Contig-U07060-1
Contig ID Contig-U07060-1
Contig update 2001. 8.30
Contig sequence
>Contig-U07060-1 (Contig-U07060-1Q) /CSM_Contig/Contig-U07060-1Q.Seq.d
TTGTTAATTGGGCATATCGTGGTAAAGATGGTACAAATCCTTGGGCCACT
GAAAAAGATTTAGTAACTGGATTTAGAGTTACACCAGAAATGTTACATTC
AGATTTAAATACAGACAATAAATTAATGAAATTAATGTTAATTGAACATA
TAATTGAAGATAATATTGATGGTGCATCAGAAGCATCAGAAGCTACAACC
ACCACTACAAATACTGTATCAGCAGATCAAAAAAGATTAATTATTGGATG
CGTTAAAATTGAAAGAGAATCATTGGAATCAAAAGAAGCAGTTATTGGTA
TGTTAAGTGTTGACCCAAGTTATCAATCGAGTGGTATTGGTTCAATTTTA
GTTAGATTAGCAGAAGGAGAAATAATAAAAACTTTCAATGTTTTTGAATC
ACATTTGCACGTTGTAAACGTACGTGATACTTTAATTGCATGGTACAATA
AATTAGGATACATAACTACTGAAACAACTTTTCCATTTGATGTTGATAGT
AATGTTGCATTAAAACAAATTCACTTTGTATTATTAGTAAAAAATTTATT
AAAAAAATAAATAAATAATAAATATAATATAATTTAATAT

Gap no gap
Contig length 590
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4326286
End point 4326876
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U07060
List of clone(s)

est1=VSK180Z,1,591
Translated Amino Acid sequence
VNWAYRGKDGTNPWATEKDLVTGFRVTPEMLHSDLNTDNKLMKLMLIEHIIEDNIDGASE
ASEATTTTTNTVSADQKRLIIGCVKIERESLESKEAVIGMLSVDPSYQSSGIGSILVRLA
EGEIIKTFNVFESHLHVVNVRDTLIAWYNKLGYITTETTFPFDVDSNVALKQIHFVLLVK
NLLKK*innkynii*y


Translated Amino Acid sequence (All Frames)
Frame A:
llighivvkmvqilgplkki**ldlelhqkcyiqi*iqtin**n*c*lni*lkiilmvhq
khqklqpplqilyqqikkd*lldalklkenhwnqkkqllvc*vltqvinrvvlvqf*ld*
qkek**klsmflnhictl*tyvil*lhgtin*dt*llkqlfhlmlivmlh*nkftlyy**
kiy*knk*iinii*fn


Frame B:
c*lgisw*rwykslgh*krfsnwi*sytrnvtfrfkyrq*ineinvn*tyn*r*y*wcir
sirsynhhykycisrskkinywmr*n*kriigikrssywyvkc*pklsiewywfnfs*is
rrrnnknfqcf*itfarckrt*yfncmvq*irihny*nnfsi*c***cciktnslciisk
kfikkink**i*ynli


Frame C:
VNWAYRGKDGTNPWATEKDLVTGFRVTPEMLHSDLNTDNKLMKLMLIEHIIEDNIDGASE
ASEATTTTTNTVSADQKRLIIGCVKIERESLESKEAVIGMLSVDPSYQSSGIGSILVRLA
EGEIIKTFNVFESHLHVVNVRDTLIAWYNKLGYITTETTFPFDVDSNVALKQIHFVLLVK
NLLKK*innkynii*y


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U07060-1 (Contig-U07060-1Q)
/CSM_Contig/Contig-U07060-1Q.Seq.d
(590 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U07060-1 (Contig-U07060-1Q) /CSM_Contig/Conti... 1065 0.0
Contig-U12355-1 (Contig-U12355-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U09680-1 (Contig-U09680-1Q) /CSM_Contig/Conti... 38 0.010
Contig-U12585-1 (Contig-U12585-1Q) /CSM_Contig/Conti... 36 0.041
Contig-U11039-1 (Contig-U11039-1Q) /CSM_Contig/Conti... 36 0.041
Contig-U06098-1 (Contig-U06098-1Q) /CSM_Contig/Conti... 36 0.041
Contig-U13346-1 (Contig-U13346-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U13177-1 (Contig-U13177-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U11881-1 (Contig-U11881-1Q) /CSM_Contig/Conti... 34 0.16
Contig-U11382-1 (Contig-U11382-1Q) /CSM_Contig/Conti... 34 0.16

>Contig-U07060-1 (Contig-U07060-1Q) /CSM_Contig/Contig-U07060-1Q.Seq.d
Length = 590

Score = 1065 bits (537), Expect = 0.0
Identities = 537/537 (100%)
Strand = Plus / Plus


Query: 1 ttgttaattgggcatatcgtggtaaagatggtacaaatccttgggccactgaaaaagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgttaattgggcatatcgtggtaaagatggtacaaatccttgggccactgaaaaagatt 60


Query: 61 tagtaactggatttagagttacaccagaaatgttacattcagatttaaatacagacaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagtaactggatttagagttacaccagaaatgttacattcagatttaaatacagacaata 120


Query: 121 aattaatgaaattaatgttaattgaacatataattgaagataatattgatggtgcatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattaatgaaattaatgttaattgaacatataattgaagataatattgatggtgcatcag 180


Query: 181 aagcatcagaagctacaaccaccactacaaatactgtatcagcagatcaaaaaagattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagcatcagaagctacaaccaccactacaaatactgtatcagcagatcaaaaaagattaa 240


Query: 241 ttattggatgcgttaaaattgaaagagaatcattggaatcaaaagaagcagttattggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttattggatgcgttaaaattgaaagagaatcattggaatcaaaagaagcagttattggta 300


Query: 301 tgttaagtgttgacccaagttatcaatcgagtggtattggttcaattttagttagattag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgttaagtgttgacccaagttatcaatcgagtggtattggttcaattttagttagattag 360


Query: 361 cagaaggagaaataataaaaactttcaatgtttttgaatcacatttgcacgttgtaaacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagaaggagaaataataaaaactttcaatgtttttgaatcacatttgcacgttgtaaacg 420


Query: 421 tacgtgatactttaattgcatggtacaataaattaggatacataactactgaaacaactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacgtgatactttaattgcatggtacaataaattaggatacataactactgaaacaactt 480


Query: 481 ttccatttgatgttgatagtaatgttgcattaaaacaaattcactttgtattattag 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttccatttgatgttgatagtaatgttgcattaaaacaaattcactttgtattattag 537


>Contig-U12355-1 (Contig-U12355-1Q) /CSM_Contig/Contig-U12355-1Q.Seq.d
Length = 777

Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 120 aaattaatgaaattaatgttaa 141
||||||||||||||||||||||
Sbjct: 221 aaattaatgaaattaatgttaa 242


>Contig-U09680-1 (Contig-U09680-1Q) /CSM_Contig/Contig-U09680-1Q.Seq.d
Length = 1272

Score = 38.2 bits (19), Expect = 0.010
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 122 attaatgaaattaatgtta 140
|||||||||||||||||||
Sbjct: 195 attaatgaaattaatgtta 213


