Contig-U00298-1 |
Contig ID |
Contig-U00298-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
387 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
443325 |
End point |
443637 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U00298 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.21 |
Homology vs CSM-cDNA |
|
dna update |
2009. 4.15 |
Homology vs DNA |
|
protein update |
2009. 7.10 |
Homology vs Protein |
Query= Contig-U00298-1 (Contig-U00298-1Q) /CSM_Contig/Contig-U00298-1Q.Seq.d (387 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
AJ720868_1(AJ720868|pid:none) Gallus gallus mRNA for hypothetica... 42 0.005 AM920431_984(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 40 0.033 AE014296_805(AE014296|pid:none) Drosophila melanogaster chromoso... 39 0.044 AE014296_806(AE014296|pid:none) Drosophila melanogaster chromoso... 39 0.044 AM269961_4(AM269961|pid:none) Aspergillus niger contig An01c0140... 39 0.044 AE014296_804(AE014296|pid:none) Drosophila melanogaster chromoso... 39 0.044 CP001407_472(CP001407|pid:none) Bacillus cereus 03BB102, complet... 39 0.057 AE017194_606(AE017194|pid:none) Bacillus cereus ATCC 10987, comp... 39 0.074 AP007155_730(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 38 0.13 CU633900_825(CU633900|pid:none) Podospora anserina genomic DNA c... 38 0.13 AC087553_6(AC087553|pid:none) Oryza sativa (japonica cultivar-gr... 38 0.13 AL844507_216(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.13 BC091939_1(BC091939|pid:none) Danio rerio si:ch211-103f16.1, mRN... 37 0.17 (O94294) RecName: Full=Leucine-rich repeat-containing protein so... 37 0.17 CU104762_1(CU104762|pid:none) Zebrafish DNA sequence from clone ... 37 0.17 BC167624_1(BC167624|pid:none) Xenopus tropicalis hypothetical pr... 37 0.22 (Q10303) RecName: Full=Cell polarity protein alp21; AltName: Ful... 37 0.28 (Q8CDN9) RecName: Full=Leucine-rich repeat-containing protein 9; 36 0.37 Z93322_1(Z93322|pid:none) H.sapiens mRNA; IMAGE cDNA clone 308937. 36 0.48 (O43822) RecName: Full=Uncharacterized protein C21orf2; AltName:... 36 0.48 BC080050_1(BC080050|pid:none) Xenopus laevis MGC83386 protein, m... 36 0.48 U84569_1(U84569|pid:none) Human YF5 mRNA, complete cds. 36 0.48 U84570_1(U84570|pid:none) Human A2 mRNA, complete cds. 36 0.48 BC031300_1(BC031300|pid:none) Homo sapiens chromosome 21 open re... 36 0.48 DQ017481_1(DQ017481|pid:none) Plasmodium falciparum leucine-rich... 35 0.63 AM473355_1(AM473355|pid:none) Vitis vinifera contig VV78X150320.... 35 0.82 AE016877_462(AE016877|pid:none) Bacillus cereus ATCC 14579, comp... 34 1.4 AF082516_1(AF082516|pid:none) Homo sapiens I-1 receptor candidat... 34 1.4 BC056900_1(BC056900|pid:none) Homo sapiens nischarin, mRNA (cDNA... 34 1.4 (Q9Y2I1) RecName: Full=Nischarin; AltName: Full=Imidazoline rece... 34 1.4 AE014074_1035(AE014074|pid:none) Streptococcus pyogenes MGAS315,... 34 1.4 BC038102_1(BC038102|pid:none) Homo sapiens nischarin, mRNA (cDNA... 34 1.4 CP001186_465(CP001186|pid:none) Bacillus cereus G9842, complete ... 34 1.4 AB384069_1(AB384069|pid:none) Synthetic construct DNA, clone: pF... 34 1.4 CP000261_1171(CP000261|pid:none) Streptococcus pyogenes MGAS2096... 34 1.8 AK075794_1(AK075794|pid:none) Mus musculus 10 day old male pancr... 34 1.8 CP000259_1152(CP000259|pid:none) Streptococcus pyogenes MGAS9429... 34 1.8 (Q15435) RecName: Full=Protein phosphatase 1 regulatory subunit ... 34 1.8 CP000260_1179(CP000260|pid:none) Streptococcus pyogenes MGAS1027... 34 1.8 CP000262_1208(CP000262|pid:none) Streptococcus pyogenes MGAS1075... 34 1.8 AE009949_1132(AE009949|pid:none) Streptococcus pyogenes MGAS8232... 34 1.8 AF067136_2(AF067136|pid:none) Homo sapiens protein phosphatase-1... 34 1.8 AK004032_1(AK004032|pid:none) Mus musculus 18-day embryo whole b... 34 1.8 AF067134_1(AF067134|pid:none) Homo sapiens protein phosphatase-1... 34 1.8 AE004092_1043(AE004092|pid:none) Streptococcus pyogenes M1 GAS, ... 34 1.8 AJ878915_1(AJ878915|pid:none) Oncorhynchus mykiss mRNA for Toll-... 34 1.8 (P58797) RecName: Full=Nuclear RNA export factor 1; AltName: Ful... 34 1.8 BC085944_1(BC085944|pid:none) Rattus norvegicus similar to RIKEN... 33 2.4 (Q28CU0) RecName: Full=Leucine-rich repeat-containing protein 23... 33 2.4 FN392320_673(FN392320|pid:none) Pichia pastoris GS115 chromosome... 33 2.4 CP001357_1883(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 33 2.4 FN357369_80(FN357369|pid:none) Schistosoma mansoni genome sequen... 33 3.1 CP001344_1829(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 33 3.1 AE014134_709(AE014134|pid:none) Drosophila melanogaster chromoso... 33 3.1 AE014134_708(AE014134|pid:none) Drosophila melanogaster chromoso... 33 3.1 AB019230_14(AB019230|pid:none) Arabidopsis thaliana genomic DNA,... 33 3.1 (Q3UM45) RecName: Full=Protein phosphatase 1 regulatory subunit ... 33 3.1 AL766848_4(AL766848|pid:none) Streptococcus agalactiae NEM316 co... 33 4.1 AF486853_1(AF486853|pid:none) Arabidopsis thaliana tubulin foldi... 33 4.1 DQ242614_1(DQ242614|pid:none) Streptococcus agalactiae Blr (blr)... 33 4.1 AE009948_885(AE009948|pid:none) Streptococcus agalactiae 2603V/R... 33 4.1 CP000114_918(CP000114|pid:none) Streptococcus agalactiae A909, c... 33 4.1 AC016163_17(AC016163|pid:none) Arabidopsis thaliana chromosome 1... 33 4.1 AK118835_1(AK118835|pid:none) Arabidopsis thaliana At1g71440 mRN... 33 4.1 AE017343_351(AE017343|pid:none) Cryptococcus neoformans var. neo... 33 4.1 S44798(S44798)F09G8.5 protein - Caenorhabditis elegans 32 5.3 (P34390) RecName: Full=Uncharacterized protein F09G8.5; 32 5.3 BC144980_1(BC144980|pid:none) Mus musculus nischarin, mRNA (cDNA... 32 5.3 AC083835_6(AC083835|pid:none) Arabidopsis thaliana chromosome 1 ... 32 5.3 AE015927_407(AE015927|pid:none) Clostridium tetani E88, complete... 32 5.3 AM233509_1(AM233509|pid:none) Salmo salar tlr gene for Toll-like... 32 5.3 AF315344_1(AF315344|pid:none) Mus musculus nischarin mRNA, compl... 32 5.3 BC088688_1(BC088688|pid:none) Xenopus laevis hypothetical LOC496... 32 5.3 Z81035_9(Z81035|pid:none) Caenorhabditis elegans Cosmid C15H11, ... 32 5.3 BC108364_1(BC108364|pid:none) Mus musculus nischarin, mRNA (cDNA... 32 5.3 AM502252_297(AM502252|pid:none) Leishmania infantum chromosome 34. 32 5.3 AK004628_1(AK004628|pid:none) Mus musculus adult male lung cDNA,... 32 5.3 L11247_1(L11247|pid:none) Caenorhabditis elegans cosmid F09G8, c... 32 5.3 DQ184950_1(DQ184950|pid:none) Malus x domestica putative recepto... 32 7.0 EF426479_1(EF426479|pid:none) Sus scrofa domestica toll-like rec... 32 7.0 DQ647699_1(DQ647699|pid:none) Sus scrofa Toll-like receptor 7 mR... 32 7.0 DQ333222_1(DQ333222|pid:none) Sus scrofa toll-like receptor 7 (T... 32 7.0 AB291813_1(AB291813|pid:none) Sus scrofa TLR7, TLR8, TMSB4X gene... 32 7.0 AE014297_4204(AE014297|pid:none) Drosophila melanogaster chromos... 32 7.0 AE014297_1686(AE014297|pid:none) Drosophila melanogaster chromos... 32 7.0 BC095832_1(BC095832|pid:none) Danio rerio hypothetical protein L... 32 7.0 CT005271_360(CT005271|pid:none) Leishmania major strain Friedlin... 32 7.0 BC070656_1(BC070656|pid:none) Xenopus laevis hypothetical protei... 32 9.1 (Q6UXM1) RecName: Full=Leucine-rich repeats and immunoglobulin-l... 32 9.1 AE015927_406(AE015927|pid:none) Clostridium tetani E88, complete... 32 9.1 AM494957_303(AM494957|pid:none) Leishmania braziliensis chromoso... 32 9.1 AK301162_1(AK301162|pid:none) Homo sapiens cDNA FLJ57615 complet... 32 9.1 (Q5HZV9) RecName: Full=Protein phosphatase 1 regulatory subunit ... 32 9.1 AK292857_1(AK292857|pid:none) Homo sapiens cDNA FLJ76477 complet... 32 9.1
>AJ720868_1(AJ720868|pid:none) Gallus gallus mRNA for hypothetical protein, clone 28g13. Length = 254
Score = 42.4 bits (98), Expect = 0.005 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = +1
Query: 1 VESLNRLYALECLDISKNNIKDIQEIFKLNTLPNLQYLFIDENPFC 138 +E LN+ L L + KNNI + E+F L LP L+ L++ ENP C Sbjct: 55 LEPLNQCQNLSELYLRKNNIASLNELFYLKNLPRLRVLWLSENPCC 100
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 342,891,417 Number of extensions: 3974508 Number of successful extensions: 7776 Number of sequences better than 10.0: 94 Number of HSP's gapped: 7766 Number of HSP's successfully gapped: 95 Length of query: 129 Length of database: 1,051,180,864 Length adjustment: 94 Effective length of query: 35 Effective length of database: 746,944,318 Effective search space: 26143051130 Effective search space used: 26143051130 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 29 (15.8 bits)
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |