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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06933-1
Contig ID Contig-U06933-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06933-1 (Contig-U06933-1Q) /CSM_Contig/Contig-U06933-1Q.Seq.d
CCGTGAAAAGAATTATTCAGTAAAGCCAACTATAGATACTTTACATTCCG
CTGTATTAAATGGTTATACGGAAATAATTAAATATCTTTGTGAAACGTTA
CCACCGATCTCGTCATTTCCACCACCATTAAGAGTACCTCAATTACAACA
AGTATTAATGATGTTAATGACATGTGAAAAAAACAATGATTTTCAATCAT
TTACCACTATTATACAATCTAAATCTATAACGTTTTTTAGATTTGTAGAA
TCTAAATCTGTTTTAGAATATAAGTTACTTGAAAATAAAGTAAATTTTAA
ATCTAAATTTTTAAATCACCTTTTTAAAGAGAAATTAATAGATAGTAAAG
CTATATTTAAAAGGTATTGTAAAATTGATTTAAATTTATTTTTATTATTT
AAATATAATCAAGATTGGATTAATCAAGAATACTTTTTTCAATTAATTCA
AGATTCAAATATTCAAATTTTTAATAATATTATACTTGATGAATTGTTTT
TATCAACTTTTTTAATAACTGATAAATTAAAAGATAAATTTATAA
Gap no gap
Contig length 545
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3756197
End point 3755744
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U06933
List of clone(s) 

est1=VSI256F,1,546
Translated Amino Acid sequence 
REKNYSVKPTIDTLHSAVLNGYTEIIKYLCETLPPISSFPPPLRVPQLQQVLMMLMTCEK
NNDFQSFTTIIQSKSITFFRFVESKSVLEYKLLENKVNFKSKFLNHLFKEKLIDSKAIFK
RYCKIDLNLFLLFKYNQDWINQEYFFQLIQDSNIQIFNNIILDELFLSTFLITDKLKDKF
I
Translated Amino Acid sequence (All Frames) 
Frame A:
p*kelfskanyryftfrcikwlygnn*isl*nvttdlvisttikstsittsindvndm*k
kq*fsiiyhyyti*iynvf*icri*icfri*vt*k*skf*i*ifkspf*reinr**syi*
kvl*n*fkfifii*i*srld*srilfsinsrfkysnf**yyt**ivfinffnn**ikr*i
y


Frame B:
REKNYSVKPTIDTLHSAVLNGYTEIIKYLCETLPPISSFPPPLRVPQLQQVLMMLMTCEK
NNDFQSFTTIIQSKSITFFRFVESKSVLEYKLLENKVNFKSKFLNHLFKEKLIDSKAIFK
RYCKIDLNLFLLFKYNQDWINQEYFFQLIQDSNIQIFNNIILDELFLSTFLITDKLKDKF
I


Frame C:
vkriiq*sql*ilyiply*mvirk*lnifvkryhrsrhfhhh*eylnynky**c**hvkk
tmifnhlpllynlnl*rfldl*nlnlf*nisylkik*ilnlnf*itflkrn**ivklylk
givkli*iyfyylniikiglikntffn*fkiqifkfliilylmncfyqlf**lin*kinl
*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06933-1 (Contig-U06933-1Q)
/CSM_Contig/Contig-U06933-1Q.Seq.d
         (545 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06933-1 (Contig-U06933-1Q) /CSM_Contig/Conti...   513  e-146
Contig-U12061-1 (Contig-U12061-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U14745-1 (Contig-U14745-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U14000-1 (Contig-U14000-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U13609-1 (Contig-U13609-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12950-1 (Contig-U12950-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11931-1 (Contig-U11931-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11661-1 (Contig-U11661-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U10530-1 (Contig-U10530-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U08962-1 (Contig-U08962-1Q) /CSM_Contig/Conti...    34  0.15

>Contig-U06933-1 (Contig-U06933-1Q) /CSM_Contig/Contig-U06933-1Q.Seq.d
          Length = 545

 Score =  513 bits (259), Expect = e-146
 Identities = 273/280 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccgtgaaaagaattattcagtaaagccaactatagatactttacattccgctgtattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccgtgaaaagaattattcagtaaagccaactatagatactttacattccgctgtattaaa 60

                                                                       
Query: 61  tggttatacggaaataattaaatatctttgtgaaacgttaccaccgatctcgtcatttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggttatacggaaataattaaatatctttgtgaaacgttaccaccgatctcgtcatttcc 120

                                                                       
Query: 121 accaccattaagagtacctcaattacaacaagtattaatgatgttaatgacatgtgnnnn 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 121 accaccattaagagtacctcaattacaacaagtattaatgatgttaatgacatgtgaaaa 180

                                                                       
Query: 181 nnncaatgattttcaatcatttaccactattatacaatctaaatctataacgttttttag 240
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaacaatgattttcaatcatttaccactattatacaatctaaatctataacgttttttag 240

                                                   
Query: 241 atttgtagaatctaaatctgttttagaatataagttactt 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atttgtagaatctaaatctgttttagaatataagttactt 280


 Score =  276 bits (139), Expect = 2e-74
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                       
Query: 407 aatcaagattggattaatcaagaatacttttttcaattaattcaagattcaaatattcaa 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aatcaagattggattaatcaagaatacttttttcaattaattcaagattcaaatattcaa 466

                                                                       
Query: 467 atttttaataatattatacttgatgaattgtttttatcaacttttttaataactgataaa 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atttttaataatattatacttgatgaattgtttttatcaacttttttaataactgataaa 526

                              
Query: 527 ttaaaagataaatttataa 545
           |||||||||||||||||||
Sbjct: 527 ttaaaagataaatttataa 545


>Contig-U12061-1 (Contig-U12061-1Q) /CSM_Contig/Contig-U12061-1Q.Seq.d
          Length = 622

 Score = 36.2 bits (18), Expect = 0.038
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 72  aaataattaaatatcttt 89
           ||||||||||||||||||
Sbjct: 183 aaataattaaatatcttt 166


>Contig-U14745-1 (Contig-U14745-1Q) /CSM_Contig/Contig-U14745-1Q.Seq.d
          Length = 1780

 Score = 34.2 bits (17), Expect = 0.15
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 466 aatttttaataatatta 482
           |||||||||||||||||
Sbjct: 41  aatttttaataatatta 57


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9922
Number of Sequences: 6905
Number of extensions: 9922
Number of successful extensions: 1161
Number of sequences better than 10.0: 358
length of query: 545
length of database: 5,674,871
effective HSP length: 16
effective length of query: 529
effective length of database: 5,564,391
effective search space: 2943562839
effective search space used: 2943562839
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U06933-1 (Contig-U06933-1Q) /CSM_Contig/Contig-U06933-1Q.Seq.d
         (545 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268403) Dictyostelium discoideum vegetative cDNA clone:VS...   349   0.0    3
(AC116030) Dictyostelium discoideum chromosome 2 map 2090851...   343   0.0    3
(EK324311) 1095467000945 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.013  2
(CU104756) Zebrafish DNA sequence from clone DKEY-232D5 in l...    50   0.083  1
(AC148718) Medicago truncatula clone mth2-39k21, WORKING DRA...    42   0.14   5
(EJ435487) 1093015278551 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.21   3
(DE154799) Bombyx mori genomic DNA, Fosmid clone:RO0297-E06_R.     36   0.24   2
(DQ280166) Muntiacus muntjak vaginalis chromosome 1 clone 05...    48   0.33   1
(EK229169) 1095460172529 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.33   1
(DH191776) Oryzias latipes Fosmid clone:GOLWFno477_k08, forw...    48   0.33   1
(AC160014) Homo sapiens chromosome 15 clone WI2-550D15, comp...    36   0.34   3
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.36   8
(EC821264) SME00004669 esmbsro2 Sawyeria marylandensis cDNA,...    40   0.42   2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   0.46   12
(BX664716) Zebrafish DNA sequence from clone DKEY-3D4 in lin...    34   0.70   2
(CU740085) Brassica rapa subsp. pekinensis clone KBrH016P07,...    42   0.73   3
(AP007528) Lotus japonicus genomic DNA, chromosome 3, clone:...    36   0.79   4
(AC006704) Caenorhabditis elegans clone Y108G3a, *** SEQUENC...    40   0.80   3
(AM459902) Vitis vinifera contig VV78X135233.9, whole genome...    40   0.91   2
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         36   1.1    9
(EA024393) Sequence 1369 from patent US 7135558.                   46   1.3    1
(CQ611519) Sequence 39277 from Patent WO0171042.                   46   1.3    1
(CQ591521) Sequence 19279 from Patent WO0171042.                   46   1.3    1
(BT025141) Drosophila melanogaster IP04864 full insert cDNA.       46   1.3    1
(AY119124) Drosophila melanogaster RE27864 full insert cDNA.       46   1.3    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    46   1.3    1
(AC099030) Drosophila melanogaster, chromosome 2R, region 53...    46   1.3    1
(AC004641) Drosophila melanogaster DNA sequence (P1s DS07321...    46   1.3    1
(AC183409) Asparagus officinalis clone B1-K23-67 and B6-A19-...    46   1.3    1
(AC168418) Strongylocentrotus purpuratus clone R3-4002B2, WO...    46   1.3    1
(AC020024) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   1.3    1
(ET948134) CHO_OF452xo23r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.3    1
(ET948130) CHO_OF452xm21r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.3    1
(ET868489) CHO_OF455xo23r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.3    1
(ER561975) 1093015750730 Global-Ocean-Sampling_GS-36-01-01-2...    46   1.3    1
(ER545010) 1093016156799 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.3    1
(AL106760) Drosophila melanogaster genome survey sequence T7...    46   1.3    1
(EL873060) IP04864.3prime IP Drosophila melanogaster iPCR Am...    46   1.3    1
(EC585415) SpEST-C89 Spironucleus Uni-Zap XR EST Library Spi...    46   1.3    1
(EC067860) 513777 CK01 Drosophila melanogaster cDNA clone 27...    46   1.3    1
(CO332783) EK304535.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    46   1.3    1
(CK133503) RE27864.3prime RE Drosophila melanogaster normali...    46   1.3    1
(AA816902) LD20090.5prime LD Drosophila melanogaster embryo ...    46   1.3    1
(CP000609) Methanococcus maripaludis C5, complete genome.          32   1.4    14
(DV402605) NADVK28TF Aedes aegypti infected with Dengue viru...    42   1.5    2
(DV277062) NAAGT55TF Aedes aegypti - Fat Bodies Normalized (...    42   1.5    2
(AY506385) Euglossa ignita voucher DWR-P86 cytochrome oxidas...    36   1.5    2
(AY506381) Euglossa ignita voucher DWR-E95 cytochrome oxidas...    36   1.6    2
(AY506374) Euglossa orellana voucher DWR-P61 cytochrome oxid...    36   1.6    2
(AY506373) Euglossa orellana voucher DWR-Y36 cytochrome oxid...    36   1.6    2
(AY506382) Euglossa ignita voucher DWR-P87 cytochrome oxidas...    36   1.6    2
(AY506379) Euglossa ignita voucher DWR-C76 cytochrome oxidas...    36   1.6    2
(AY506375) Euglossa flammea voucher DWR-P69 cytochrome oxida...    36   1.6    2
(AY506367) Euglossa orellana voucher DWR-Y49 cytochrome oxid...    36   1.6    2
(AY506378) Euglossa ignita voucher DWR-C75 cytochrome oxidas...    36   1.6    2
(AY506377) Euglossa ignita voucher DWR-C263 cytochrome oxida...    36   1.6    2
(AY506376) Euglossa ignita voucher DWR-Y47 cytochrome oxidas...    36   1.6    2
(AY506380) Euglossa ignita voucher DWR-P181 cytochrome oxida...    36   1.6    2
(AY506366) Euglossa orellana voucher DWR-Y48 cytochrome oxid...    36   1.6    2
(DV275464) NAAH730TR Aedes aegypti - Fat Bodies Normalized (...    42   1.7    2
(DV399876) NADVA65TR Aedes aegypti infected with Dengue viru...    42   1.7    2
(AY080113) AY080113 Scripps Pier (La Jolla, CA) uncultured v...    42   1.8    2
(DV399783) NADVB37TF Aedes aegypti infected with Dengue viru...    42   1.8    2
(DV275462) NAAH730TF Aedes aegypti - Fat Bodies Normalized (...    42   1.8    2
(DV399875) NADVA65TF Aedes aegypti infected with Dengue viru...    42   2.0    2
(DV269124) AEDCQ86TO Aedes re-sequencing Aedes aegypti cDNA ...    42   2.0    2
(DV292253) NABMR40TRB Aedes aegypti infected with Brugia Mal...    42   2.2    2
(AC009453) Homo sapiens chromosome 18, clone RP11-59F14, com...    38   2.3    5
(DV237988) A2FLE68TO Aedes aegypti full length cDNA library,...    42   2.3    2
(EJ065254) 1095458034589 Global-Ocean-Sampling_GS-26-01-01-1...    40   2.3    2
(DV375964) NACM837TF Aedes aegypti infected with Plasmodium ...    42   2.4    2
(DV297126) NABNI01TF Aedes aegypti infected with Brugia Mala...    42   2.4    2
(DV247072) A2FMP19TO Aedes aegypti full length cDNA library,...    42   2.5    2
(BX465859) Zebrafish DNA sequence from clone DKEYP-67G10 in ...    36   2.5    6
(DV292245) NABMR39TF Aedes aegypti infected with Brugia Mala...    42   2.5    2
(AE017263) Mesoplasma florum L1 complete genome.                   36   2.5    12
(AP009369) Arabis hirsuta chloroplast DNA, complete sequence.      32   2.6    2
(AM464068) Vitis vinifera contig VV78X035204.2, whole genome...    32   3.1    2
(FD989515) RR4H023TF RR4(PB) Raphanus raphanistrum subsp. la...    32   3.4    2
(FD985284) RR4H023JQ RR4(PB) Raphanus raphanistrum subsp. la...    32   3.4    2
(FD956612) RS3GM84TF RS3(RT) Raphanus sativus cDNA 5', mRNA ...    32   3.5    2
(FD952463) RS3GM84JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    32   3.5    2
(EY941156) RS2EF04TF RS2(RS) Raphanus sativus cDNA 5', mRNA ...    32   3.5    2
(FD967375) RR2GB54JQ RR2(MS) Raphanus raphanistrum subsp. ra...    32   3.5    2
(FD971169) RR2GB54TF RR2(MS) Raphanus raphanistrum subsp. ra...    32   3.5    2
(EY896851) RR1D206TF RR1(CS) Raphanus raphanistrum subsp. ma...    32   3.5    2
(EY893302) RR1D206JQ RR1(CS) Raphanus raphanistrum subsp. ma...    32   3.5    2
(EX753812) RR1CX23JQ RR1(CS) Raphanus raphanistrum subsp. ma...    32   3.5    2
(EX750316) RR1CX23TF RR1(CS) Raphanus raphanistrum subsp. ma...    32   3.6    2
(AP003367) Staphylococcus aureus subsp. aureus Mu50 plasmid ...    36   3.8    2
(AY875213) Homalodisca coagulata mitochondrion, complete gen...    38   3.9    4
(BG226596) kp91c05.y1 TBN95TM-SSFH Strongyloides stercoralis...    34   4.8    2
(AL772269) Mouse DNA sequence from clone RP23-31K8 on chromo...    44   5.1    1
(AC125353) Mus musculus BAC clone RP23-455B17 from 6, comple...    44   5.1    1
(AC122910) Mus musculus BAC clone RP23-54P3 from chromosome ...    44   5.1    1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    44   5.1    1
(AP005066) Oryza sativa Japonica Group genomic DNA, chromoso...    44   5.1    1
(AM456068) Vitis vinifera contig VV78X013381.6, whole genome...    44   5.1    1
(AC007519) Sequence of BAC F16N3 from Arabidopsis thaliana c...    44   5.1    1
(CQ431834) Sequence 16868 from Patent WO0151628.                   44   5.1    1

>(AU268403) Dictyostelium discoideum vegetative cDNA clone:VSI256,
           5' end single read.
          Length = 546

 Score =  349 bits (176), Expect(3) = 0.0
 Identities = 176/176 (100%)
 Strand = Plus / Plus


Query: 1   ccgtgaaaagaattattcagtaaagccaactatagatactttacattccgctgtattaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccgtgaaaagaattattcagtaaagccaactatagatactttacattccgctgtattaaa 60


Query: 61  tggttatacggaaataattaaatatctttgtgaaacgttaccaccgatctcgtcatttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggttatacggaaataattaaatatctttgtgaaacgttaccaccgatctcgtcatttcc 120


Query: 121 accaccattaagagtacctcaattacaacaagtattaatgatgttaatgacatgtg 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accaccattaagagtacctcaattacaacaagtattaatgatgttaatgacatgtg 176

 Score =  270 bits (136), Expect(3) = 0.0
 Identities = 136/136 (100%)
 Strand = Plus / Plus


Query: 410 caagattggattaatcaagaatacttttttcaattaattcaagattcaaatattcaaatt 469
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 caagattggattaatcaagaatacttttttcaattaattcaagattcaaatattcaaatt 469


Query: 470 tttaataatattatacttgatgaattgtttttatcaacttttttaataactgataaatta 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttaataatattatacttgatgaattgtttttatcaacttttttaataactgataaatta 529


Query: 530 aaagataaatttataa 545
           ||||||||||||||||
Sbjct: 530 aaagataaatttataa 545

 Score =  194 bits (98), Expect(3) = 0.0
 Identities = 98/98 (100%)
 Strand = Plus / Plus


Query: 184 caatgattttcaatcatttaccactattatacaatctaaatctataacgttttttagatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 caatgattttcaatcatttaccactattatacaatctaaatctataacgttttttagatt 243


Query: 244 tgtagaatctaaatctgttttagaatataagttacttg 281
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgtagaatctaaatctgttttagaatataagttacttg 281

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 542,464,481
Number of extensions: 35808449
Number of successful extensions: 3056411
Number of sequences better than 10.0: 161
Length of query: 545
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 522
Effective length of database: 93,106,754,628
Effective search space: 48601725915816
Effective search space used: 48601725915816
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U06933-1 (Contig-U06933-1Q) /CSM_Contig/Contig-U06933-1Q.Seq.d
         (545 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116030_2(AC116030|pid:none) Dictyostelium discoideum chromosom...   322   4e-87
AE010300_3327(AE010300|pid:none) Leptospira interrogans serovar ...    39   0.087
CP000487_1531(CP000487|pid:none) Campylobacter fetus subsp. fetu...    38   0.19
(Q9MUP3) RecName: Full=Uncharacterized protein ycf81;          S...    36   0.74
(Q2EEX5) RecName: Full=Uncharacterized membrane protein ycf78; A...    35   0.97
CP000770_186(CP000770|pid:none) Candidatus Sulcia muelleri GWSS,...    35   1.6
CP000082_667(CP000082|pid:none) Psychrobacter arcticus 273-4, co...    35   1.6
S10439(S10439) DNA-directed RNA polymerase (EC 2.7.7.6) beta' ch...    35   1.6
AL844509_387(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.6
(P21422) RecName: Full=DNA-directed RNA polymerase subunit beta'...    35   1.6
CP000776_151(CP000776|pid:none) Campylobacter hominis ATCC BAA-3...    34   2.8
AE015450_86(AE015450|pid:none) Mycoplasma gallisepticum strain R...    33   3.7
AF250284_67(AF250284|pid:none) Amsacta moorei entomopoxvirus, co...    33   3.7
BA000021_95(BA000021|pid:none) Wigglesworthia glossinidia endosy...    33   3.7
A96955(A96955) ferrous iron transport protein B (feoB-2) CAC0448...    33   3.7
AL844503_164(AL844503|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.8
CP000942_296(CP000942|pid:none) Ureaplasma parvum serovar 3 str....    33   4.8
AF033821_1(AF033821|pid:none) Drosophila melanogaster gypsy tran...    33   4.8
(P10403) RecName: Full=Retrovirus-related Env polyprotein from t...    33   4.8
AE002127_1(AE002127|pid:none) Ureaplasma parvum serovar 3 str. A...    33   4.8
(P41476) RecName: Full=Putative bifunctional polynucleotide kina...    33   6.3
AL844504_47(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    33   6.3
AY145471_84(AY145471|pid:none) Rachiplusia ou multiple nucleopol...    33   6.3
AL111168_1501(AL111168|pid:none) Campylobacter jejuni subsp. jej...    33   6.3
AL929351_47(AL929351|pid:none) Plasmodium falciparum strain 3D7,...    33   6.3
AP008983_183(AP008983|pid:none) Clostridium phage c-st genomic D...    32   8.2

>AC116030_2(AC116030|pid:none) Dictyostelium discoideum chromosome 2
           map 2090851-209760 strain AX4, complete sequence.
          Length = 773

 Score =  322 bits (825), Expect = 4e-87
 Identities = 163/180 (90%), Positives = 163/180 (90%)
 Frame = +2

Query: 5   EKNYSVKPTIDTLHSAVLNGYTEIIKYLCETLPPISSFXXXXXXXXXXXXXXXXXTCEKN 184
           EKNYSVKPTIDTLHSAVLNGYTEIIKYLCETLPPISSF                 TCEKN
Sbjct: 452 EKNYSVKPTIDTLHSAVLNGYTEIIKYLCETLPPISSFPPPLRVPQLQQVLMMLMTCEKN 511

Query: 185 NDFQSFTTIIQSKSITFFRFVESKSVLEYKLLENKVNFKSKFLNHLFKEKLIDSKAIFKR 364
           NDFQSFTTIIQSKSITFFRFVESKSVLEYKLLENKVNFKSKFLNHLFKEKLIDSKAIFKR
Sbjct: 512 NDFQSFTTIIQSKSITFFRFVESKSVLEYKLLENKVNFKSKFLNHLFKEKLIDSKAIFKR 571

Query: 365 YCKIDLNLFLLFKYNQDWINQEYFFQLIQDSNIQIFNNIILDELFLSTFLITDKLKDKFI 544
           YCKIDLNLFLLFKYNQDWINQEYFFQLIQDSNIQIFNNIILDELFLSTFLITDKLKDKFI
Sbjct: 572 YCKIDLNLFLLFKYNQDWINQEYFFQLIQDSNIQIFNNIILDELFLSTFLITDKLKDKFI 631

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 538,417,529
Number of extensions: 7909018
Number of successful extensions: 22407
Number of sequences better than 10.0: 26
Number of HSP's gapped: 22388
Number of HSP's successfully gapped: 26
Length of query: 181
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 61
Effective length of database: 656,452,579
Effective search space: 40043607319
Effective search space used: 40043607319
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.72  gvh: 0.57  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U06933-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0