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,467
Number of Sequences: 6905
Number of extensions: 10467
Number of successful extensions: 953
Number of sequences better than 10.0: 107
length of query: 590
length of database: 5,674,871
effective HSP length: 16
effective length of query: 574
effective length of database: 5,564,391
effective search space: 3193960434
effective search space used: 3193960434
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.11
Homology vs DNA
Query= Contig-U07060-1 (Contig-U07060-1Q) /CSM_Contig/Contig-U07060-1Q.Seq.d
(590 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU270767) Dictyostelium discoideum vegetative cDNA clone:VS... 1065 0.0 1
(CR388073) Zebrafish DNA sequence from clone CH211-197K16 in... 50 0.090 1
(BG203152) RST22528 Athersys RAGE Library Homo sapiens cDNA,... 50 0.090 1
(ER376292) 1093041176229 Global-Ocean-Sampling_GS-34-01-01-1... 36 0.29 3
(DB861098) Lipochromis sp. 'matumbi hunter' cDNA clone:hm739... 48 0.36 1
(AR549726) Sequence 4857 from patent US 6747137. 34 0.55 3
(BQ392074) NISC_mq22d04.y2 NICHD_XGC_Emb5 Xenopus (Silurana)... 36 0.57 2
(AL850805) Xenopus tropicalis EST, clone TEgg012k09 5'. 36 0.58 2
(AL788733) Xenopus tropicalis EST, clone TNeu106n22 5'. 36 0.58 2
(DC180244) Xenopus tropicalis NBRP cDNA clone:st55b15, 5' end. 36 0.63 2
(CX479355) JGI_XZG536.fwd NIH_XGC_tropGas7 Xenopus (Silurana... 36 0.67 2
(CX480308) JGI_XZG1109.fwd NIH_XGC_tropGas7 Xenopus (Siluran... 36 0.69 2
(BX697976) Xenopus tropicalis EST, clone TNeu121i01 3'. 36 0.70 2
(CX934597) JGI_CAAO3903.fwd NIH_XGC_tropTe5 Xenopus (Siluran... 36 0.72 2
(CX447615) JGI_XZG22699.fwd NIH_XGC_tropGas7 Xenopus (Silura... 36 0.75 2
(DR876585) JGI_CABI682.fwd NIH_XGC_tropOvi1 Xenopus (Siluran... 36 0.76 2
(DT406739) JGI_CABI8080.fwd NIH_XGC_tropOvi1 Xenopus (Silura... 36 0.77 2
(CU159538) Equus caballus GSS, BAC clone CH241-298A12, SP6 e... 34 1.0 2
(AL670886) Human DNA sequence from clone XXbac-88C14 on chro... 40 1.0 2
(CR933564) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 40 1.2 2
(AC122700) Homo sapiens chromosome 5 clone CTD-3136I2, compl... 44 1.3 2
(AC140035) Medicago truncatula clone mth2-25n18, complete se... 46 1.3 2
(AC161952) Bos taurus clone CH240-109J2, WORKING DRAFT SEQUE... 46 1.4 1
(AC230071) Bos taurus clone CH240-527H5, WORKING DRAFT SEQUE... 46 1.4 1
(AC224621) Bos taurus clone CH240-480A22, WORKING DRAFT SEQU... 46 1.4 1
(AC173150) Bos taurus clone CH240-527I8, WORKING DRAFT SEQUE... 46 1.4 1
(BJ331774) Dictyostelium discoideum cDNA clone:dda36d04, 5' ... 34 1.5 3
(CR354443) Human DNA sequence from clone DAMA-236L13 on chro... 40 1.5 2
(AX537054) Sequence 655 from Patent WO02064766. 34 1.7 4
(AR941732) Sequence 655 from patent US 7101990. 34 1.7 4
(AC108117) Homo sapiens chromosome 5 clone RP11-348K15, comp... 44 1.7 2
(AL132713) Human DNA sequence from clone RP1-71I17 on chromo... 40 1.8 2
(AF129756) Homo sapiens MSH55 gene, partial cds; and CLIC1, ... 40 2.0 2
(BZ399904) EINAZ68TF EI_10_12_KB Entamoeba invadens genomic ... 38 2.1 2
(AC221523) Bos taurus clone CH240-408O19, WORKING DRAFT SEQU... 44 2.1 2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 2.6 6
(CS039420) Sequence 230 from Patent WO2005019477. 40 3.4 2
(AC187201) Gossypium hirsutum chromosome unknown clone ZMMBB... 40 3.9 4
(AC196524) Homo sapiens chromosome 7 clone WI2-2078I2, *** S... 36 4.5 4
(EU178421) HIV-1 isolate XJN0171ENV01 from China envelope gl... 42 4.8 2
(EU178424) HIV-1 isolate XJN0171ENV03 from China envelope gl... 42 4.8 2
(EU178432) HIV-1 isolate XJN0171ENV11 from China envelope gl... 42 4.8 2
(EU178430) HIV-1 isolate XJN0171ENV09 from China envelope gl... 42 4.9 2
(EU178425) HIV-1 isolate XJN0171ENV04 from China envelope gl... 42 4.9 2
(AC209534) Medicago truncatula chromosome 2 BAC clone mth2-1... 36 5.3 4
(AC121800) Mus musculus BAC clone RP23-430F24 from 6, comple... 38 5.4 3
(CR628331) Zebrafish DNA sequence from clone DKEY-208C12 in ... 44 5.6 1
(BX470244) Zebrafish DNA sequence from clone CH211-8G12 in l... 44 5.6 1
(EF407651) HIV-1 isolate E348399_04 from Mozambique envelope... 44 5.6 1
(AY684933) HIV-1 isolate 01AOLFA91.14 clone 91.14 from Angol... 44 5.6 1
(AJ429893) Human immunodeficiency virus type 1 proviral part... 44 5.6 1
(AJ429885) Human immunodeficiency virus type 1 proviral part... 44 5.6 1
(AF061641) HIV-1 isolate HH8793 clone 12.1 from Finland, com... 44 5.6 1
(AF061640) HIV-1 isolate HH8793 clone 1.1 from Finland, comp... 44 5.6 1
(U67949) Caenorhabditis elegans cosmid F55A4, complete seque... 44 5.6 1
(AY224389) Dictyostelium discoideum p67-like superoxide-gene... 44 5.6 1
(AY221172) Dictyostelium discoideum p67-like superoxide-gene... 44 5.6 1
(AB070500) Torymus sp. 1(eno5) COI gene for cytochrome c oxi... 44 5.6 1
(AC208927) Zea mays chromosome 6 clone CH201-448A7; ZMMBBc04... 44 5.6 1
(AC205575) Zea mays chromosome 9 clone CH201-140K10; ZMMBBc0... 44 5.6 1
(AC184622) Strongylocentrotus purpuratus clone R3-3026D3, WO... 44 5.6 1
(AC179821) Strongylocentrotus purpuratus clone R3-1012O11, W... 44 5.6 1
(AC178146) Strongylocentrotus purpuratus clone R3-3078N8, WO... 44 5.6 1
(AC177614) Strongylocentrotus purpuratus clone R3-1023F7, WO... 44 5.6 1
(AC176246) Strongylocentrotus purpuratus clone R3-3062C4, WO... 44 5.6 1
(BH161606) ENTRK60TF Entamoeba histolytica Sheared DNA Entam... 44 5.6 1
(BH134609) ENTOW47TF Entamoeba histolytica Sheared DNA Entam... 44 5.6 1
(AZ527057) 262PbG11 Pb MBN #21 Plasmodium berghei genomic 3'... 44 5.6 1
(CW451578) fsbb001f191l09k0 Sorghum methylation filtered lib... 44 5.6 1
(CW324304) 104_818_11477089_116_35902_001 Sorghum methylatio... 44 5.6 1
(CW238786) 104_695_11216920_148_37420_052 Sorghum methylatio... 44 5.6 1
(CW238785) 104_695_11216920_116_37419_052 Sorghum methylatio... 44 5.6 1
(CL083662) ISB1-2D7_Sp6.1 ISB1 Xenopus (Silurana) tropicalis... 44 5.6 1
(CE329570) tigr-gss-dog-17000333972797 Dog Library Canis lup... 44 5.6 1
(BZ729610) OGEBZ51TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.6 1
(BZ337649) ia90b03.g1 WGS-SbicolorF (JM107 adapted methyl fi... 44 5.6 1
(DY801394) MTUNUL1.P61.E09 NUL Populus fremontii x Populus a... 44 5.6 1
(DN196419) USDA-FP_133130 5th Instar Glassy-winged Sharpshoo... 44 5.6 1
(CX183068) F01_45-32_11.ab1 leaf inoculated with Marssonia p... 44 5.6 1
(BJ445072) Dictyostelium discoideum cDNA clone:ddv58i12, 3' ... 44 5.6 1
(EY263064) BF01033B1C02.f1 Normalized subtracted keck librar... 44 5.6 1
(CP000033) Lactobacillus acidophilus NCFM, complete genome. 44 5.6 1
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 44 5.6 1
(FF570581) TTEB336THB Tetrahymena thermophila conjugation cD... 38 5.6 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 5.6 8
(CX582537) TTE00019264 Amplicon Express - Conjugative Form T... 38 5.9 2
(AC104619) Homo sapiens BAC clone RP11-192C21 from 4, comple... 40 6.2 4
(AC181084) Strongylocentrotus purpuratus clone R3-3048L10, W... 36 7.1 5
(AL136446) Human DNA sequence from clone RP3-446I19 on chrom... 36 7.3 3
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 7.5 6
(AP009675) Lotus japonicus genomic DNA, chromosome 2, clone:... 38 7.5 3
(AC146469) Pan troglodytes clone rp43-45g24, complete sequence. 32 8.1 7
(BB666647) Mus musculus 2 days pregnant adult female ovary c... 40 8.1 2
(CU914513) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.0 4
(AC157641) Rhinolophus ferrumequinum clone VMRC7-215A14, WOR... 34 9.2 5
(ED374959) AUAC-aaf81g10.b1 Ascaris suum whole genome shotgu... 38 9.6 2
(EJ272106) 1095353020898 Global-Ocean-Sampling_GS-27-01-01-1... 34 9.6 2
(ED320534) AUAC-aaf81g09.b1 Ascaris suum whole genome shotgu... 38 9.7 2

>(AU270767) Dictyostelium discoideum vegetative cDNA clone:VSK180,
3' end single read.
Length = 591

Score = 1065 bits (537), Expect = 0.0
Identities = 537/537 (100%)
Strand = Plus / Plus


Query: 1 ttgttaattgggcatatcgtggtaaagatggtacaaatccttgggccactgaaaaagatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgttaattgggcatatcgtggtaaagatggtacaaatccttgggccactgaaaaagatt 60


Query: 61 tagtaactggatttagagttacaccagaaatgttacattcagatttaaatacagacaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tagtaactggatttagagttacaccagaaatgttacattcagatttaaatacagacaata 120


Query: 121 aattaatgaaattaatgttaattgaacatataattgaagataatattgatggtgcatcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattaatgaaattaatgttaattgaacatataattgaagataatattgatggtgcatcag 180


Query: 181 aagcatcagaagctacaaccaccactacaaatactgtatcagcagatcaaaaaagattaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagcatcagaagctacaaccaccactacaaatactgtatcagcagatcaaaaaagattaa 240


Query: 241 ttattggatgcgttaaaattgaaagagaatcattggaatcaaaagaagcagttattggta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttattggatgcgttaaaattgaaagagaatcattggaatcaaaagaagcagttattggta 300


Query: 301 tgttaagtgttgacccaagttatcaatcgagtggtattggttcaattttagttagattag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgttaagtgttgacccaagttatcaatcgagtggtattggttcaattttagttagattag 360


Query: 361 cagaaggagaaataataaaaactttcaatgtttttgaatcacatttgcacgttgtaaacg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cagaaggagaaataataaaaactttcaatgtttttgaatcacatttgcacgttgtaaacg 420


Query: 421 tacgtgatactttaattgcatggtacaataaattaggatacataactactgaaacaactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tacgtgatactttaattgcatggtacaataaattaggatacataactactgaaacaactt 480


Query: 481 ttccatttgatgttgatagtaatgttgcattaaaacaaattcactttgtattattag 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttccatttgatgttgatagtaatgttgcattaaaacaaattcactttgtattattag 537

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 674,326,046
Number of extensions: 40662339
Number of successful extensions: 3388531
Number of sequences better than 10.0: 98
Length of query: 590
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 567
Effective length of database: 93,106,754,628
Effective search space: 52791529874076
Effective search space used: 52791529874076
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.23
Homology vs Protein
Query= Contig-U07060-1 (Contig-U07060-1Q) /CSM_Contig/Contig-U07060-1Q.Seq.d
(590 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

BA000030_1498(BA000030|pid:none) Streptomyces avermitilis MA-468... 69 7e-11
BX842656_10(BX842656|pid:none) Bdellovibrio bacteriovorus comple... 66 6e-10
AM238663_1084(AM238663|pid:none) Streptomyces ambofaciens ATCC 2... 66 8e-10
AM743169_1089(AM743169|pid:none) Stenotrophomonas maltophilia K2... 64 4e-09
CP000248_1301(CP000248|pid:none) Novosphingobium aromaticivorans... 62 2e-08
CP000820_2459(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 61 2e-08
AE008922_2723(AE008922|pid:none) Xanthomonas campestris pv. camp... 60 6e-08
AM920689_1413(AM920689|pid:none) Xanthomonas campestris pv. camp... 60 6e-08
AE013598_1381(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 59 1e-07
CP000863_2042(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 58 2e-07
CP000685_2557(CP000685|pid:none) Flavobacterium johnsoniae UW101... 58 2e-07
CP001111_995(CP001111|pid:none) Stenotrophomonas maltophilia R55... 58 2e-07
CP000521_2123(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 57 5e-07
CT573213_4195(CT573213|pid:none) Frankia alni str. ACN14A chromo... 55 2e-06
CP000473_6224(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 54 4e-06
CP001472_2976(CP001472|pid:none) Acidobacterium capsulatum ATCC ... 51 2e-05
AE005673_868(AE005673|pid:none) Caulobacter crescentus CB15, com... 51 3e-05
CP000713_1963(CP000713|pid:none) Psychrobacter sp. PRwf-1, compl... 50 3e-05
CP000481_1464(CP000481|pid:none) Acidothermus cellulolyticus 11B... 50 6e-05
AL590447_167(AL590447|pid:none) chromosome VII of strain GB-M1 o... 41 0.028
BA000045_1640(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 40 0.036
CP001098_289(CP001098|pid:none) Halothermothrix orenii H 168, co... 39 0.080
AM902716_1881(AM902716|pid:none) Bordetella petrii strain DSM 12... 38 0.18
CR382136_880(CR382136|pid:none) Debaryomyces hansenii chromosome... 38 0.18
CP000721_2651(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 37 0.31
AM270294_32(AM270294|pid:none) Aspergillus niger contig An12c038... 37 0.31
CP000777_44(CP000777|pid:none) Leptospira biflexa serovar Patoc ... 37 0.31
CP001393_1040(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 37 0.40
CP000227_2341(CP000227|pid:none) Bacillus cereus Q1, complete ge... 37 0.52
FN392321_237(FN392321|pid:none) Pichia pastoris GS115 chromosome... 37 0.52
BX294154_57(BX294154|pid:none) Rhodopirellula baltica SH 1 compl... 37 0.52
AE017355_2312(AE017355|pid:none) Bacillus thuringiensis serovar ... 37 0.52
CP000001_2277(CP000001|pid:none) Bacillus cereus E33L, complete ... 37 0.52
AE014299_3095(AE014299|pid:none) Shewanella oneidensis MR-1, com... 36 0.89
AP002844_16(AP002844|pid:none) Oryza sativa Japonica Group genom... 36 0.89
AK241100_1(AK241100|pid:none) Oryza sativa Japonica Group cDNA, ... 36 0.89
BA000030_6793(BA000030|pid:none) Streptomyces avermitilis MA-468... 36 0.89
CP001349_5675(CP001349|pid:none) Methylobacterium nodulans ORS 2... 35 1.2
CP001176_2385(CP001176|pid:none) Bacillus cereus B4264, complete... 35 1.2
FM992691_152(FM992691|pid:none) Candida dubliniensis CD36 chromo... 35 1.2
CP001186_2377(CP001186|pid:none) Bacillus cereus G9842, complete... 35 1.2
AE017194_2549(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 35 1.2
AL939109_119(AL939109|pid:none) Streptomyces coelicolor A3(2) co... 35 1.2
BA000023_2235(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 35 1.2
CP000352_3383(CP000352|pid:none) Ralstonia metallidurans CH34, c... 35 1.5
CP000749_1573(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 35 2.0
CP000485_2183(CP000485|pid:none) Bacillus thuringiensis str. Al ... 34 2.6
CP000675_580(CP000675|pid:none) Legionella pneumophila str. Corb... 34 2.6
AE016796_810(AE016796|pid:none) Vibrio vulnificus CMCP6 chromoso... 34 2.6
CR628337_561(CR628337|pid:none) Legionella pneumophila str. Lens... 34 2.6
CR628338_125(CR628338|pid:none) Legionella pneumophila str. Pari... 34 2.6
AF449195_5(AF449195|pid:none) Vibrio cholerae putative Kdo kinas... 34 2.6
CP000937_74(CP000937|pid:none) Francisella philomiragia subsp. p... 34 2.6
AE017354_511(AE017354|pid:none) Legionella pneumophila subsp. pn... 34 2.6
CP001349_2819(CP001349|pid:none) Methylobacterium nodulans ORS 2... 34 3.4
CP001087_1705(CP001087|pid:none) Desulfobacterium autotrophicum ... 34 3.4
CP000853_1898(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 34 3.4
CR382127_336(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 34 3.4
CP000764_1566(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 34 3.4
EU961085_1(EU961085|pid:none) Zea mays clone 232718 pre-mRNA-spl... 34 3.4
AE016877_1221(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 33 5.8
CR859753_1(CR859753|pid:none) Pongo abelii mRNA; cDNA DKFZp469C1... 33 5.8
AE016853_3493(AE016853|pid:none) Pseudomonas syringae pv. tomato... 33 5.8
AP006840_1999(AP006840|pid:none) Symbiobacterium thermophilum IA... 33 5.8
CP001327_631(CP001327|pid:none) Micromonas sp. RCC299 chromosome... 33 5.8
CR382123_422(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 33 5.8
CP000001_1983(CP000001|pid:none) Bacillus cereus E33L, complete ... 33 5.8
CP000485_1880(CP000485|pid:none) Bacillus thuringiensis str. Al ... 33 5.8
AE016879_2046(AE016879|pid:none) Bacillus anthracis str. Ames, c... 33 5.8
CP000749_1823(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 33 7.5
AM286415_33(AM286415|pid:none) Yersinia enterocolitica subsp. en... 33 7.5
BX571868_93(BX571868|pid:none) Photorhabdus luminescens subsp. l... 33 7.5
CP000485_2805(CP000485|pid:none) Bacillus thuringiensis str. Al ... 33 7.5
CP001407_2489(CP001407|pid:none) Bacillus cereus 03BB102, comple... 33 7.5
EU964303_1(EU964303|pid:none) Zea mays clone 277762 N-acetyltran... 32 9.8
CR628336_586(CR628336|pid:none) Legionella pneumophila str. Pari... 32 9.8
CP000254_2471(CP000254|pid:none) Methanospirillum hungatei JF-1,... 32 9.8
AP008955_1784(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 32 9.8
CP000090_1669(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 32 9.8
CP000790_905(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 chr... 32 9.8
CP000738_2741(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 32 9.8
AK227523_1(AK227523|pid:none) Arabidopsis thaliana mRNA for sepa... 32 9.8
CP001186_1239(CP001186|pid:none) Bacillus cereus G9842, complete... 32 9.8
CP000003_862(CP000003|pid:none) Streptococcus pyogenes MGAS10394... 32 9.8

>BA000030_1498(BA000030|pid:none) Streptomyces avermitilis MA-4680
DNA, complete genome.
Length = 179

Score = 69.3 bits (168), Expect = 7e-11
Identities = 43/159 (27%), Positives = 70/159 (44%)
Frame = +3

Query: 12 AYRGKDGTNPWATEKDLVTGFRVTPEMLHSDLNTDNKLMKLMLIEHIIEDNIDGXXXXXX 191
AYRG W TE D++ G R PE + + + + + +L+ +E
Sbjct: 28 AYRGDASRAGWTTEADILEGQRTDPEGVRAVIKSSDS--RLLTVE--------------- 70

Query: 192 XXXXXXXXXXXDQKRLIIGCVKIERESLESKEAVIGMLSVDPSYQSSGIGSILVRLAEGE 371
+ ++ C ++E A GM +V P+ Q G+G +++ AE
Sbjct: 71 ------------RAGAVVACCQLEHRG---DHAYFGMFAVSPALQGGGLGKVIIGEAERA 115

Query: 372 IIKTFNVFESHLHVVNVRDTLIAWYNKLGYITTETTFPF 488
+ + V H+ V++VRD LIAWY + GY T T PF
Sbjct: 116 AREAWGVAAMHMTVISVRDDLIAWYERRGYRRTGETTPF 154

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 715,526,263
Number of extensions: 11056630
Number of successful extensions: 27081
Number of sequences better than 10.0: 84
Number of HSP's gapped: 27065
Number of HSP's successfully gapped: 90
Length of query: 196
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 74
Effective length of database: 650,044,009
Effective search space: 48103256666
Effective search space used: 48103256666
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.69 gvh: 0.28 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
20.0 %: cytoskeletal
20.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for Contig-U07060-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0