Contig-U07017-1
Contig ID Contig-U07017-1
Contig update 2001. 8.30
Contig sequence
>Contig-U07017-1 (Contig-U07017-1Q) /CSM_Contig/Contig-U07017-1Q.Seq.d
AAATAAACAAAATAATAATAAAATGTCAGACGATGAACATGTTATAAACT
TTTATAGACCAAACGAGATTCCATATGGCCCATTTTCAAATTTCTCTCGT
CATACTGTTTTTTATAATAATGTTTTGGCAAAAACATCAGAACACATTTT
TCAGGCTATGAAATTCGAAGGCACACAACATTTTAATGATGTTTTAAACA
CCAAAACCCCTGGTGATAGTGCTAAAATGGGTAGAGATCGTAAACGTCCA
TTGAGAAAAGATTGGGAAGGTGTTAAAGATGAACTCATGTATGAAATTTG
TTTAGCAAAATTCTCTCAACATAAAGATATTCAAAAAATTTTATTAGAAA
CAGGTGACGCCACACTTGTCGAACATACTGGAAATGATAGTTATTGGGGT
GATGGTGGTGATGGTTCAGGTAGAAATCAATTAGGTAAAACTTTAATGAG
AGTCAGAGAAACAATTAAAAATAATATCAAAAATTAGATATATTGTAAAA
AAAAAAATAAAAAAATAAAAAAATTAAAAAAAATAAAAATTAATAA

Gap no gap
Contig length 546
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1311386
End point 1310840
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U07017
List of clone(s)

est1=VSJ576E,1,547
Translated Amino Acid sequence
NKQNNNKMSDDEHVINFYRPNEIPYGPFSNFSRHTVFYNNVLAKTSEHIFQAMKFEGTQH
FNDVLNTKTPGDSAKMGRDRKRPLRKDWEGVKDELMYEICLAKFSQHKDIQKILLETGDA
TLVEHTGNDSYWGDGGDGSGRNQLGKTLMRVRETIKNNIKN*iyckkknkkikklkkiki
n


Translated Amino Acid sequence (All Frames)
Frame A:
k*tk***nvrr*tcykll*tkrdsiwpifkflssycfl**cfgknirthfsgyeirrhtt
f**cfkhqnpw**c*ng*rs*tsiekrlgrc*r*thv*nlfskilst*rysknfirnr*r
htcrtywk**llg*ww*wfr*ksir*nfnesqrnn*k*yqkldil*kkk*knkkikknkn
**


Frame B:
NKQNNNKMSDDEHVINFYRPNEIPYGPFSNFSRHTVFYNNVLAKTSEHIFQAMKFEGTQH
FNDVLNTKTPGDSAKMGRDRKRPLRKDWEGVKDELMYEICLAKFSQHKDIQKILLETGDA
TLVEHTGNDSYWGDGGDGSGRNQLGKTLMRVRETIKNNIKN*iyckkknkkikklkkiki
n


Frame C:
inkiiikcqtmnml*tfidqtrfhmahfqislvilffiimfwqkhqntffrl*nskahni
lmmf*tpkplvivlkwveivnvh*ekigkvlkmnscmkfv*qnslnikifkkfy*kqvtp
hlsnilemivigvmvvmvqvein*vkl**esekqlkiiskiryivkkkikk*kn*kk*kl
i


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U07017-1 (Contig-U07017-1Q)
/CSM_Contig/Contig-U07017-1Q.Seq.d
(546 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U07017-1 (Contig-U07017-1Q) /CSM_Contig/Conti... 983 0.0
Contig-U12426-1 (Contig-U12426-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U12474-1 (Contig-U12474-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U09331-1 (Contig-U09331-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U05189-1 (Contig-U05189-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U04515-1 (Contig-U04515-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U04380-1 (Contig-U04380-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U03642-1 (Contig-U03642-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U14296-1 (Contig-U14296-1Q) /CSM_Contig/Conti... 38 0.010
Contig-U12404-1 (Contig-U12404-1Q) /CSM_Contig/Conti... 38 0.010

>Contig-U07017-1 (Contig-U07017-1Q) /CSM_Contig/Contig-U07017-1Q.Seq.d
Length = 546

Score = 983 bits (496), Expect = 0.0
Identities = 496/496 (100%)
Strand = Plus / Plus


Query: 1 aaataaacaaaataataataaaatgtcagacgatgaacatgttataaacttttatagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaataaacaaaataataataaaatgtcagacgatgaacatgttataaacttttatagacc 60


