Contig-U06991-1 |
Contig ID |
Contig-U06991-1 |
Contig update |
2001. 8.30 |
Contig sequence |
|
Gap |
no gap |
Contig length |
275 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
3240869 |
End point |
3241135 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U06991 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.11 |
Homology vs DNA |
Query= Contig-U06991-1 (Contig-U06991-1Q) /CSM_Contig/Contig-U06991-1Q.Seq.d (275 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU269643) Dictyostelium discoideum vegetative cDNA clone:VS... 224 1e-54 1 (AU269642) Dictyostelium discoideum vegetative cDNA clone:VS... 224 1e-54 1 (ER531081) 1093015751296 Global-Ocean-Sampling_GS-35-01-01-1... 52 0.010 1 (AC151069) Bos taurus clone CH240-478N6, WORKING DRAFT SEQUE... 48 0.16 1 (AC165548) Bos taurus clone CH240-174E8, WORKING DRAFT SEQUE... 48 0.16 1 (AC122140) Mus musculus BAC clone RP24-270F2 from 17, comple... 34 0.35 2 (EF647600) Solanum lycopersicum chromosome 9 clone C09HBa007... 46 0.63 1 (AP007961) Lotus japonicus genomic DNA, chromosome 5, clone:... 46 0.63 1 (CP000109) Thiomicrospira crunogena XCL-2, complete genome. 46 0.63 1 (AC217519) Homo sapiens chromosome UNK clone ABC13-48642600E... 42 1.4 2 (CU302421) Mouse DNA sequence from clone CH29-115K17 on chro... 44 2.5 1 (AC160000) Mus musculus 6 BAC RP24-340J19 (Roswell Park Canc... 44 2.5 1 (AC138117) Mus musculus BAC clone RP24-146K16 from chromosom... 44 2.5 1 (AC116571) Mus musculus BAC clone RP23-97B18 from 6, complet... 44 2.5 1 (AP009017) Bombyx mori genomic DNA, chromosome 3, BAC clone:... 44 2.5 1 (AC152717) Bos taurus clone CH240-7B11, WORKING DRAFT SEQUEN... 44 2.5 1 (AC175187) Bos taurus clone CH240-27O18, WORKING DRAFT SEQUE... 44 2.5 1 (AC171857) Bos taurus clone CH240-308G23, WORKING DRAFT SEQU... 44 2.5 1 (DU957117) 227490 Tomato MboI BAC Library Solanum lycopersic... 44 2.5 1 (DE385848) Bombyx mori genomic DNA, BAC clone:7L4C. 44 2.5 1 (DE341020) Bombyx mori genomic DNA, BAC clone:BET_035_L02. 44 2.5 1 (FD933862) SmSal979 Orange wheat blossom midge salivary glan... 44 2.5 1 (CP000766) Rickettsia rickettsii str. Iowa, complete genome. 30 4.1 2 (CP000848) Rickettsia rickettsii str. 'Sheila Smith', comple... 30 4.1 2 (CU928685) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 4.6 2 (AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 40 4.9 4 (AC079150) Homo sapiens BAC clone RP11-155F11 from 2, comple... 42 5.4 2 (AC169575) Bos taurus clone CH240-217F15, WORKING DRAFT SEQU... 36 5.5 2 (AE008662) Rickettsia conorii str. Malish 7, section 94 of 1... 30 5.5 2 (AZ524271) 230PbC11 Pb MBN #21 Plasmodium berghei genomic 3'... 30 6.4 2 (DB769383) Apis mellifera head cDNA, RIKEN full-length enric... 32 6.5 2 (EJ076244) 1095458124032 Global-Ocean-Sampling_GS-26-01-01-1... 34 8.7 2 (BX957256) Zebrafish DNA sequence from clone DKEY-23N7 in li... 42 9.8 1 (AY591713) Mus musculus clone IgKVk33-85 immunoglobulin kapp... 42 9.8 1 (AC153614) Mus musculus 6 BAC RP23-344N8 (Roswell Park Cance... 42 9.8 1 (AC127353) Mus musculus BAC clone RP23-81P21 from chromosome... 42 9.8 1 (AC124383) Mus musculus BAC clone RP24-411E14 from chromosom... 42 9.8 1 (AM457877) Vitis vinifera, whole genome shotgun sequence, co... 42 9.8 1 (AC102803) Homo sapiens chromosome 18, clone RP11-454J3, com... 42 9.8 1 (AC130008) Rattus norvegicus clone CH230-69H22, WORKING DRAF... 42 9.8 1 (AC127212) Rattus norvegicus clone CH230-32C10, *** SEQUENCI... 42 9.8 1 (CU468501) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.8 1 (AP001651) Homo sapiens genomic DNA, chromosome 18q22 clone:... 42 9.8 1 (AC216424) Solanum lycopersicum chromosome 7 clone C07HBa017... 42 9.8 1 (AC181244) Strongylocentrotus purpuratus clone R3-115K20, WO... 42 9.8 1 (AC178958) Strongylocentrotus purpuratus clone R3-3121K18, W... 42 9.8 1 (AC169471) Sorex araneus clone SA_Ba-215B23, WORKING DRAFT S... 42 9.8 1 (AC167109) Sorex araneus clone SA_Ba-538H24, WORKING DRAFT S... 42 9.8 1 (AC023972) Homo sapiens chromosome 18 clone RP11-778A8 map 1... 42 9.8 1 (FH590264) CHO_OF4908xm17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 9.8 1 (FH129835) CHO_OF3500xc21r1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 9.8 1 (FH097299) CHO_OF3025xc03f1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 9.8 1 (ER614818) 1093016343078 Global-Ocean-Sampling_GS-36-01-01-2... 42 9.8 1 (EJ091370) 1095460186974 Global-Ocean-Sampling_GS-26-01-01-1... 42 9.8 1 (CU091912) Equus caballus GSS, BAC clone CH241-190M11, SP6 e... 42 9.8 1 (CL065686) CH216-105B20_Sp6.1 CH216 Xenopus (Silurana) tropi... 42 9.8 1 (CC223537) CH261-135O17_Sp6.1 CH261 Gallus gallus genomic cl... 42 9.8 1 (BX217297) Danio rerio genomic clone DKEY-258H6, genomic sur... 42 9.8 1 (ES512980) BIG_AF_20798 Brine Shrimp embryos, 10 hours after... 42 9.8 1 (ES508121) BIG_AF_15938 Brine Shrimp embryos, 10 hours after... 42 9.8 1 (DW204133) EST20397 Larval Stage 1 Aedes aegypti cDNA clone ... 42 9.8 1 (DT922103) BMSB13043 Hematopoietic stem cells Mus musculus c... 42 9.8 1 (AV112029) Mus musculus 10-day embryo cDNA, partial sequence... 42 9.8 1 (CJ103440) Mus musculus 14 days embryo whole body cDNA, RIKE... 42 9.8 1 (CJ098576) Mus musculus 14 days embryo whole body cDNA, RIKE... 42 9.8 1 (CB181153) AGENCOURT_11379769 NIH_MGC_164 Mus musculus cDNA ... 42 9.8 1 (BI988101) 3221-42 Mouse E14.5 retina lambda ZAP II Library ... 42 9.8 1 (EW349011) rplun0129_d14.y1 lun Sus scrofa cDNA 5', mRNA seq... 42 9.8 1 (CP001103) Alteromonas macleodii 'Deep ecotype', complete ge... 42 9.8 1
>(AU269643) Dictyostelium discoideum vegetative cDNA clone:VSJ249, 3' end single read. Length = 260
Score = 224 bits (113), Expect = 1e-54 Identities = 113/113 (100%) Strand = Plus / Plus
Query: 33 gaatttgaaaatcaattaaagattgaatttaataaacaagatgtatttagtataaaaaga 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33 gaatttgaaaatcaattaaagattgaatttaataaacaagatgtatttagtataaaaaga 92
Query: 93 aaagaggaattaggatataaagcaaagagattaattgattatggtagatattt 145 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 aaagaggaattaggatataaagcaaagagattaattgattatggtagatattt 145
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 182,021,582 Number of extensions: 13926036 Number of successful extensions: 1134141 Number of sequences better than 10.0: 69 Length of query: 275 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 252 Effective length of database: 93,106,754,628 Effective search space: 23462902166256 Effective search space used: 23462902166256 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
|
protein update |
2009. 6.23 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |