| Contig-U07057-1 |
| Contig ID |
Contig-U07057-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
579 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
2787728 |
| End point |
2788218 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U07057 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.11 |
| Homology vs DNA |
Query= Contig-U07057-1 (Contig-U07057-1Q) /CSM_Contig/Contig-U07057-1Q.Seq.d
(579 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU270747) Dictyostelium discoideum vegetative cDNA clone:VS... 398 0.0 5
(AU270746) Dictyostelium discoideum vegetative cDNA clone:VS... 664 0.0 2
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 0.062 7
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.068 11
(AZ683053) ENTMO06TF Entamoeba histolytica Sheared DNA Entam... 34 0.26 2
(BH162035) ENTSW54TF Entamoeba histolytica Sheared DNA Entam... 34 0.26 2
(BH155903) ENTSX53TR Entamoeba histolytica Sheared DNA Entam... 34 0.26 2
(AB197095) Entamoeba histolytica gene for small GTPase EhRab... 34 0.26 2
(ET126509) MEPcgc641.1p1p2_p1.h_013 Merino Pool PCR library ... 34 0.27 2
(EE655501) CHES5232.b1_O12.ab1 CHE(LMS) serpentine sunflower... 48 0.35 1
(CT573388) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 0.46 6
(AC158812) Bos taurus clone CH240-71B21, WORKING DRAFT SEQUE... 42 0.92 7
(AC110714) Rattus norvegicus clone CH230-168F19, *** SEQUENC... 38 1.1 4
(AL772179) Mouse DNA sequence from clone RP23-100B18 on chro... 46 1.4 1
(AC184420) Strongylocentrotus purpuratus clone R3-3114A21, W... 46 1.4 1
(AC181540) Strongylocentrotus purpuratus clone R3-7E18, WORK... 46 1.4 1
(AC180095) Strongylocentrotus purpuratus clone R3-4007N6, WO... 46 1.4 1
(AC179170) Strongylocentrotus purpuratus clone R3-4016G24, W... 46 1.4 1
(AC178918) Strongylocentrotus purpuratus clone R3-3115F1, WO... 46 1.4 1
(DX943230) CHORI105-33G1.TF CHORI105.pEpiFOS5 Trypanosoma cr... 46 1.4 1
(EB239074) PEG003-C-224959-501 Normalized Pedal-Pleural Gang... 46 1.4 1
(EB207769) PEG002-C-009168-301 Normalized Pedal-Pleural Gang... 46 1.4 1
(BX897664) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 1.4 5
(CT009545) M.truncatula DNA sequence from clone MTH2-107B14 ... 36 1.6 5
(BX255911) Zebrafish DNA sequence from clone DKEY-274C14 in ... 42 1.8 3
(BX119967) Mouse DNA sequence from clone RP23-362M13 on chro... 36 2.5 3
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 2.6 2
(AU308345) Zinnia elegans cDNA, clone:Z18325. 36 3.0 2
(AC186388) Pan troglodytes BAC clone CH251-655D14 from chrom... 38 3.4 5
(AL593854) Human DNA sequence from clone RP11-423B13 on chro... 42 4.4 4
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 4.6 4
(BX539324) Zebrafish DNA sequence from clone DKEY-225G6 in l... 38 4.6 3
(BX914210) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 5.4 2
(AL953894) Zebrafish DNA sequence from clone CH211-212B13 in... 44 5.5 1
(AC123945) Mus musculus BAC clone RP24-87G13 from chromosome... 44 5.5 1
(AC034255) Mus musculus strain C57BL6/J chromosome 6 clone R... 44 5.5 1
(AM477212) Vitis vinifera, whole genome shotgun sequence, co... 44 5.5 1
(BX538336) Homo sapiens genomic DNA; cDNA DKFZp686B24208 (fr... 44 5.5 1
(AC005220) Homo sapiens chromosome 20, BAC clone 99 (LBNL H8... 44 5.5 1
(CR382365) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.5 1
(AC230937) Bos taurus clone CH240-495B6, WORKING DRAFT SEQUE... 44 5.5 1
(AC176909) Strongylocentrotus purpuratus clone R3-1104M4, WO... 44 5.5 1