Query: 61 aaacgagattccatatggcccattttcaaatttctctcgtcatactgttttttataataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaacgagattccatatggcccattttcaaatttctctcgtcatactgttttttataataa 120


Query: 121 tgttttggcaaaaacatcagaacacatttttcaggctatgaaattcgaaggcacacaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgttttggcaaaaacatcagaacacatttttcaggctatgaaattcgaaggcacacaaca 180


Query: 181 ttttaatgatgttttaaacaccaaaacccctggtgatagtgctaaaatgggtagagatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttaatgatgttttaaacaccaaaacccctggtgatagtgctaaaatgggtagagatcg 240


Query: 241 taaacgtccattgagaaaagattgggaaggtgttaaagatgaactcatgtatgaaatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaacgtccattgagaaaagattgggaaggtgttaaagatgaactcatgtatgaaatttg 300


Query: 301 tttagcaaaattctctcaacataaagatattcaaaaaattttattagaaacaggtgacgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttagcaaaattctctcaacataaagatattcaaaaaattttattagaaacaggtgacgc 360


Query: 361 cacacttgtcgaacatactggaaatgatagttattggggtgatggtggtgatggttcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cacacttgtcgaacatactggaaatgatagttattggggtgatggtggtgatggttcagg 420


Query: 421 tagaaatcaattaggtaaaactttaatgagagtcagagaaacaattaaaaataatatcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagaaatcaattaggtaaaactttaatgagagtcagagaaacaattaaaaataatatcaa 480


Query: 481 aaattagatatattgt 496
||||||||||||||||
Sbjct: 481 aaattagatatattgt 496


>Contig-U12426-1 (Contig-U12426-1Q) /CSM_Contig/Contig-U12426-1Q.Seq.d
Length = 1761

Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1 aaataaacaaaataataataa 21
|||||||||||||||||||||
Sbjct: 1666 aaataaacaaaataataataa 1686


>Contig-U12474-1 (Contig-U12474-1Q) /CSM_Contig/Contig-U12474-1Q.Seq.d
Length = 1117

Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 5 aaacaaaataataataaaat 24
||||||||||||||||||||
Sbjct: 145 aaacaaaataataataaaat 164


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,242
Number of Sequences: 6905
Number of extensions: 21242
Number of successful extensions: 2813
Number of sequences better than 10.0: 836
length of query: 546
length of database: 5,674,871
effective HSP length: 16
effective length of query: 530
effective length of database: 5,564,391
effective search space: 2949127230
effective search space used: 2949127230
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.11
Homology vs DNA
Query= Contig-U07017-1 (Contig-U07017-1Q) /CSM_Contig/Contig-U07017-1Q.Seq.d
(546 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU270139) Dictyostelium discoideum vegetative cDNA clone:VS... 803 0.0 1
(AU270140) Dictyostelium discoideum vegetative cDNA clone:VS... 747 0.0 1
(C84125) Dictyostelium discoideum slug cDNA, clone SSC829. 40 0.002 3
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 40 0.003 7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 0.016 8
(BX284621) Zebrafish DNA sequence from clone CH211-207N6. 50 0.016 5
(AC225595) Homo sapiens FOSMID clone ABC14-50997500E11 from ... 44 0.030 2
(EK191986) 1095460022071 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.055 3
(AP005140) Homo sapiens genomic DNA, chromosome 11 clone:CMB... 44 0.080 2
(CR932440) Zebrafish DNA sequence from clone CH211-247J17 in... 50 0.083 1
(CR450739) Zebrafish DNA sequence from clone DKEY-175B17 in ... 50 0.083 1
(AL935288) Zebrafish DNA sequence from clone CH211-250C4. 50 0.083 1
(CU234141) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.083 1
(CT573411) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.083 1
(AF087656) Agrocybe aegerita large subunit ribosomal RNA gen... 38 0.093 4
(CR848052) Zebrafish DNA sequence from clone DKEY-28F6 in li... 44 0.11 3
(AC191385) Pan troglodytes chromosome 11 clone CH251-510M10,... 44 0.12 2
(CU302401) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.13 4
(AZ625244) 1M0464F05R Mouse 10kb plasmid UUGC1M library Mus ... 40 0.13 2
(AC231672) Solanum tuberosum chromosome 11 clone RH186L12, c... 36 0.28 5
(AC092567) Homo sapiens BAC clone CTD-2010B19 from 2, comple... 38 0.29 6
(AC146752) Medicago truncatula clone mth2-62d4, complete seq... 36 0.32 5
(BX323543) Zebrafish DNA sequence from clone DKEYP-67E1 in l... 48 0.33 1
(AC106830) Mus musculus chromosome 15, clone RP24-402C20, co... 48 0.33 1
(EA770792) Sequence 6 from patent US 7381544. 48 0.33 1
(EA268608) Sequence 6 from patent US 7244601. 48 0.33 1
(BD374741) Fusion Proteins for Use in Enzymatic Synthesis of... 48 0.33 1
(CR855304) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.33 1
(ED650621) GM_WBa0068J09.r GM_WBa Glycine max genomic clone ... 48 0.33 1
(CL490513) SAIL_539_F11.v2 SAIL Collection Arabidopsis thali... 48 0.33 1
(EC825433) SME00009125 esmbsro2 Sawyeria marylandensis cDNA,... 48 0.33 1
(BX927372) Zebrafish DNA sequence from clone CH211-241H14 in... 34 0.47 6
(DW282640) UI-S-HH0-adx-i-04-0-UI.s1 UI-S-HH0 Euprymna scolo... 36 0.49 3
(AX344551) Sequence 2 from Patent WO0200932. 42 0.49 8
(AC087860) Bos taurus clone RP42-135P2, complete sequence. 46 0.50 2
(AC010255) Homo sapiens chromosome 5 clone CTC-441N14, compl... 42 0.50 5
(CZ870822) OC__Ba0269D24.f OC__Ba Oryza coarctata genomic cl... 34 0.54 3
(EJ881187) 1093018397029 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.68 2
(EK586199) 1095522082703 Global-Ocean-Sampling_GS-32-01-01-1... 36 0.68 2
(EJ269771) 1095353003386 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.71 2
(AC166406) Bos taurus clone CH240-68N11, WORKING DRAFT SEQUE... 36 0.74 4
(AJ844309) Himantopterus dohertyi mitochondrial partial tRNA... 42 0.75 2
(CT583658) Zebrafish DNA sequence from clone DKEY-114L24 in ... 38 0.81 3
(AX349036) Sequence 494 from Patent WO0202807. 34 0.82 4
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 34 0.83 7
(AJ844318) Phauda mimica mitochondrial partial tRNA-Ser gene... 36 0.91 2
(AC018561) Homo sapiens clone RP11-1N8, WORKING DRAFT SEQUEN... 32 0.94 9
(CR456684) Zebrafish DNA sequence from clone DKEY-46I8 in li... 40 1.0 4
(DJ387405) Diagnosis of Diseases Associated with Apoptosis. 46 1.1 2
(AX346210) Sequence 1281 from Patent WO0200928. 46 1.1 2
(AX281313) Sequence 55 from Patent WO0177164. 46 1.1 2
(AM467093) Vitis vinifera contig VV78X210055.4, whole genome... 36 1.1 2
(AF494278) Chaetosphaeridium globosum chloroplast, complete ... 38 1.2 6
(AP009972) Lotus japonicus genomic DNA, chromosome 3, clone:... 46 1.2 2
(BX927115) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.3 5
(AC223958) Bos taurus clone CH240-453I17, WORKING DRAFT SEQU... 46 1.3 4
(AC154881) Mus musculus chromosome 15, clone RP24-259H19, co... 46 1.3 1
(AC175366) Pan troglodytes chromosome X clone CH251-499L9 ma... 46 1.3 1
(AC165137) Pan troglodytes chromosome X clone PTB-012N04 map... 46 1.3 1
(AM464041) Vitis vinifera contig VV78X074917.2, whole genome... 46 1.3 1
(AM452760) Vitis vinifera, whole genome shotgun sequence, co... 46 1.3 1
(AL161594) Arabidopsis thaliana DNA chromosome 4, contig fra... 46 1.3 1
(AL050351) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 46 1.3 1
(AC146588) Medicago truncatula chromosome 8 clone mth2-145c3... 46 1.3 1
(DD010735) Diagnosis of known genetic Parameters within the ... 46 1.3 1
(AX510598) Sequence 5293 from Patent WO0216655. 46 1.3 1
(AX344561) Sequence 12 from Patent WO0200932. 46 1.3 1
(AL359757) Human DNA sequence from clone RP11-165I9 on chrom... 46 1.3 1
(AF241726) Homo sapiens chromosome X, clones RP5-819E23 and ... 46 1.3 1
(AC092633) Homo sapiens BAC clone RP11-339P1 from 2, complet... 46 1.3 1
(AC101708) Mus musculus clone RP23-268E6, LOW-PASS SEQUENCE ... 46 1.3 1
(CU914717) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(CU896552) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(BX324168) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.3 1
(AC221197) Bos taurus clone CH240-398N20, WORKING DRAFT SEQU... 46 1.3 1
(AC174365) Medicago truncatula chromosome 8 clone mth2-45k17... 46 1.3 1
(FH080430) CHO_OF3708xj02r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 1.3 1
(FH075258) CHO_OF3688xm23f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 1.3 1
(FH041296) CHO_OF3309xf10f1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 1.3 1
(EK436230) 1095521046539 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.3 1
(EK167650) 1095458060171 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.3 1
(AL764757) Arabidopsis thaliana T-DNA flanking sequence GK-1... 46 1.3 1
(EJ173873) 1092344093237 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.3 1
(CR834421) GR0AAA68CD05RM1 INRA BAC Bos taurus genomic clone... 46 1.3 1
(CR513400) mth4-42M16FM2 BAC end, cultivar Jemalong A17 of M... 46 1.3 1
(CR513233) mth4-42M15FM2 BAC end, cultivar Jemalong A17 of M... 46 1.3 1
(AG529383) Mus musculus molossinus DNA, clone:MSMg01-438O09.... 46 1.3 1
(CC925789) t084n11ba.f1 TAMBT Bos taurus genomic clone t084n... 46 1.3 1
(EB935246) 11539238 ZF31XL Danio rerio cDNA clone 3551918, m... 46 1.3 1
(AC185044) Bos taurus clone CH240-267A19, WORKING DRAFT SEQU... 40 1.4 2
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 34 1.5 7
(CU183096) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 1.5 5
(AY942850) Meloidogyne hapla cytochrome oxidase subunit II (... 38 1.5 2
(AL133466) Human DNA sequence from clone RP5-831C21 on chrom... 40 1.5 4
(AJ294725) Astasia longa complete chloroplast genome. 44 1.6 4
(AM285321) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 1.8 5
(FL641192) TS01-H11 Reticulitermes flavipes symbiont library... 38 1.9 2
(AF268060) Candidatus Carsonella ruddii natural-host Aphalar... 40 1.9 2
(ER327388) 1092344223698 Global-Ocean-Sampling_GS-34-01-01-1... 32 2.0 3
(AC177299) Strongylocentrotus purpuratus clone R3-1033E2, WO... 34 2.0 4

>(AU270139) Dictyostelium discoideum vegetative cDNA clone:VSJ576,
5' end single read.
Length = 405

Score = 803 bits (405), Expect = 0.0
Identities = 405/405 (100%)
Strand = Plus / Plus


Query: 1 aaataaacaaaataataataaaatgtcagacgatgaacatgttataaacttttatagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaataaacaaaataataataaaatgtcagacgatgaacatgttataaacttttatagacc 60


Query: 61 aaacgagattccatatggcccattttcaaatttctctcgtcatactgttttttataataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaacgagattccatatggcccattttcaaatttctctcgtcatactgttttttataataa 120


Query: 121 tgttttggcaaaaacatcagaacacatttttcaggctatgaaattcgaaggcacacaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgttttggcaaaaacatcagaacacatttttcaggctatgaaattcgaaggcacacaaca 180


Query: 181 ttttaatgatgttttaaacaccaaaacccctggtgatagtgctaaaatgggtagagatcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttaatgatgttttaaacaccaaaacccctggtgatagtgctaaaatgggtagagatcg 240


Query: 241 taaacgtccattgagaaaagattgggaaggtgttaaagatgaactcatgtatgaaatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaacgtccattgagaaaagattgggaaggtgttaaagatgaactcatgtatgaaatttg 300


Query: 301 tttagcaaaattctctcaacataaagatattcaaaaaattttattagaaacaggtgacgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttagcaaaattctctcaacataaagatattcaaaaaattttattagaaacaggtgacgc 360


Query: 361 cacacttgtcgaacatactggaaatgatagttattggggtgatgg 405
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cacacttgtcgaacatactggaaatgatagttattggggtgatgg 405

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 715,903,832
Number of extensions: 50863806
Number of successful extensions: 5175246
Number of sequences better than 10.0: 327
Length of query: 546
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 523
Effective length of database: 93,106,754,628
Effective search space: 48694832670444
Effective search space used: 48694832670444
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.23
Homology vs Protein
Query= Contig-U07017-1 (Contig-U07017-1Q) /CSM_Contig/Contig-U07017-1Q.Seq.d
(546 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM746676_3367(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 139 5e-32
CP000828_3613(CP000828|pid:none) Acaryochloris marina MBIC11017,... 130 2e-29
CP000155_6693(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 129 5e-29
CP001037_1681(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 122 8e-27
FM242711_896(FM242711|pid:none) Listeria monocytogenes Clip81459... 121 1e-26
CP001175_1700(CP001175|pid:none) Listeria monocytogenes HCC23, c... 121 1e-26
AE017262_908(AE017262|pid:none) Listeria monocytogenes str. 4b F... 120 2e-26
AM263198_883(AM263198|pid:none) Listeria welshimeri serovar 6b s... 119 4e-26
BX294135_214(BX294135|pid:none) Rhodopirellula baltica SH 1 comp... 114 2e-24
AM398681_2245(AM398681|pid:none) Flavobacterium psychrophilum JI... 110 2e-23
CU928145_819(CU928145|pid:none) Escherichia coli 55989 chromosom... 107 2e-22
CU928160_807(CU928160|pid:none) Escherichia coli IAI1 chromosome... 107 2e-22
(P30176) RecName: Full=Swarming motility protein ybiA; &AP00904... 107 2e-22
CP000946_2785(CP000946|pid:none) Escherichia coli ATCC 8739, com... 107 2e-22
(Q323Z6) RecName: Full=Swarming motility protein ybiA; &CP00003... 105 6e-22
CP000875_353(CP000875|pid:none) Herpetosiphon aurantiacus ATCC 2... 105 6e-22
(Q0T6G3) RecName: Full=Swarming motility protein ybiA; &(Q83LU8... 105 6e-22
CP000377_1897(CP000377|pid:none) Silicibacter sp. TM1040, comple... 100 2e-20
CP000951_1917(CP000951|pid:none) Synechococcus sp. PCC 7002, com... 99 9e-20
CP000753_1667(CP000753|pid:none) Shewanella baltica OS185, compl... 99 9e-20
CP001037_4832(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 97 2e-19
CP000891_1721(CP000891|pid:none) Shewanella baltica OS195, compl... 96 6e-19
CP000828_2643(CP000828|pid:none) Acaryochloris marina MBIC11017,... 94 2e-18
CP001344_71(CP001344|pid:none) Cyanothece sp. PCC 7425, complete... 92 1e-17
FM954973_1479(FM954973|pid:none) Vibrio splendidus LGP32 chromos... 84 2e-15
EF583821_135(EF583821|pid:none) Bacillus phage 0305phi8-36, comp... 80 3e-14
BA000039_2463(BA000039|pid:none) Thermosynechococcus elongatus B... 80 4e-14
CP000471_1163(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 77 3e-13
CP000744_3014(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 75 8e-13
CP000790_2284(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch... 75 1e-12
CP000157_157(CP000157|pid:none) Erythrobacter litoralis HTCC2594... 72 7e-12
AP005065_12(AP005065|pid:none) Oryza sativa Japonica Group genom... 71 2e-11
AP008208_1258(AP008208|pid:none) Oryza sativa (japonica cultivar... 71 2e-11
AK065460_1(AK065460|pid:none) Oryza sativa Japonica Group cDNA c... 71 2e-11
CP001287_2027(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 69 8e-11
AX546684_1(AX546684|pid:none) Sequence 3 from Patent WO02064794. 67 2e-10
AX546718_1(AX546718|pid:none) Sequence 37 from Patent WO02064794. 67 2e-10
CP000860_410(CP000860|pid:none) Candidatus Desulforudis audaxvia... 64 2e-09
CR954207_234(CR954207|pid:none) Ostreococcus tauri strain OTTH05... 61 2e-08
AC159421_18(AC159421|pid:none) Trypanosoma brucei chromosome 7 c... 58 1e-07
AP008955_3603(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 54 2e-06
CP000282_405(CP000282|pid:none) Saccharophagus degradans 2-40, c... 47 3e-04
CP001028_263(CP001028|pid:none) Burkholderia ambifaria MC40-6 pl... 46 5e-04
CU928158_2910(CU928158|pid:none) Escherichia fergusonii ATCC 354... 45 0.002
AC148171_7(AC148171|pid:none) Medicago truncatula clone mth2-30a... 43 0.005
CP000884_5742(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 42 0.008
CP000246_141(CP000246|pid:none) Clostridium perfringens ATCC 131... 42 0.008
AP008955_4542(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 42 0.010
FM180568_3361(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 42 0.010
CU633453_111(CU633453|pid:none) Podospora anserina genomic DNA c... 42 0.010
CP000438_4884(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 42 0.010
CP001291_3137(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 42 0.013
AM494943_11(AM494943|pid:none) Leishmania braziliensis chromosom... 41 0.018
AE014075_855(AE014075|pid:none) Escherichia coli CFT073, complet... 41 0.023
CP001357_582(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ... 41 0.023
AF016432_10(AF016432|pid:none) Caenorhabditis elegans cosmid C07... 40 0.039
CP000744_5156(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 40 0.039
CT005245_13(CT005245|pid:none) Leishmania major strain Friedlin,... 40 0.051
AM502224_13(AM502224|pid:none) Leishmania infantum chromosome 6. 39 0.067
DQ003638_50(DQ003638|pid:none) Listeria phage A511, complete gen... 39 0.087
CP000247_797(CP000247|pid:none) Escherichia coli 536, complete g... 38 0.15
AC148171_8(AC148171|pid:none) Medicago truncatula clone mth2-30a... 38 0.15
AM235768_312(AM235768|pid:none) Pseudomonas fluorescens SBW25 pl... 36 0.57
CP000524_552(CP000524|pid:none) Bartonella bacilliformis KC583, ... 36 0.74
AY283928_70(AY283928|pid:none) Bacteriophage KVP40, complete gen... 36 0.74
AF068713_1(AF068713|pid:none) Caenorhabditis elegans cosmid T24A... 35 1.6
CR628337_2057(CR628337|pid:none) Legionella pneumophila str. Len... 35 1.6
FJ168556_2(FJ168556|pid:none) Bodo saltans clone fosmid 93E01, c... 35 1.6
BA000036_1697(BA000036|pid:none) Corynebacterium glutamicum ATCC... 34 2.1
AY176327_4(AY176327|pid:none) Staphylococcus phage K, complete g... 34 2.8
AM910991_287(AM910991|pid:none) Plasmodium knowlesi strain H chr... 33 4.8
FJ664185_1(FJ664185|pid:none) Littorina littorea Sarp-3 mRNA. 33 6.3
BA000030_2599(BA000030|pid:none) Streptomyces avermitilis MA-468... 32 8.2

>AM746676_3367(AM746676|pid:none) Sorangium cellulosum 'So ce 56'
complete genome.
Length = 145

Score = 139 bits (350), Expect = 5e-32
Identities = 72/139 (51%), Positives = 89/139 (64%)
Frame = +2

Query: 41 VINFYRPNEIPYGPFSNFSRHTVFYNNVLAKTSEHIFQAMKFEGTQHFNDVLNTKTPGDS 220
VI FYR + +G FSNFSRH V + TSEH FQA KF GT+H + N PG++
Sbjct: 3 VIRFYRSGDA-HGFFSNFSRHPVTLKGKVWPTSEHYFQAQKFPGTEHEEVIRNAPGPGEA 61

Query: 221 AKMGRDRKRPLRKDWEGVKDELMYEICLAKFSQHKDIQKILLETGDATLVEHTXXXXXXX 400
A+MGR R RPLR DWE VKD++M E+ LAKF+QH+D+++ LL+TGDA LVEHT
Sbjct: 62 ARMGRQRSRPLRPDWEQVKDDVMREVVLAKFTQHEDLRRALLDTGDAELVEHTANDAYWA 121

Query: 401 XXXXXXXRNQLGKTLMRVR 457
RN LG LM VR
Sbjct: 122 DGGDGSGRNMLGVILMEVR 140

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 733,465,246
Number of extensions: 13971780
Number of successful extensions: 30128
Number of sequences better than 10.0: 73
Number of HSP's gapped: 30093
Number of HSP's successfully gapped: 75
Length of query: 182
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 62
Effective length of database: 656,452,579
Effective search space: 40700059898
Effective search space used: 40700059898
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.55 gvh: 0.33 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for Contig-U07017-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0