Contig-U07060-1 |
Contig ID |
Contig-U07060-1 |
Contig update |
2001. 8.30 |
Contig sequence |
|
Gap |
no gap |
Contig length |
590 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
4326286 |
End point |
4326876 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U07060 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.11 |
Homology vs DNA |
Query= Contig-U07060-1 (Contig-U07060-1Q) /CSM_Contig/Contig-U07060-1Q.Seq.d (590 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU270767) Dictyostelium discoideum vegetative cDNA clone:VS... 1065 0.0 1 (CR388073) Zebrafish DNA sequence from clone CH211-197K16 in... 50 0.090 1 (BG203152) RST22528 Athersys RAGE Library Homo sapiens cDNA,... 50 0.090 1 (ER376292) 1093041176229 Global-Ocean-Sampling_GS-34-01-01-1... 36 0.29 3 (DB861098) Lipochromis sp. 'matumbi hunter' cDNA clone:hm739... 48 0.36 1 (AR549726) Sequence 4857 from patent US 6747137. 34 0.55 3 (BQ392074) NISC_mq22d04.y2 NICHD_XGC_Emb5 Xenopus (Silurana)... 36 0.57 2 (AL850805) Xenopus tropicalis EST, clone TEgg012k09 5'. 36 0.58 2 (AL788733) Xenopus tropicalis EST, clone TNeu106n22 5'. 36 0.58 2 (DC180244) Xenopus tropicalis NBRP cDNA clone:st55b15, 5' end. 36 0.63 2 (CX479355) JGI_XZG536.fwd NIH_XGC_tropGas7 Xenopus (Silurana... 36 0.67 2 (CX480308) JGI_XZG1109.fwd NIH_XGC_tropGas7 Xenopus (Siluran... 36 0.69 2 (BX697976) Xenopus tropicalis EST, clone TNeu121i01 3'. 36 0.70 2 (CX934597) JGI_CAAO3903.fwd NIH_XGC_tropTe5 Xenopus (Siluran... 36 0.72 2 (CX447615) JGI_XZG22699.fwd NIH_XGC_tropGas7 Xenopus (Silura... 36 0.75 2 (DR876585) JGI_CABI682.fwd NIH_XGC_tropOvi1 Xenopus (Siluran... 36 0.76 2 (DT406739) JGI_CABI8080.fwd NIH_XGC_tropOvi1 Xenopus (Silura... 36 0.77 2 (CU159538) Equus caballus GSS, BAC clone CH241-298A12, SP6 e... 34 1.0 2 (AL670886) Human DNA sequence from clone XXbac-88C14 on chro... 40 1.0 2 (CR933564) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 40 1.2 2 (AC122700) Homo sapiens chromosome 5 clone CTD-3136I2, compl... 44 1.3 2 (AC140035) Medicago truncatula clone mth2-25n18, complete se... 46 1.3 2 (AC161952) Bos taurus clone CH240-109J2, WORKING DRAFT SEQUE... 46 1.4 1 (AC230071) Bos taurus clone CH240-527H5, WORKING DRAFT SEQUE... 46 1.4 1 (AC224621) Bos taurus clone CH240-480A22, WORKING DRAFT SEQU... 46 1.4 1 (AC173150) Bos taurus clone CH240-527I8, WORKING DRAFT SEQUE... 46 1.4 1 (BJ331774) Dictyostelium discoideum cDNA clone:dda36d04, 5' ... 34 1.5 3 (CR354443) Human DNA sequence from clone DAMA-236L13 on chro... 40 1.5 2 (AX537054) Sequence 655 from Patent WO02064766. 34 1.7 4 (AR941732) Sequence 655 from patent US 7101990. 34 1.7 4 (AC108117) Homo sapiens chromosome 5 clone RP11-348K15, comp... 44 1.7 2 (AL132713) Human DNA sequence from clone RP1-71I17 on chromo... 40 1.8 2 (AF129756) Homo sapiens MSH55 gene, partial cds; and CLIC1, ... 40 2.0 2 (BZ399904) EINAZ68TF EI_10_12_KB Entamoeba invadens genomic ... 38 2.1 2 (AC221523) Bos taurus clone CH240-408O19, WORKING DRAFT SEQU... 44 2.1 2 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 2.6 6 (CS039420) Sequence 230 from Patent WO2005019477. 40 3.4 2 (AC187201) Gossypium hirsutum chromosome unknown clone ZMMBB... 40 3.9 4 (AC196524) Homo sapiens chromosome 7 clone WI2-2078I2, *** S... 36 4.5 4 (EU178421) HIV-1 isolate XJN0171ENV01 from China envelope gl... 42 4.8 2 (EU178424) HIV-1 isolate XJN0171ENV03 from China envelope gl... 42 4.8 2 (EU178432) HIV-1 isolate XJN0171ENV11 from China envelope gl... 42 4.8 2 (EU178430) HIV-1 isolate XJN0171ENV09 from China envelope gl... 42 4.9 2 (EU178425) HIV-1 isolate XJN0171ENV04 from China envelope gl... 42 4.9 2 (AC209534) Medicago truncatula chromosome 2 BAC clone mth2-1... 36 5.3 4 (AC121800) Mus musculus BAC clone RP23-430F24 from 6, comple... 38 5.4 3 (CR628331) Zebrafish DNA sequence from clone DKEY-208C12 in ... 44 5.6 1 (BX470244) Zebrafish DNA sequence from clone CH211-8G12 in l... 44 5.6 1 (EF407651) HIV-1 isolate E348399_04 from Mozambique envelope... 44 5.6 1 (AY684933) HIV-1 isolate 01AOLFA91.14 clone 91.14 from Angol... 44 5.6 1 (AJ429893) Human immunodeficiency virus type 1 proviral part... 44 5.6 1 (AJ429885) Human immunodeficiency virus type 1 proviral part... 44 5.6 1 (AF061641) HIV-1 isolate HH8793 clone 12.1 from Finland, com... 44 5.6 1 (AF061640) HIV-1 isolate HH8793 clone 1.1 from Finland, comp... 44 5.6 1 (U67949) Caenorhabditis elegans cosmid F55A4, complete seque... 44 5.6 1 (AY224389) Dictyostelium discoideum p67-like superoxide-gene... 44 5.6 1 (AY221172) Dictyostelium discoideum p67-like superoxide-gene... 44 5.6 1 (AB070500) Torymus sp. 1(eno5) COI gene for cytochrome c oxi... 44 5.6 1 (AC208927) Zea mays chromosome 6 clone CH201-448A7; ZMMBBc04... 44 5.6 1 (AC205575) Zea mays chromosome 9 clone CH201-140K10; ZMMBBc0... 44 5.6 1 (AC184622) Strongylocentrotus purpuratus clone R3-3026D3, WO... 44 5.6 1 (AC179821) Strongylocentrotus purpuratus clone R3-1012O11, W... 44 5.6 1 (AC178146) Strongylocentrotus purpuratus clone R3-3078N8, WO... 44 5.6 1 (AC177614) Strongylocentrotus purpuratus clone R3-1023F7, WO... 44 5.6 1 (AC176246) Strongylocentrotus purpuratus clone R3-3062C4, WO... 44 5.6 1 (BH161606) ENTRK60TF Entamoeba histolytica Sheared DNA Entam... 44 5.6 1 (BH134609) ENTOW47TF Entamoeba histolytica Sheared DNA Entam... 44 5.6 1 (AZ527057) 262PbG11 Pb MBN #21 Plasmodium berghei genomic 3'... 44 5.6 1 (CW451578) fsbb001f191l09k0 Sorghum methylation filtered lib... 44 5.6 1 (CW324304) 104_818_11477089_116_35902_001 Sorghum methylatio... 44 5.6 1 (CW238786) 104_695_11216920_148_37420_052 Sorghum methylatio... 44 5.6 1 (CW238785) 104_695_11216920_116_37419_052 Sorghum methylatio... 44 5.6 1 (CL083662) ISB1-2D7_Sp6.1 ISB1 Xenopus (Silurana) tropicalis... 44 5.6 1 (CE329570) tigr-gss-dog-17000333972797 Dog Library Canis lup... 44 5.6 1 (BZ729610) OGEBZ51TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 44 5.6 1 (BZ337649) ia90b03.g1 WGS-SbicolorF (JM107 adapted methyl fi... 44 5.6 1 (DY801394) MTUNUL1.P61.E09 NUL Populus fremontii x Populus a... 44 5.6 1 (DN196419) USDA-FP_133130 5th Instar Glassy-winged Sharpshoo... 44 5.6 1 (CX183068) F01_45-32_11.ab1 leaf inoculated with Marssonia p... 44 5.6 1 (BJ445072) Dictyostelium discoideum cDNA clone:ddv58i12, 3' ... 44 5.6 1 (EY263064) BF01033B1C02.f1 Normalized subtracted keck librar... 44 5.6 1 (CP000033) Lactobacillus acidophilus NCFM, complete genome. 44 5.6 1 (AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 44 5.6 1 (FF570581) TTEB336THB Tetrahymena thermophila conjugation cD... 38 5.6 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 5.6 8 (CX582537) TTE00019264 Amplicon Express - Conjugative Form T... 38 5.9 2 (AC104619) Homo sapiens BAC clone RP11-192C21 from 4, comple... 40 6.2 4 (AC181084) Strongylocentrotus purpuratus clone R3-3048L10, W... 36 7.1 5 (AL136446) Human DNA sequence from clone RP3-446I19 on chrom... 36 7.3 3 (AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 7.5 6 (AP009675) Lotus japonicus genomic DNA, chromosome 2, clone:... 38 7.5 3 (AC146469) Pan troglodytes clone rp43-45g24, complete sequence. 32 8.1 7 (BB666647) Mus musculus 2 days pregnant adult female ovary c... 40 8.1 2 (CU914513) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.0 4 (AC157641) Rhinolophus ferrumequinum clone VMRC7-215A14, WOR... 34 9.2 5 (ED374959) AUAC-aaf81g10.b1 Ascaris suum whole genome shotgu... 38 9.6 2 (EJ272106) 1095353020898 Global-Ocean-Sampling_GS-27-01-01-1... 34 9.6 2 (ED320534) AUAC-aaf81g09.b1 Ascaris suum whole genome shotgu... 38 9.7 2
>(AU270767) Dictyostelium discoideum vegetative cDNA clone:VSK180, 3' end single read. Length = 591
Score = 1065 bits (537), Expect = 0.0 Identities = 537/537 (100%) Strand = Plus / Plus
Query: 1 ttgttaattgggcatatcgtggtaaagatggtacaaatccttgggccactgaaaaagatt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ttgttaattgggcatatcgtggtaaagatggtacaaatccttgggccactgaaaaagatt 60
Query: 61 tagtaactggatttagagttacaccagaaatgttacattcagatttaaatacagacaata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tagtaactggatttagagttacaccagaaatgttacattcagatttaaatacagacaata 120
Query: 121 aattaatgaaattaatgttaattgaacatataattgaagataatattgatggtgcatcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aattaatgaaattaatgttaattgaacatataattgaagataatattgatggtgcatcag 180
Query: 181 aagcatcagaagctacaaccaccactacaaatactgtatcagcagatcaaaaaagattaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aagcatcagaagctacaaccaccactacaaatactgtatcagcagatcaaaaaagattaa 240
Query: 241 ttattggatgcgttaaaattgaaagagaatcattggaatcaaaagaagcagttattggta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ttattggatgcgttaaaattgaaagagaatcattggaatcaaaagaagcagttattggta 300
Query: 301 tgttaagtgttgacccaagttatcaatcgagtggtattggttcaattttagttagattag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tgttaagtgttgacccaagttatcaatcgagtggtattggttcaattttagttagattag 360
Query: 361 cagaaggagaaataataaaaactttcaatgtttttgaatcacatttgcacgttgtaaacg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 cagaaggagaaataataaaaactttcaatgtttttgaatcacatttgcacgttgtaaacg 420
Query: 421 tacgtgatactttaattgcatggtacaataaattaggatacataactactgaaacaactt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tacgtgatactttaattgcatggtacaataaattaggatacataactactgaaacaactt 480
Query: 481 ttccatttgatgttgatagtaatgttgcattaaaacaaattcactttgtattattag 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ttccatttgatgttgatagtaatgttgcattaaaacaaattcactttgtattattag 537
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 674,326,046 Number of extensions: 40662339 Number of successful extensions: 3388531 Number of sequences better than 10.0: 98 Length of query: 590 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 567 Effective length of database: 93,106,754,628 Effective search space: 52791529874076 Effective search space used: 52791529874076 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.23 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |