.82
 Identities = 28/32 (87%)
 Strand = Plus / Plus

                                           
Query: 513 acaactacaacaacaacaccaactacatctac 544
           ||||| |||||||||||  |||||||| ||||
Sbjct: 574 acaacaacaacaacaactacaactacaactac 605


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,365
Number of Sequences: 6905
Number of extensions: 36365
Number of successful extensions: 16992
Number of sequences better than 10.0: 1920
length of query: 747
length of database: 5,674,871
effective HSP length: 16
effective length of query: 731
effective length of database: 5,564,391
effective search space: 4067569821
effective search space used: 4067569821
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U07064-1 (Contig-U07064-1Q) /CSM_Contig/Contig-U07064-1Q.Seq.d
         (747 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270789) Dictyostelium discoideum vegetative cDNA clone:VS...   591   0.0    3
(AU270788) Dictyostelium discoideum vegetative cDNA clone:VS...   301   e-138  2
(BX649380) Zebrafish DNA sequence from clone CH211-87P6 in l...    40   4e-04  2
(BJ421656) Dictyostelium discoideum cDNA clone:ddv43l09, 5' ...    32   0.011  4
(BJ330415) Dictyostelium discoideum cDNA clone:dda31a16, 5' ...    32   0.013  4
(BJ393996) Dictyostelium discoideum cDNA clone:dds33m07, 5' ...    32   0.013  4
(BJ421801) Dictyostelium discoideum cDNA clone:ddv43j23, 5' ...    32   0.013  4
(BJ396077) Dictyostelium discoideum cDNA clone:dds41d12, 5' ...    32   0.014  4
(BJ336965) Dictyostelium discoideum cDNA clone:dda55e21, 5' ...    32   0.014  4
(BJ426997) Dictyostelium discoideum cDNA clone:ddv60o20, 5' ...    32   0.014  4
(BJ424507) Dictyostelium discoideum cDNA clone:ddv52m13, 5' ...    32   0.014  4
(BJ396207) Dictyostelium discoideum cDNA clone:dds41d20, 5' ...    32   0.014  4
(BJ394243) Dictyostelium discoideum cDNA clone:dds34j09, 5' ...    32   0.014  4
(BJ371326) Dictyostelium discoideum cDNA clone:ddc57e16, 5' ...    32   0.014  4
(BJ364239) Dictyostelium discoideum cDNA clone:ddc31b03, 5' ...    32   0.014  4
(BJ339533) Dictyostelium discoideum cDNA clone:dda65n17, 5' ...    32   0.014  4
(BJ338097) Dictyostelium discoideum cDNA clone:dda60g03, 5' ...    32   0.014  4
(BJ391724) Dictyostelium discoideum cDNA clone:dds24o24, 5' ...    32   0.015  4
(BJ392482) Dictyostelium discoideum cDNA clone:dds27f23, 5' ...    32   0.015  4
(AC214018) Macaca mulatta  BAC CH250-311M7 (Children's Hospi...    42   0.029  4
(AY484462) Dictyostelium discoideum kinesin family member 8 ...    42   0.035  3
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    34   0.064  5
(CV500082) 64505.1 Mixed Leaf Solanum tuberosum cDNA clone 6...    38   0.071  2
(CK246970) EST730607 potato callus cDNA library, normalized ...    38   0.10   2
(BX248122) Zebrafish DNA sequence from clone CH211-214C20 in...    40   0.15   6
(DX983727) CHORI103-1A7.TJ CHORI103 Schistosoma mansoni geno...    44   0.20   2
(CK131131) GH03216.3prime GH Drosophila melanogaster head pO...    42   0.25   2
(ER476403) 1093015239942 Global-Ocean-Sampling_GS-35-01-01-1...    44   0.32   2
(AF362373) Dictyostelium discoideum histidine kinase DhkL (d...    34   0.32   4
(L04352) Simian immunodeficiency virus (V1-52) proviral DNA ...    36   0.37   2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    38   0.46   3
(AY225224) Cloning vector pPLEX-5033, complete sequence.           48   0.48   1
(AY225223) Cloning vector pPLEX-5031, complete sequence.           48   0.48   1
(AY225222) Cloning vector pPLEX-5023, complete sequence.           48   0.48   1
(AY225221) Cloning vector pPLEX-5021, complete sequence.           48   0.48   1
(AY225220) Cloning vector pPLEX-5013, complete sequence.           48   0.48   1
(AY225219) Cloning vector pPLEX-5011, complete sequence.           48   0.48   1
(AY225218) Cloning vector pPLEX-5003, complete sequence.           48   0.48   1
(AY225217) Cloning vector pPLEX-5001, complete sequence.           48   0.48   1
(AY181091) Synthetic construct S7S7 promoter-Me1 terminator ...    48   0.48   1
(AY181090) Synthetic construct S7 promoter-Me1 terminator ca...    48   0.48   1
(AY181089) Synthetic construct S4S4 promoter-Me1 terminator ...    48   0.48   1
(AY181088) Synthetic construct S4 promoter-Me1 terminator ca...    48   0.48   1
(AY159034) Cloning vector pPLEX-4004, complete sequence.           48   0.48   1
(AY159033) Cloning vector pPLEX-4003, complete sequence.           48   0.48   1
(AY159032) Cloning vector pPLEX-4002, complete sequence.           48   0.48   1
(AY159031) Cloning vector pPLEX-4001, complete sequence.           48   0.48   1
(AY159025) Cloning vector pPLEX-3004, complete sequence.           48   0.48   1
(AY159024) Cloning vector pPLEX-3003, complete sequence.           48   0.48   1
(AY159023) Cloning vector pPLEX-3002, complete sequence.           48   0.48   1
(AY159022) Cloning vector pPLEX-3001, complete sequence.           48   0.48   1
(AF288899) Flaveria bidentis C4 chloroplastic NADP-malic enz...    48   0.48   1
(AR145400) Sequence 8 from patent US 6211431.                      48   0.48   1
(AC179764) Strongylocentrotus purpuratus clone R3-1016M21, W...    48   0.48   1
(AM445562) Vitis vinifera contig VV78X065691.10, whole genom...    44   0.49   2
(AB102779) Dictyostelium discoideum kin2 mRNA for kinesin-re...    34   0.53   3
(AC113252) Rattus norvegicus clone CH230-323K10, *** SEQUENC...    40   0.53   5
(BX294117) Zebrafish DNA sequence from clone CH211-270F13 in...    40   0.58   2
(CR847533) Zebrafish DNA sequence from clone DKEY-15G24 in l...    40   0.65   6
(BJ392814) Dictyostelium discoideum cDNA clone:dds29e02, 5' ...    32   0.83   3
(AC139762) Mus musculus chromosome UNK clone RP23-194A21, WO...    44   0.93   2
(EX854977) CBNF11101.fwd CBNF Phycomyces blakesleeanus NRRL1...    36   0.95   2
(ET680806) CHO_OF344xj15f1.ab1 CHO_OF Nicotiana tabacum geno...    38   0.99   2
(EX821441) CBNA7583.rev CBNA Phycomyces blakesleeanus NRRL15...    36   1.0    2
(CR749748) Zebrafish DNA sequence from clone DKEY-246E1 in l...    44   1.1    2
(BJ364124) Dictyostelium discoideum cDNA clone:ddc30g04, 5' ...    34   1.1    2
(EX854976) CBNF11101.rev CBNF Phycomyces blakesleeanus NRRL1...    36   1.1    2
(FE243430) CAPG7640.fwd CAPG Naegleria gruberi amoeba stage ...    36   1.2    2
(EX859278) CBNF4909.fwd CBNF Phycomyces blakesleeanus NRRL15...    36   1.2    2
(DV612520) EST1215516 Glossina morsitans morsitans Fat body ...    32   1.2    3
(ET908807) CHO_OF345xj15r1.ab1 CHO_OF Nicotiana tabacum geno...    38   1.3    2
(AY113339) Drosophila melanogaster GH03216 full insert cDNA.       42   1.3    2
(DY889025) CeleSEQ6508 Cunninghamella elegans pBluescript (E...    38   1.3    2
(BH126655) BARC-Satt483 Size-selected soybean genomic Glycin...    36   1.4    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   1.6    3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    38   1.6    3
(AM482717) Vitis vinifera contig VV78X167953.7, whole genome...    46   1.7    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    42   1.8    2
(BX005348) Zebrafish DNA sequence from clone DKEY-245J21 in ...    34   1.8    5
(CR854881) Zebrafish DNA sequence from clone CH211-198O8 in ...    46   1.9    1
(AC147995) Mus musculus BAC clone RP24-294O4 from 8, complet...    46   1.9    1
(AC130537) Mus musculus BAC clone RP23-412D3 from 8, complet...    46   1.9    1
(AM429742) Vitis vinifera contig VV78X029072.3, whole genome...    46   1.9    1
(AF411804) Solanum lycopersicum chromosome 9 BAC clone C09HB...    46   1.9    1
(AC153096) Ornithorhynchus anatinus clone OA_Bb-96B20, WORKI...    46   1.9    1
(AC204468) Ornithorhynchus anatinus clone OA_Bb-77C24, WORKI...    46   1.9    1
(ER467371) 1092963930472 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.9    1
(DU630786) OO__Ba0139A01.r OO__Ba Oryza officinalis genomic ...    46   1.9    1
(DU586657) OO__Ba0078M18.f OO__Ba Oryza officinalis genomic ...    46   1.9    1
(DU556539) OO__Ba0036N07.r OO__Ba Oryza officinalis genomic ...    46   1.9    1
(CU803089) A BAC library has been constructed from PN40024 g...    46   1.9    1
(CU296665) Equus caballus GSS, BAC clone CH241-463E4, SP6 en...    46   1.9    1
(DB949995) Manihot esculenta mRNA, clone: CAS01_035_M23, 3'end.    46   1.9    1
(BW310818) Ciona intestinalis cDNA, clone:ciht008m10, 5' end...    46   1.9    1
(DH197898) Oryzias latipes Fosmid clone:GOLWFno486_o19, reve...    34   1.9    2
(BJ429541) Dictyostelium discoideum cDNA clone:ddv3k20, 3' e...    32   1.9    3
(CQ578607) Sequence 6365 from Patent WO0171042.                    42   2.0    2
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          36   2.3    9
(AL929292) Zebrafish DNA sequence from clone DKEY-11L24 in l...    34   2.3    7
(AY232269) Dictyostelium discoideum putative protein Roco7 (...    34   2.7    4

>(AU270789) Dictyostelium discoideum vegetative cDNA clone:VSK194,
           3' end single read.
          Length = 637

 Score =  591 bits (298), Expect(3) = 0.0
 Identities = 298/298 (100%)
 Strand = Plus / Plus


Query: 186 actccatctacatcaccagtaattacaagtacatcagcaccaaaaccatcaacttttaaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  actccatctacatcaccagtaattacaagtacatcagcaccaaaaccatcaacttttaaa 134


Query: 246 atttcaccaactttaaaaccaattggatcatctacacccacaacaagtacaactcctcct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 atttcaccaactttaaaaccaattggatcatctacacccacaacaagtacaactcctcct 194


Query: 306 ccttcaggattacaacaagcatcaatttcacaaccaactacaccaggattaaaaccagcc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ccttcaggattacaacaagcatcaatttcacaaccaactacaccaggattaaaaccagcc 254


Query: 366 aacagagtttttgttaaaccagcaggatctacatctgctccaacaactccatcatttaaa 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aacagagtttttgttaaaccagcaggatctacatctgctccaacaactccatcatttaaa 314


Query: 426 ggtgcagcaccaattagaaaatctccatcatcaaatgaaaatttagcagagatcgcag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggtgcagcaccaattagaaaatctccatcatcaaatgaaaatttagcagagatcgcag 372

 Score =  387 bits (195), Expect(3) = 0.0
 Identities = 195/195 (100%)
 Strand = Plus / Plus


Query: 553 ttcgaaagtcaccatcaaccaatgaaaatttatcaacaccatcaccaacaagcccaacta 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttcgaaagtcaccatcaaccaatgaaaatttatcaacaccatcaccaacaagcccaacta 501


Query: 613 caatatcaccaactaatccacaacttttagtttatgtattaccaccaattgcatcaaaag 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caatatcaccaactaatccacaacttttagtttatgtattaccaccaattgcatcaaaag 561


Query: 673 atgaacaacaatcagaagcttctgtaacttcaacaataagaccaaaatcaattgcaatca 732
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgaacaacaatcagaagcttctgtaacttcaacaataagaccaaaatcaattgcaatca 621


Query: 733 ataataataataata 747
           |||||||||||||||
Sbjct: 622 ataataataataata 636

 Score = 93.7 bits (47), Expect(3) = 0.0
 Identities = 47/47 (100%)
 Strand = Plus / Plus


Query: 112 ctacatcagcagaaggagcaaataaacctcaagaaacaccacaaact 158
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctacatcagcagaaggagcaaataaacctcaagaaacaccacaaact 47

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 853,656,732
Number of extensions: 63653634
Number of successful extensions: 8548813
Number of sequences better than 10.0: 228
Length of query: 747
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 723
Effective length of database: 97,308,875,965
Effective search space: 70354317322695
Effective search space used: 70354317322695
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U07064-1 (Contig-U07064-1Q) /CSM_Contig/Contig-U07064-1Q.Seq.d
         (747 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 612,000,922
Number of extensions: 8774620
Number of successful extensions: 27640
Number of sequences better than 10.0: 0
Number of HSP's gapped: 27216
Number of HSP's successfully gapped: 0
Length of query: 249
Length of database: 1,040,966,779
Length adjustment: 125
Effective length of query: 124
Effective length of database: 640,431,154
Effective search space: 79413463096
Effective search space used: 79413463096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.86  gvh: 0.42  alm: 0.47  top: 0.27  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U07064-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0