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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06988-1
Contig ID Contig-U06988-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06988-1 (Contig-U06988-1Q) /CSM_Contig/Contig-U06988-1Q.Seq.d
GCAGAATGGCAACCCCAACAAATAATTACAACACAATTGTTGGATCACCA
ATGCCAACTGCAACTACAGCTGCAACAACAACAACAGTAACACCAACGCA
AAAAGAACTTAATATAGAAGATCTTCAATTATTTCCATCAATTTTAGATA
TAATTTCAAGAATTAAAGATGATGAAATTGATTTAATTAGAGCAATTAAT
TTAGCAAATGAAACACGAACAAAACAATTGAAACTTTAAATNAATTACCA
GGAATAAATAGATCTTTAGAAAATCAAGAGGAATTATTAAAAACATATAA
ACAAACTTTAAAAAAAAAAGTAGAATTATTGGAAAAATTAAAGAAATTGG
AGATATTTGAAAAATATAATAAAATAAAATCTACTTCCTCACAATCACCA
CAGATTCAATCAAAATTAGAATTACAAACAGAACTATCACAAACAGAACC
ATCTCAAACAGAACCATCTCAAACAGAACCATCTCAAACAGAACCATCAC
AAACAGAATCTTCACAAATAGAATCATCACAAATAGAATCATCACAAACC
GAAACTGAGAAATCAAAAGAAACAACAGAAGATATAATGAAAGAATAAAA
AAGTAATCATAATATTATTAAAATTGTGTAATAAAAATAAATAAAATAAA
TAAAATAAATAAAAAGATTTTTTA
Gap no gap
Contig length 674
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 5187737
End point 5188417
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U06988
List of clone(s) 

est1=VSJ235E,1,675
Translated Amino Acid sequence 
qngnpnk*lqhncwitnancnyscnnnnsntnakrt*yrrssiisinfrynfkn*r**n*
fn*sn*fsk*NTNKTIETLNXLPGINRSLENQEELLKTYKQTLKKKVELLEKLKKLEIFE
KYNKIKSTSSQSPQIQSKLELQTELSQTEPSQTEPSQTEPSQTEPSQTESSQIESSQIES
SQTETEKSKETTEDIMKE*ksnhniikiv**k*ik*ik*ikrff
Translated Amino Acid sequence (All Frames) 
Frame A:
aewqpqqiittqlldhqcqlqlqlqqqqq*hqrkknli*kifnyfhqf*i*fqelkmmkl
i*leqli*qmkheqnn*nfkxitrnk*ifrksrgiikni*tnfkkksriigkikeigdi*
ki**nkiyfltittdsikiritnrtitnrtisnrtisnrtisnrtitnriftnriitnri
itnrn*eikrnnrrynerikk*s*yy*ncvikinkinkinkkif


Frame B:
qngnpnk*lqhncwitnancnyscnnnnsntnakrt*yrrssiisinfrynfkn*r**n*
fn*sn*fsk*NTNKTIETLNXLPGINRSLENQEELLKTYKQTLKKKVELLEKLKKLEIFE
KYNKIKSTSSQSPQIQSKLELQTELSQTEPSQTEPSQTEPSQTEPSQTESSQIESSQIES
SQTETEKSKETTEDIMKE*ksnhniikiv**k*ik*ik*ikrff


Frame C:
rmatptnnyntivgspmptattaattttvtptqkelniedlqlfpsildiisrikddeid
lirainlanetrtkqlkl*xnyqe*idl*kikrny*khinkl*kkk*nywkn*rnwrylk
niik*nllphnhhrfnqn*nykqnyhkqnhlkqnhlkqnhlkqnhhkqnlhk*nhhk*nh
hkpklrnqkkqqki**knkkviiillklcnknk*nk*nk*kdfl
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06988-1 (Contig-U06988-1Q)
/CSM_Contig/Contig-U06988-1Q.Seq.d
         (674 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06988-1 (Contig-U06988-1Q) /CSM_Contig/Conti...   607  e-174
Contig-U11988-1 (Contig-U11988-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12811-1 (Contig-U12811-1Q) /CSM_Contig/Conti...    42  8e-04
Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11793-1 (Contig-U11793-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U01212-1 (Contig-U01212-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14782-1 (Contig-U14782-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U13509-1 (Contig-U13509-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U11968-1 (Contig-U11968-1Q) /CSM_Contig/Conti...    30  2.9

>Contig-U06988-1 (Contig-U06988-1Q) /CSM_Contig/Contig-U06988-1Q.Seq.d
          Length = 674

 Score =  607 bits (306), Expect = e-174
 Identities = 309/309 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagaatggcaaccccaacaaataattacaacacaattgttggatcaccaatgccaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcagaatggcaaccccaacaaataattacaacacaattgttggatcaccaatgccaactg 60

                                                                       
Query: 61  caactacagctgcaacaacaacaacagtaacaccaacgcaaaaagaacttaatatagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caactacagctgcaacaacaacaacagtaacaccaacgcaaaaagaacttaatatagaag 120

                                                                       
Query: 121 atcttcaattatttccatcaattttagatataatttcaagaattaaagatgatgaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcttcaattatttccatcaattttagatataatttcaagaattaaagatgatgaaattg 180

                                                                       
Query: 181 atttaattagagcaattaatttagcaaatgaaacacgaacaaaacaattgaaactttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttaattagagcaattaatttagcaaatgaaacacgaacaaaacaattgaaactttaaa 240

                                                                       
Query: 241 tnaattaccaggaataaatagatctttagaaaatcaagaggaattattaaaaacatataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tnaattaccaggaataaatagatctttagaaaatcaagaggaattattaaaaacatataa 300

                    
Query: 301 acaaacttt 309
           |||||||||
Sbjct: 301 acaaacttt 309


 Score =  472 bits (238), Expect = e-133
 Identities = 238/238 (100%)
 Strand = Plus / Plus

                                                                       
Query: 381 ctacttcctcacaatcaccacagattcaatcaaaattagaattacaaacagaactatcac 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacttcctcacaatcaccacagattcaatcaaaattagaattacaaacagaactatcac 440

                                                                       
Query: 441 aaacagaaccatctcaaacagaaccatctcaaacagaaccatctcaaacagaaccatcac 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacagaaccatctcaaacagaaccatctcaaacagaaccatctcaaacagaaccatcac 500

                                                                       
Query: 501 aaacagaatcttcacaaatagaatcatcacaaatagaatcatcacaaaccgaaactgaga 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacagaatcttcacaaatagaatcatcacaaatagaatcatcacaaaccgaaactgaga 560

                                                                     
Query: 561 aatcaaaagaaacaacagaagatataatgaaagaataaaaaagtaatcataatattat 618
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatcaaaagaaacaacagaagatataatgaaagaataaaaaagtaatcataatattat 618


>Contig-U11988-1 (Contig-U11988-1Q) /CSM_Contig/Contig-U11988-1Q.Seq.d
          Length = 1316

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 61  caactacagctgcaacaacaacaacagtaaca 92
           |||| |||||||||||||||||||||| ||||
Sbjct: 890 caacaacagctgcaacaacaacaacagcaaca 921


 Score = 30.2 bits (15), Expect = 2.9
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 77  aacaacaacagtaacacca 95
           ||||||||||| |||||||
Sbjct: 801 aacaacaacagaaacacca 819


>Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Contig-U11246-1Q.Seq.d
          Length = 2635

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 61   caactacagctgcaacaacaacaaca 86
            |||||||||||||| |||||||||||
Sbjct: 1569 caactacagctgcagcaacaacaaca 1594


 Score = 30.2 bits (15), Expect = 2.9
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 72  gcaacaacaacaaca 86
           |||||||||||||||
Sbjct: 454 gcaacaacaacaaca 468


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,054
Number of Sequences: 6905
Number of extensions: 17054
Number of successful extensions: 5735
Number of sequences better than 10.0: 455
length of query: 674
length of database: 5,674,871
effective HSP length: 16
effective length of query: 658
effective length of database: 5,564,391
effective search space: 3661369278
effective search space used: 3661369278
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U06988-1 (Contig-U06988-1Q) /CSM_Contig/Contig-U06988-1Q.Seq.d
         (674 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269619) Dictyostelium discoideum vegetative cDNA clone:VS...   607   0.0    2
(AU269620) Dictyostelium discoideum vegetative cDNA clone:VS...   529   0.0    2
(DH753425) Rattus norvegicus DNA, BAC clone: RNB1-332E15, 5'...    32   7e-07  4
(DH537116) Rattus norvegicus DNA, BAC clone: RNB1-040D23, 3'...    32   7e-07  4
(DH804514) Rattus norvegicus DNA, BAC clone: RNB1-401E05, 3'...    32   2e-06  4
(FE640686) CBYZ3022.b1 CBYZ Panicum virgatum Kanlow 4 day ol...    34   9e-06  3
(ES749331) BGBV-aad45b07.g1 Snail_EST_pSMART Biomphalaria gl...    58   4e-04  1
(DH754978) Rattus norvegicus DNA, BAC clone: RNB1-334G02, 5'...    30   6e-04  5
(AC191328) Zea mays chromosome 4 clone CH201-475M19; ZMMBBc0...    30   0.001  3
(AC212570) Zea mays chromosome 7 clone CH201-278C15; ZMMBBc0...    30   0.001  3
(AC211347) Zea mays chromosome 5 clone CH201-157B7; ZMMBBc01...    30   0.001  3
(AC203423) Zea mays chromosome 9 clone CH201-179J15; ZMMBBc0...    30   0.001  3
(AC199900) Zea mays chromosome 4 clone CH201-387P5; ZMMBBc03...    30   0.001  3
(AC198496) Zea mays chromosome 8 clone CH201-240B12; ZMMBBc0...    30   0.001  3
(AC204894) Zea mays chromosome 2 clone CH201-107K23; ZMMBBc0...    30   0.001  3
(AC190734) Zea mays chromosome 5 clone CH201-233L21; ZMMBBc0...    30   0.001  3
(AC212110) Zea mays chromosome 1 clone ZMMBBb-627D6; ZMMBBb0...    30   0.001  3
(AC115132) Rattus norvegicus clone CH230-108K6, *** SEQUENCI...    30   0.004  3
(EA194649) Sequence 58964 from patent US 7214786.                  54   0.007  1
(DY891649) CeleSEQ10395 Cunninghamella elegans pBluescript (...    54   0.007  1
(BT001902) Drosophila melanogaster SD21996 full insert cDNA.       46   0.018  2
(AC198291) Zea mays chromosome unknown clone CH201-213E15; Z...    36   0.018  2
(AY060262) Drosophila melanogaster GH09289 full length cDNA.       46   0.021  2
(FK714884) pl_053-F9 Ilyanassa (snail) 0-48h Ilyanassa obsol...    36   0.023  2
(EB626178) AGENCOURT_54972683 D. mojavensis EST Drosophila m...    52   0.027  1
(AY492329) Simian immunodeficiency virus isolate AU91wk16-12...    50   0.11   1
(AY492328) Simian immunodeficiency virus isolate AU91wk16-2 ...    50   0.11   1
(AY169083) Simian immunodeficiency virus clone 91H914 envelo...    50   0.11   1
(EA188030) Sequence 52345 from patent US 7214786.                  50   0.11   1
(AC137227) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    50   0.11   1
(BX059511) Single read from an extremity of a full-length cD...    50   0.11   1
(FH490578) CHO_OF4854xc22f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.11   1
(FH480280) CHO_OF4191xf23f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.11   1
(FH285345) CHO_OF4192xf23f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.11   1
(CZ201254) AIAA-aae90g19.b1 Ancylostoma caninum whole genome...    50   0.11   1
(CT914112) Phaeodactylum tricornutum 5-PRIME EST from clone ...    50   0.11   1
(EY368074) CAXA11602.fwd CAXA Helobdella robusta Subtracted ...    50   0.11   1
(EY347825) CAWZ16166.fwd CAWZ Helobdella robusta Primary Lat...    50   0.11   1
(EY340075) CAWZ10085.fwd CAWZ Helobdella robusta Primary Lat...    50   0.11   1
(CU468230) Acinetobacter baumannii str. SDF, complete genome.      50   0.11   1
(CQ582152) Sequence 9910 from Patent WO0171042.                    46   0.12   2
(CQ581606) Sequence 9364 from Patent WO0171042.                    46   0.12   2
(DH798016) Rattus norvegicus DNA, BAC clone: RNB1-392G17, 3'...    32   0.14   4
(DH826269) Rattus norvegicus DNA, BAC clone: RNB1-431P06, 5'...    32   0.15   4
(ER506117) 1093015422422 Global-Ocean-Sampling_GS-35-01-01-1...    38   0.22   2
(AC191282) Zea mays chromosome 7 clone CH201-129I4; ZMMBBc01...    36   0.25   2
(DH697293) Rattus norvegicus DNA, BAC clone: RNB1-256D05, 3'...    30   0.27   4
(DH526685) Rattus norvegicus DNA, BAC clone: RNB1-026A19, 3'...    30   0.30   4
(U72748) Simian immunodeficiency virus strain SIVsmE543, com...    48   0.43   1
(U05165) Simian immunodeficiency virus SIVRhE543 clone 6-4 e...    48   0.43   1
(U05162) Simian immunodeficiency virus SIVRhE543 clone 6-2 e...    48   0.43   1
(U05161) Simian immunodeficiency virus SIVRhE543 clone 6-19 ...    48   0.43   1
(U05160) Simian immunodeficiency virus SIVRhE543 clone 6-18 ...    48   0.43   1
(U05156) Simian immunodeficiency virus SIVRhE543 clone 6-14 ...    48   0.43   1
(U05154) Simian immunodeficiency virus SIVRhE543 clone 6-12 ...    48   0.43   1
(U05153) Simian immunodeficiency virus SIVRhE543 clone 6-11 ...    48   0.43   1
(U05152) Simian immunodeficiency virus SIVRhE543 clone 6-10 ...    48   0.43   1
(U05151) Simian immunodeficiency virus SIVRhE543 clone 6-1 e...    48   0.43   1
(U05117) Simian immunodeficiency virus SIVRhE543 clone 2-1 e...    48   0.43   1
(U05100) Simian immunodeficiency virus SIVRhE543 clone 4-9 e...    48   0.43   1
(U05096) Simian immunodeficiency virus SIVRhE543 clone 4-12 ...    48   0.43   1
(U05091) Simian immunodeficiency virus SIVRhE543 clone 4-6 e...    48   0.43   1
(U05089) Simian immunodeficiency virus SIVRhE543 clone 4-2 e...    48   0.43   1
(U05088) Simian immunodeficiency virus SIVRhE543 clone 4-16 ...    48   0.43   1
(U05084) Simian immunodeficiency virus SIVRhE543 clone 1-7 e...    48   0.43   1
(U05080) Simian immunodeficiency virus SIVRhE543 clone 1-13 ...    48   0.43   1
(U05077) Simian immunodeficiency virus SIVRhE543 clone 1-5 e...    48   0.43   1
(U05071) Simian immunodeficiency virus SIVRhE543 clone 1-2 e...    48   0.43   1
(U05070) Simian immunodeficiency virus SIVRhE543 clone 5-6 e...    48   0.43   1
(U05069) Simian immunodeficiency virus SIVRhE543 clone 5-4 e...    48   0.43   1
(U05067) Simian immunodeficiency virus SIVRhE543 clone 5-2 e...    48   0.43   1
(U05058) Simian immunodeficiency virus SIVRhE543 clone 3-4 e...    48   0.43   1
(L20099) Simian immunodeficiency virus envelope glycoprotein...    48   0.43   1
(L20098) Simian immunodeficiency virus envelope glycoprotein...    48   0.43   1
(DQ201174) Simian immunodeficiency virus clone SIVsmH635FC, ...    48   0.43   1
(DQ201173) Simian immunodeficiency virus clone SIVsmH635SB10...    48   0.43   1
(DQ201172) Simian immunodeficiency virus clone SIVsmH635F-L3...    48   0.43   1
(AY221513) Simian immunodeficiency virus isolate PT583 clone...    48   0.43   1
(AY221512) Simian immunodeficiency virus isolate PT583 clone...    48   0.43   1
(AY221511) Simian immunodeficiency virus isolate PT573 clone...    48   0.43   1
(AY221510) Simian immunodeficiency virus isolate PT573 clone...    48   0.43   1
(AY221509) Simian immunodeficiency virus isolate H445 clone ...    48   0.43   1
(AY221508) Simian immunodeficiency virus clone 445d3'-2 Vpr ...    48   0.43   1
(AC106528) Rattus norvegicus clone CH230-40B7, *** SEQUENCIN...    48   0.43   1
(AC094336) Rattus norvegicus clone CH230-3J11, *** SEQUENCIN...    48   0.43   1
(AZ549073) ENTFQ68TF Entamoeba histolytica Sheared DNA Entam...    48   0.43   1
(AQ518340) HS_5102_B2_C01_SP6E RPCI-11 Human Male BAC Librar...    48   0.43   1
(ER297832) 1092343661031 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.43   1
(ER282013) 1092343401586 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.43   1
(ED791659) GM_WBb0175C15.r GM_WBb Glycine max genomic clone ...    48   0.43   1
(DH476168) Monosiga ovata DNA, fosmid clone: MOF-025L06, gen...    48   0.43   1
(DV392086) NADB895TR Aedes aegypti infected with Dengue viru...    48   0.43   1
(DV392085) NADB895TF Aedes aegypti infected with Dengue viru...    48   0.43   1
(DV258794) AEDAM08TO Aedes re-sequencing Aedes aegypti cDNA ...    48   0.43   1
(CD657949) EtESTef59g10.y1 Eimeria tenella M5-6 Excised cDNA...    48   0.43   1
(BJ382148) Dictyostelium discoideum cDNA clone:ddc43e04, 3' ...    48   0.43   1
(BJ356464) Dictyostelium discoideum cDNA clone:dda60k10, 3' ...    48   0.43   1
(BJ350911) Dictyostelium discoideum cDNA clone:dda41l12, 3' ...    48   0.43   1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    38   0.48   11
(AC019950) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   0.55   4

>(AU269619) Dictyostelium discoideum vegetative cDNA clone:VSJ235,
           5' end single read.
          Length = 610

 Score =  607 bits (306), Expect(2) = 0.0
 Identities = 308/309 (99%)
 Strand = Plus / Plus


Query: 1   gcagaatggcaaccccaacaaataattacaacacaattgttggatcaccaatgccaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gcagaatggcaaccccaacaaataattacaacacaattgttggatcaccaatgccaactg 60


Query: 61  caactacagctgcaacaacaacaacagtaacaccaacgcaaaaagaacttaatatagaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caactacagctgcaacaacaacaacagtaacaccaacgcaaaaagaacttaatatagaag 120


Query: 121 atcttcaattatttccatcaattttagatataatttcaagaattaaagatgatgaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atcttcaattatttccatcaattttagatataatttcaagaattaaagatgatgaaattg 180


Query: 181 atttaattagagcaattaatttagcaaatgaaacacgaacaaaacaattgaaactttaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttaattagagcaattaatttagcaaatgaaacacgaacaaaacaattgaaactttaaa 240


Query: 241 tnaattaccaggaataaatagatctttagaaaatcaagaggaattattaaaaacatataa 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaattaccaggaataaatagatctttagaaaatcaagaggaattattaaaaacatataa 300


Query: 301 acaaacttt 309
           |||||||||
Sbjct: 301 acaaacttt 309

 Score =  398 bits (201), Expect(2) = 0.0
 Identities = 201/201 (100%)
 Strand = Plus / Plus


Query: 381 ctacttcctcacaatcaccacagattcaatcaaaattagaattacaaacagaactatcac 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacttcctcacaatcaccacagattcaatcaaaattagaattacaaacagaactatcac 440


Query: 441 aaacagaaccatctcaaacagaaccatctcaaacagaaccatctcaaacagaaccatcac 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacagaaccatctcaaacagaaccatctcaaacagaaccatctcaaacagaaccatcac 500


Query: 501 aaacagaatcttcacaaatagaatcatcacaaatagaatcatcacaaaccgaaactgaga 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacagaatcttcacaaatagaatcatcacaaatagaatcatcacaaaccgaaactgaga 560


Query: 561 aatcaaaagaaacaacagaag 581
           |||||||||||||||||||||
Sbjct: 561 aatcaaaagaaacaacagaag 581

 Score =  163 bits (82), Expect = 1e-35
 Identities = 103/110 (93%)
 Strand = Plus / Plus


Query: 439 acaaacagaaccatctcaaacagaaccatctcaaacagaaccatctcaaacagaaccatc 498
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 acaaacagaactatcacaaacagaaccatctcaaacagaaccatctcaaacagaaccatc 483


Query: 499 acaaacagaatcttcacaaatagaatcatcacaaatagaatcatcacaaa 548
            ||||||||| | ||||||| |||||| ||||||||||||||||||||||
Sbjct: 484 tcaaacagaaccatcacaaacagaatcttcacaaatagaatcatcacaaa 533

 Score =  163 bits (82), Expect = 1e-35
 Identities = 103/110 (93%)
 Strand = Plus / Plus


Query: 424 acaaacagaactatcacaaacagaaccatctcaaacagaaccatctcaaacagaaccatc 483
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acaaacagaaccatctcaaacagaaccatctcaaacagaaccatctcaaacagaaccatc 498


Query: 484 tcaaacagaaccatcacaaacagaatcttcacaaatagaatcatcacaaa 533
            ||||||||| | ||||||| |||||| ||||||||||||||||||||||
Sbjct: 499 acaaacagaatcttcacaaatagaatcatcacaaatagaatcatcacaaa 548

 Score =  107 bits (54), Expect = 5e-19
 Identities = 84/94 (89%)
 Strand = Plus / Plus


Query: 455 caaacagaaccatctcaaacagaaccatctcaaacagaaccatcacaaacagaatcttca 514
           |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 425 caaacagaactatcacaaacagaaccatctcaaacagaaccatctcaaacagaaccatct 484


Query: 515 caaatagaatcatcacaaatagaatcatcacaaa 548
           |||| |||| ||||||||| |||||| |||||||
Sbjct: 485 caaacagaaccatcacaaacagaatcttcacaaa 518

 Score =  107 bits (54), Expect = 5e-19
 Identities = 84/94 (89%)
 Strand = Plus / Plus


Query: 425 caaacagaactatcacaaacagaaccatctcaaacagaaccatctcaaacagaaccatct 484
           |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct: 455 caaacagaaccatctcaaacagaaccatctcaaacagaaccatcacaaacagaatcttca 514


Query: 485 caaacagaaccatcacaaacagaatcttcacaaa 518
           |||| |||| ||||||||| |||||| |||||||
Sbjct: 515 caaatagaatcatcacaaatagaatcatcacaaa 548

 Score = 71.9 bits (36), Expect = 3e-08
 Identities = 69/80 (86%)
 Strand = Plus / Plus


Query: 470 caaacagaaccatctcaaacagaaccatcacaaacagaatcttcacaaatagaatcatca 529
           |||||||||| ||| |||||||||||||| ||||||||| | || |||| |||| ||||
Sbjct: 425 caaacagaactatcacaaacagaaccatctcaaacagaaccatctcaaacagaaccatct 484


Query: 530 caaatagaatcatcacaaac 549
           |||| |||| ||||||||||
Sbjct: 485 caaacagaaccatcacaaac 504

 Score = 71.9 bits (36), Expect = 3e-08
 Identities = 69/80 (86%)
 Strand = Plus / Plus


Query: 425 caaacagaactatcacaaacagaaccatctcaaacagaaccatctcaaacagaaccatct 484
           |||||||||| ||| |||||||||||||| ||||||||| | || |||| |||| ||||
Sbjct: 470 caaacagaaccatctcaaacagaaccatcacaaacagaatcttcacaaatagaatcatca 529


Query: 485 caaacagaaccatcacaaac 504
           |||| |||| ||||||||||
Sbjct: 530 caaatagaatcatcacaaac 549

 Score = 50.1 bits (25), Expect = 0.11
 Identities = 55/65 (84%)
 Strand = Plus / Plus


Query: 485 caaacagaaccatcacaaacagaatcttcacaaatagaatcatcacaaatagaatcatca 544
           |||||||||| ||||||||||||| | || |||| |||| |||| |||| |||| ||||
Sbjct: 425 caaacagaactatcacaaacagaaccatctcaaacagaaccatctcaaacagaaccatct 484


Query: 545 caaac 549
           |||||
Sbjct: 485 caaac 489

 Score = 50.1 bits (25), Expect = 0.11
 Identities = 55/65 (84%)
 Strand = Plus / Plus


Query: 425 caaacagaactatcacaaacagaaccatctcaaacagaaccatctcaaacagaaccatct 484
           |||||||||| ||||||||||||| | || |||| |||| |||| |||| |||| ||||
Sbjct: 485 caaacagaaccatcacaaacagaatcttcacaaatagaatcatcacaaatagaatcatca 544


Query: 485 caaac 489
           |||||
Sbjct: 545 caaac 549

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 703,954,157
Number of extensions: 47564511
Number of successful extensions: 5733502
Number of sequences better than 10.0: 406
Length of query: 674
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 650
Effective length of database: 97,308,875,965
Effective search space: 63250769377250
Effective search space used: 63250769377250
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U06988-1 (Contig-U06988-1Q) /CSM_Contig/Contig-U06988-1Q.Seq.d
         (674 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 371,493,897
Number of extensions: 3171037
Number of successful extensions: 10027
Number of sequences better than 10.0: 0
Number of HSP's gapped: 10000
Number of HSP's successfully gapped: 0
Length of query: 224
Length of database: 1,040,966,779
Length adjustment: 124
Effective length of query: 100
Effective length of database: 643,635,439
Effective search space: 64363543900
Effective search space used: 64363543900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.82  gvh: 0.23  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for Contig-U06988-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0