(AC021963) Homo sapiens chromosome 20 clone RP11-469D15 map ... 44 5.5 1
(AQ733910) HS_5560_A2_H11_SP6E RPCI-11 Human Male BAC Librar... 44 5.5 1
(ER486940) 1093015304694 Global-Ocean-Sampling_GS-35-01-01-1... 44 5.5 1
(ER345407) 1092344377371 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.5 1
(EJ346879) 1092963553773 Global-Ocean-Sampling_GS-28-01-01-1... 44 5.5 1
(ED561604) MUGQ_CH252P142G24T7_CN144_090 CHORI-252 Vervet Mo... 44 5.5 1
(DH788080) Rattus norvegicus DNA, BAC clone: RNB1-378O10, 5'... 44 5.5 1
(DH664912) Rattus norvegicus DNA, BAC clone: RNB1-212K17, 3'... 44 5.5 1
(DW070828) CLLZ2204.b1_G24.ab1 CLL(XYZ) lettuce saligna Lact... 44 5.5 1
(DW070674) CLLZ2046.b1_L07.ab1 CLL(XYZ) lettuce saligna Lact... 44 5.5 1
(CO812755) AGENCOURT_30347630 NIH_ZGC_14 Danio rerio cDNA cl... 44 5.5 1
(FF636042) G825P576RH4.T0 Acorn worm normalized gastrula pEx... 44 5.5 1
(AL080277) Human DNA sequence from clone RP1-308E17 on chrom... 42 5.7 5
(AC166943) Bos taurus clone CH240-190P21, WORKING DRAFT SEQU... 34 6.2 4
(AC175840) Strongylocentrotus purpuratus clone R3-15M12, WOR... 38 6.3 5
(AC168896) Bos taurus clone CH240-189B8, WORKING DRAFT SEQUE... 34 6.5 6
(AC107301) Homo sapiens 3 BAC RP11-544A22 (Roswell Park Canc... 36 6.7 7
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 7.5 3
(DE275870) Oryzias latipes DNA, clone: ola1-227M16.R, genomi... 40 7.7 2
(AC128057) Rattus norvegicus clone CH230-17I11, WORKING DRAF... 38 7.9 2
(AM432442) Vitis vinifera contig VV78X247993.7, whole genome... 40 7.9 2
(AC137220) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 38 8.0 2
(EL494925) D10_PFBAMHI-L-T7-PLATE1A.AB1 Blood stage Plasmodi... 38 9.2 2
(AC179405) Strongylocentrotus purpuratus clone R3-60O1, WORK... 38 9.2 5
(EL501994) A05_PFLAB1-L-PLATE14B.AB1 Blood stage Plasmodium ... 38 9.3 2
(DH081181) Oryzias latipes Fosmid clone:GOLWFno160_n02, reve... 30 9.3 3
(AL928886) Mouse DNA sequence from clone RP23-267D10 on chro... 38 9.4 5
(AC094142) Rattus norvegicus clone CH230-2L10, *** SEQUENCIN... 32 9.6 2
(FH184656) CHO_OF3427xo05f1.ab1 CHO_OF3 Nicotiana tabacum ge... 40 9.6 2
(AC189414) Brassica rapa subsp. pekinensis clone KBrB061K11,... 40 9.7 6
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 30 9.8 13
(CU915701) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 9.8 2
>(AU270747) Dictyostelium discoideum vegetative cDNA clone:VSK168,
3' end single read.
Length = 567
Score = 398 bits (201), Expect(5) = 0.0
Identities = 201/201 (100%)
Strand = Plus / Plus
Query: 138 ttgaagagaatttacaaaatgaaagtttaactttaaaattatcaagatttataatgtatt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ttgaagagaatttacaaaatgaaagtttaactttaaaattatcaagatttataatgtatt 186
Query: 198 ttagatctgtattaccagaattatttagtcattttgaagaagaagaaattaatagtaatg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttagatctgtattaccagaattatttagtcattttgaagaagaagaaattaatagtaatg 246
Query: 258 attgggcaacaagttggattcaaaattatttatcatgtgaattaccaattgaatgtacac 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 attgggcaacaagttggattcaaaattatttatcatgtgaattaccaattgaatgtacac 306
Query: 318 ttagattatgggatacttatt 338
|||||||||||||||||||||
Sbjct: 307 ttagattatgggatacttatt 327
Score = 317 bits (160), Expect(5) = 0.0
Identities = 162/163 (99%)
Strand = Plus / Plus
Query: 359 tggatttacatgtttatgtttgtttagcaattntaacaaatttctctgaagaattattag 418
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 346 tggatttacatgtttatgtttgtttagcaattttaacaaatttctctgaagaattattag 405
Query: 419 aattggaacatagtgaaatcttatcttttcttcaacatttacctggtattgatattgatc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aattggaacatagtgaaatcttatcttttcttcaacatttacctggtattgatattgatc 465
Query: 479 aaattatagctcaagcttataatatttttgatgatattagagc 521
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aaattatagctcaagcttataatatttttgatgatattagagc 508
Score = 178 bits (90), Expect(5) = 0.0
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 41 tattcatttggtatgttagcgatattaggtccattcatatctacccttcaaactgaaagt 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30 tattcatttggtatgttagcgatattaggtccattcatatctacccttcaaactgaaagt 89
Query: 101 gatatattcttttgttttgctgcaatgatg 130
||||||||||||||||||||||||||||||
Sbjct: 90 gatatattcttttgttttgctgcaatgatg 119
Score = 36.2 bits (18), Expect(5) = 0.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 340 tgtctggtagattaggtt 357
||||||||||||||||||
Sbjct: 328 tgtctggtagattaggtt 345
Score = 32.2 bits (16), Expect(5) = 0.0
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 10 cttacaataatnataataa 28
||||||||||| |||||||
Sbjct: 1 cttacaataattataataa 19
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 668,944,639
Number of extensions: 45291365
Number of successful extensions: 3857428
Number of sequences better than 10.0: 75
Length of query: 579
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 556
Effective length of database: 93,106,754,628
Effective search space: 51767355573168
Effective search space used: 51767355573168
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.23 |
| Homology vs Protein |
Query= Contig-U07057-1 (Contig-U07057-1Q) /CSM_Contig/Contig-U07057-1Q.Seq.d
(579 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE017341_281(AE017341|pid:none) Cryptococcus neoformans var. neo... 56 6e-07
BC060066_1(BC060066|pid:none) Mus musculus TBC1 domain family, m... 55 1e-06
(Q9NU19) RecName: Full=TBC1 domain family member 22B; &AB449909... 54 3e-06
BC142187_1(BC142187|pid:none) Bos taurus TBC1 domain family, mem... 54 3e-06
AY129013_1(AY129013|pid:none) Homo sapiens clone FP17814 unknown... 54 3e-06
AK300007_1(AK300007|pid:none) Homo sapiens cDNA FLJ55654 complet... 54 3e-06
BC002720_1(BC002720|pid:none) Homo sapiens TBC1 domain family, m... 54 3e-06
(Q9HA65) RecName: Full=TBC1 domain family member 17; &AK022230_... 54 3e-06
CR855616_1(CR855616|pid:none) Xenopus tropicalis finished cDNA, ... 53 5e-06
BC001292_1(BC001292|pid:none) Homo sapiens TBC1 domain family, m... 53 7e-06
CR860928_1(CR860928|pid:none) Pongo abelii mRNA; cDNA DKFZp469F1... 53 7e-06
AL023733_2(AL023733|pid:none) Human DNA sequence from clone SC22... 53 7e-06
AK301445_1(AK301445|pid:none) Homo sapiens cDNA FLJ57214 complet... 53 7e-06
AK127653_1(AK127653|pid:none) Homo sapiens cDNA FLJ45751 fis, cl... 53 7e-06
(Q95KI1) RecName: Full=TBC1 domain family member 22A; Flags: Fra... 53 7e-06
AB060857_1(AB060857|pid:none) Macaca fascicularis brain cDNA clo... 53 7e-06
AK154226_1(AK154226|pid:none) Mus musculus NOD-derived CD11c +ve... 52 2e-05
(Q8R5A6) RecName: Full=TBC1 domain family member 22A; &AK039627... 52 2e-05
BC023106_1(BC023106|pid:none) Mus musculus TBC1 domain family, m... 52 2e-05
BC151508_1(BC151508|pid:none) Bos taurus TBC1 domain family, mem... 51 2e-05
AK055591_1(AK055591|pid:none) Homo sapiens cDNA FLJ31029 fis, cl... 51 2e-05
BC125999_1(BC125999|pid:none) Xenopus laevis hypothetical protei... 50 3e-05
AE014297_3040(AE014297|pid:none) Drosophila melanogaster chromos... 50 6e-05
