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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01438-1
Contig ID Contig-U01438-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U01438-1 (Contig-U01438-1Q) /CSM_Contig/Contig-U01438-1Q.Seq.d
AACATCAACCACAACCACACACACCACCACAACATCAACCACCACAACTA
AATAATAAAAATAATACATCATTGGATAGTAGCAATGGAGCTATTCCATT
CTTTAATAATAATGTTGGTATTGGATCACCATCAATTCCAATGTCATCAT
CTAATCAACAAATCCCACCTCAATATCA
Gap no gap
Contig length 178
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4775175
End point 4774997
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U01438
List of clone(s) 

est1=SLJ658F,1,179
Translated Amino Acid sequence 
HQPQPHTPPQHQPPQLNNKNNTSLDSSNGAIPFFNNNVGIGSPSIPMSSSNQQIPPQY
Translated Amino Acid sequence (All Frames) 
Frame A:
ninhnhthhhninhhn*iikiihhwivamelfhsliimlvldhhqfqchhlinkshlni


Frame B:
tstttthttttsttttk**k*yiig**qwsysil***cwywitinsnvii*stnptsis


Frame C:
HQPQPHTPPQHQPPQLNNKNNTSLDSSNGAIPFFNNNVGIGSPSIPMSSSNQQIPPQY
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01438-1 (Contig-U01438-1Q)
/CSM_Contig/Contig-U01438-1Q.Seq.d
         (178 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01438-1 (Contig-U01438-1Q) /CSM_Contig/Conti...   258  2e-69
Contig-U04088-1 (Contig-U04088-1Q) /CSM_Contig/Conti...    44  7e-05
Contig-U13930-1 (Contig-U13930-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U13847-1 (Contig-U13847-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U12415-1 (Contig-U12415-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U12144-1 (Contig-U12144-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U12096-1 (Contig-U12096-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U11853-1 (Contig-U11853-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U11640-1 (Contig-U11640-1Q) /CSM_Contig/Conti...    36  0.016
Contig-U11175-1 (Contig-U11175-1Q) /CSM_Contig/Conti...    36  0.016

>Contig-U01438-1 (Contig-U01438-1Q) /CSM_Contig/Contig-U01438-1Q.Seq.d
          Length = 178

 Score =  258 bits (130), Expect = 2e-69
 Identities = 130/130 (100%)
 Strand = Plus / Plus

                                                                       
Query: 49  taaataataaaaataatacatcattggatagtagcaatggagctattccattctttaata 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  taaataataaaaataatacatcattggatagtagcaatggagctattccattctttaata 108

                                                                       
Query: 109 ataatgttggtattggatcaccatcaattccaatgtcatcatctaatcaacaaatcccac 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ataatgttggtattggatcaccatcaattccaatgtcatcatctaatcaacaaatcccac 168

                     
Query: 169 ctcaatatca 178
           ||||||||||
Sbjct: 169 ctcaatatca 178


>Contig-U04088-1 (Contig-U04088-1Q) /CSM_Contig/Contig-U04088-1Q.Seq.d
          Length = 594

 Score = 44.1 bits (22), Expect = 7e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 116 tggtattggatcaccatcaatt 137
           ||||||||||||||||||||||
Sbjct: 34  tggtattggatcaccatcaatt 55


>Contig-U13930-1 (Contig-U13930-1Q) /CSM_Contig/Contig-U13930-1Q.Seq.d
          Length = 459

 Score = 36.2 bits (18), Expect = 0.016
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 50 aaataataaaaataatacatca 71
          ||||||||| ||||||||||||
Sbjct: 58 aaataataataataatacatca 79


