Contig-U06999-1
Contig ID Contig-U06999-1
Contig update 2001. 8.30
Contig sequence
>Contig-U06999-1 (Contig-U06999-1Q) /CSM_Contig/Contig-U06999-1Q.Seq.d
GGTAGAAAGAGAATGTCTTCATCAGTATTTAATTTATTATTTAATAATAA
TGAATATGTTAATTGTAATAAATTTAATTTAATTAAAGAATCAATTCAAA
ATGAAAAATTGGATTTGGAATCAAATCAAAACCAAAAACCAAAAATTTAT
CCATTAATAGAAATAAATGAATCAAATGATAGCTATATTATAGAAGTAGA
AATACCAGGAATTCCAATTAACCAAATTAAAATTTCAATAAAAAATTTTA
TTTTAACCTTAAAAATTTTCAAAACCAATAATAATAATAATAATAATAAT
AATGATAATAATAATAATAATAATAATTCAAAAGAAAAATATAAAAATAT
TTTCTCTGATAGAAAATTTGGTGTATTTGAAAGAAATATTAATTTCCAAA
AAGTAAAGGATAAAATTATTATTAGTAATATTACTTCAAATTTAGACAAT
GGTATTTTGACTTTAAAACTAAATAAAAAAAAAGGTTCACCAATTTAAAG
TTTTTTATTTTTTTTAAT

Gap no gap
Contig length 518
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 2
Link to clone list U06999
List of clone(s)

est1=VSJ347F,1,519
est2=VSJ347Z,259,514
Translated Amino Acid sequence
GRKRMSSSVFNLLFNNNEYVNCNKFNLIKESIQNEKLDLESNQNQKPKIYPLIEINESND
SYIIEVEIPGIPINQIKISIKNFILTLKIFKTNNNNNNNNNDNNNNNNNSKEKYKNIFSD
RKFGVFERNINFQKVKDKIIISNITSNLDNGILTLKLNKKKGSPI*sflffl


Translated Amino Acid sequence (All Frames)
Frame A:
GRKRMSSSVFNLLFNNNEYVNCNKFNLIKESIQNEKLDLESNQNQKPKIYPLIEINESND
SYIIEVEIPGIPINQIKISIKNFILTLKIFKTNNNNNNNNNDNNNNNNNSKEKYKNIFSD
RKFGVFERNINFQKVKDKIIISNITSNLDNGILTLKLNKKKGSPI*sflffl


Frame B:
vereclhqyliyyliimnmlivinli*lknqfkmknwiwnqiktknqkfih**k*mnqmi
ail*k*kyqefqltklkfq*kilf*p*kfskpiiiiiiiimiiiiiiiiqkknikifsli
enlvylkeiliskk*riklllvillqi*tmvf*l*n*ikkkvhqfkvfyff*


Frame C:
*kenvfisi*fii****ic*l**i*fn*rinsk*kigfgikskpktknlsinrnk*ik**
lyyrsrntrnsn*pn*nfnkkfyfnlknfqnq****************fkrki*kyfl**
kiwci*kky*fpkskg*nyy**yyfkfrqwyfdfktk*kkrftnlkffiffn


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U06999-1 (Contig-U06999-1Q)
/CSM_Contig/Contig-U06999-1Q.Seq.d
(518 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U06999-1 (Contig-U06999-1Q) /CSM_Contig/Conti... 291 4e-79
Contig-U13568-1 (Contig-U13568-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U12269-1 (Contig-U12269-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U06723-1 (Contig-U06723-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U06521-1 (Contig-U06521-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U12201-1 (Contig-U12201-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U12118-1 (Contig-U12118-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U12017-1 (Contig-U12017-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U11866-1 (Contig-U11866-1Q) /CSM_Contig/Conti... 34 0.14

>Contig-U06999-1 (Contig-U06999-1Q) /CSM_Contig/Contig-U06999-1Q.Seq.d
Length = 518

Score = 291 bits (147), Expect = 4e-79
Identities = 147/147 (100%)
Strand = Plus / Plus


Query: 328 tcaaaagaaaaatataaaaatattttctctgatagaaaatttggtgtatttgaaagaaat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcaaaagaaaaatataaaaatattttctctgatagaaaatttggtgtatttgaaagaaat 387


Query: 388 attaatttccaaaaagtaaaggataaaattattattagtaatattacttcaaatttagac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attaatttccaaaaagtaaaggataaaattattattagtaatattacttcaaatttagac 447


Query: 448 aatggtattttgactttaaaactaaat 474
|||||||||||||||||||||||||||
Sbjct: 448 aatggtattttgactttaaaactaaat 474


Score = 157 bits (79), Expect = 1e-38
Identities = 79/79 (100%)
Strand = Plus / Plus


Query: 146 tttatccattaatagaaataaatgaatcaaatgatagctatattatagaagtagaaatac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tttatccattaatagaaataaatgaatcaaatgatagctatattatagaagtagaaatac 205


Query: 206 caggaattccaattaacca 224
|||||||||||||||||||
Sbjct: 206 caggaattccaattaacca 224


Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 1 ggtagaaagagaatgtcttcatcagtatttaa 32
||||||||||||||||||||||||||||||||
Sbjct: 1 ggtagaaagagaatgtcttcatcagtatttaa 32


>Contig-U13568-1 (Contig-U13568-1Q) /CSM_Contig/Contig-U13568-1Q.Seq.d
Length = 751

Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 331 aaagaaaaatataaaaata 349
|||||||||||||||||||
Sbjct: 690 aaagaaaaatataaaaata 708


>Contig-U12269-1 (Contig-U12269-1Q) /CSM_Contig/Contig-U12269-1Q.Seq.d
Length = 1485

Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 410 ataaaattattattagtaa 428
|||||||||||||||||||
Sbjct: 61 ataaaattattattagtaa 43


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7114
Number of Sequences: 6905
Number of extensions: 7114
Number of successful extensions: 989
Number of sequences better than 10.0: 355
length of query: 518
length of database: 5,674,871
effective HSP length: 16
effective length of query: 502
effective length of database: 5,564,391
effective search space: 2793324282
effective search space used: 2793324282
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.11
Homology vs DNA
Query= Contig-U06999-1 (Contig-U06999-1Q) /CSM_Contig/Contig-U06999-1Q.Seq.d
(518 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU269790) Dictyostelium discoideum vegetative cDNA clone:VS... 248 3e-85 4
(AU269791) Dictyostelium discoideum vegetative cDNA clone:VS... 248 9e-64 2
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 34 0.18 2
(BM275362) PfESToaa67g08.y1 Plasmodium falciparum 3D7 gameto... 34 0.24 2
(CA855705) PfESToac18g08.y1 Plasmodium falciparum 3D7 gameto... 34 0.24 2
(ET342697) S0232E16_SP6 CHORI-214 Salmo salar genomic clone ... 48 0.31 1
(ET338733) S0209K15_SP6 CHORI-214 Salmo salar genomic clone ... 48 0.31 1
(ET320014) S0232N13_SP6 CHORI-214 Salmo salar genomic clone ... 48 0.31 1
(EJ329619) 1092963424179 Global-Ocean-Sampling_GS-28-01-01-1... 48 0.31 1
(EJ172823) 1092344089871 Global-Ocean-Sampling_GS-27-01-01-1... 48 0.31 1
(ET028632) PST23275-NR MICB2 Mus musculus genomic clone PST2... 46 1.2 1
(ES610455) m29e04 American mink brain Neovison vison cDNA cl... 46 1.2 1
(BH402108) AG-ND-138C1.TR ND-TAM Anopheles gambiae genomic c... 36 1.6 2
(BX908739) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 32 2.5 2
(BX649297) Zebrafish DNA sequence from clone DKEY-246E14 in ... 32 2.5 2
(CR627484) Zebrafish DNA sequence from clone CH211-281M7 in ... 44 4.9 1
(AM449002) Vitis vinifera contig VV78X089971.8, whole genome... 44 4.9 1
(CS493906) Sequence 784 from Patent WO2006130156. 44 4.9 1
(AC157845) Ornithorhynchus anatinus clone OA_Bb-506K5, WORKI... 44 4.9 1
(AC157612) Ornithorhynchus anatinus clone OA_Bb-556C2, WORKI... 44 4.9 1
(AC107109) Rattus norvegicus clone CH230-16K10, *** SEQUENCI... 44 4.9 1
(CU633199) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(EJ116378) 1092343354854 Global-Ocean-Sampling_GS-27-01-01-1... 44 4.9 1
(DX413598) SOYBF64TH LargeInsertSoybeanGenLibBuild4 Glycine ... 44 4.9 1
(CX162920) 90901.1 Mixed Leaf Solanum tuberosum cDNA clone 9... 44 4.9 1
(CK278893) EST724971 potato abiotic stress cDNA library Sola... 44 4.9 1
(CK277726) EST723804 potato abiotic stress cDNA library Sola... 44 4.9 1
(CK268019) EST714097 potato abiotic stress cDNA library Sola... 44 4.9 1
(CP000937) Francisella philomiragia subsp. philomiragia ATCC... 44 4.9 1
(AC196947) Macaca mulatta clone CH250-168J21, WORKING DRAFT ... 42 7.0 2

>(AU269790) Dictyostelium discoideum vegetative cDNA clone:VSJ347,
5' end single read.
Length = 519

Score = 248 bits (125), Expect(4) = 3e-85
Identities = 125/125 (100%)
Strand = Plus / Plus


Query: 350 ttttctctgatagaaaatttggtgtatttgaaagaaatattaatttccaaaaagtaaagg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttttctctgatagaaaatttggtgtatttgaaagaaatattaatttccaaaaagtaaagg 409


Query: 410 ataaaattattattagtaatattacttcaaatttagacaatggtattttgactttaaaac 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ataaaattattattagtaatattacttcaaatttagacaatggtattttgactttaaaac 469


Query: 470 taaat 474
|||||
Sbjct: 470 taaat 474

Score = 63.9 bits (32), Expect(4) = 3e-85
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 178 gatagctatattatagaagtagaaataccagg 209
||||||||||||||||||||||||||||||||
Sbjct: 178 gatagctatattatagaagtagaaataccagg 209

Score = 50.1 bits (25), Expect(4) = 3e-85
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 1 ggtagaaagagaatgtcttcatcag 25
|||||||||||||||||||||||||
Sbjct: 1 ggtagaaagagaatgtcttcatcag 25

Score = 34.2 bits (17), Expect(4) = 3e-85
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 484 ggttcaccaatttaaag 500
|||||||||||||||||
Sbjct: 484 ggttcaccaatttaaag 500

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 277,825,344
Number of extensions: 18093200
Number of successful extensions: 1573054
Number of sequences better than 10.0: 30
Length of query: 518
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 495
Effective length of database: 93,106,754,628
Effective search space: 46087843540860
Effective search space used: 46087843540860
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 6.23
Homology vs Protein
Query= Contig-U06999-1 (Contig-U06999-1Q) /CSM_Contig/Contig-U06999-1Q.Seq.d
(518 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q86I25) RecName: Full=Small heat shock protein hspG1; &AC11630... 61 1e-08
(Q552K9) RecName: Full=Small heat shock protein hspG2; 54 2e-06
CP000027_924(CP000027|pid:none) Dehalococcoides ethenogenes 195,... 53 5e-06
(Q4UKR8) RecName: Full=Small heat shock protein C2; &CP000053_1... 52 7e-06
AC116967_6(AC116967|pid:none) Dictyostelium discoideum chromosom... 52 1e-05
CP000771_96(CP000771|pid:none) Fervidobacterium nodosum Rt17-B1,... 51 1e-05
CP000688_829(CP000688|pid:none) Dehalococcoides sp. BAV1, comple... 50 3e-05
AJ965256_766(AJ965256|pid:none) Dehalococcoides sp. CBDB1 comple... 50 3e-05
AE000512_367(AE000512|pid:none) Thermotoga maritima MSB8, comple... 49 1e-04
AE006470_636(AE006470|pid:none) Chlorobium tepidum TLS, complete... 49 1e-04
CP000686_190(CP000686|pid:none) Roseiflexus sp. RS-1, complete g... 48 1e-04
AE017354_2149(AE017354|pid:none) Legionella pneumophila subsp. p... 48 1e-04
CP001108_737(CP001108|pid:none) Prosthecochloris aestuarii DSM 2... 48 2e-04
CP000804_4227(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 48 2e-04
CP001348_2844(CP001348|pid:none) Clostridium cellulolyticum H10,... 47 2e-04
CP000675_2274(CP000675|pid:none) Legionella pneumophila str. Cor... 47 2e-04
CP000482_3030(CP000482|pid:none) Pelobacter propionicus DSM 2379... 47 2e-04
CP000916_305(CP000916|pid:none) Thermotoga neapolitana DSM 4359,... 47 2e-04
(Q86KF5) RecName: Full=Small heat shock protein hspG9; &AC11696... 47 3e-04
CP000702_535(CP000702|pid:none) Thermotoga petrophila RKU-1, com... 47 3e-04
(Q8MPA7) RecName: Full=Small heat shock protein hspG5; &AC11695... 47 4e-04
AF106330_2(AF106330|pid:none) Thermotoga maritima heat shock pro... 47 4e-04
CP000422_1553(CP000422|pid:none) Pediococcus pentosaceus ATCC 25... 47 4e-04
BA000040_7961(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 46 5e-04
CP001337_3648(CP001337|pid:none) Chloroflexus aggregans DSM 9485... 46 6e-04
(Q551G1) RecName: Full=Small heat shock protein hspG4; 45 0.001
(O30851) RecName: Full=Heat shock protein HSP.16.4; &AF019139_2... 45 0.001
AP009385_839(AP009385|pid:none) Burkholderia multivorans ATCC 17... 44 0.002
CP000390_2260(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 44 0.002
CP001097_734(CP001097|pid:none) Chlorobium limicola DSM 245, com... 44 0.002
AE006470_1943(AE006470|pid:none) Chlorobium tepidum TLS, complet... 44 0.002
CP001393_1441(CP001393|pid:none) Anaerocellum thermophilum DSM 6... 44 0.002
CP001192_765(CP001192|pid:none) Rhizobium leguminosarum bv. trif... 44 0.002
CP000679_1976(CP000679|pid:none) Caldicellulosiruptor saccharoly... 44 0.002
EF564599_3(EF564599|pid:none) Rickettsia monacensis strain IrR/M... 44 0.003
AP009049_3443(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 44 0.003
CP000859_2516(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 43 0.004
CP000227_2096(CP000227|pid:none) Bacillus cereus Q1, complete ge... 43 0.004
CP001176_2104(CP001176|pid:none) Bacillus cereus B4264, complete... 43 0.004
CP001228_13(CP001228|pid:none) Rickettsia peacockii str. Rustic ... 43 0.005
CP001099_253(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 43 0.005
CP001069_613(CP001069|pid:none) Ralstonia pickettii 12J chromoso... 43 0.005
CP001110_707(CP001110|pid:none) Pelodictyon phaeoclathratiforme ... 42 0.007
CT573073_923(CT573073|pid:none) Kuenenia stuttgartiensis genome ... 42 0.007
CP001089_2764(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 42 0.007
AL954747_2075(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 42 0.009
CP000049_429(CP000049|pid:none) Borrelia turicatae 91E135, compl... 42 0.012
CP000656_1789(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 42 0.012
(Q550E9) RecName: Full=Small heat shock protein hspG8; 42 0.012
BA000012_1849(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 42 0.012
CP000716_1100(CP000716|pid:none) Thermosipho melanesiensis BI429... 42 0.012
CP000463_2563(CP000463|pid:none) Rhodopseudomonas palustris BisA... 42 0.012
AC116967_4(AC116967|pid:none) Dictyostelium discoideum chromosom... 41 0.015
CP000764_1593(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 41 0.015
CP000001_2016(CP000001|pid:none) Bacillus cereus E33L, complete ... 41 0.015
AJ276218_1(AJ276218|pid:none) Stigmatella aurantiaca hspA gene f... 41 0.015
CP000112_1734(CP000112|pid:none) Desulfovibrio desulfuricans G20... 41 0.020
CP000159_2301(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 41 0.020
AL591985_809(AL591985|pid:none) Sinorhizobium meliloti 1021 plas... 41 0.020
CP000514_51(CP000514|pid:none) Marinobacter aquaeolei VT8, compl... 41 0.020
CP001110_1999(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 41 0.020
AF177167_2(AF177167|pid:none) Streptococcus thermophilus plasmid... 41 0.020
CP000512_1265(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 41 0.020
(Q06823) RecName: Full=Spore protein SP21; &A49942(A49942;S2766... 41 0.020
CP000511_4864(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 40 0.026
CP000153_512(CP000153|pid:none) Sulfurimonas denitrificans DSM 1... 40 0.026
CP000096_613(CP000096|pid:none) Pelodictyon luteolum DSM 273, co... 40 0.026
(O74984) RecName: Full=Heat shock protein homolog C338.06c; &AL... 40 0.026
CP000320_203(CP000320|pid:none) Nitrobacter hamburgensis X14 pla... 40 0.026
BX571856_2429(BX571856|pid:none) Staphylococcus aureus subsp. au... 40 0.026
CP000975_1827(CP000975|pid:none) Methylacidiphilum infernorum V4... 40 0.026
(Q550E3) RecName: Full=Small heat shock protein hspG11; 40 0.026
CP001322_1966(CP001322|pid:none) Desulfatibacillum alkenivorans ... 40 0.026
AE017282_2403(AE017282|pid:none) Methylococcus capsulatus str. B... 40 0.026
CP001098_1447(CP001098|pid:none) Halothermothrix orenii H 168, c... 40 0.026
AE016877_2070(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 40 0.026
AB008931_1(AB008931|pid:none) Arabidopsis thaliana mRNA for 26-k... 40 0.034
AM236080_1890(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 40 0.034
AC007592_19(AC007592|pid:none) Genomic sequence for Arabidopsis ... 40 0.034
AF177166_1(AF177166|pid:none) Streptococcus thermophilus plasmid... 40 0.034
CP001087_3222(CP001087|pid:none) Desulfobacterium autotrophicum ... 40 0.034
AM295250_1873(AM295250|pid:none) Staphylococcus carnosus subsp. ... 40 0.034
CP000874_1250(CP000874|pid:none) Rhizobium sp. NGR234 plasmid pN... 40 0.034
CP000361_2213(CP000361|pid:none) Arcobacter butzleri RM4018, com... 40 0.034
AY086137_1(AY086137|pid:none) Arabidopsis thaliana clone 21735 m... 40 0.034
(P80485) Acid shock protein (T786P28D). &AY250830_1(AY250830|pi... 40 0.034
CP000481_606(CP000481|pid:none) Acidothermus cellulolyticus 11B ... 40 0.034
AP008957_1245(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 40 0.045
CP000423_661(CP000423|pid:none) Lactobacillus casei ATCC 334, co... 40 0.045
CP000115_2105(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 40 0.045
CP000450_1547(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 39 0.058
CP000103_1750(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 39 0.058
CP000089_628(CP000089|pid:none) Dechloromonas aromatica RCB, com... 39 0.058
AE017354_2445(AE017354|pid:none) Legionella pneumophila subsp. p... 39 0.076
CP001357_2020(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 39 0.076
AJ003064_3(AJ003064|pid:none) Bradyrhizobium japonicum small hea... 39 0.076
CR628337_2424(CR628337|pid:none) Legionella pneumophila str. Len... 39 0.076
CP000485_1912(CP000485|pid:none) Bacillus thuringiensis str. Al ... 39 0.076
CP001358_2256(CP001358|pid:none) Desulfovibrio desulfuricans sub... 39 0.076
CR628336_2564(CR628336|pid:none) Legionella pneumophila str. Par... 39 0.076
CP000607_1140(CP000607|pid:none) Chlorobium phaeovibrioides DSM ... 39 0.076
AE015927_2219(AE015927|pid:none) Clostridium tetani E88, complet... 39 0.076
AM980831_1(AM980831|pid:none) Exiguobacterium arabatum pEspA pla... 39 0.076
EU370687_2(EU370687|pid:none) Enterococcus faecium strain JH95 p... 39 0.100
CP000252_51(CP000252|pid:none) Syntrophus aciditrophicus SB, com... 39 0.100
AF475907_1(AF475907|pid:none) Exophiala dermatitidis HSP30 (hsp3... 38 0.13
AP009178_1628(AP009178|pid:none) Nitratiruptor sp. SB155-2 genom... 38 0.13
CP000544_2157(CP000544|pid:none) Halorhodospira halophila SL1, c... 38 0.13
AP007255_2897(AP007255|pid:none) Magnetospirillum magneticum AMB... 38 0.13
CP000300_1838(CP000300|pid:none) Methanococcoides burtonii DSM 6... 38 0.17
CP000115_2922(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 38 0.17
AM999887_613(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 38 0.17
CP000411_263(CP000411|pid:none) Oenococcus oeni PSU-1, complete ... 38 0.17
CP001336_1671(CP001336|pid:none) Desulfitobacterium hafniense DC... 38 0.17
AJ242476_2(AJ242476|pid:none) Streptococcus thermophilus repA ge... 37 0.22
CP000685_3726(CP000685|pid:none) Flavobacterium johnsoniae UW101... 37 0.22
CP000478_2342(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 37 0.22
AC116550_9(AC116550|pid:none) Dictyostelium discoideum chromosom... 37 0.22
CP000382_25(CP000382|pid:none) Clostridium novyi NT, complete ge... 37 0.22
CP000033_192(CP000033|pid:none) Lactobacillus acidophilus NCFM, ... 37 0.22
AP008230_3667(AP008230|pid:none) Desulfitobacterium hafniense Y5... 37 0.22
CP000141_2341(CP000141|pid:none) Carboxydothermus hydrogenoforma... 37 0.22
CP000721_4946(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 37 0.22
AF197942_1(AF197942|pid:none) Funaria hygrometrica chloroplast-l... 37 0.22
CP001130_730(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co... 37 0.29
CP001581_1783(CP001581|pid:none) Clostridium botulinum A2 str. K... 37 0.29
CP000061_17(CP000061|pid:none) Aster yellows witches'-broom phyt... 37 0.29
CP000412_214(CP000412|pid:none) Lactobacillus delbrueckii subsp.... 37 0.38
CP001322_3661(CP001322|pid:none) Desulfatibacillum alkenivorans ... 37 0.38
EF564599_4(EF564599|pid:none) Rickettsia monacensis strain IrR/M... 37 0.38
CP001108_1923(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 37 0.38
CP000301_2434(CP000301|pid:none) Rhodopseudomonas palustris BisB... 37 0.38
AE016828_1000(AE016828|pid:none) Coxiella burnetii RSA 493, comp... 36 0.49
(Q53595) RecName: Full=18 kDa heat shock protein; AltName: Full=... 36 0.49
CP000510_1712(CP000510|pid:none) Psychromonas ingrahamii 37, com... 36 0.49
CP001230_270(CP001230|pid:none) Persephonella marina EX-H1, comp... 36 0.49
AM412317_1745(AM412317|pid:none) Clostridium botulinum A str. AT... 36 0.49
AC008016_22(AC008016|pid:none) Arabidopsis thaliana chromosome 1... 36 0.65
CP000686_1875(CP000686|pid:none) Roseiflexus sp. RS-1, complete ... 36 0.65
Z71782_1(Z71782|pid:none) L.delbrueckii pepG and pepW genes and ... 36 0.65
CP001098_1908(CP001098|pid:none) Halothermothrix orenii H 168, c... 36 0.65
CT573213_1837(CT573213|pid:none) Frankia alni str. ACN14A chromo... 36 0.65
CP000728_813(CP000728|pid:none) Clostridium botulinum F str. Lan... 35 0.84
AE017180_2394(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 35 0.84
CP000777_1754(CP000777|pid:none) Leptospira biflexa serovar Pato... 35 0.84
CT573071_260(CT573071|pid:none) Kuenenia stuttgartiensis genome ... 35 0.84
EU016611_1(EU016611|pid:none) Uncultured Group I marine crenarch... 35 0.84
CP000517_176(CP000517|pid:none) Lactobacillus helveticus DPC 457... 35 0.84
FM177140_2924(FM177140|pid:none) Lactobacillus casei BL23 comple... 35 0.84
CP000448_558(CP000448|pid:none) Syntrophomonas wolfei subsp. wol... 35 0.84
AM412317_830(AM412317|pid:none) Clostridium botulinum A str. ATC... 35 0.84
CR382129_125(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 35 1.1
CP001029_3631(CP001029|pid:none) Methylobacterium populi BJ001, ... 35 1.1
CP001197_2933(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 35 1.1
CP000127_2629(CP000127|pid:none) Nitrosococcus oceani ATCC 19707... 35 1.1
CP000423_2648(CP000423|pid:none) Lactobacillus casei ATCC 334, c... 35 1.1
CP001078_2395(CP001078|pid:none) Clostridium botulinum E3 str. A... 35 1.1
CP001612_293(CP001612|pid:none) Rickettsia africae ESF-5, comple... 35 1.1
CP000109_2019(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 35 1.1
CP000683_274(CP000683|pid:none) Rickettsia massiliae MTU5, compl... 35 1.4
CP001124_598(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 35 1.4
CT573071_1754(CT573071|pid:none) Kuenenia stuttgartiensis genome... 35 1.4
CP000048_429(CP000048|pid:none) Borrelia hermsii DAH, complete g... 35 1.4
CP001097_2075(CP001097|pid:none) Chlorobium limicola DSM 245, co... 35 1.4
CP000698_684(CP000698|pid:none) Geobacter uraniireducens Rf4, co... 35 1.4
CP000776_575(CP000776|pid:none) Campylobacter hominis ATCC BAA-3... 35 1.4
CP001001_4061(CP001001|pid:none) Methylobacterium radiotolerans ... 35 1.4
CP000383_231(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 35 1.4
CP000481_1470(CP000481|pid:none) Acidothermus cellulolyticus 11B... 35 1.4
CP000939_826(CP000939|pid:none) Clostridium botulinum B1 str. Ok... 34 1.9
CP000099_839(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 34 1.9
CP000943_3683(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 34 1.9
CP001322_2320(CP001322|pid:none) Desulfatibacillum alkenivorans ... 34 1.9
CP001083_1851(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 34 1.9
CP000860_1425(CP000860|pid:none) Candidatus Desulforudis audaxvi... 34 1.9
CT573073_312(CT573073|pid:none) Kuenenia stuttgartiensis genome ... 34 1.9
CP000962_1746(CP000962|pid:none) Clostridium botulinum A3 str. L... 34 1.9
CR382129_124(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 34 1.9
AP008934_503(AP008934|pid:none) Staphylococcus saprophyticus sub... 34 2.5
AP009385_1166(AP009385|pid:none) Burkholderia multivorans ATCC 1... 34 2.5
CP000494_7330(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 34 2.5
CP001349_2278(CP001349|pid:none) Methylobacterium nodulans ORS 2... 34 2.5
CP000494_7329(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 33 3.2
CP000252_1719(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 33 3.2
CU207366_2268(CU207366|pid:none) Gramella forsetii KT0803 comple... 33 3.2
CP000159_2274(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 33 3.2
BA000030_462(BA000030|pid:none) Streptomyces avermitilis MA-4680... 33 4.2
CP000760_6(CP000760|pid:none) Ochrobactrum anthropi ATCC 49188 p... 33 4.2
CP001101_2126(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 33 4.2
CP001083_801(CP001083|pid:none) Clostridium botulinum Ba4 str. 6... 33 4.2
CP000088_1524(CP000088|pid:none) Thermobifida fusca YX, complete... 33 4.2
CP000682_1070(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 33 5.5
CP000393_2678(CP000393|pid:none) Trichodesmium erythraeum IMS101... 33 5.5
AP007281_1239(AP007281|pid:none) Lactobacillus reuteri JCM 1112 ... 33 5.5
BA000022_418(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA, ... 32 7.1
CP000766_394(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 32 7.1
CT573071_262(CT573071|pid:none) Kuenenia stuttgartiensis genome ... 32 7.1
(Q4UJB0) RecName: Full=Small heat shock protein C3; &CP000054_5... 32 7.1
AM778950_86(AM778950|pid:none) Microcystis aeruginosa PCC 7806 g... 32 9.3
CP000685_4381(CP000685|pid:none) Flavobacterium johnsoniae UW101... 32 9.3
CP000847_367(CP000847|pid:none) Rickettsia akari str. Hartford, ... 32 9.3
CP000393_2677(CP000393|pid:none) Trichodesmium erythraeum IMS101... 32 9.3
EF147121_1(EF147121|pid:none) Populus trichocarpa clone WS01227_... 32 9.3
CP000142_396(CP000142|pid:none) Pelobacter carbinolicus DSM 2380... 32 9.3
CP001341_2996(CP001341|pid:none) Arthrobacter chlorophenolicus A... 32 9.3
DQ975268_1(DQ975268|pid:none) Gossypium arboreum alpha-crystalli... 32 9.3

>(Q86I25) RecName: Full=Small heat shock protein hspG1;
&AC116305_73(AC116305|pid:none)
Length = 182

Score = 61.2 bits (147), Expect = 1e-08
Identities = 38/152 (25%), Positives = 76/152 (50%), Gaps = 10/152 (6%)
Frame = +1

Query: 55 YVNCNKFNLIKESIQNEKLDLESNQNQKPKIYPLIEINESNDSYIIEVEIPGIPINQIKI 234
Y +C + +K + N + +N ++ I P +++ ++++ IIE E+ GI + I+I
Sbjct: 21 YYSCKR---LKSNNNNNNNNFRNNSIKRIDIIPSMDVTITDNNIIIETELAGISKDNIEI 77

Query: 235 SIKNFILTL----------KIFKTXXXXXXXXXXXXXXXXXSKEKYKNIFSDRKFGVFER 384
IK+ ILT+ K + +K++++ S+R FG F+R
Sbjct: 78 DIKDSILTIQGEKKINNNYKQQQQQHSDKTKTNNELPLIEENKKEFRKYLSERSFGNFKR 137

Query: 385 NINFQKVKDKIIISNITSNLDNGILTLKLNKK 480
++ + ++ +S I SN +NG+L + +NKK
Sbjct: 138 CLDLTSILYQLDLSTIKSNFENGLLIITINKK 169

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 452,482,187
Number of extensions: 6330251
Number of successful extensions: 22781
Number of sequences better than 10.0: 210
Number of HSP's gapped: 22734
Number of HSP's successfully gapped: 221
Length of query: 172
Length of database: 1,040,966,779
Length adjustment: 119
Effective length of query: 53
Effective length of database: 659,656,864
Effective search space: 34961813792
Effective search space used: 34961813792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.88 gvh: 0.30 alm: 0.45 top: 0.27 tms: 0.00 mit: 0.39 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: mitochondrial
20.0 %: cytoplasmic
4.0 %: extracellular, including cell wall
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for Contig-U06999-1 is nuc

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0