AY577002_1(AY577002|pid:none) Danio rerio clone RZ150A4A11 C22or... 49 7e-05
Z81074_9(Z81074|pid:none) Caenorhabditis elegans Cosmid F32B6, c... 49 1e-04
(Q8BYH7) RecName: Full=TBC1 domain family member 17; &AK039566_... 49 1e-04
AK046883_1(AK046883|pid:none) Mus musculus 10 days neonate medul... 49 1e-04
BC017607_1(BC017607|pid:none) Mus musculus TBC1 domain family, m... 49 1e-04
T21643(T21643) hypothetical protein F32B6.8 - Caenorhabditis ele... 49 1e-04
AK153732_1(AK153732|pid:none) Mus musculus 3 days neonate thymus... 49 1e-04
(Q6NRC7) RecName: Full=TBC1 domain family member 23; &BC070830_... 48 2e-04
AY136478_1(AY136478|pid:none) Arabidopsis thaliana plant adhesio... 48 2e-04
AK123828_1(AK123828|pid:none) Homo sapiens cDNA FLJ41834 fis, cl... 48 2e-04
BT038351_1(BT038351|pid:none) Zea mays full-length cDNA clone ZM... 48 2e-04
BC096446_1(BC096446|pid:none) Mus musculus TBC1 domain family, m... 48 2e-04
BC099760_1(BC099760|pid:none) Rattus norvegicus TBC1 domain fami... 48 2e-04
(Q8CGA2) RecName: Full=TBC1 domain family member 14; 48 2e-04
BC011420_1(BC011420|pid:none) Mus musculus TBC1 domain family, m... 48 2e-04
BC143010_1(BC143010|pid:none) Synthetic construct Homo sapiens c... 48 2e-04
BT084174_1(BT084174|pid:none) Zea mays full-length cDNA clone ZM... 48 2e-04
BC042515_1(BC042515|pid:none) Mus musculus TBC1 domain family, m... 48 2e-04
AB108668_1(AB108668|pid:none) Rattus norvegicus UR-NR#2 mRNA for... 48 2e-04
AK295183_1(AK295183|pid:none) Homo sapiens cDNA FLJ54808 complet... 48 2e-04
AB117752_1(AB117752|pid:none) Rattus norvegicus SRF-2 mRNA for h... 48 2e-04
(Q8K0F1) RecName: Full=TBC1 domain family member 23; &AK155142_... 48 2e-04
AB093293_1(AB093293|pid:none) Mus musculus mRNA for mKIAA1322 pr... 48 2e-04
AB064521_1(AB064521|pid:none) Mus musculus mRNA for KIAA1322, co... 48 2e-04
BC136509_1(BC136509|pid:none) Homo sapiens TBC1 domain family, m... 48 2e-04
(Q5F415) RecName: Full=TBC1 domain family member 23; &AJ851485_... 47 3e-04
AB384176_1(AB384176|pid:none) Synthetic construct DNA, clone: pF... 47 4e-04
AL833868_1(AL833868|pid:none) Homo sapiens mRNA; cDNA DKFZp434K1... 47 4e-04
AK295068_1(AK295068|pid:none) Homo sapiens cDNA FLJ55205 complet... 47 4e-04
CP001142_382(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 47 4e-04
(Q9P2M4) RecName: Full=TBC1 domain family member 14; 47 4e-04
BC160725_1(BC160725|pid:none) Xenopus laevis hypothetical protei... 47 5e-04
AL109820_17(AL109820|pid:none) S.pombe chromosome I cosmid c1952... 47 5e-04
DQ415922_30(DQ415922|pid:none) Cleome spinosa clone BAC Cs1, com... 47 5e-04
BC000291_1(BC000291|pid:none) Homo sapiens TBC1 domain family, m... 47 5e-04
CU928181_330(CU928181|pid:none) Zygosaccharomyces rouxii strain ... 47 5e-04
AB173992_1(AB173992|pid:none) Macaca fascicularis brain cDNA clo... 46 6e-04
BC066727_1(BC066727|pid:none) Danio rerio zgc:110443, mRNA (cDNA... 46 6e-04
FN357586_12(FN357586|pid:none) Schistosoma mansoni genome sequen... 46 6e-04
CR382138_142(CR382138|pid:none) Debaryomyces hansenii strain CBS... 46 8e-04
CU928173_486(CU928173|pid:none) Zygosaccharomyces rouxii strain ... 46 8e-04
AB016884_9(AB016884|pid:none) Arabidopsis thaliana genomic DNA, ... 46 8e-04
AK230017_1(AK230017|pid:none) Arabidopsis thaliana mRNA for GTPa... 46 8e-04
AK099868_1(AK099868|pid:none) Oryza sativa Japonica Group cDNA c... 45 0.001
CR380958_448(CR380958|pid:none) Candida glabrata strain CBS138 c... 45 0.001
EF635009_1(EF635009|pid:none) Xenopus laevis spermatogenesis-rel... 45 0.001
AK172979_1(AK172979|pid:none) Mus musculus mRNA for mKIAA0608 pr... 45 0.002
AL049956_1(AL049956|pid:none) Homo sapiens mRNA; cDNA DKFZp564J2... 45 0.002
FN392319_221(FN392319|pid:none) Pichia pastoris GS115 chromosome... 45 0.002
CR382121_338(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 44 0.002
FN392319_1506(FN392319|pid:none) Pichia pastoris GS115 chromosom... 44 0.002
AL844504_66(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 44 0.002
BT052665_1(BT052665|pid:none) Medicago truncatula clone MTYFD_FE... 44 0.002
BC155093_1(BC155093|pid:none) Danio rerio zgc:171891, mRNA (cDNA... 44 0.003
BC121502_1(BC121502|pid:none) Xenopus tropicalis TBC1 domain fam... 44 0.003
AM502248_321(AM502248|pid:none) Leishmania infantum chromosome 30. 44 0.003
FN392319_257(FN392319|pid:none) Pichia pastoris GS115 chromosome... 44 0.003
AB025606_8(AB025606|pid:none) Arabidopsis thaliana genomic DNA, ... 44 0.004
AM910994_53(AM910994|pid:none) Plasmodium knowlesi strain H chro... 44 0.004
(Q08484) RecName: Full=GTPase-activating protein GYP1; AltName: ... 44 0.004
CR859635_1(CR859635|pid:none) Pongo abelii mRNA; cDNA DKFZp469C2... 43 0.005
FM992689_976(FM992689|pid:none) Candida dubliniensis CD36 chromo... 43 0.005
(Q7SXV1) RecName: Full=TBC1 domain family member 23; &BC055235_... 43 0.005
AB169470_1(AB169470|pid:none) Macaca fascicularis testis cDNA, c... 43 0.005
BC171406_1(BC171406|pid:none) Danio rerio TBC1 domain family, me... 43 0.005
CR382137_141(CR382137|pid:none) Debaryomyces hansenii strain CBS... 43 0.005
AM423639_1(AM423639|pid:none) Vitis vinifera contig VV78X038406.... 43 0.005
AK229325_1(AK229325|pid:none) Arabidopsis thaliana mRNA for GTPa... 43 0.007
EF146951_1(EF146951|pid:none) Populus trichocarpa clone WS01225_... 43 0.007
AK228688_1(AK228688|pid:none) Arabidopsis thaliana mRNA for puta... 43 0.007
AC021640_9(AC021640|pid:none) Arabidopsis thaliana chromosome II... 43 0.007
AC012329_5(AC012329|pid:none) Arabidopsis thaliana chromosome 1 ... 43 0.007
BX469917_3(BX469917|pid:none) Zebrafish DNA sequence from clone ... 42 0.009
BC095269_1(BC095269|pid:none) Danio rerio zgc:110443, mRNA (cDNA... 42 0.009
AM494964_217(AM494964|pid:none) Leishmania braziliensis chromoso... 42 0.009
AY058542_1(AY058542|pid:none) Drosophila melanogaster LD24460 fu... 42 0.009
AE014296_1575(AE014296|pid:none) Drosophila melanogaster chromos... 42 0.009
AC009259_7(AC009259|pid:none) Trypanosoma brucei chromosome 6 cl... 42 0.012
AM502245_169(AM502245|pid:none) Leishmania infantum chromosome 27. 42 0.012
AJ719378_1(AJ719378|pid:none) Gallus gallus partial mRNA for hyp... 42 0.012
AK221904_1(AK221904|pid:none) Arabidopsis thaliana mRNA for GTPa... 42 0.012
AY039546_1(AY039546|pid:none) Arabidopsis thaliana AT5g53570/MNC... 42 0.012
AB015476_10(AB015476|pid:none) Arabidopsis thaliana genomic DNA,... 42 0.012
CU928170_739(CU928170|pid:none) Kluyveromyces thermotolerans str... 42 0.012
CP000501_192(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 42 0.012
FN313631_1(FN313631|pid:none) Schistosoma japonicum isolate Anhu... 42 0.016
Z93394_7(Z93394|pid:none) Caenorhabditis elegans YAC Y48E1C, com... 42 0.016
AL138659_12(AL138659|pid:none) Arabidopsis thaliana DNA chromoso... 41 0.020
AK001750_1(AK001750|pid:none) Homo sapiens cDNA FLJ10888 fis, cl... 41 0.020
AK117388_1(AK117388|pid:none) Arabidopsis thaliana At3g59570 mRN... 41 0.020
AC146683_4(AC146683|pid:none) Medicago truncatula clone mth2-179... 41 0.027
(Q12344) RecName: Full=GTPase-activating protein GYP5; &S61015(... 41 0.027
AC146555_23(AC146555|pid:none) Medicago truncatula clone mth2-10... 41 0.027
AL035528_12(AL035528|pid:none) Arabidopsis thaliana DNA chromoso... 41 0.027
CT005263_92(CT005263|pid:none) Leishmania major strain Friedlin,... 41 0.027
CR382129_16(CR382129|pid:none) Yarrowia lipolytica strain CLIB12... 40 0.035
EF085333_1(EF085333|pid:none) Picea sitchensis clone WS02721_I04... 40 0.035
AE017351_212(AE017351|pid:none) Cryptococcus neoformans var. neo... 40 0.035
EF678414_1(EF678414|pid:none) Picea sitchensis clone WS0291_L01 ... 40 0.035
(Q755I4) RecName: Full=GTPase-activating protein GYP5; &AE01681... 40 0.045
AM494961_96(AM494961|pid:none) Leishmania braziliensis chromosom... 40 0.045
EU973247_1(EU973247|pid:none) Zea mays clone 395452 unknown mRNA. 40 0.045
Z68117_4(Z68117|pid:none) Caenorhabditis elegans Cosmid F45E6, c... 40 0.045
AK293521_1(AK293521|pid:none) Homo sapiens cDNA FLJ59474 complet... 40 0.059
AK297924_1(AK297924|pid:none) Homo sapiens cDNA FLJ53817 complet... 40 0.059
AK294776_1(AK294776|pid:none) Homo sapiens cDNA FLJ54460 complet... 40 0.059
AP004573_9(AP004573|pid:none) Oryza sativa Japonica Group genomi... 40 0.059
AK078145_1(AK078145|pid:none) Mus musculus adult male medulla ob... 40 0.059
BC128565_1(BC128565|pid:none) Mus musculus TBC1 domain family, m... 40 0.059
AB449912_1(AB449912|pid:none) Homo sapiens TBC1D25 mRNA for TBC1... 40 0.059
AK040932_1(AK040932|pid:none) Mus musculus adult male aorta and ... 40 0.059
BC161862_1(BC161862|pid:none) Rattus norvegicus TBC1 domain fami... 40 0.059
BC026050_1(BC026050|pid:none) Homo sapiens TBC1 domain family, m... 40 0.059
AC130798_4(AC130798|pid:none) Medicago truncatula clone mth2-27f... 39 0.077
AL844509_202(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 39 0.077
AP006852_322(AP006852|pid:none) Candida albicans genomic DNA, ch... 39 0.077
AL451022_12(AL451022|pid:none) Neurospora crassa DNA linkage gro... 39 0.077
AM502242_61(AM502242|pid:none) Leishmania infantum chromosome 24. 39 0.077
AK164899_1(AK164899|pid:none) Mus musculus 0 day neonate lung cD... 39 0.10
EU957547_1(EU957547|pid:none) Zea mays clone 1597118 TBC domain ... 39 0.10
AC115584_16(AC115584|pid:none) Dictyostelium discoideum chromoso... 39 0.13
AK071602_1(AK071602|pid:none) Oryza sativa Japonica Group cDNA c... 39 0.13
BT038102_1(BT038102|pid:none) Zea mays full-length cDNA clone ZM... 39 0.13
CU640366_1332(CU640366|pid:none) Podospora anserina genomic DNA ... 39 0.13
AM118080_127(AM118080|pid:none) Ustilago hordei mating type regi... 39 0.13
AL844508_72(AL844508|pid:none) Plasmodium falciparum 3D7 chromos... 38 0.17
CR382127_574(CR382127|pid:none) Yarrowia lipolytica strain CLIB1... 38 0.17
EF086695_1(EF086695|pid:none) Picea sitchensis clone WS02732_I13... 38 0.17
T16712(T16712)hypothetical protein R11B5.1 - Caenorhabditis eleg... 38 0.17
EU957246_1(EU957246|pid:none) Zea mays clone 1586973 unknown mRNA. 38 0.17
AK134294_1(AK134294|pid:none) Mus musculus 13 days embryo male t... 38 0.17
AK226930_1(AK226930|pid:none) Arabidopsis thaliana mRNA for hypo... 38 0.23
BT038472_1(BT038472|pid:none) Zea mays full-length cDNA clone ZM... 38 0.23
AL133332_1(AL133332|pid:none) Human DNA sequence from clone RP5-... 37 0.29
(O60447) RecName: Full=Ecotropic viral integration site 5 protei... 37 0.29
BT068086_1(BT068086|pid:none) Zea mays full-length cDNA clone ZM... 37 0.29
AF042345_1(AF042345|pid:none) Homo sapiens truncated EVI5 (EVI5)... 37 0.29
BT035400_1(BT035400|pid:none) Zea mays full-length cDNA clone ZM... 37 0.29
AM494967_281(AM494967|pid:none) Leishmania braziliensis chromoso... 37 0.38
AK072293_1(AK072293|pid:none) Oryza sativa Japonica Group cDNA c... 37 0.38
AC013483_23(AC013483|pid:none) Arabidopsis thaliana chromosome I... 37 0.38
AE014134_61(AE014134|pid:none) Drosophila melanogaster chromosom... 37 0.38
AK228869_1(AK228869|pid:none) Arabidopsis thaliana mRNA for puta... 37 0.38
AY084232_1(AY084232|pid:none) Arabidopsis thaliana clone 100460 ... 37 0.38
FN392321_344(FN392321|pid:none) Pichia pastoris GS115 chromosome... 37 0.38
AP007154_647(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 37 0.38
BC033574_1(BC033574|pid:none) Mus musculus TBC1D12: TBC1 domain ... 37 0.38
AM920437_803(AM920437|pid:none) Penicillium chrysogenum Wisconsi... 37 0.38
CR760585_1(CR760585|pid:none) Xenopus tropicalis finished cDNA, ... 37 0.50
AY142502_1(AY142502|pid:none) Arabidopsis thaliana unknown prote... 37 0.50
CR382136_684(CR382136|pid:none) Debaryomyces hansenii strain CBS... 37 0.50
BC159371_1(BC159371|pid:none) Xenopus tropicalis Novel protein s... 37 0.50
CR382132_522(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 37 0.50
BT036959_1(BT036959|pid:none) Zea mays full-length cDNA clone ZM... 37 0.50
AP008217_903(AP008217|pid:none) Oryza sativa (japonica cultivar-... 36 0.66
AC004809_18(AC004809|pid:none) Arabidopsis thaliana chromosome 1... 36 0.66
BT054291_1(BT054291|pid:none) Zea mays full-length cDNA clone ZM... 36 0.66
AE017351_95(AE017351|pid:none) Cryptococcus neoformans var. neof... 36 0.86
AK171591_1(AK171591|pid:none) Mus musculus B6-derived CD11 +ve d... 36 0.86
EU975359_1(EU975359|pid:none) Zea mays clone 488613 TBC1 domain ... 35 1.1
AL110485_2(AL110485|pid:none) Caenorhabditis elegans YAC Y46G5A,... 35 1.1
AL110485_3(AL110485|pid:none) Caenorhabditis elegans YAC Y46G5A,... 35 1.1
CP000472_341(CP000472|pid:none) Shewanella piezotolerans WP3, co... 35 1.5
BC090773_1(BC090773|pid:none) Danio rerio ecotropic viral integr... 35 1.5
AC159413_32(AC159413|pid:none) Trypanosoma brucei chromosome 7 c... 35 1.9
AL590450_170(AL590450|pid:none) chromosome XI of strain GB-M1 of... 35 1.9
AC002340_10(AC002340|pid:none) Arabidopsis thaliana chromosome 2... 35 1.9
G84711(G84711)hypothetical protein At2g30710 [imported] - Arabid... 35 1.9
FN357531_9(FN357531|pid:none) Schistosoma mansoni genome sequenc... 34 2.5
CR382138_120(CR382138|pid:none) Debaryomyces hansenii strain CBS... 34 2.5
(Q10496) RecName: Full=TBC domain-containing protein C26F1.09; ... 34 2.5
AM910994_321(AM910994|pid:none) Plasmodium knowlesi strain H chr... 34 2.5
(Q8TBP0) RecName: Full=TBC1 domain family member 16; &AB449902_... 34 2.5
(O59737) RecName: Full=GTPase-activating protein gyp1; AltName: ... 34 2.5
T19836(T19836)hypothetical protein C38H2.1 - Caenorhabditis eleg... 34 2.5
BC153970_1(BC153970|pid:none) Danio rerio hypothetical LOC566318... 34 3.3
AC084047_21(AC084047|pid:none) Trypanosoma brucei chromosome 6 c... 34 3.3
BC160813_1(BC160813|pid:none) Rattus norvegicus TBC1 domain fami... 34 3.3
BX538352_105(BX538352|pid:none) Cryptosporidium parvum chromosom... 34 3.3
AE014187_697(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 33 4.2