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9520
Number of Sequences: 8361
Number of extensions: 9520
Number of successful extensions: 3529
Number of sequences better than 10.0: 660
length of query: 178
length of database: 7,895,291
effective HSP length: 15
effective length of query: 163
effective length of database: 7,769,876
effective search space: 1266489788
effective search space used: 1266489788
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 4.27
Homology vs DNA 
Query= Contig-U01438-1 (Contig-U01438-1Q) /CSM_Contig/Contig-U01438-1Q.Seq.d
         (178 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060414) Dictyostelium discoideum slug cDNA, clone SLJ658.      258   6e-65  1
(AC147587) Ornithorhynchus anatinus clone OA_Bb-560F18, WORK...    36   0.005  2
(AC198836) Ornithorhynchus anatinus clone OA_Bb-498J4, WORKI...    42   0.018  2
(BX936288) Platypus DNA sequence from clone XX-534O22.             40   0.018  2
(EU030442) Ornithorhynchus anatinus MHC class I antigen (Ora...    38   0.018  2
(AC186714) Ornithorhynchus anatinus clone OA_Bb-315P16, WORK...    36   0.018  2
(AC186258) Ornithorhynchus anatinus clone OA_Bb-278I11, WORK...    36   0.018  2
(AC163382) Ornithorhynchus anatinus clone OA_Bb-516D17, WORK...    38   0.018  2
(AC199683) Ornithorhynchus anatinus clone OA_Bb-475C19, WORK...    36   0.018  2
(AC197995) Ornithorhynchus anatinus clone OA_Bb-217G17, WORK...    36   0.018  2
(AC233183) Ornithorhynchus anatinus clone CH236-465B21, WORK...    36   0.018  2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    42   0.026  2
(AC153092) Ornithorhynchus anatinus clone OA_Bb-509N12, WORK...    38   0.065  2
(AC151766) Ornithorhynchus anatinus chromosome UNK clone OAB...    42   0.065  2
(AC148426) Ornithorhynchus anatinus clone OA_Bb-405M2, WORKI...    38   0.065  2
(AC158427) Ornithorhynchus anatinus clone OA_Bb-243F1, WORKI...    38   0.066  2
(AC174421) Ornithorhynchus anatinus clone OA_Bb-469G10, WORK...    48   0.11   1
(AC199684) Ornithorhynchus anatinus clone OA_Bb-495G21, WORK...    42   0.12   2
(AC151865) Ornithorhynchus anatinus clone DP-184N12, WORKING...    42   0.12   2
(AC192697) Ornithorhynchus anatinus clone OA_Bb-415J20, WORK...    42   0.16   2
(AC158431) Ornithorhynchus anatinus clone OA_Bb-507K5, WORKI...    40   0.17   2
(AC129883) Ornithorhynchus anatinus clone OA_Bb-305F19, comp...    40   0.24   2
(AC203131) Ornithorhynchus anatinus clone OA_Bb-118I24, WORK...    36   0.24   2
(AC191482) Ornithorhynchus anatinus clone OA_Bb-144E15, WORK...    36   0.24   2
(AC192915) Ornithorhynchus anatinus clone OA_Bb-104O11, WORK...    36   0.24   2
(AC190460) Ornithorhynchus anatinus clone OA_Bb-484A9, WORKI...    38   0.24   2
(AC197672) Zea mays chromosome 10 clone ZMMBBb-620F14; ZMMBB...    36   0.27   3
(DW253487) UI-S-GB1-aae-l-05-0-UI.s1 UI-S-GB1 Euprymna scolo...    34   0.31   2
(AC159173) Dromaius novaehollandiae clone VMRC16-248F6, WORK...    34   0.39   4
(AC157215) Ornithorhynchus anatinus BAC clone OABb-451P24 fr...    46   0.42   1
(AC202771) Ornithorhynchus anatinus clone OA_Bb-290F9, WORKI...    46   0.42   1
(AC192043) Ornithorhynchus anatinus clone OA_Bb-432F3, WORKI...    46   0.42   1
(AC185160) Ornithorhynchus anatinus clone OA_Bb-216J5, WORKI...    38   0.44   2
(EA686968) Sequence 65847 from patent US 7365185.                  36   0.46   3
(AC192042) Ornithorhynchus anatinus clone OA_Bb-429K2, WORKI...    40   0.49   2
(AC155206) Ornithorhynchus anatinus clone OA_Bb-490K17, WORK...    40   0.51   2
(AC099047) Homo sapiens chromosome 3 clone RP11-73I17, compl...    42   0.60   3
(AC183861) Ornithorhynchus anatinus clone OA_Bb-519G12, WORK...    38   0.60   2
(AC155776) Ornithorhynchus anatinus clone OA_Bb-498K4, WORKI...    42   0.60   2
(AC191486) Ornithorhynchus anatinus clone OA_Bb-276P18, WORK...    42   0.61   2
(AP008212) Oryza sativa (japonica cultivar-group) genomic DN...    36   0.62   2
(AC153089) Ornithorhynchus anatinus clone OA_Bb-415O23, WORK...    40   0.70   2
(AC233316) Ornithorhynchus anatinus clone CH236-51M20, WORKI...    32   0.87   2
(AP004844) Oryza sativa Japonica Group genomic DNA, chromoso...    36   0.87   2
(AL929284) Zebrafish DNA sequence from clone CH211-160H23 in...    36   0.88   2
(AC168747) Strongylocentrotus purpuratus clone R3-3004P16, W...    36   0.88   2
(AP004239) Oryza sativa Japonica Group genomic DNA, chromoso...    36   0.88   2
(AP006533) Oryza sativa Japonica Group genomic DNA, chromoso...    36   0.88   2
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    36   0.96   2
(X95275) Plasmodium falciparum complete gene map of plastid-...    36   1.00   2
(ER471538) 1092963961453 Global-Ocean-Sampling_GS-35-01-01-1...    40   1.0    2
(AC226655) Ornithorhynchus anatinus clone OA_Bb-150A18, WORK...    42   1.1    3
(EA708256) Sequence 87135 from patent US 7365185.                  36   1.1    2
(AC216337) Ornithorhynchus anatinus clone OA_Bb-310N2, WORKI...    42   1.1    3
(EA707475) Sequence 86354 from patent US 7365185.                  36   1.1    2
(AU075977) Oryza sativa Japonica Group cDNA, partial sequenc...    36   1.2    2
(EA709212) Sequence 88091 from patent US 7365185.                  36   1.2    2
(CI375792) Oryza sativa Japonica Group cDNA, clone: J03B3068...    36   1.2    2
(AP010029) Lotus japonicus genomic DNA, chromosome 6, clone:...    42   1.3    2
(EA687126) Sequence 66005 from patent US 7365185.                  36   1.5    3
(AC153744) Ornithorhynchus anatinus clone OA_Bb-401P11, WORK...    40   1.6    2
(BX004821) Zebrafish DNA sequence from clone CH211-171A11 in...    44   1.6    1
(BV498717) S217P60242RD11.T0 Noemie Pan troglodytes troglody...    44   1.6    1
(AC193003) Pan troglodytes BAC clone CH251-5K6 from chromoso...    44   1.6    1
(AC183321) Ornithorhynchus anatinus BAC clone OABb-153H21 fr...    44   1.6    1
(AC153158) Ornithorhynchus anatinus chromosome UNK clone OAB...    44   1.6    1
(AC152723) Ornithorhynchus anatinus chromosome UNK clone OAB...    44   1.6    1
(AC152566) Ornithorhynchus anatinus chromosome UNK clone OAB...    44   1.6    1
(AC152564) Ornithorhynchus anatinus chromosome UNK clone OAB...    44   1.6    1
(AL590075) Human DNA sequence from clone RP11-462L13 on chro...    44   1.6    1
(AL031279) Human DNA sequence from clone RP1-163O16 on chrom...    44   1.6    1
(AC009430) Homo sapiens, clone RP11-45O17, complete sequence.      44   1.6    1
(AC148737) Ornithorhynchus anatinus clone OA_Bb-15P2, WORKIN...    44   1.6    1
(AC147938) Ornithorhynchus anatinus clone OA_Bb-357E20, WORK...    44   1.6    1
(AC144639) Ornithorhynchus anatinus clone OA_Bb-491O19, WORK...    44   1.6    1
(AC139876) Ornithorhynchus anatinus clone OA_Bb-207L12, WORK...    44   1.6    1
(AC108611) Rattus norvegicus clone CH230-292P23, *** SEQUENC...    44   1.6    1
(AC084749) Homo sapiens chromosome X clone RP11-36H18, WORKI...    44   1.6    1
(AC233225) Ornithorhynchus anatinus clone CH236-175F5, WORKI...    44   1.6    1
(AC196351) Ornithorhynchus anatinus clone OA_Bb-392G6, WORKI...    44   1.6    1
(AC196350) Ornithorhynchus anatinus clone OA_Bb-279O11, WORK...    44   1.6    1
(AC186718) Ornithorhynchus anatinus clone OA_Bb-75C12, WORKI...    44   1.6    1
(AC180161) Strongylocentrotus purpuratus clone R3-4003D1, WO...    44   1.6    1
(AC168733) Strongylocentrotus purpuratus clone R3-3010H21, W...    44   1.6    1
(AQ450098) 500007H11.x1 CpIOWAM13mp18gDNA1 Cryptosporidium p...    44   1.6    1
(EJ316255) 1095403291478 Global-Ocean-Sampling_GS-27-01-01-1...    44   1.6    1
(DH363767) Oryzias latipes Fosmid clone:GOLWFno745_j07, forw...    44   1.6    1
(DE086126) Oryzias latipes DNA, clone: ola1-188J20.R, genomi...    44   1.6    1
(AU074405) Dictyostelium discoideum slug cDNA, clone SSK612.       44   1.6    1
(AU052981) Dictyostelium discoideum slug cDNA, clone SLF435.       44   1.6    1
(AM106607) Lutzomyia longipalpis EST clone NSFM-153g05, sequ...    44   1.6    1
(BG225501) kp68f05.y1 TBN95TM-SSFH Strongyloides stercoralis...    44   1.6    1
(BG224389) kp45h01.y1 TBN95TM-SSFH Strongyloides stercoralis...    44   1.6    1
(EY116590) CAZI9960.fwd CAZI Artemisia annua normalized leaf...    44   1.6    1
(EY087911) CAZI1812.fwd CAZI Artemisia annua normalized leaf...    44   1.6    1
(EY072359) CAZI10171.fwd CAZI Artemisia annua normalized lea...    44   1.6    1
(AC148199) Ornithorhynchus anatinus clone OA_Bb-167L10, WORK...    38   1.8    2
(AC151752) Ornithorhynchus anatinus chromosome UNK clone OAB...    38   1.8    2
(AC157242) Ornithorhynchus anatinus clone OA_Bb-318N15, WORK...    38   1.9    2
(AC154174) Ornithorhynchus anatinus chromosome UNK clone OAB...    42   1.9    5
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    32   2.2    2
(AC233011) Ornithorhynchus anatinus clone CH236-265H13, WORK...    42   2.2    2
(AC194523) Ornithorhynchus anatinus clone OA_Bb-463F1, WORKI...    38   2.3    2
(AC154109) Ornithorhynchus anatinus chromosome UNK clone OAB...    40   2.4    2
(AZ020653) RPCI-23-274G15.TJ RPCI-23 Mus musculus genomic cl...    32   2.6    2
(BX995303) Forward strand read from insert in 3'HPRT inserti...    32   3.1    2
(CU694612) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   3.2    2
(AC091790) Sus scrofa clone RP44-278G22, WORKING DRAFT SEQUE...    32   3.2    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   3.2    2
(AC007770) Drosophila melanogaster, chromosome 3R, region 86...    32   3.2    2
(AC198835) Ornithorhynchus anatinus clone OA_Bb-428L21, WORK...    32   3.2    2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    34   3.2    2
(AC231997) Solanum tuberosum chromosome 1 clone RH015O22, **...    34   3.2    2
(CQ597560) Sequence 25318 from Patent WO0171042.                   32   3.3    2
(AC018294) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   3.3    2
(CU539052) Zebrafish DNA sequence from clone CH211-190M1 in ...    32   3.3    2
(DY889085) CeleSEQ6603 Cunninghamella elegans pBluescript (E...    36   3.4    2
(FI118475) MUGQ_CH252P491K11Sp6_CH0190_038 CHORI-252 Vervet ...    36   3.5    2
(CU466306) Platypus DNA sequence from clone CLM1-102P15.           42   3.6    2
(AC233585) Ornithorhynchus anatinus clone CH236-313E20, WORK...    38   3.8    2
(DY886343) CeleSEQ1959 Cunninghamella elegans pBluescript (E...    36   3.9    2
(AC209151) Ornithorhynchus anatinus clone OA_Bb-225J2, WORKI...    42   4.2    3
(AC131013) Homo sapiens 3 BAC RP13-584I6 (Roswell Park Cance...    42   4.2    2
(AC156349) Ornithorhynchus anatinus clone OA_Bb-105B11, WORK...    42   4.2    4
(CL203061) ZMMBBb0568M15r ZMMBBb (HindIII) Zea mays subsp. m...    32   4.2    2
(CT354974) Sus scrofa genomic clone CH242-381E22, genomic su...    32   4.2    2
(BZ027093) oem71e12.g1 B.oleracea002 Brassica oleracea genom...    32   4.3    2
(BZ027095) oem71f03.g1 B.oleracea002 Brassica oleracea genom...    32   4.3    2
(FI490917) CH322-93L03.y CHORI-322 Drosophila melanogaster g...    32   4.3    2
(FI421357) CH322-151D04.y CHORI-322 Drosophila melanogaster ...    32   4.3    2
(CT038190) Sus scrofa genomic clone CH242-6P8, genomic surve...    32   4.3    2
(CL320457) CH242_6P8.f CHORI-242 Sus scrofa genomic clone CH...    32   4.3    2
(FD100107) CBFH6566.b1 CBFH: Normalized blue catfish cDNA li...    34   4.4    2
(EG964240) AU_Ich_022D_E10 Whole organism normalized cDNA li...    34   4.4    2
(CI437063) Oryza sativa Japonica Group cDNA, clone: J06B5168...    34   4.4    2
(CU207378) Platypus DNA sequence from clone CLM1-153M12.           42   4.4    2
(AC190083) Ornithorhynchus anatinus clone OA_Bb-149D14, WORK...    42   4.6    2
(Z68159) Caenorhabditis elegans Cosmid C33D9.                      34   4.8    3
(CT025775) Zebrafish DNA sequence from clone DKEY-112G5 in l...    36   5.0    3
(CT573284) Platypus DNA sequence from clone CLM1-349H20.           42   5.0    3
(AC200003) Ornithorhynchus anatinus clone OA_Bb-275J8, WORKI...    38   5.2    3
(AC195051) Ornithorhynchus anatinus clone OA_Bb-365A21, WORK...    42   5.3    2
(BP114386) Plasmodium berghei strain ANKA cDNA, clone: FCPb2...    28   5.4    3
(AC151795) Ornithorhynchus anatinus chromosome UNK clone OAB...    38   5.5    2
(AC192527) Ornithorhynchus anatinus clone OA_Bb-436A2, WORKI...    38   5.5    3
(AC153156) Ornithorhynchus anatinus chromosome UNK clone OAB...    38   5.6    2
(AC151770) Ornithorhynchus anatinus chromosome UNK clone OAB...    38   5.9    2
(AC193080) Ornithorhynchus anatinus clone OA_Bb-36C16, WORKI...    40   6.0    3
(CU459041) Platypus DNA sequence from clone CLM1-377H6.            38   6.0    2
(AC192693) Ornithorhynchus anatinus clone OA_Bb-161J21, WORK...    38   6.0    2
(AC202770) Ornithorhynchus anatinus clone OA_Bb-247E2, WORKI...    42   6.0    2
(AC191489) Ornithorhynchus anatinus clone OA_Bb-466C3, WORKI...    42   6.2    2
(AC192696) Ornithorhynchus anatinus clone OA_Bb-360J15, WORK...    38   6.2    2
(AC144788) Ornithorhynchus anatinus clone OA_Bb-63M19, compl...    38   6.2    2
(AC233180) Ornithorhynchus anatinus clone CH236-31K23, WORKI...    42   6.3    2
(AC151789) Ornithorhynchus anatinus chromosome UNK clone OAB...    38   6.4    2
(AC192524) Ornithorhynchus anatinus clone OA_Bb-341H5, WORKI...    42   6.5    2
(AC233800) Ornithorhynchus anatinus clone CH236-41N20, WORKI...    38   6.5    2
(BX000529) Zebrafish DNA sequence from clone DKEY-191N2 in l...    42   6.5    1
(AL928843) Zebrafish DNA sequence from clone DKEY-7P8 in lin...    42   6.5    1
(AL645993) Mouse DNA sequence from clone RP23-116K9 on chrom...    42   6.5    1
(CU012050) M.truncatula DNA sequence from clone MTH2-31E18 o...    42   6.5    1
(AX345793) Sequence 864 from Patent WO0200928.                     42   6.5    1
(CU582830) Platypus DNA sequence from clone CLM1-554A3.            42   6.5    1
(CU469422) Platypus DNA sequence from clone CLM1-30C3.             42   6.5    1
(CR855278) Platypus DNA sequence from clone XX-235F6.              42   6.5    1
(AF151171) Ornithorhynchus anatinus mannose 6-phosphate/insu...    42   6.5    1
(AC194529) Ornithorhynchus anatinus BAC clone CH236-730F5 fr...    42   6.5    1
(AC164651) Ornithorhynchus anatinus BAC clone OABb-375A1 fro...    42   6.5    1
(AC152001) Ornithorhynchus anatinus BAC clone OABb-256A1 fro...    42   6.5    1
(AC151763) Ornithorhynchus anatinus BAC clone OABb-433P24 fr...    42   6.5    1
(AC151761) Ornithorhynchus anatinus chromosome UNK clone OAB...    42   6.5    1
(AC151757) Ornithorhynchus anatinus chromosome UNK clone OAB...    42   6.5    1
(AY043292) Tribolium castaneum strain GA-2 HOMC gene cluster...    42   6.5    1
(AC152926) Tribolium castaneum  BAC T.cast_C1K1 (Clemson Uni...    42   6.5    1
(AL365188) Human DNA sequence from clone RP4-806J12 on chrom...    42   6.5    1
(AL358214) Human DNA sequence from clone RP11-675O23 on chro...    42   6.5    1
(AC226384) Homo sapiens FOSMID clone ABC12-46982800G19 from ...    42   6.5    1
(AC159403) Ornithorhynchus anatinus clone DP-174O4, WORKING ...    42   6.5    1
(AC159160) Ornithorhynchus anatinus clone OA_Bb-119H10, WORK...    42   6.5    1
(AC158268) Ornithorhynchus anatinus clone OA_Bb-514G11, WORK...    42   6.5    1
(AC158264) Ornithorhynchus anatinus clone OA_Bb-389P12, WORK...    42   6.5    1
(AC158261) Ornithorhynchus anatinus clone OA_Bb-297G10, WORK...    42   6.5    1
(AC157843) Ornithorhynchus anatinus clone OA_Bb-296O17, WORK...    42   6.5    1
(AC156352) Ornithorhynchus anatinus clone OA_Bb-306O1, WORKI...    42   6.5    1
(AC155775) Ornithorhynchus anatinus clone OA_Bb-402K17, WORK...    42   6.5    1
(AC153747) Ornithorhynchus anatinus clone OA_Bb-518E10, WORK...    42   6.5    1
(AC153094) Ornithorhynchus anatinus clone OA_Bb-552J8, WORKI...    42   6.5    1
(AC153088) Ornithorhynchus anatinus clone OA_Bb-3E7, WORKING...    42   6.5    1
(AC153082) Ornithorhynchus anatinus clone OA_Bb-222D8, WORKI...    42   6.5    1
(AC151866) Ornithorhynchus anatinus clone DP-27M2, WORKING D...    42   6.5    1
(AC148128) Ornithorhynchus anatinus clone OA_Bb-442E1, WORKI...    42   6.5    1
(AC147727) Ornithorhynchus anatinus clone OA_Bb-221N11, WORK...    42   6.5    1
(AC144599) Ornithorhynchus anatinus clone OA_Bb-74A1, WORKIN...    42   6.5    1
(AC141353) Ornithorhynchus anatinus clone OA_Bb-477E14, WORK...    42   6.5    1
(AC140954) Ornithorhynchus anatinus clone OA_Bb-326F13, WORK...    42   6.5    1
(AC140154) Ornithorhynchus anatinus clone OA_Bb-169I9, WORKI...    42   6.5    1
(AC101558) Mus musculus clone RP23-194E22, LOW-PASS SEQUENCE...    42   6.5    1
(AC095687) Rattus norvegicus clone CH230-9C19, WORKING DRAFT...    42   6.5    1
(CR394565) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    42   6.5    1
(AP007663) Lotus japonicus genomic DNA, chromosome 1, clone:...    42   6.5    1
(AC233182) Ornithorhynchus anatinus clone CH236-373I15, WORK...    42   6.5    1
(AC233013) Ornithorhynchus anatinus clone CH236-589C4, WORKI...    42   6.5    1
(AC232918) Ornithorhynchus anatinus clone OA_Bb-506G15, WORK...    42   6.5    1
(AC202773) Ornithorhynchus anatinus clone OA_Bb-433C15, WORK...    42   6.5    1
(AC202259) Ornithorhynchus anatinus clone OA_Bb-326J5, WORKI...    42   6.5    1
(AC200002) Ornithorhynchus anatinus clone OA_Bb-203A16, WORK...    42   6.5    1
(AC198269) Ornithorhynchus anatinus clone OA_Bb-492D8, WORKI...    42   6.5    1
(AC197320) Ornithorhynchus anatinus clone OA_Bb-499F1, WORKI...    42   6.5    1
(AC196909) Ornithorhynchus anatinus clone OA_Bb-453F21, WORK...    42   6.5    1
(AC196621) Ornithorhynchus anatinus clone OA_Bb-456E1, WORKI...    42   6.5    1
(AC195755) Homo sapiens chromosome 3 clone WI2-655P5, *** SE...    42   6.5    1
(AC195050) Ornithorhynchus anatinus clone OA_Bb-292M5, WORKI...    42   6.5    1
(AC193741) Ornithorhynchus anatinus clone OA_Bb-428O5, WORKI...    42   6.5    1
(AC192695) Ornithorhynchus anatinus clone OA_Bb-33I10, WORKI...    42   6.5    1
(AC192694) Ornithorhynchus anatinus clone OA_Bb-186I15, WORK...    42   6.5    1
(AC192523) Ornithorhynchus anatinus clone OA_Bb-286J11, WORK...    42   6.5    1
(AC192040) Ornithorhynchus anatinus clone OA_Bb-203O23, WORK...    42   6.5    1
(AC187448) Ornithorhynchus anatinus clone OA_Bb-142N2, WORKI...    42   6.5    1
(AC185163) Ornithorhynchus anatinus clone OA_Bb-293C8, WORKI...    42   6.5    1
(AC184737) Ornithorhynchus anatinus clone OA_Bb-2D5, WORKING...    42   6.5    1
(AC164500) Ornithorhynchus anatinus clone OA_Bb-474L10, WORK...    42   6.5    1
(BH139225) ENTOS21TF Entamoeba histolytica Sheared DNA Entam...    42   6.5    1
(BH135520) ENTOP02TR Entamoeba histolytica Sheared DNA Entam...    42   6.5    1
(EK490701) 1095505081809 Global-Ocean-Sampling_GS-32-01-01-1...    42   6.5    1
(EJ770337) 1092966001522 Global-Ocean-Sampling_GS-30-02-01-1...    42   6.5    1
(EJ753934) 1092963059780 Global-Ocean-Sampling_GS-30-02-01-1...    42   6.5    1
(EJ753019) 1092963050273 Global-Ocean-Sampling_GS-30-02-01-1...    42   6.5    1
(EJ747148) 1092963007623 Global-Ocean-Sampling_GS-30-02-01-1...    42   6.5    1
(ED814595) ML__Ba0012A04f ML__Ba Mimulus lewisii genomic, ge...    42   6.5    1
(DU960846) 231959 Tomato MboI BAC Library Solanum lycopersic...    42   6.5    1
(DU931795) 356033 Tomato EcoRI BAC Library Solanum lycopersi...    42   6.5    1
(CR964991) mth4-9F13RM1 BAC end, cultivar Jemalong A17 of Me...    42   6.5    1
(DW286628) UI-S-GU1-aeg-p-05-0-UI.s1 UI-S-GU1 Euprymna scolo...    42   6.5    1
(DW286586) UI-S-GU1-aeg-h-05-0-UI.s1 UI-S-GU1 Euprymna scolo...    42   6.5    1
(DW277210) UI-S-HH0-ade-l-15-0-UI.s1 UI-S-HH0 Euprymna scolo...    42   6.5    1
(CK556890) rswla0_023938.y1 swl Bombyx mori cDNA, mRNA seque...    42   6.5    1
(CK555705) rswla0_020862.y1 swl Bombyx mori cDNA, mRNA seque...    42   6.5    1
(W52295) zc48d12.s1 Soares_senescent_fibroblasts_NbHSF Homo ...    42   6.5    1
(FD004847) CBNH4410.b1 CBNH: Normalized blue catfish cDNA li...    42   6.5    1
(EX004322) BGBV-aae33e10.b1 Snail_EST_pSMART Biomphalaria gl...    42   6.5    1
(AM295250) Staphylococcus carnosus subsp. carnosus TM300 com...    42   6.5    1
(AC157844) Ornithorhynchus anatinus clone OA_Bb-428P9, WORKI...    40   6.6    2
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    36   6.6    3
(AC196349) Ornithorhynchus anatinus clone OA_Bb-182K10, WORK...    40   6.6    2
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    36   6.6    3
(AC186170) Ornithorhynchus anatinus chromosome UNK clone OAB...    38   6.7    2
(AC191208) Ornithorhynchus anatinus clone OA_Bb-485M3, WORKI...    40   6.8    2
(AC136226) Oryza sativa Japonica Group chromosome 5 clone OS...    36   6.9    3
(AC212281) Zea mays chromosome 7 clone CH201-564N17; ZMMBBc0...    38   6.9    2
(AC203976) Zea mays chromosome 8 clone CH201-538E22; ZMMBBc0...    36   6.9    2
(AC191487) Ornithorhynchus anatinus clone OA_Bb-306D18, WORK...    40   7.0    3
(AC151753) Ornithorhynchus anatinus chromosome UNK clone OAB...    38   7.1    2
(AC151782) Ornithorhynchus anatinus chromosome UNK clone OAB...    38   7.2    2
(AC158429) Ornithorhynchus anatinus clone OA_Bb-39B24, WORKI...    38   7.3    2
(AC198560) Ornithorhynchus anatinus clone OA_Bb-231M17, WORK...    38   7.4    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   7.4    6
(AC158267) Ornithorhynchus anatinus clone OA_Bb-448G21, WORK...    38   7.5    2
(AC208214) Zea mays chromosome 1 clone CH201-256B12; ZMMBBc0...    36   7.7    3
(AC154928) Ornithorhynchus anatinus clone OA_Bb-440A21, WORK...    38   7.7    2
(BM883820) rc23c03.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    34   7.9    2
(AC210148) Zea mays chromosome 2 clone CH201-447P1; ZMMBBc04...    36   8.0    3
(AX345639) Sequence 710 from Patent WO0200928.                     32   8.7    3
(AC217813) Zea mays chromosome 1 clone CH201-143F21; ZMMBBc0...    36   9.0    3
(CR356240) Zebrafish DNA sequence from clone CH211-226E7 in ...    40   9.2    2
(AC192039) Ornithorhynchus anatinus clone OA_Bb-179A15, WORK...    38   9.3    2
(AC210981) Zea mays chromosome 7 clone CH201-429L18; ZMMBBc0...    38   9.5    2
(CU326346) Platypus DNA sequence from clone CLM1-318I17.           38   9.8    2

>(AU060414) Dictyostelium discoideum slug cDNA, clone SLJ658.
          Length = 179

 Score =  258 bits (130), Expect = 6e-65
 Identities = 130/130 (100%)
 Strand = Plus / Plus


Query: 49  taaataataaaaataatacatcattggatagtagcaatggagctattccattctttaata 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49  taaataataaaaataatacatcattggatagtagcaatggagctattccattctttaata 108


Query: 109 ataatgttggtattggatcaccatcaattccaatgtcatcatctaatcaacaaatcccac 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ataatgttggtattggatcaccatcaattccaatgtcatcatctaatcaacaaatcccac 168


Query: 169 ctcaatatca 178
           ||||||||||
Sbjct: 169 ctcaatatca 178

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 197,896,505
Number of extensions: 15034073
Number of successful extensions: 4460544
Number of sequences better than 10.0: 268
Length of query: 178
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 156
Effective length of database: 99,544,435,898
Effective search space: 15528932000088
Effective search space used: 15528932000088
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.16
Homology vs Protein 
Query= Contig-U01438-1 (Contig-U01438-1Q) /CSM_Contig/Contig-U01438-1Q.Seq.d
         (178 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 133,182,280
Number of extensions: 1138642
Number of successful extensions: 2945
Number of sequences better than 10.0: 0
Number of HSP's gapped: 2938
Number of HSP's successfully gapped: 0
Length of query: 59
Length of database: 1,051,180,864
Length adjustment: 31
Effective length of query: 28
Effective length of database: 950,847,535
Effective search space: 26623730980
Effective search space used: 26623730980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)
PSORT 

 psg: 0.64  gvh: 0.46  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: mitochondrial
	 20.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for Contig-U01438-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0