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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U07003-1
Contig ID Contig-U07003-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U07003-1 (Contig-U07003-1Q) /CSM_Contig/Contig-U07003-1Q.Seq.d
AAACAATTTTATAAAATGAAAATTATTTTAACATTATTATTATTAGCATT
GGTTTGTGTTAATTCTCAATTGATTAATTATACCCCTTATAACGAAGATT
GTACTTCAATTGTAGATGGTGTTGGTTTTGGTTTATTACCATTTACTTGT
TTATTAAACACTACTACCGAATCAATTTATTCATTTGATTTATATGATCA
ACCTTATGTAAATATTTCAAGTTCTCATACAGGATTTGTGATGATCCAGT
TTCGACCCAAATTTTTAAACTTGATTCATGTGGATATTCTAAATACTCAA
AAACAAATTACTATGTTTACCAATCAAATCAACCAGAAGTTCCAGCTAAT
TCATATATATATGAACAATATGACTCTACTTGCGAAACTCGTCAAAGTTA
TTGGTATGCTACAAATGGAACTGTTGGTTGTTGATTATAAACAAAATTTT
TCAACAACTTATCTTTGCATATCTAATCAACCATTCACCTAATGTATGCA
CAGGATGGTAAAATNGTGTCCTTACACCAGTGAAGACATCTTGCGAAAAT
TCAAATGGAATTATATTACATGNACCGTTTAAATAA
Gap no gap
Contig length 586
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 2112193
End point 2112781
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U07003
List of clone(s) 

est1=VSJ412E,1,587
Translated Amino Acid sequence 
KQFYKMKIILTLLLLALVCVNSQLINYTPYNEDCTSIVDGVGFGLLPFTCLLNTTTESIY
SFDLYDQPYVNISSSHTGFVMIQFRPKFLNLIHVDILNTQKQITMFTNQINQKFQLIHIY
MNNMTLLAKLVKVIGMLQMELLVVDYKQNFSTTYLCISNQPFT*cmhrmvkxcpytsedi
lrkfkwnyitxtv*i
Translated Amino Acid sequence (All Frames) 
Frame A:
KQFYKMKIILTLLLLALVCVNSQLINYTPYNEDCTSIVDGVGFGLLPFTCLLNTTTESIY
SFDLYDQPYVNISSSHTGFVMIQFRPKFLNLIHVDILNTQKQITMFTNQINQKFQLIHIY
MNNMTLLAKLVKVIGMLQMELLVVDYKQNFSTTYLCISNQPFT*cmhrmvkxcpytsedi
lrkfkwnyitxtv*i


Frame B:
nnfik*klf*hyyy*hwfvliln*liiplitkivlql*mvlvlvyyhllvy*tllpnqfi
hliyminlm*ifqvliqdl**ssfdpnf*t*fmwif*ilknkllclpikstrsss*fiyi
*ti*lylrnsskllvcykwncwlliinkifqqlifaylinhspnvctgw*nxvltpvkts
censngiilhxpfk*


Frame C:
til*nenyfniiiisiglc*fsid*lypl*rrlyfncrwcwfwfitiylfikhyyrinlf
i*fi*stlckyfkfsyricddpvstqifkldscgyskysktnyyvyqsnqpevpansyiy
eqydstcetrqsywyatngtvgc*l*tkffnnlslhi*stihlmyaqdgkxvslhq*rhl
akiqmelyymxrln
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U07003-1 (Contig-U07003-1Q)
/CSM_Contig/Contig-U07003-1Q.Seq.d
         (586 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U07003-1 (Contig-U07003-1Q) /CSM_Contig/Conti...  1150  0.0
Contig-U09419-1 (Contig-U09419-1Q) /CSM_Contig/Conti...    52  7e-07
Contig-U13620-1 (Contig-U13620-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U12382-1 (Contig-U12382-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10847-1 (Contig-U10847-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U04518-1 (Contig-U04518-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U14782-1 (Contig-U14782-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U12799-1 (Contig-U12799-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U12547-1 (Contig-U12547-1Q) /CSM_Contig/Conti...    36  0.041

>Contig-U07003-1 (Contig-U07003-1Q) /CSM_Contig/Contig-U07003-1Q.Seq.d
          Length = 586

 Score = 1150 bits (580), Expect = 0.0
 Identities = 586/586 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacaattttataaaatgaaaattattttaacattattattattagcattggtttgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaacaattttataaaatgaaaattattttaacattattattattagcattggtttgtgtt 60

                                                                       
Query: 61  aattctcaattgattaattataccccttataacgaagattgtacttcaattgtagatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aattctcaattgattaattataccccttataacgaagattgtacttcaattgtagatggt 120

                                                                       
Query: 121 gttggttttggtttattaccatttacttgtttattaaacactactaccgaatcaatttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttggttttggtttattaccatttacttgtttattaaacactactaccgaatcaatttat 180

                                                                       
Query: 181 tcatttgatttatatgatcaaccttatgtaaatatttcaagttctcatacaggatttgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcatttgatttatatgatcaaccttatgtaaatatttcaagttctcatacaggatttgtg 240

                                                                       
Query: 241 atgatccagtttcgacccaaatttttaaacttgattcatgtggatattctaaatactcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgatccagtttcgacccaaatttttaaacttgattcatgtggatattctaaatactcaa 300

                                                                       
Query: 301 aaacaaattactatgtttaccaatcaaatcaaccagaagttccagctaattcatatatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaacaaattactatgtttaccaatcaaatcaaccagaagttccagctaattcatatatat 360

                                                                       
Query: 361 atgaacaatatgactctacttgcgaaactcgtcaaagttattggtatgctacaaatggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgaacaatatgactctacttgcgaaactcgtcaaagttattggtatgctacaaatggaa 420

                                                                       
Query: 421 ctgttggttgttgattataaacaaaatttttcaacaacttatctttgcatatctaatcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgttggttgttgattataaacaaaatttttcaacaacttatctttgcatatctaatcaa 480

                                                                       
Query: 481 ccattcacctaatgtatgcacaggatggtaaaatngtgtccttacaccagtgaagacatc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccattcacctaatgtatgcacaggatggtaaaatngtgtccttacaccagtgaagacatc 540

                                                         
Query: 541 ttgcgaaaattcaaatggaattatattacatgnaccgtttaaataa 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgcgaaaattcaaatggaattatattacatgnaccgtttaaataa 586


 Score = 32.2 bits (16), Expect = 0.64
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 350 ttcatatatatatgaa 365
           ||||||||||||||||
Sbjct: 365 ttcatatatatatgaa 350


>Contig-U09419-1 (Contig-U09419-1Q) /CSM_Contig/Contig-U09419-1Q.Seq.d
          Length = 907

 Score = 52.0 bits (26), Expect = 7e-07
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 13  aaaatgaaaattattttaacattattattattagcatt 50
           ||||||||| |||||||| |||||||||||||| ||||
Sbjct: 740 aaaatgaaagttattttatcattattattattaacatt 703


>Contig-U13620-1 (Contig-U13620-1Q) /CSM_Contig/Contig-U13620-1Q.Seq.d
          Length = 711

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 13 aaaatgaaaattattttaacattat 37
          ||||||||||| |||||||||||||
Sbjct: 28 aaaatgaaaataattttaacattat 52


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,208
Number of Sequences: 6905
Number of extensions: 22208
Number of successful extensions: 8452
Number of sequences better than 10.0: 862
length of query: 586
length of database: 5,674,871
effective HSP length: 16
effective length of query: 570
effective length of database: 5,564,391
effective search space: 3171702870
effective search space used: 3171702870
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U07003-1 (Contig-U07003-1Q) /CSM_Contig/Contig-U07003-1Q.Seq.d
         (586 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269873) Dictyostelium discoideum vegetative cDNA clone:VS...   646   0.0    3
(AU269874) Dictyostelium discoideum vegetative cDNA clone:VS...   684   0.0    6
(AC164784) Bos taurus clone CH240-154O20, *** SEQUENCING IN ...    56   0.001  1
(BZ863996) CH240_207P6.TJ CHORI-240 Bos taurus genomic clone...    56   0.001  1
(AC162962) Bos taurus clone CH240-126G17, WORKING DRAFT SEQU...    50   0.090  1
(CW479721) fsbb001f238g07k0 Sorghum methylation filtered lib...    50   0.090  1
(DV379262) NACNR17TO Aedes aegypti infected with Plasmodium ...    50   0.090  1
(DV379215) NACNR17TF Aedes aegypti infected with Plasmodium ...    50   0.090  1
(DV372546) NACMF65TO Aedes aegypti infected with Plasmodium ...    50   0.090  1
(DV372545) NACMF65TF Aedes aegypti infected with Plasmodium ...    50   0.090  1
(DV345042) NABWH09TF Aedes aegypti infected with Brugia Mala...    50   0.090  1
(DV337309) NABUO92TO Aedes aegypti infected with Plasmodium ...    50   0.090  1
(DV335703) NABV180TO Aedes aegypti infected with Plasmodium ...    50   0.090  1
(DV335702) NABV180TF Aedes aegypti infected with Plasmodium ...    50   0.090  1
(DV333397) NABSF38TF Aedes aegypti infected with Plasmodium ...    50   0.090  1
(DV328204) NABR716TF Aedes aegypti infected with Plasmodium ...    50   0.090  1
(DV293352) NABMT74TF Aedes aegypti infected with Brugia Mala...    50   0.090  1
(DV293269) NABMT61TRB Aedes aegypti infected with Brugia Mal...    50   0.090  1
(DV278108) NAAF224TF Aedes aegypti - Fat Bodies Normalized (...    50   0.090  1
(DV276715) NAAHF49TR Aedes aegypti - Fat Bodies Normalized (...    50   0.090  1
(AC129561) Mus musculus chromosome 1, clone RP23-192P10, com...    38   0.83   4
(AC011492) Homo sapiens chromosome 19 clone CTB-187L3, compl...    40   1.2    4
(AC122820) Mus musculus BAC clone RP23-200M5 from chromosome...    46   1.4    1
(AC079460) Homo sapiens 12 BAC RP11-297L6 (Roswell Park Canc...    46   1.4    1
(AC068862) Homo sapiens clone RP11-724J16, WORKING DRAFT SEQ...    46   1.4    1
(CP000736) Staphylococcus aureus subsp. aureus JH1, complete...    46   1.4    1
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151...    46   1.4    1
(CP000703) Staphylococcus aureus subsp. aureus JH9, complete...    46   1.4    1
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375...    46   1.4    1
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co...    46   1.4    1
(CP000046) Staphylococcus aureus subsp. aureus COL, complete...    46   1.4    1
(BX571857) Staphylococcus aureus strain MSSA476, complete ge...    46   1.4    1
(BX571856) Staphylococcus aureus subsp. aureus strain MRSA25...    46   1.4    1
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp...    46   1.4    1
(BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com...    46   1.4    1
(BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com...    46   1.4    1
(AP009351) Staphylococcus aureus subsp. aureus str. Newman D...    46   1.4    1
(AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp...    46   1.4    1
(AJ938182) Staphylococcus aureus RF122 complete genome.            46   1.4    1
(AM451940) Vitis vinifera contig VV78X199560.12, whole genom...    36   2.0    4
(AC158937) Mus musculus chromosome 3, clone RP23-290L18, com...    38   2.1    4
(AC146681) Medicago truncatula clone mth2-77o10, complete se...    34   2.6    4
(AC073883) Mus musculus strain C57BL/6J chromosome 3 clone r...    38   2.6    4
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    34   3.3    8
(AC114435) Rattus norvegicus clone CH230-179G15, *** SEQUENC...    38   3.4    5
(AC019067) Homo sapiens BAC clone RP11-171B14 from 2, comple...    40   4.4    3
(BX470133) Zebrafish DNA sequence from clone DKEY-169N7 in l...    40   5.5    4
(CU463283) Zebrafish DNA sequence from clone CH211-226M13.         44   5.5    1
(DQ773345) Synthetic construct Vibrio cholerae clone FLH1978...    44   5.5    1
(AL671981) Mouse DNA sequence from clone RP23-358P8 on chrom...    44   5.5    1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    44   5.5    1
(AP005694) Oryza sativa Japonica Group genomic DNA, chromoso...    44   5.5    1
(AP005398) Oryza sativa Japonica Group genomic DNA, chromoso...    44   5.5    1
(AM474394) Vitis vinifera contig VV78X050928.4, whole genome...    44   5.5    1
(AM456416) Vitis vinifera, whole genome shotgun sequence, co...    44   5.5    1
(AM446126) Vitis vinifera contig VV78X221899.13, whole genom...    44   5.5    1
(AC108670) Homo sapiens 3 BAC RP11-218A22 (Roswell Park Canc...    44   5.5    1
(AC011311) Homo sapiens 3 BAC RP11-525K18 (Roswell Park Canc...    44   5.5    1
(AC143383) Macaca mulatta clone CH250-269I2, *** SEQUENCING ...    44   5.5    1
(AC109883) Rattus norvegicus clone CH230-310M16, *** SEQUENC...    44   5.5    1
(ER409451) 1095368011591 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.5    1
(DX421263) BE1074_G15_F IASMA L1 HindIII BAC library Vitis v...    44   5.5    1
(DX421222) BE1074_E15_F IASMA L1 HindIII BAC library Vitis v...    44   5.5    1
(AG647340) Macaca fuscata fuscata DNA, clone: MSB2-059A08_R,...    44   5.5    1
(CC266952) CH261-51G24_RM1.1 CH261 Gallus gallus genomic clo...    44   5.5    1
(CV041540) 4139414 BARC_3GAL chicken mixed tissue Gallus gal...    44   5.5    1
(CN383164) 4117349 BARC_3GAL chicken mixed tissue Gallus gal...    44   5.5    1
(CA382541) 662385 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ...    44   5.5    1
(BU374740) 603812102F1 CSEQCHN74 Gallus gallus cDNA clone Ch...    44   5.5    1
(BU314765) 603541022F1 CSEQCHN61 Gallus gallus cDNA clone Ch...    44   5.5    1
(FF335450) 280458102 Pea aphid whole body normalized full le...    44   5.5    1
(FF330497) 280443439 Pea aphid whole body normalized full le...    44   5.5    1
(FC289777) CAGN5177.fwd CAGN Nematostella vectensis Nemve mi...    44   5.5    1
(EY859437) CM30-C1-401-010-F11-CT.F Sweet lime leaf, infecte...    44   5.5    1
(EX638361) 256624649 Pea aphid whole body normalized full le...    44   5.5    1
(CP000627) Vibrio cholerae O395 chromosome 2, complete genome.     44   5.5    1
(AE003852) Vibrio cholerae O1 biovar eltor str. N16961 chrom...    44   5.5    1
(AC162954) Bos taurus clone CH240-125I6, WORKING DRAFT SEQUE...    34   6.2    5
(AM459992) Vitis vinifera contig VV78X036999.6, whole genome...    36   6.7    3
(CU207397) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.3    3
(AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   8.1    7
(AJ421479) Mus musculus X-inactivation center region; segmen...    32   9.1    7

>(AU269873) Dictyostelium discoideum vegetative cDNA clone:VSJ412,
           5' end single read.
          Length = 563

 Score =  646 bits (326), Expect(3) = 0.0
 Identities = 328/329 (99%)
 Strand = Plus / Plus


Query: 236 ttgtgatgatccagtttcgacccaaatttttaaacttgattcatgtggatattctaaata 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ttgtgatgatccagtttcgacccaaatttttaaacttgattcatgtggatattctaaata 294


Query: 296 ctcaaaaacaaattactatgtttaccaatcaaatcaaccagaagttccagctaattcata 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctcaaaaacaaattactatgtttaccaatcaaatcaaccagaagttccagctaattcata 354


Query: 356 tatatatgaacaatatgactctacttgcgaaactcgtcaaagttattggtatgctacaaa 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tatatatgaacaatatgactctacttgcgaaactcgtcaaagttattggtatgctacaaa 414


Query: 416 tggaactgttggttgttgattataaacaaaatttttcaacaacttatctttgcatatcta 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tggaactgttggttgttgattataaacaaaatttttcaacaacttatctttgcatatcta 474


Query: 476 atcaaccattcacctaatgtatgcacaggatggtaaaatngtgtccttacaccagtgaag 535
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 475 atcaaccattcacctaatgtatgcacaggatggtaaaatggtgtccttacaccagtgaag 534


Query: 536 acatcttgcgaaaattcaaatggaattat 564
           |||||||||||||||||||||||||||||
Sbjct: 535 acatcttgcgaaaattcaaatggaattat 563

 Score =  307 bits (155), Expect(3) = 0.0
 Identities = 155/155 (100%)
 Strand = Plus / Plus


Query: 82  accccttataacgaagattgtacttcaattgtagatggtgttggttttggtttattacca 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  accccttataacgaagattgtacttcaattgtagatggtgttggttttggtttattacca 141


Query: 142 tttacttgtttattaaacactactaccgaatcaatttattcatttgatttatatgatcaa 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 tttacttgtttattaaacactactaccgaatcaatttattcatttgatttatatgatcaa 201


Query: 202 ccttatgtaaatatttcaagttctcatacaggatt 236
           |||||||||||||||||||||||||||||||||||
Sbjct: 202 ccttatgtaaatatttcaagttctcatacaggatt 236

 Score = 40.1 bits (20), Expect(3) = 0.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 1  aaacaattttataaaatgaa 20
          ||||||||||||||||||||
Sbjct: 1  aaacaattttataaaatgaa 20

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 667,526,325
Number of extensions: 41632754
Number of successful extensions: 3370666
Number of sequences better than 10.0: 82
Length of query: 586
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 563
Effective length of database: 93,106,754,628
Effective search space: 52419102855564
Effective search space used: 52419102855564
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U07003-1 (Contig-U07003-1Q) /CSM_Contig/Contig-U07003-1Q.Seq.d
         (586 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869570_1(DQ869570|pid:none) Podocoryne carnea beta-catenin mRN...    40   0.061
CP000117_4810(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    38   0.18
AC002334_21(AC002334|pid:none) Arabidopsis thaliana chromosome 2...    35   1.1
CP000312_184(CP000312|pid:none) Clostridium perfringens SM101, c...    35   2.0
BA000023_2204(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,...    34   2.5
CP000553_340(CP000553|pid:none) Prochlorococcus marinus str. NAT...    34   3.3
(A6L0X5) RecName: Full=Holliday junction ATP-dependent DNA helic...    33   5.7
BA000016_210(BA000016|pid:none) Clostridium perfringens str. 13 ...    32   9.7

>DQ869570_1(DQ869570|pid:none) Podocoryne carnea beta-catenin mRNA,
           complete cds.
          Length = 812

 Score = 39.7 bits (91), Expect = 0.061
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +1

Query: 256 PKFLNLIHVDILNTQKQITMFTNQINQKFQLIHIYMNNMTLLAKLVKV 399
           P+ + L+H   L T +Q +   NQ+ +K    H  MNNM ++A LVKV
Sbjct: 213 PELIRLLHEGDLQTVQQASTMINQLTKKEASCHAVMNNMQMVATLVKV 260

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 990,809,691
Number of extensions: 21202272
Number of successful extensions: 45846
Number of sequences better than 10.0: 8
Number of HSP's gapped: 45824
Number of HSP's successfully gapped: 8
Length of query: 195
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 73
Effective length of database: 650,044,009
Effective search space: 47453212657
Effective search space used: 47453212657
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.98  gvh: 0.81  alm: 0.34  top: 0.07  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: cytoplasmic
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for Contig-U07003-1 is exc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0