BC122032_1(BC122032|pid:none) Xenopus tropicalis hypothetical pr... 33 4.2
(Q9P7P2) RecName: Full=Meiosis-specific protein hop1; AltName: F... 33 4.2
BC157165_1(BC157165|pid:none) Xenopus tropicalis hypothetical pr... 33 4.2
BC167441_1(BC167441|pid:none) Danio rerio si:ch211-198d18.2, mRN... 33 4.2
CR380951_151(CR380951|pid:none) Candida glabrata strain CBS138 c... 33 4.2
FN392319_59(FN392319|pid:none) Pichia pastoris GS115 chromosome ... 33 4.2
BC168786_1(BC168786|pid:none) Xenopus tropicalis hypothetical pr... 33 4.2
AP008210_598(AP008210|pid:none) Oryza sativa (japonica cultivar-... 33 4.2
AL935165_5(AL935165|pid:none) Zebrafish DNA sequence from clone ... 33 4.2
BC129516_1(BC129516|pid:none) Xenopus laevis hypothetical protei... 33 4.2
AK066076_1(AK066076|pid:none) Oryza sativa Japonica Group cDNA c... 33 4.2
BX649327_13(BX649327|pid:none) Zebrafish DNA sequence from clone... 33 4.2
BX284749_3(BX284749|pid:none) Neurospora crassa DNA linkage grou... 33 4.2
AK294955_1(AK294955|pid:none) Homo sapiens cDNA FLJ60111 complet... 33 5.5
AB275762_1(AB275762|pid:none) Homo sapiens SGSM2 mRNA for small ... 33 5.5
(Q96CN4) RecName: Full=EVI5-like protein; AltName: Full=Ecotropi... 33 5.5
AB007857_1(AB007857|pid:none) Homo sapiens mRNA for KIAA0397 pro... 33 5.5
BC142319_1(BC142319|pid:none) Bos taurus ecotropic viral integra... 33 5.5
AL807577_18(AL807577|pid:none) Aspergillus fumigatus BAC AFA12F2. 33 5.5
CS300705_1(CS300705|pid:none) Sequence 213 from Patent EP1661986. 33 5.5
AM270172_24(AM270172|pid:none) Aspergillus niger contig An08c017... 33 7.2
CU633900_297(CU633900|pid:none) Podospora anserina genomic DNA c... 33 7.2
AM429097_1(AM429097|pid:none) Vitis vinifera contig VV78X126805.... 33 7.2
DQ897500_1(DQ897500|pid:none) Caenorhabditis remanei strain CR10... 32 9.5
(Q9BXI6) RecName: Full=TBC1 domain family member 10A; AltName: F... 32 9.5
AK093231_1(AK093231|pid:none) Homo sapiens cDNA FLJ35912 fis, cl... 32 9.5
AK131086_1(AK131086|pid:none) Homo sapiens mRNA for FLJ00288 pro... 32 9.5
BC108645_1(BC108645|pid:none) Xenopus laevis hypothetical protei... 32 9.5
T29570(T29570)hypothetical protein T24D11.1 - Caenorhabditis ele... 32 9.5
BC150187_1(BC150187|pid:none) Homo sapiens TBC1 domain family, m... 32 9.5
BC143051_1(BC143051|pid:none) Synthetic construct Homo sapiens c... 32 9.5
U49940_1(U49940|pid:none) Caenorhabditis elegans cosmid T24D11, ... 32 9.5
>AE017341_281(AE017341|pid:none) Cryptococcus neoformans var.
neoformans JEC21 chromosome 1, complete sequence.
Length = 393
Score = 56.2 bits (134), Expect = 6e-07
Identities = 30/89 (33%), Positives = 49/89 (55%)
Frame = +2
Query: 71 PFISTLQTESDIFFCFAAMMKKIEENLQNESLTLKLSRFIMYFRSVLPELFSHFEEEEIN 250
PF+ L +F F ++M+++ L ++L+ F+ FR LPEL S+ E+E++
Sbjct: 239 PFVCCLSRPVGVFLGFKSLMERMRAF---PPLPVRLASFLTLFRQALPELHSYCEDEQVP 295
Query: 251 SNDWATSWIQNYLSCELPIECTLRLWDTY 337
A SW+ L+ E+ + LRLWDTY
Sbjct: 296 YVQVALSWMTTLLAKEMWLGDVLRLWDTY 324
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 595,459,928
Number of extensions: 9108603
Number of successful extensions: 21451
Number of sequences better than 10.0: 235
Number of HSP's gapped: 21394
Number of HSP's successfully gapped: 235
Length of query: 193
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 71
Effective length of database: 650,044,009
Effective search space: 46153124639
Effective search space used: 46153124639
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
1 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |