Contig-U01439-1
Contig ID Contig-U01439-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01439-1 (Contig-U01439-1Q) /CSM_Contig/Contig-U01439-1Q.Seq.d
ATCATTTTAGCGCAAAAATGAACAACACTTCATCATCATCAACAACAAAG
GATGGAATTTCAACAAAACCTCCAATTCACACTGCCGGAAAAGTTGAAAT
TCATCAAGAGACATCAACAATTATGAAAGCAAGATTAATTCAACACATAT
TACAAACATATTATTTATTAAATTTTATATTTTTACTTGCATATCCAATT
TTAAGGTTATCAGGTCTAATTTTAAAACCAAAGAATGAATTAATGATTTT
ATATGTATCAGGATTTATGGTTGTATTAAAAATATTAAAGAATAAAAATA
TTGATCAAATTTTAACAGGTATTATATTCACA----------AAGGTATT
AATTTTGGTAAAATTGATATTGGAAGATGGAAATNAATGGCTTATGAATA
TGATANAGCTGATTCAGTATTAAGTAAACAAATACCATTAATTATATNAT
TTAAAAATGGTGTTGAAGNATTTAGAATGCCATATAGAAAGAATGAATTT
AAAATGCCATATGACAAGAAAACTCCAAAAGATGATAAATTATTTGAACC
ATGTAATCTTTCCTATGATAATATTAGACTTTATTTTAATTTAGATACAT
TATTATCTCAAGTTAAACCATCCTTAACAAATCAAAATCAAAATCAAAAT
AATAATAATAATAATAATAAGAATGGTAACTCTAATAAAAATACTAAAAA
GAATAGATAGAGGTTGTTATGAATTAAAAAAAAAAAAAAAAAAAA

Gap gap included
Contig length 735
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4412440
End point 4411716
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 3
Link to clone list U01439
List of clone(s)

est1=SLJ683F,1,333
est2=SSB606Z,334,737
est3=SLJ683Z,461,716
Translated Amino Acid sequence
HFSAKMNNTSSSSTTKDGISTKPPIHTAGKVEIHQETSTIMKARLIQHILQTYYLLNFIF
LLAYPILRLSGLILKPKNELMILYVSGFMVVLKILKNKNIDQILTGIIFT---

---GINFGKIDIGRWKXMAYEYDXADSVLSKQIPLIIXFKNGVEXFRMPYRKNEFKMPYD
KKTPKDDKLFEPCNLSYDNIRLYFNLDTLLSQVKPSLTNQNQNQNNNNNNNKNGNSNKNT
KKNR*rll*ikkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
iilaqk*ttlhhhqqqrmefqqnlqftlpeklkfikrhqql*kqd*fntyykhiiy*ily
fylhiqf*gyqv*f*nqrmn**fymyqdlwly*ky*rikilikf*qvlys---

---kvlilvkliledgnxwlmnmixliqy*vnkyh*lyxlkmvlkxlechiermnlkchm
trklqkminylnhvifpmiildfili*ihyylklnhp*qikikikiiiiiiirmvtliki
lkridrgcyelkkkkkk

Frame B:
sf*rkneqhfiiinnkgwnfnktsnshcrks*nssrdinnyeskinsthitnilfikfyi
ftcisnfkvirsnfktke*indficiriygciknike*ky*snfnryyih---

---ry*fw*n*ywkmexngl*i*xs*fsik*tntinyxi*kwc*xi*nai*ke*i*nai*
qenskr**ii*tm*sfl**y*tlf*fryiiiss*tilnksksksk*******ew*l**ky
*ke*ievvmn*kkkkkk

Frame C:
HFSAKMNNTSSSSTTKDGISTKPPIHTAGKVEIHQETSTIMKARLIQHILQTYYLLNFIF
LLAYPILRLSGLILKPKNELMILYVSGFMVVLKILKNKNIDQILTGIIFT---

---GINFGKIDIGRWKXMAYEYDXADSVLSKQIPLIIXFKNGVEXFRMPYRKNEFKMPYD
KKTPKDDKLFEPCNLSYDNIRLYFNLDTLLSQVKPSLTNQNQNQNNNNNNNKNGNSNKNT
KKNR*rll*ikkkkkk

own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01439-1 (Contig-U01439-1Q)
/CSM_Contig/Contig-U01439-1Q.Seq.d
(745 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01439-1 (Contig-U01439-1Q) /CSM_Contig/Conti... 1185 0.0
Contig-U10395-1 (Contig-U10395-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U06879-1 (Contig-U06879-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U05396-1 (Contig-U05396-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U12472-1 (Contig-U12472-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U12356-1 (Contig-U12356-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U11983-1 (Contig-U11983-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U11963-1 (Contig-U11963-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti... 38 0.018

>Contig-U01439-1 (Contig-U01439-1Q) /CSM_Contig/Contig-U01439-1Q.Seq.d
Length = 745

Score = 1185 bits (598), Expect = 0.0
Identities = 640/640 (100%)
Strand = Plus / Plus


Query: 1 atcattttagcgcaaaaatgaacaacacttcatcatcatcaacaacaaaggatggaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcattttagcgcaaaaatgaacaacacttcatcatcatcaacaacaaaggatggaattt 60


Query: 61 caacaaaacctccaattcacactgccggaaaagttgaaattcatcaagagacatcaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caacaaaacctccaattcacactgccggaaaagttgaaattcatcaagagacatcaacaa 120


Query: 121 ttatgaaagcaagattaattcaacacatattacaaacatattatttattaaattttatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttatgaaagcaagattaattcaacacatattacaaacatattatttattaaattttatat 180


Query: 181 ttttacttgcatatccaattttaaggttatcaggtctaattttaaaaccaaagaatgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttacttgcatatccaattttaaggttatcaggtctaattttaaaaccaaagaatgaat 240


Query: 241 taatgattttatatgtatcaggatttatggttgtattaaaaatattaaagaataaaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taatgattttatatgtatcaggatttatggttgtattaaaaatattaaagaataaaaata 300


Query: 301 ttgatcaaattttaacaggtattatattcacannnnnnnnnnaaggtattaattttggta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgatcaaattttaacaggtattatattcacannnnnnnnnnaaggtattaattttggta 360


Query: 361 aaattgatattggaagatggaaatnaatggcttatgaatatgatanagctgattcagtat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaattgatattggaagatggaaatnaatggcttatgaatatgatanagctgattcagtat 420


Query: 421 taagtaaacaaataccattaattatatnatttaaaaatggtgttgaagnatttagaatgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taagtaaacaaataccattaattatatnatttaaaaatggtgttgaagnatttagaatgc 480


Query: 481 catatagaaagaatgaatttaaaatgccatatgacaagaaaactccaaaagatgataaat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catatagaaagaatgaatttaaaatgccatatgacaagaaaactccaaaagatgataaat 540


Query: 541 tatttgaaccatgtaatctttcctatgataatattagactttattttaatttagatacat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tatttgaaccatgtaatctttcctatgataatattagactttattttaatttagatacat 600


Query: 601 tattatctcaagttaaaccatccttaacaaatcaaaatca 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tattatctcaagttaaaccatccttaacaaatcaaaatca 640


Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 701 gaatagatagaggttgttatgaatt 725
|||||||||||||||||||||||||
Sbjct: 701 gaatagatagaggttgttatgaatt 725


>Contig-U10395-1 (Contig-U10395-1Q) /CSM_Contig/Contig-U10395-1Q.Seq.d
Length = 1199

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 29 ttcatcatcatcaacaacaaa 49
|||||||||||||||||||||
Sbjct: 687 ttcatcatcatcaacaacaaa 707


Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 56 aatttcaacaaaacc 70
|||||||||||||||
Sbjct: 768 aatttcaacaaaacc 782


>Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Contig-U12528-1Q.Seq.d
Length = 1995

Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 29 ttcatcatcatcaacaacaa 48
||||||||||||||||||||
Sbjct: 1087 ttcatcatcatcaacaacaa 1106


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,135
Number of Sequences: 8361
Number of extensions: 24135
Number of successful extensions: 3379
Number of sequences better than 10.0: 452
length of query: 745
length of database: 7,895,291
effective HSP length: 16
effective length of query: 729
effective length of database: 7,761,515
effective search space: 5658144435
effective search space used: 5658144435
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.27
Homology vs DNA
Query= Contig-U01439-1 (Contig-U01439-1Q) /CSM_Contig/Contig-U01439-1Q.Seq.d
(745 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU060421) Dictyostelium discoideum slug cDNA, clone SLJ683. 658 0.0 1
(AU037203) Dictyostelium discoideum slug cDNA, clone SSB606. 523 e-146 2
(AU053786) Dictyostelium discoideum slug cDNA, clone SLJ683. 307 2e-81 2
(AL844506) Plasmodium falciparum chromosome 7. 38 1e-04 15
(AC114265) Dictyostelium discoideum chromosome 2 map 4520461... 40 5e-04 5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 44 0.002 12
(CZ928293) 245228 Tomato EcoRI BAC Library Solanum lycopersi... 56 0.002 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 0.002 13
(AC116955) Dictyostelium discoideum chromosome 2 map 5455881... 38 0.003 6
(AC212848) Populus trichocarpa clone POP043-G18, complete se... 48 0.003 4
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 40 0.004 15
(CU459030) Medicago truncatula chromosome 5 clone mth2-20d14... 44 0.005 5
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 42 0.006 14
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 42 0.006 14
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 0.008 10
(AE017308) Mycoplasma mobile 163K complete genome. 34 0.009 15
(DQ302100) Vanhornia eucnemidarum mitochondrion, complete ge... 34 0.016 5
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 38 0.017 5
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 0.025 13
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 42 0.027 11
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.029 13
(AL845543) Mouse DNA sequence from clone RP23-257O6 on chrom... 52 0.031 1
(AC121530) Mus musculus clone RP24-376O15, WORKING DRAFT SEQ... 52 0.031 1
(AP009874) Lotus japonicus genomic DNA, chromosome 4, clone:... 34 0.038 7
(DU918671) 337890 Tomato EcoRI BAC Library Solanum lycopersi... 36 0.049 3
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 0.053 12
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 0.061 15
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 38 0.080 16
(AC123575) Medicago truncatula clone mth1-31p6, complete seq... 40 0.096 5
(AC154881) Mus musculus chromosome 15, clone RP24-259H19, co... 42 0.11 7
(AC169184) Glycine max clone gmw1-5g16, complete sequence. 50 0.12 1
(FD939355) RS1GD30TF RS1(AR) Raphanus sativus var. oleiformi... 50 0.12 1
(AY573135) Sphaerocera curvipes 16S ribosomal RNA gene, part... 48 0.13 2
(AC151154) Bos taurus clone CH240-463J15, WORKING DRAFT SEQU... 40 0.13 4
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 42 0.26 9
(EI368865) POTAQ36TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 0.27 2
(AP006365) Lotus japonicus genomic DNA, chromosome 1, clone:... 38 0.28 2
(AP009251) Lotus japonicus genomic DNA, chromosome 1, clone:... 38 0.29 2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 0.35 8
(BD428942) Method and nucleic acids for pharmacogenomic meth... 42 0.35 3
(AX348421) Sequence 116 from Patent WO0202806. 42 0.35 3
(AX346531) Sequence 1602 from Patent WO0200928. 42 0.35 3
(EY329629) CAWY2862.fwd CAWY Helobdella robusta Subtracted E... 44 0.36 2
(AC095680) Rattus norvegicus clone CH230-8O7, WORKING DRAFT ... 42 0.36 4
(CU467918) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.37 7
(BX324218) Zebrafish DNA sequence from clone CH211-236L6 in ... 38 0.38 6
(AL592202) Zebrafish DNA sequence from clone XX-DZ105N24 Con... 48 0.49 1
(AM440359) Vitis vinifera contig VV78X244595.2, whole genome... 48 0.49 1
(AC214592) Populus trichocarpa clone POP002-I03, complete se... 48 0.49 1
(DD010735) Diagnosis of known genetic Parameters within the ... 48 0.49 1
(AX344556) Sequence 7 from Patent WO0200932. 48 0.49 1
(AC135125) Rattus norvegicus clone CH230-265D13, *** SEQUENC... 48 0.49 1
(AC107117) Rattus norvegicus clone CH230-12M16, *** SEQUENCI... 48 0.49 1
(AC181870) Strongylocentrotus purpuratus clone R3-1019K19, W... 48 0.49 1
(AC180210) Strongylocentrotus purpuratus clone R3-3D11, WORK... 48 0.49 1
(AC179364) Strongylocentrotus purpuratus clone R3-1102B4, WO... 48 0.49 1
(AC178238) Strongylocentrotus purpuratus clone R3-3086D15, W... 48 0.49 1
(ED523969) KBrB112G19R KBrB, Brassica rapa BamHI BAC library... 48 0.49 1
(ED412072) AUAC-aar91g08.b1 Ascaris suum whole genome shotgu... 48 0.49 1
(ED238638) AUAC-aay38e06.b1 Ascaris suum whole genome shotgu... 48 0.49 1
(DH150703) Oryzias latipes Fosmid clone:GOLWFno419_j24, forw... 48 0.49 1
(CL054291) CH216-79A11_RM1.1 CH216 Xenopus (Silurana) tropic... 48 0.49 1
(AG278911) Mus musculus molossinus DNA, clone:MSMg01-049H11.... 48 0.49 1
(EG550346) MM05P24_XP Sugar Beet germination cDNA library Be... 48 0.49 1
(EE149636) AMFL-P13_H08 Adult Argas monolakensis salivary gl... 48 0.49 1
(DC231601) Plasmodium berghei strain ANKA cDNA clone:SG02240... 48 0.49 1
(BB974661) Plasmodium berghei str. ANKA cDNA clone: OK004473... 48 0.49 1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.52 9
(CU655869) H.numata DNA sequence from clone AEHN-38G4. 36 0.53 5
(AC114160) Rattus norvegicus clone CH230-163F18, *** SEQUENC... 38 0.64 4
(AL732500) Mouse DNA sequence from clone RP23-208J6 on chrom... 40 0.69 6
(AZ438908) 1M0229D14F Mouse 10kb plasmid UUGC1M library Mus ... 38 0.69 2
(DQ021446) Daktulosphaira vitifoliae mitochondrion, partial ... 34 0.70 5
(EF984225) Mus musculus C57BL/6N IST13124F5HMF1 gene trap em... 38 0.71 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.72 15
(DJ386607) Diagnosis of Diseases Associated with Metastasis. 44 0.75 2
(AX348973) Sequence 431 from Patent WO0202807. 44 0.75 2
(AX281403) Sequence 67 from Patent WO0177376. 44 0.75 2
(CR786562) Zebrafish DNA sequence from clone CH211-244H7 in ... 36 0.77 4
(AC160311) Bos taurus clone CH240-81B19, WORKING DRAFT SEQUE... 42 0.78 3
(CP000728) Clostridium botulinum F str. Langeland, complete ... 36 0.78 13
(AC114638) Mus musculus chromosome 5, clone RP24-123E4, comp... 38 0.79 6
(AF303741) Chilo iridescent virus complete genome. 32 0.80 9
(Z11874) Euglena gracilis Z chloroplast DNA. 42 0.83 3
(BZ934229) CH240_90A9.TV CHORI-240 Bos taurus genomic clone ... 40 0.86 2
(AC232636) Solanum lycopersicum chromosome 7 clone C07SLm008... 40 0.87 4
(AC151530) Mus musculus BAC clone RP24-330K6 from 13, comple... 44 0.91 4
(AC166567) Spironucleus vortens clone JGIBAWF-9N7, WORKING D... 40 0.93 2
(EK353706) 1095468277769 Global-Ocean-Sampling_GS-31-01-01-1... 30 0.93 3
(BD453066) Diagnosis of Diseases Associated with tumor suppr... 44 0.93 6
(AX251545) Sequence 513 from Patent WO0168912. 44 0.93 6
(CU469496) Zebrafish DNA sequence from clone CH73-113C9 in l... 40 0.95 5
(AZ793498) 2M0046J13R Mouse 10kb plasmid UUGC1M library Mus ... 38 0.98 2
(DX829331) ZMMBLb0008O02.f ZMMBLb Zea mays genomic clone ZMM... 38 1.0 3
(EY314350) CAWX25461.rev CAWX Helobdella robusta Primary Ear... 44 1.0 2
(CU326400) S.lycopersicum DNA sequence from clone SL_MboI-39... 34 1.0 2
(AZ316394) 1M0034E05R Mouse 10kb plasmid UUGC1M library Mus ... 38 1.0 2
(AM433239) Vitis vinifera contig VV78X034089.4, whole genome... 40 1.0 3
(EY315671) CAWX26187.rev CAWX Helobdella robusta Primary Ear... 44 1.1 2
(EY314514) CAWX25550.rev CAWX Helobdella robusta Primary Ear... 44 1.1 2
(EY316106) CAWX26430.rev CAWX Helobdella robusta Primary Ear... 44 1.1 2
(EY343020) CAWZ12252.rev CAWZ Helobdella robusta Primary Lat... 44 1.1 2
(AC146630) Medicago truncatula clone mth2-7f22, complete seq... 34 1.1 5
(EY298500) CAWX13946.rev CAWX Helobdella robusta Primary Ear... 44 1.1 2
(EY321682) CAWX8035.rev CAWX Helobdella robusta Primary Earl... 44 1.1 2
(AM487494) Vitis vinifera contig VV78X197132.9, whole genome... 36 1.2 2
(EY320213) CAWX7276.rev CAWX Helobdella robusta Primary Earl... 44 1.2 2
(EY299964) CAWX14760.rev CAWX Helobdella robusta Primary Ear... 44 1.2 2
(EY298471) CAWX13930.rev CAWX Helobdella robusta Primary Ear... 44 1.2 2
(EY309902) CAWX21850.rev CAWX Helobdella robusta Primary Ear... 44 1.2 2
(EY308595) CAWX21118.rev CAWX Helobdella robusta Primary Ear... 44 1.2 2
(BD061520) Genome DNA of symbiotic bacteria of aphid. 36 1.2 12
(AR409405) Sequence 1 from patent US 6632935. 36 1.2 12
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 36 1.2 12
(CU062484) Zebrafish DNA sequence from clone CH73-329L6 in l... 40 1.2 4
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 36 1.2 12
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 40 1.2 9
(AE002130) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 42 1.2 3
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 32 1.2 8
(EY301624) CAWX15687.rev CAWX Helobdella robusta Primary Ear... 44 1.2 2
(EY300076) CAWX14819.fwd CAWX Helobdella robusta Primary Ear... 44 1.3 2
(EH073071) PMDAV52TR Perkinsus marinus small insert cDNA lib... 40 1.3 2
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 34 1.3 12
(DU886788) 391560 Tomato HindIII BAC Library Solanum lycoper... 34 1.3 2
(DU883597) 392328 Tomato HindIII BAC Library Solanum lycoper... 34 1.3 2
(FH925577) CHO_NF2028xp21f1.ab1 CHO_NF2 Nicotiana tabacum ge... 36 1.3 2
(BB981765) Plasmodium berghei str. ANKA cDNA clone: OK012068... 34 1.3 2
(AZ522293) 205PbA08 Pb MBN #21 Plasmodium berghei genomic 3'... 34 1.3 2
(DC206552) Plasmodium berghei strain ANKA cDNA clone:MG00642... 34 1.4 2
(DX831246) ZMMBLb0011K04.r ZMMBLb Zea mays genomic clone ZMM... 38 1.4 3
(FG289417) 1108793302147 New World Screwworm Egg 9261 ESTs C... 38 1.4 2
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 36 1.4 13
(FG295674) 1108770739838 New World Screwworm Larvae 9387 EST... 38 1.4 2
(AC166170) Mus musculus BAC clone RP23-174N23 from chromosom... 38 1.5 6
(AF295546) Malawimonas jakobiformis mitochondrial DNA, compl... 34 1.5 7
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet... 42 1.5 15
(EJ656036) 1092955006628 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.5 3
(FG108140) PRAG-aab68h07.b1 Sand_fly_EST_Normalized Phleboto... 42 1.6 2
(AC126787) Medicago truncatula clone mth2-11c8, complete seq... 40 1.6 6
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 30 1.6 11
(AM429723) Vitis vinifera contig VV78X097837.21, whole genom... 38 1.7 4
(AC129384) Rattus norvegicus clone CH230-89C13, *** SEQUENCI... 38 1.7 6
(AF066906) Vespa crabro 16S ribosomal RNA gene, mitochondria... 38 1.7 2
(DX832673) ZMMBLb0013K15.f ZMMBLb Zea mays genomic clone ZMM... 38 1.8 3
(CP000048) Borrelia hermsii DAH, complete genome. 36 1.9 14
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 1.9 10
(AC168512) Strongylocentrotus purpuratus clone R3-3108M11, W... 40 1.9 3
(CR974475) Zebrafish DNA sequence from clone CH73-27E22 in l... 46 1.9 1
(AC122418) Mus musculus BAC clone RP24-159E6 from chromosome... 46 1.9 1
(AC099692) Mus musculus chromosome 13, clone RP23-198N22, co... 46 1.9 1
(AP007172) Aspergillus oryzae RIB40 genomic DNA, SC206. 46 1.9 1
(AM458957) Vitis vinifera contig VV78X255011.8, whole genome... 46 1.9 1
(AR548289) Sequence 3420 from patent US 6747137. 46 1.9 1
(EU494424) Leucophenga albofasciata voucher 109359 16S ribos... 46 1.9 1
(AJ331207) Homo sapiens genomic sequence surrounding NotI si... 46 1.9 1
(AC079917) Homo sapiens chromosome 11, clone RP11-55I22, com... 46 1.9 1
(AC151863) Colobus guereza clone CH272-119O16, WORKING DRAFT... 46 1.9 1
(AC130020) Rattus norvegicus clone CH230-500A23, WORKING DRA... 46 1.9 1
(AC126950) Rattus norvegicus clone CH230-37K7, *** SEQUENCIN... 46 1.9 1
(AC118488) Rattus norvegicus clone CH230-302F24, WORKING DRA... 46 1.9 1
(AC099163) Rattus norvegicus clone CH230-50K14, *** SEQUENCI... 46 1.9 1
(AC094837) Rattus norvegicus clone CH230-5N10, *** SEQUENCIN... 46 1.9 1
(AC224692) Bos taurus clone CH240-478M6, WORKING DRAFT SEQUE... 46 1.9 1
(AC202755) Callithrix jacchus clone CH259-211A21, WORKING DR... 46 1.9 1
(AC167768) Bos taurus clone CH240-140H4, *** SEQUENCING IN P... 46 1.9 1
(AC024187) Homo sapiens chromosome 11 clone RP11-424G4, WORK... 46 1.9 1
(AK050886) Mus musculus 9 days embryo whole body cDNA, RIKEN... 46 1.9 1
(BH542232) BOGOF64TF BOGO Brassica oleracea genomic clone BO... 46 1.9 1
(BH495178) BOHHB36TR BOHH Brassica oleracea genomic clone BO... 46 1.9 1
(FH858267) OSB_177005xf18f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH858247) OSB_177005xp05f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH858157) OSB_177005xi15f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH858155) OSB_177005xi09f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH858098) OSB_177004xb12f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH857927) OSB_177003xi02f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH857889) OSB_177003xm11f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH857882) OSB_177003xk01f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH857873) OSB_177003xe19f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH857868) OSB_177003xc05f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH857833) OSB_177002xf18f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH857827) OSB_177002xd20f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(FH857805) OSB_177002xl15f1.ab1 OSB_177 Nicotiana tabacum ge... 46 1.9 1
(EK312311) 1095462401013 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.9 1
(EJ554828) 1092959488278 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.9 1
(EJ524276) 1092955171813 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.9 1
(EJ049228) 1095454135269 Global-Ocean-Sampling_GS-26-01-01-1... 46 1.9 1
(ED812783) ML__Ba0075D01r ML__Ba Mimulus lewisii genomic, ge... 46 1.9 1
(ED577300) SALK_017967.33.70.x Arabidopsis thaliana TDNA ins... 46 1.9 1
(ED184021) AUAC-aar33c12.g1 Ascaris suum whole genome shotgu... 46 1.9 1
(ED142820) AUAC-aaa97f09.b1 Ascaris suum whole genome shotgu... 46 1.9 1
(AJ304255) Plasmodium chabaudi genome survey sequence, clone... 46 1.9 1
(CU975553) Brassica napus GSS, clone JBnB062P14, end read, p... 46 1.9 1
(CE254553) tigr-gss-dog-17000336346141 Dog Library Canis lup... 46 1.9 1
(CE227430) tigr-gss-dog-17000333245348 Dog Library Canis lup... 46 1.9 1
(BH610738) SALK_017967 Arabidopsis thaliana TDNA insertion l... 46 1.9 1
(EL442543) CHTM19212.b1_G03.ab1 CHT(LMS) Jerusalem artichoke... 46 1.9 1
(CV893281) PA003C11 mycelium, non-sporulating growth Phytoph... 46 1.9 1
(BW774750) Branchiostoma floridae cDNA, gastrula clone:bfga0... 46 1.9 1
(BB970632) Plasmodium berghei str. ANKA cDNA clone: OK000272... 46 1.9 1
(EX752324) RR1CB15JQ RR1(CS) Raphanus raphanistrum subsp. ma... 46 1.9 1
(EX748375) RR1CB15TF RR1(CS) Raphanus raphanistrum subsp. ma... 46 1.9 1
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 46 1.9 1
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ... 34 1.9 13
(AX392736) Sequence 26 from Patent WO0212526. 34 2.0 5
(AR707083) Sequence 26 from patent US 6933145. 34 2.0 5
(AP003072) Homo sapiens genomic DNA, chromosome 11q, clone:R... 40 2.0 2
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 32 2.1 9
(EJ713483) 1092956093237 Global-Ocean-Sampling_GS-30-02-01-1... 34 2.1 3
(CZ976230) 178084 Tomato MboI BAC Library Solanum lycopersic... 32 2.1 3
(AC189633) Brassica rapa subsp. pekinensis clone KBrS004A14,... 38 2.1 7
(AC180800) Strongylocentrotus purpuratus clone R3-3024G19, W... 38 2.2 4
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 2.3 13
(EL494764) D06_PFBAMHI-S-T3-PLATE1A.AB1 Blood stage Plasmodi... 40 2.3 2
(AC165218) Medicago truncatula chromosome 2 BAC clone mth2-4... 44 2.3 7
(CU074330) Zebrafish DNA sequence from clone CH1073-261D9 in... 40 2.4 2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 2.4 17
(AC090226) Homo sapiens chromosome 18, clone RP11-723D20, co... 32 2.4 7
(CP000993) Borrelia recurrentis A1, complete genome. 32 2.5 15
(BX936411) Mouse DNA sequence from clone RP24-62G2 on chromo... 42 2.5 3
(CP000976) Borrelia duttonii Ly, complete genome. 32 2.6 16
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 36 2.6 9
(CR352286) Zebrafish DNA sequence from clone CH211-93A20 in ... 36 2.6 4
(AC092334) Homo sapiens chromosome 16 clone RP11-199J4, WORK... 36 2.8 6
(FP017293) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 3.0 5
(AL745595) Danio rerio genomic clone DKEY-17C9, genomic surv... 36 3.0 2
(AC158503) Glycine max clone gmw2-133d1, complete sequence. 34 3.0 5
(CR407563) Zebrafish DNA sequence from clone DKEY-252G21 in ... 36 3.0 6
(AC123421) Rattus norvegicus clone CH230-262B22, WORKING DRA... 42 3.1 5
(FP085369) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 3.2 2
(EJ982044) 1093022161782 Global-Ocean-Sampling_GS-30-02-01-1... 32 3.2 3
(AC068052) Homo sapiens chromosome 5 clone RP11-143H23, WORK... 32 3.2 6
(CR962130) Medicago truncatula chromosome 5 clone mte1-63h20... 34 3.3 7
(AC121736) Rattus norvegicus clone CH230-69M2, *** SEQUENCIN... 34 3.4 6
(AL645573) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 3.4 5
(AP001926) Homo sapiens genomic DNA, chromosome 11q clone:RP... 38 3.4 7
(AC102635) Mus musculus chromosome 16, clone RP23-112K20, co... 40 3.5 6
(AC177400) Strongylocentrotus purpuratus clone R3-53L22, WOR... 40 3.6 5
(CU633446) Podospora anserina genomic DNA chromosome 2, supe... 32 3.6 2
(AL772194) Mouse DNA sequence from clone RP23-331M18 on chro... 34 3.7 2
(AZ971197) 2M0244B11R Mouse 10kb plasmid UUGC2M library Mus ... 32 3.7 3
(AC102260) Mus musculus clone RP24-200D15, WORKING DRAFT SEQ... 34 3.7 2
(AC148574) Dasypus novemcinctus clone VMRC5-180G9, WORKING D... 34 3.7 2
(AC125443) Mus musculus chromosome 1, clone RP24-493N12, com... 38 3.8 6
(AC117251) Mus musculus BAC clone RP24-372C12 from chromosom... 38 3.8 7
(CL572870) OB__Ba0016G21.r OB__Ba Oryza brachyantha genomic ... 42 3.8 2
(GE662568) CBUF1693.g1 B.anynana_abdomen_2-10kb Bicyclus any... 34 3.8 2
(AC016775) Homo sapiens chromosome 11 clone RP11-573M3, WORK... 40 3.9 3
(AM435292) Vitis vinifera contig VV78X075140.6, whole genome... 34 3.9 3
(CU655828) Zebrafish DNA sequence from clone CH1073-132M13 C... 34 4.0 2
(AM285312) Spiroplasma citri GII3-3X chromosome, contig Cont... 32 4.1 4
(EJ376768) 1092963745113 Global-Ocean-Sampling_GS-28-01-01-1... 38 4.1 2
(AC234735) Brassica rapa subsp. pekinensis chromosome Linkag... 40 4.2 6
(AM444732) Vitis vinifera contig VV78X246562.4, whole genome... 34 4.3 2
(AM698041) Vanderwaltozyma polyspora partial mitochondrial g... 30 4.3 5
(EJ282771) 1095368001133 Global-Ocean-Sampling_GS-27-01-01-1... 32 4.3 3
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 36 4.4 10
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 38 4.5 7
(Z98551) Plasmodium falciparum MAL3P6. 38 4.6 6
(FH037312) CHO_OF3291xf05f1.ab1 CHO_OF3 Nicotiana tabacum ge... 40 4.6 2
(AC005521) Homo sapiens PAC clone RP5-1106E3 from 7, complet... 38 4.7 5
(EJ513337) 1095427395474 Global-Ocean-Sampling_GS-28-01-01-1... 40 4.8 2
(EK280632) 1095462293699 Global-Ocean-Sampling_GS-31-01-01-1... 40 4.8 2
(BX276095) Zebrafish DNA sequence from clone CH211-225H17. 38 4.8 5
(CU861508) Zebrafish DNA sequence from clone CH73-132F6 in l... 44 4.8 2
(EI055044) hhd0016ca10.b1 hhd Oryza coarctata genomic clone ... 38 4.9 2
(EJ846216) 1093017856523 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.9 2
(FI318111) AdH1161-CPY2-J12TR AdH1 Arachis duranensis genomi... 32 4.9 2
(ER472747) 1092963971301 Global-Ocean-Sampling_GS-35-01-01-1... 40 4.9 2
(GE871700) 1112870119524 BABEVCEREB-C-01-1-7KB Papio anubis ... 34 4.9 2
(EK004167) 1093227000941 Global-Ocean-Sampling_GS-30-02-01-1... 34 4.9 2
(EK445516) 1095467035713 Global-Ocean-Sampling_GS-32-01-01-1... 34 5.0 2
(AZ958361) 2M0225D10R Mouse 10kb plasmid UUGC2M library Mus ... 34 5.0 2
(DX421794) BE1076_D12_F IASMA L1 HindIII BAC library Vitis v... 34 5.0 2
(EJ539884) 1092955355938 Global-Ocean-Sampling_GS-29-01-01-1... 36 5.0 2
(BH132177) ENTNR63TF Entamoeba histolytica Sheared DNA Entam... 42 5.0 2
(CZ440085) OA_BBa0133B05.f OA_BBa Oryza alta genomic clone O... 34 5.0 2
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 36 5.3 11
(AC139520) Rattus norvegicus clone CH230-25M19, WORKING DRAF... 42 5.3 6
(AC021171) Homo sapiens BAC clone RP11-674I16 from 2, comple... 34 5.3 7
(AC124952) Medicago truncatula clone mth2-24m24, complete se... 32 5.4 8
(AC118148) Rattus norvegicus clone CH230-382K14, *** SEQUENC... 38 5.4 4
(AC118695) Mus musculus chromosome 19, clone RP24-62C10, com... 40 5.5 3
(CR457460) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 5.6 4
(AL606703) Zebrafish DNA sequence from clone BUSM1-181A10 in... 36 5.6 4
(AC161479) Pan troglodytes BAC clone CH251-168J1 from chromo... 36 5.6 5
(DT770043) 125241760 TH1 Tribolium castaneum cDNA clone 58I9... 36 5.6 2
(EJ584099) 1092961002111 Global-Ocean-Sampling_GS-29-01-01-1... 36 5.7 2
(AC079835) Homo sapiens BAC clone RP11-15O17 from 4, complet... 36 5.7 7
(AC144651) Mus musculus BAC clone RP24-251O18 from chromosom... 36 5.7 5
(AC124314) Mus musculus chromosome 10, clone RP23-193B6, com... 36 5.7 6
(AC011052) Homo sapiens clone RP11-10E17, WORKING DRAFT SEQU... 34 5.8 7
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 32 5.8 8
(U42402) Drosophila melanogaster stripe b protein mRNA, comp... 40 5.9 2
(AP008072) Lotus japonicus genomic DNA, chromosome 4, clone:... 42 5.9 5
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 6.0 8
(DX048922) KBrB051G04F KBrB, Brassica rapa BamHI BAC library... 34 6.0 3
(BD460526) Diagnosis of Diseases Associated with Cell Cycle. 34 6.0 3
(BD452448) Diagnosis of Diseases Associated with Cell Cycle. 34 6.0 3
(AX348859) Sequence 317 from Patent WO0202807. 34 6.0 3
(AX344446) Sequence 293 from Patent WO0200926. 34 6.0 3
(AX252062) Sequence 323 from Patent WO0168911. 34 6.0 3
(AC224546) Bos taurus clone CH240-482E16, WORKING DRAFT SEQU... 42 6.0 4
(AL691427) Mouse DNA sequence from clone RP23-317I15 on chro... 38 6.1 5
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com... 42 6.4 16
(AC197791) MACACA MULATTA BAC clone CH250-488I20 from chromo... 36 6.4 4
(AP007496) Lotus japonicus genomic DNA, chromosome 4, clone:... 42 6.6 5
(DX530363) GH_MBb0073A23r GH_MBb Gossypium hirsutum genomic ... 38 6.7 2
(AK013191) Mus musculus 10, 11 days embryo whole body cDNA, ... 36 6.7 2
(EJ854622) 1093017910501 Global-Ocean-Sampling_GS-30-02-01-1... 34 6.8 3
(AM441042) Vitis vinifera contig VV78X080319.3, whole genome... 36 6.8 3
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 34 6.8 6
(EJ796745) 1093017405068 Global-Ocean-Sampling_GS-30-02-01-1... 32 6.9 3
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 40 6.9 12
(AC172885) Brassica rapa subsp. campestris clone KBrH134H15,... 32 7.0 5
(BX072529) Zebrafish DNA sequence from clone DKEY-20D17 in l... 40 7.1 5
(EK051613) 1092959710143 Global-Ocean-Sampling_GS-31-01-01-1... 32 7.2 3
(CT863711) Medicago truncatula chromosome 5 clone mth2-152j1... 36 7.3 5
(U42403) Drosophila melanogaster stripe a protein mRNA, comp... 40 7.4 2
(CT998556) Zebrafish DNA sequence from clone CH211-79H18 in ... 44 7.6 1
(CR926459) Zebrafish DNA sequence from clone CH211-260O22 in... 44 7.6 1
(CR450789) Zebrafish DNA sequence from clone DKEY-7P12 in li... 44 7.6 1
(CR352249) Zebrafish DNA sequence from clone DKEY-97O18 in l... 44 7.6 1
(BX548034) Zebrafish DNA sequence from clone DKEY-106M16 in ... 44 7.6 1
(BX294104) Zebrafish DNA sequence from clone CH211-245I22 in... 44 7.6 1
(BX004843) Zebrafish DNA sequence from clone CH211-165E15 in... 44 7.6 1
(AY728234) Hydromantes brunus mitochondrion, complete genome. 44 7.6 1
(AL591170) Zebrafish DNA sequence from clone BUSM1-221D18 in... 44 7.6 1
(BV028014) S212P60313FF9.T0 CZECHII/Ei Mus musculus STS geno... 44 7.6 1
(CT025612) Mouse DNA sequence from clone RP23-430O20 on chro... 44 7.6 1
(AL808015) Mouse DNA sequence from clone RP23-467C11 on chro... 44 7.6 1
(AL807805) Mouse DNA sequence from clone RP23-48K5 on chromo... 44 7.6 1
(AC162443) Mus musculus chromosome 7, clone RP23-457F4, comp... 44 7.6 1
(AC159991) Mus musculus chromosome 1, clone RP23-413H17, com... 44 7.6 1
(AC119840) Mus musculus chromosome 3, clone RP24-112E5, comp... 44 7.6 1
(AC116392) Mus musculus chromosome 10, clone RP23-93D3, comp... 44 7.6 1
(AC114558) Mus musculus chromosome 8, clone RP23-47G19, comp... 44 7.6 1
(AC105323) Mus musculus chromosome 3, clone RP23-424L10, com... 44 7.6 1
(AC102227) Mus musculus chromosome 1, clone RP24-62C22, comp... 44 7.6 1
(AC074177) Mus musculus strain C57BL/6J clone rp23-157n16 ma... 44 7.6 1
(AB121692) Mus musculus peptidylarginine deiminase gene clus... 44 7.6 1
(FJ044824) Pinus taeda isolate 4748 anonymous locus 0_10838_... 44 7.6 1
(FJ044823) Pinus taeda isolate 4735 anonymous locus 0_10838_... 44 7.6 1
(FJ044822) Pinus taeda isolate 4745 anonymous locus 0_10838_... 44 7.6 1
(FJ044821) Pinus taeda isolate 4752 anonymous locus 0_10838_... 44 7.6 1
(FJ044820) Pinus taeda isolate 4750 anonymous locus 0_10838_... 44 7.6 1
(FJ044819) Pinus taeda isolate 4743 anonymous locus 0_10838_... 44 7.6 1
(FJ044818) Pinus taeda isolate 4739 anonymous locus 0_10838_... 44 7.6 1
(FJ044817) Pinus taeda isolate 4738 anonymous locus 0_10838_... 44 7.6 1
(FJ044816) Pinus taeda isolate 4744 anonymous locus 0_10838_... 44 7.6 1
(FJ044815) Pinus taeda isolate 4746 anonymous locus 0_10838_... 44 7.6 1
(FJ044814) Pinus taeda isolate 4749 anonymous locus 0_10838_... 44 7.6 1
(FJ044813) Pinus taeda isolate 4740 anonymous locus 0_10838_... 44 7.6 1
(FJ044812) Pinus taeda isolate 4751 anonymous locus 0_10838_... 44 7.6 1
(FJ044811) Pinus taeda isolate 4741 anonymous locus 0_10838_... 44 7.6 1
(FJ044810) Pinus taeda isolate 4747 anonymous locus 0_10838_... 44 7.6 1
(FJ044809) Pinus taeda isolate 4736 anonymous locus 0_10838_... 44 7.6 1
(FJ044808) Pinus taeda isolate 4737 anonymous locus 0_10838_... 44 7.6 1
(FJ044807) Pinus taeda isolate 4742 anonymous locus 0_10838_... 44 7.6 1
(EF418043) Pyrus communis self-incompatibility associated ri... 44 7.6 1
(DQ871229) Pyrus communis cultivar General Leclerc S-RNase (... 44 7.6 1
(AM482513) Vitis vinifera contig VV78X031627.6, whole genome... 44 7.6 1
(AM459850) Vitis vinifera contig VV78X004222.5, whole genome... 44 7.6 1
(AM453461) Vitis vinifera contig VV78X022285.8, whole genome... 44 7.6 1
(AJ831474) Pisum sativum promoter region and partial pa2 gen... 44 7.6 1
(AC216472) Populus trichocarpa clone POP059-A09, complete se... 44 7.6 1
(AC186137) Medicago truncatula chromosome 2 BAC clone mth2-7... 44 7.6 1
(AC183495) Brassica oleracea Contig A, complete sequence. 44 7.6 1
(AC174342) Medicago truncatula chromosome 6 clone mth2-166e1... 44 7.6 1
(AC161399) Medicago truncatula chromosome 2 clone mte1-30k4,... 44 7.6 1
(AC139708) Medicago truncatula clone mth2-9f16, complete seq... 44 7.6 1
(AC073944) Arabidopsis thaliana chromosome 1 BAC T7N22 genom... 44 7.6 1
(AB236424) Pyrus communis Sq-RNase gene for Sq-RNase, comple... 44 7.6 1
(GN008271) Sequence 712 from Patent EP2014669. 44 7.6 1
(EU370925) Phlaeoba albonema mitochondrion, complete genome. 44 7.6 1
(DQ927303) Tetrahymena malaccensis strain MP75 mitochondrion... 44 7.6 1
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 44 7.6 1
(AF482395) Dictyostelium discoideum ABC transporter AbcG17 (... 44 7.6 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 44 7.6 1
(AC008255) Drosophila melanogaster clone BACR48D17, complete... 44 7.6 1
(AC006816) Caenorhabditis elegans cosmid Y71D11A, complete s... 44 7.6 1
(AC092798) Homo sapiens chromosome 3 clone RP11-653E17, comp... 44 7.6 1
(AC162190) Bos taurus clone CH240-116C11, WORKING DRAFT SEQU... 44 7.6 1
(AC159535) Medicago truncatula clone mth2-152f22, WORKING DR... 44 7.6 1
(AC138554) Ornithorhynchus anatinus clone OA_Bb-573N5, WORKI... 44 7.6 1
(AC135939) Rattus norvegicus clone CH230-441E18, *** SEQUENC... 44 7.6 1
(AC130047) Rattus norvegicus clone CH230-118L6, WORKING DRAF... 44 7.6 1
(AC124619) Mus musculus clone RP24-495F3, LOW-PASS SEQUENCE ... 44 7.6 1
(AC123019) Rattus norvegicus clone CH230-475A13, *** SEQUENC... 44 7.6 1
(AC115345) Rattus norvegicus clone CH230-108A22, *** SEQUENC... 44 7.6 1
(AC110317) Rattus norvegicus clone CH230-235J13, *** SEQUENC... 44 7.6 1
(AC108565) Rattus norvegicus clone CH230-262G12, WORKING DRA... 44 7.6 1
(AC106423) Rattus norvegicus clone CH230-144H16, *** SEQUENC... 44 7.6 1
(AC099149) Rattus norvegicus clone CH230-64N10, *** SEQUENCI... 44 7.6 1
(AC096836) Rattus norvegicus clone CH230-1G15, *** SEQUENCIN... 44 7.6 1
(AC094723) Rattus norvegicus clone CH230-5K2, *** SEQUENCING... 44 7.6 1
(FP236571) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.6 1
(FP085416) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.6 1
(CU929194) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 7.6 1
(AC093105) Schistosoma mansoni chromosome 1 clone SmBAC1-49J... 44 7.6 1
(AC087127) Mus musculus clone CT7-78N2, WORKING DRAFT SEQUEN... 44 7.6 1
(AC073803) Mus musculus clone RP23-457F4, WORKING DRAFT SEQU... 44 7.6 1
(AC073745) Mus musculus clone RP23-28K21, WORKING DRAFT SEQU... 44 7.6 1
(CU466329) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.6 1
(CT583713) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.6 1
(CT573466) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.6 1
(CT027636) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.6 1
(AL732580) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.6 1
(AC199739) Macaca mulatta clone CH250-141I5, WORKING DRAFT S... 44 7.6 1
(AC199270) Colobus guereza clone CH272-172A13, WORKING DRAFT... 44 7.6 1
(AC196750) Citrus sinensis clone CSRBBa-018A12, WORKING DRAF... 44 7.6 1
(AC183126) Bos taurus clone CH240-101M1, WORKING DRAFT SEQUE... 44 7.6 1
(AC172226) Bos taurus clone CH240-257F22, WORKING DRAFT SEQU... 44 7.6 1
(AC012979) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 7.6 1
(AC010845) Drosophila melanogaster strain y chromosome X clo... 44 7.6 1
(AC009769) Homo sapiens chromosome 3 clone RP11-202I12 map 3... 44 7.6 1
(BH300115) CH230-57P11.TJ CHORI-230 Segment 1 Rattus norvegi... 44 7.6 1
(AZ343521) 1M0077L02F Mouse 10kb plasmid UUGC1M library Mus ... 44 7.6 1
(FH016259) CHO_OF446xf11r1.ab1 CHO_OF Nicotiana tabacum geno... 44 7.6 1
(ET950041) CHO_OF449xc04r1.ab1 CHO_OF Nicotiana tabacum geno... 44 7.6 1
(ET675551) CHO_OF467xp10r1.ab1 CHO_OF Nicotiana tabacum geno... 44 7.6 1
(ET675531) CHO_OF467xl10r1.ab1 CHO_OF Nicotiana tabacum geno... 44 7.6 1
(ET675522) CHO_OF467xj14r1.ab1 CHO_OF Nicotiana tabacum geno... 44 7.6 1
(ER937987) AF__Bb0017O17f AF__Bb Aquilegia formosa genomic, ... 44 7.6 1
(ER555872) 1093016320909 Global-Ocean-Sampling_GS-35-01-01-1... 44 7.6 1
(ER362601) 1093017959345 Global-Ocean-Sampling_GS-34-01-01-1... 44 7.6 1
(EK534067) 1095516020507 Global-Ocean-Sampling_GS-32-01-01-1... 44 7.6 1
(EK373417) 1095469428825 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.6 1
(EK343541) 1095467101490 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.6 1
(EK279189) 1095462288964 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.6 1
(EK253212) 1095460289426 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.6 1
(EJ416226) 1093012184388 Global-Ocean-Sampling_GS-28-01-01-1... 44 7.6 1
(EJ023849) 1095454012663 Global-Ocean-Sampling_GS-26-01-01-1... 44 7.6 1
(EJ010109) 1095403652412 Global-Ocean-Sampling_GS-26-01-01-1... 44 7.6 1
(EI094682) hhe0009da08.g1 hhe Oryza ridleyi genomic clone hh... 44 7.6 1
(ED705718) GM_WBb0050I13.r GM_WBb Glycine max genomic clone ... 44 7.6 1
(DX491371) Cpl33191 Papaya Genomic DNA BAC Library Carica pa... 44 7.6 1
(DU673290) Bst005832 lambda03 Boechera stricta genomic clone... 44 7.6 1
(DH574488) Rattus norvegicus DNA, BAC clone: RNB1-091C07, 5'... 44 7.6 1
(CZ574338) OA_BBa0152I03.f OA_BBa Oryza alta genomic clone O... 44 7.6 1
(CU781241) A BAC library has been constructed from PN40024 g... 44 7.6 1
(CR344789) mte1-78D23FM1 BAC end, cultivar Jemalong A17 of M... 44 7.6 1
(AG484561) Mus musculus molossinus DNA, clone:MSMg01-380B17.... 44 7.6 1
(BZ510623) BOMRU61TR BO_2_3_KB Brassica oleracea genomic clo... 44 7.6 1
(BZ243178) CH230-314C23.TJ CHORI-230 Segment 2 Rattus norveg... 44 7.6 1
(BZ162887) CH230-258I23.TJ CHORI-230 Segment 2 Rattus norveg... 44 7.6 1
(BX197011) Danio rerio genomic clone DKEY-206L16, genomic su... 44 7.6 1
(EL601409) He_pwd_0155B04_M13R Heliconius erato pooled wing ... 44 7.6 1
(EL599350) He_pwd_0173A04_M13R Heliconius erato pooled wing ... 44 7.6 1
(EL597953) He_pwd_0223A03_M13R Heliconius erato pooled wing ... 44 7.6 1
(EL596719) He_pwd_0202E04_M13R Heliconius erato pooled wing ... 44 7.6 1
(EL596710) He_pwd_0230D06_M13R Heliconius erato pooled wing ... 44 7.6 1
(EL596039) He_pwd_0172E04_M13R Heliconius erato pooled wing ... 44 7.6 1
(EH087841) PMEBH28TO Perkinsus marinus large insert cDNA lib... 44 7.6 1
(EH087495) PMEBE88TR Perkinsus marinus large insert cDNA lib... 44 7.6 1
(EH087431) PMEBE48TO Perkinsus marinus large insert cDNA lib... 44 7.6 1
(EH081123) PMEA944TO Perkinsus marinus large insert cDNA lib... 44 7.6 1
(EH080559) PMECK46TO Perkinsus marinus large insert cDNA lib... 44 7.6 1
(EH005359) AsEST349 Anisakis simplex 3rd stage larva cDNA li... 44 7.6 1
(EB561789) AGENCOURT_50938025 D. virilis EST Drosophila viri... 44 7.6 1
(DV949858) SB03015A2H11.f1 Normalized subtracted Keck-Tagu L... 44 7.6 1
(AM876923) Venerupis (Ruditapes) philippinarum EST, 5' end s... 44 7.6 1
(CX585962) TTE00035743 Amplicon Express - Conjugative Form T... 44 7.6 1
(CX585170) TTE00023122 Amplicon Express - Conjugative Form T... 44 7.6 1
(CR392177) Pinus pinaster root EST, clone RN27F04. 44 7.6 1
(CO176360) NDL1_61_B08.g1_A029 Needles control Pinus taeda c... 44 7.6 1
(AJ398026) Gallus gallus EST clone 4c12r1. 44 7.6 1
(CF666124) RTCNT1_21_A11.b1_A029 Root control Pinus taeda cD... 44 7.6 1
(BU423448) 603957826F1 CSEQRBN09 Gallus gallus cDNA clone Ch... 44 7.6 1
(BU371606) 603595653F1 CSEQCHN73 Gallus gallus cDNA clone Ch... 44 7.6 1
(BU319525) 603485737F1 CSEQCHN62 Gallus gallus cDNA clone Ch... 44 7.6 1
(BB895402) Macaca fascicularis cDNA clone: Qlv-U100A-G2, 3'e... 44 7.6 1
(GH623397) S1F_219 Assam Tea Drought 3rd and 4th Leaf Camell... 44 7.6 1
(FG611521) stem_S073_H03.SEQ Opium poppy stem cDNA library P... 44 7.6 1
(FG611323) stem_S071_D07.SEQ Opium poppy stem cDNA library P... 44 7.6 1
(FG244298) CBYB2786.b1 CBYB Cercospora zeae-maydis cercospor... 44 7.6 1
(FG130984) b173 Periplaneta americana Whole Organism cDNA Li... 44 7.6 1
(FF573965) TTEG770THB Tetrahymena thermophila conjugation cD... 44 7.6 1
(FF570888) TTEBA39THC Tetrahymena thermophila conjugation cD... 44 7.6 1
(FE722995) SB05011A1B07.f1 Normalized subtracted Keck-Tagu L... 44 7.6 1
(FE268321) CAZO6675.fwd CAZO Naegleria gruberi Flagellate St... 44 7.6 1
(FE268320) CAZO6675.rev CAZO Naegleria gruberi Flagellate St... 44 7.6 1
(FE237942) CAPG4615.fwd CAPG Naegleria gruberi amoeba stage ... 44 7.6 1
(FD460183) LARVD73TR Haematobia irritans 1st Instar Larvae H... 44 7.6 1
(FC696468) CAXX5556.fwd CAXX Lottia gigantea from male gonad... 44 7.6 1
(EY314515) CAWX25550.fwd CAWX Helobdella robusta Primary Ear... 44 7.6 1
(EY298472) CAWX13930.fwd CAWX Helobdella robusta Primary Ear... 44 7.6 1
(EV844723) FMMAL48TF Tetrahymena thermophila SB210 cDNA libr... 44 7.6 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 44 7.6 1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 44 7.6 1
(CU695309) Brassica rapa subsp. pekinensis clone KBrH066L21,... 40 7.6 6
(AC025745) Homo sapiens chromosome 5 clone RP11-710L15, WORK... 36 7.7 5
(AC098916) Rattus norvegicus clone CH230-119O12, *** SEQUENC... 38 7.7 6
(DX997382) CHORI103-51I11.TJ.1 CHORI103 Schistosoma mansoni ... 38 7.9 2
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 7.9 5
(ED533893) KBrB125P05F KBrB, Brassica rapa BamHI BAC library... 34 7.9 3
(ER372834) 1093025187925 Global-Ocean-Sampling_GS-34-01-01-1... 32 7.9 3
(BH653483) BOMKV60TR BO_2_3_KB Brassica oleracea genomic clo... 36 7.9 2
(FP016219) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 8.0 4
(CP000727) Clostridium botulinum A str. Hall, complete genome. 40 8.0 13
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 8.1 17

>(AU060421) Dictyostelium discoideum slug cDNA, clone SLJ683.
Length = 333

Score = 658 bits (332), Expect = 0.0
Identities = 332/332 (100%)
Strand = Plus / Plus


Query: 1 atcattttagcgcaaaaatgaacaacacttcatcatcatcaacaacaaaggatggaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcattttagcgcaaaaatgaacaacacttcatcatcatcaacaacaaaggatggaattt 60


Query: 61 caacaaaacctccaattcacactgccggaaaagttgaaattcatcaagagacatcaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caacaaaacctccaattcacactgccggaaaagttgaaattcatcaagagacatcaacaa 120


Query: 121 ttatgaaagcaagattaattcaacacatattacaaacatattatttattaaattttatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttatgaaagcaagattaattcaacacatattacaaacatattatttattaaattttatat 180


Query: 181 ttttacttgcatatccaattttaaggttatcaggtctaattttaaaaccaaagaatgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttttacttgcatatccaattttaaggttatcaggtctaattttaaaaccaaagaatgaat 240


Query: 241 taatgattttatatgtatcaggatttatggttgtattaaaaatattaaagaataaaaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taatgattttatatgtatcaggatttatggttgtattaaaaatattaaagaataaaaata 300


Query: 301 ttgatcaaattttaacaggtattatattcaca 332
||||||||||||||||||||||||||||||||
Sbjct: 301 ttgatcaaattttaacaggtattatattcaca 332

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,007,943,546
Number of extensions: 70143564
Number of successful extensions: 6778665
Number of sequences better than 10.0: 527
Length of query: 745
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 721
Effective length of database: 99,340,224,878
Effective search space: 71624302137038
Effective search space used: 71624302137038
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U01439-1 (Contig-U01439-1Q) /CSM_Contig/Contig-U01439-1Q.Seq.d
(745 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q5RF53) RecName: Full=Thioredoxin domain-containing protein 14;... 51 4e-05
(Q6DFS0) RecName: Full=Thioredoxin domain-containing protein 14;... 51 4e-05
(Q4R5B4) RecName: Full=Thioredoxin domain-containing protein 14;... 50 6e-05
(Q7JW12) RecName: Full=Thioredoxin domain-containing protein 14 ... 50 6e-05
(Q5XIK2) RecName: Full=Thioredoxin domain-containing protein 14;... 50 6e-05
AK075359_1(AK075359|pid:none) Homo sapiens cDNA PSEC0045 fis, cl... 50 6e-05
(Q2TBU2) RecName: Full=Thioredoxin domain-containing protein 14;... 50 6e-05
(Q9Y320) RecName: Full=Thioredoxin domain-containing protein 14;... 50 6e-05
AK298065_1(AK298065|pid:none) Homo sapiens cDNA FLJ52711 complet... 50 6e-05
AF059753_1(AF059753|pid:none) Homo sapiens clone 008a05 My009 pr... 49 2e-04
BT059508_1(BT059508|pid:none) Salmo salar clone ssal-rgf-507-032... 47 5e-04
(Q6IQC7) RecName: Full=Thioredoxin domain-containing protein 14;... 47 6e-04
BT059734_1(BT059734|pid:none) Salmo salar clone ssal-rgf-528-063... 47 6e-04
BT079718_1(BT079718|pid:none) Esox lucius clone eluc-evq-524-324... 45 0.002
FN357297_5(FN357297|pid:none) Schistosoma mansoni genome sequenc... 42 0.016
BT080474_1(BT080474|pid:none) Caligus clemensi clone ccle-evs-51... 42 0.016
EF086116_1(EF086116|pid:none) Picea sitchensis clone WS0281_O16 ... 40 0.10
CR954201_273(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 39 0.22
(Q18484) RecName: Full=Thioredoxin domain-containing protein 14 ... 39 0.22
CP000581_300(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 38 0.29
AE014185_262(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 36 1.1
AL844509_613(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.5
CP001357_1766(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 35 3.2
CP001301_30(CP001301|pid:none) Borrelia garinii PBr plasmid PBr_... 34 4.3
CR940352_90(CR940352|pid:none) Theileria annulata strain Ankara ... 34 5.6
AL844506_267(AL844506|pid:none) Plasmodium falciparum 3D7 chromo... 33 7.3

>(Q5RF53) RecName: Full=Thioredoxin domain-containing protein 14;
Flags: Precursor; &CR857308_1(CR857308|pid:none)
Length = 296

Score = 50.8 bits (120), Expect = 4e-05
Identities = 31/91 (34%), Positives = 46/91 (50%)
Frame = +3

Query: 345 GINFGKIDIGRWKXMAYEYDXADSVLSKQIPLIIXFKNGVEXFRMPYRKNEFKMPYDKKT 524
G+NFGK+D+GR+ ++ Y + S L+KQ+P +I F+ G E R P DKK
Sbjct: 188 GLNFGKVDVGRYTDVSMRYKVSTSPLTKQLPTLILFQGGKEVMRRP--------QIDKKG 239

Query: 525 PKDDKLFEPCNLSYDNIRLYFNLDTLLSQVK 617
F S +N+ FNL+ L + K
Sbjct: 240 RAVSWTF-----SEENVIREFNLNELYQRAK 265

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 868,007,278
Number of extensions: 14174807
Number of successful extensions: 33812
Number of sequences better than 10.0: 26
Number of HSP's gapped: 33657
Number of HSP's successfully gapped: 26
Length of query: 248
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 123
Effective length of database: 646,610,989
Effective search space: 79533151647
Effective search space used: 79533151647
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.77 gvh: 0.30 alm: 0.28 top: 0.53 tms: 0.13 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
24.0 %: mitochondrial
12.0 %: plasma membrane
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: peroxisomal
4.0 %: cytoplasmic

>> prediction for Contig-U01439-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0