| Contig-U00298-1 |
| Contig ID |
Contig-U00298-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
387 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
443325 |
| End point |
443637 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
2 |
| Number of EST |
2 |
| Link to clone list |
U00298 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.21 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 4.15 |
| Homology vs DNA |
|
| protein update |
2009. 7.10 |
| Homology vs Protein |
Query= Contig-U00298-1 (Contig-U00298-1Q) /CSM_Contig/Contig-U00298-1Q.Seq.d
(387 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ720868_1(AJ720868|pid:none) Gallus gallus mRNA for hypothetica... 42 0.005
AM920431_984(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 40 0.033
AE014296_805(AE014296|pid:none) Drosophila melanogaster chromoso... 39 0.044
AE014296_806(AE014296|pid:none) Drosophila melanogaster chromoso... 39 0.044
AM269961_4(AM269961|pid:none) Aspergillus niger contig An01c0140... 39 0.044
AE014296_804(AE014296|pid:none) Drosophila melanogaster chromoso... 39 0.044
CP001407_472(CP001407|pid:none) Bacillus cereus 03BB102, complet... 39 0.057
AE017194_606(AE017194|pid:none) Bacillus cereus ATCC 10987, comp... 39 0.074
AP007155_730(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 38 0.13
CU633900_825(CU633900|pid:none) Podospora anserina genomic DNA c... 38 0.13
AC087553_6(AC087553|pid:none) Oryza sativa (japonica cultivar-gr... 38 0.13
AL844507_216(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.13
BC091939_1(BC091939|pid:none) Danio rerio si:ch211-103f16.1, mRN... 37 0.17
(O94294) RecName: Full=Leucine-rich repeat-containing protein so... 37 0.17
CU104762_1(CU104762|pid:none) Zebrafish DNA sequence from clone ... 37 0.17
BC167624_1(BC167624|pid:none) Xenopus tropicalis hypothetical pr... 37 0.22
(Q10303) RecName: Full=Cell polarity protein alp21; AltName: Ful... 37 0.28
(Q8CDN9) RecName: Full=Leucine-rich repeat-containing protein 9; 36 0.37
Z93322_1(Z93322|pid:none) H.sapiens mRNA; IMAGE cDNA clone 308937. 36 0.48
(O43822) RecName: Full=Uncharacterized protein C21orf2; AltName:... 36 0.48
BC080050_1(BC080050|pid:none) Xenopus laevis MGC83386 protein, m... 36 0.48
U84569_1(U84569|pid:none) Human YF5 mRNA, complete cds. 36 0.48
U84570_1(U84570|pid:none) Human A2 mRNA, complete cds. 36 0.48
BC031300_1(BC031300|pid:none) Homo sapiens chromosome 21 open re... 36 0.48
DQ017481_1(DQ017481|pid:none) Plasmodium falciparum leucine-rich... 35 0.63
AM473355_1(AM473355|pid:none) Vitis vinifera contig VV78X150320.... 35 0.82
AE016877_462(AE016877|pid:none) Bacillus cereus ATCC 14579, comp... 34 1.4
AF082516_1(AF082516|pid:none) Homo sapiens I-1 receptor candidat... 34 1.4
BC056900_1(BC056900|pid:none) Homo sapiens nischarin, mRNA (cDNA... 34 1.4
(Q9Y2I1) RecName: Full=Nischarin; AltName: Full=Imidazoline rece... 34 1.4
AE014074_1035(AE014074|pid:none) Streptococcus pyogenes MGAS315,... 34 1.4
BC038102_1(BC038102|pid:none) Homo sapiens nischarin, mRNA (cDNA... 34 1.4
CP001186_465(CP001186|pid:none) Bacillus cereus G9842, complete ... 34 1.4
AB384069_1(AB384069|pid:none) Synthetic construct DNA, clone: pF... 34 1.4
CP000261_1171(CP000261|pid:none) Streptococcus pyogenes MGAS2096... 34 1.8
AK075794_1(AK075794|pid:none) Mus musculus 10 day old male pancr... 34 1.8
CP000259_1152(CP000259|pid:none) Streptococcus pyogenes MGAS9429... 34 1.8
(Q15435) RecName: Full=Protein phosphatase 1 regulatory subunit ... 34 1.8
CP000260_1179(CP000260|pid:none) Streptococcus pyogenes MGAS1027... 34 1.8
CP000262_1208(CP000262|pid:none) Streptococcus pyogenes MGAS1075... 34 1.8
AE009949_1132(AE009949|pid:none) Streptococcus pyogenes MGAS8232... 34 1.8
AF067136_2(AF067136|pid:none) Homo sapiens protein phosphatase-1... 34 1.8
AK004032_1(AK004032|pid:none) Mus musculus 18-day embryo whole b... 34 1.8
AF067134_1(AF067134|pid:none) Homo sapiens protein phosphatase-1... 34 1.8
AE004092_1043(AE004092|pid:none) Streptococcus pyogenes M1 GAS, ... 34 1.8
AJ878915_1(AJ878915|pid:none) Oncorhynchus mykiss mRNA for Toll-... 34 1.8
(P58797) RecName: Full=Nuclear RNA export factor 1; AltName: Ful... 34 1.8
BC085944_1(BC085944|pid:none) Rattus norvegicus similar to RIKEN... 33 2.4
(Q28CU0) RecName: Full=Leucine-rich repeat-containing protein 23... 33 2.4
FN392320_673(FN392320|pid:none) Pichia pastoris GS115 chromosome... 33 2.4
CP001357_1883(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 33 2.4
FN357369_80(FN357369|pid:none) Schistosoma mansoni genome sequen... 33 3.1
CP001344_1829(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 33 3.1
AE014134_709(AE014134|pid:none) Drosophila melanogaster chromoso... 33 3.1
AE014134_708(AE014134|pid:none) Drosophila melanogaster chromoso... 33 3.1
AB019230_14(AB019230|pid:none) Arabidopsis thaliana genomic DNA,... 33 3.1
(Q3UM45) RecName: Full=Protein phosphatase 1 regulatory subunit ... 33 3.1
AL766848_4(AL766848|pid:none) Streptococcus agalactiae NEM316 co... 33 4.1
AF486853_1(AF486853|pid:none) Arabidopsis thaliana tubulin foldi... 33 4.1
DQ242614_1(DQ242614|pid:none) Streptococcus agalactiae Blr (blr)... 33 4.1
AE009948_885(AE009948|pid:none) Streptococcus agalactiae 2603V/R... 33 4.1
CP000114_918(CP000114|pid:none) Streptococcus agalactiae A909, c... 33 4.1
AC016163_17(AC016163|pid:none) Arabidopsis thaliana chromosome 1... 33 4.1
AK118835_1(AK118835|pid:none) Arabidopsis thaliana At1g71440 mRN... 33 4.1
AE017343_351(AE017343|pid:none) Cryptococcus neoformans var. neo... 33 4.1
S44798(S44798)F09G8.5 protein - Caenorhabditis elegans 32 5.3
(P34390) RecName: Full=Uncharacterized protein F09G8.5; 32 5.3
BC144980_1(BC144980|pid:none) Mus musculus nischarin, mRNA (cDNA... 32 5.3
AC083835_6(AC083835|pid:none) Arabidopsis thaliana chromosome 1 ... 32 5.3
AE015927_407(AE015927|pid:none) Clostridium tetani E88, complete... 32 5.3
AM233509_1(AM233509|pid:none) Salmo salar tlr gene for Toll-like... 32 5.3
AF315344_1(AF315344|pid:none) Mus musculus nischarin mRNA, compl... 32 5.3
BC088688_1(BC088688|pid:none) Xenopus laevis hypothetical LOC496... 32 5.3
Z81035_9(Z81035|pid:none) Caenorhabditis elegans Cosmid C15H11, ... 32 5.3
BC108364_1(BC108364|pid:none) Mus musculus nischarin, mRNA (cDNA... 32 5.3
AM502252_297(AM502252|pid:none) Leishmania infantum chromosome 34. 32 5.3
AK004628_1(AK004628|pid:none) Mus musculus adult male lung cDNA,... 32 5.3
L11247_1(L11247|pid:none) Caenorhabditis elegans cosmid F09G8, c... 32 5.3
DQ184950_1(DQ184950|pid:none) Malus x domestica putative recepto... 32 7.0
EF426479_1(EF426479|pid:none) Sus scrofa domestica toll-like rec... 32 7.0
DQ647699_1(DQ647699|pid:none) Sus scrofa Toll-like receptor 7 mR... 32 7.0
DQ333222_1(DQ333222|pid:none) Sus scrofa toll-like receptor 7 (T... 32 7.0
AB291813_1(AB291813|pid:none) Sus scrofa TLR7, TLR8, TMSB4X gene... 32 7.0
AE014297_4204(AE014297|pid:none) Drosophila melanogaster chromos... 32 7.0
AE014297_1686(AE014297|pid:none) Drosophila melanogaster chromos... 32 7.0
BC095832_1(BC095832|pid:none) Danio rerio hypothetical protein L... 32 7.0
CT005271_360(CT005271|pid:none) Leishmania major strain Friedlin... 32 7.0
BC070656_1(BC070656|pid:none) Xenopus laevis hypothetical protei... 32 9.1
(Q6UXM1) RecName: Full=Leucine-rich repeats and immunoglobulin-l... 32 9.1
AE015927_406(AE015927|pid:none) Clostridium tetani E88, complete... 32 9.1
AM494957_303(AM494957|pid:none) Leishmania braziliensis chromoso... 32 9.1
AK301162_1(AK301162|pid:none) Homo sapiens cDNA FLJ57615 complet... 32 9.1
(Q5HZV9) RecName: Full=Protein phosphatase 1 regulatory subunit ... 32 9.1
AK292857_1(AK292857|pid:none) Homo sapiens cDNA FLJ76477 complet... 32 9.1
>AJ720868_1(AJ720868|pid:none) Gallus gallus mRNA for hypothetical
protein, clone 28g13.
Length = 254
Score = 42.4 bits (98), Expect = 0.005
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +1
Query: 1 VESLNRLYALECLDISKNNIKDIQEIFKLNTLPNLQYLFIDENPFC 138
+E LN+ L L + KNNI + E+F L LP L+ L++ ENP C
Sbjct: 55 LEPLNQCQNLSELYLRKNNIASLNELFYLKNLPRLRVLWLSENPCC 100
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 342,891,417
Number of extensions: 3974508
Number of successful extensions: 7776
Number of sequences better than 10.0: 94
Number of HSP's gapped: 7766
Number of HSP's successfully gapped: 95
Length of query: 129
Length of database: 1,051,180,864
Length adjustment: 94
Effective length of query: 35
Effective length of database: 746,944,318
Effective search space: 26143051130
Effective search space used: 26143051130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
1 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |