| Contig-U06930-1 |
| Contig ID |
Contig-U06930-1 |
| Contig update |
2001. 8.30 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
597 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
1581685 |
| End point |
1581108 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
2 |
| Number of EST |
4 |
| Link to clone list |
U06930 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.11 |
| Homology vs DNA |
Query= Contig-U06930-1 (Contig-U06930-1Q) /CSM_Contig/Contig-U06930-1Q.Seq.d
(597 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU269717) Dictyostelium discoideum vegetative cDNA clone:VS... 916 0.0 2
(AU269718) Dictyostelium discoideum vegetative cDNA clone:VS... 916 0.0 1
(AU268349) Dictyostelium discoideum vegetative cDNA clone:VS... 916 0.0 1
(AU268348) Dictyostelium discoideum vegetative cDNA clone:VS... 916 0.0 1
(FE268273) CAZO6646.fwd CAZO Naegleria gruberi Flagellate St... 42 5e-04 2
(AZ523555) 221PbA02 Pb MBN #21 Plasmodium berghei genomic 3'... 44 0.24 2
(BZ561463) pacs2-164_3274.x4 pacs2-164 Pseudomonas aeruginos... 40 0.26 2
(ES503026) BIG_AF_10843 Brine Shrimp diapaused embryos (cyst... 38 0.30 2
(ES503079) BIG_AF_10896 Brine Shrimp diapaused embryos (cyst... 38 0.32 2
(ES503076) BIG_AF_10893 Brine Shrimp diapaused embryos (cyst... 38 0.34 2
(AC128842) Rattus norvegicus clone CH230-463I22, *** SEQUENC... 48 0.36 1
(ES504440) BIG_AF_12257 Brine Shrimp diapaused embryos (cyst... 38 0.37 2
(ES503356) BIG_AF_11173 Brine Shrimp diapaused embryos (cyst... 38 0.45 2
(ES504371) BIG_AF_12188 Brine Shrimp diapaused embryos (cyst... 36 0.47 2
(ES524469) BIG_AF_32289 Brine Shrimp embryos, 15 hours after... 38 0.50 2
(ES505166) BIG_AF_12983 Brine Shrimp diapaused embryos (cyst... 38 0.52 2
(ES504147) BIG_AF_11964 Brine Shrimp diapaused embryos (cyst... 38 0.55 2
(CT858987) Oryza sativa Indica Group EST sequence:CONTIG11264. 40 0.57 2
(EW245071) rhlv24b_b21.y1 hlv Sus scrofa cDNA 5', mRNA seque... 38 0.57 2
(AZ524109) 227PbD08 Pb MBN #21 Plasmodium berghei genomic 3'... 44 0.58 2
(EW239641) rhlv26b_n3.y1 hlv Sus scrofa cDNA 5', mRNA sequence. 38 0.60 2
(EC824851) SME00005609 esmbsro2 Sawyeria marylandensis cDNA,... 36 0.67 2
(BZ564859) pacs2-164_4958.x1 pacs2-164 Pseudomonas aeruginos... 40 0.70 2
(CF409893) CH3#063_D04MR Canine heart normalized cDNA Librar... 40 0.75 2
(CF409934) CH3#063_F06MR Canine heart normalized cDNA Librar... 40 0.76 2
(DN979023) SV5_57A05_SV5_57_034 SV5 Solanum chacoense cDNA, ... 38 0.77 2
(EW673020) rute2116b_g17.y1 ute Sus scrofa cDNA 5', mRNA seq... 38 0.77 2
(EV152836) 0096107 Brassica napus Bud library Brassica napus... 38 0.84 2
(BZ573743) msh2_3341.x1 msh Pseudomonas aeruginosa genomic c... 40 0.85 2
(BZ554967) pacs1-60_4949.x1 pacs1-60 Pseudomonas aeruginosa ... 40 0.89 2
(EW189008) rfce04c_e19.y1 fce Sus scrofa cDNA 5', mRNA seque... 38 0.95 2
(U03437) Yeast integrative vector pRS305 with LEU2 marker, c... 40 1.2 2
(U64693) Yeast integrating vector pRSQ2-LEU2, complete seque... 40 1.2 2
(BZ566520) pacs2-164_6124.x1 pacs2-164 Pseudomonas aeruginos... 40 1.2 2
(ES506640) BIG_AF_14457 Brine Shrimp diapaused embryos (cyst... 36 1.2 2
(EW420414) rnbm11b_k14.y1 nbm Sus scrofa cDNA 5', mRNA seque... 38 1.2 2
(U03441) Yeast centromere vector pRS315 with LEU2 marker, co... 40 1.3 2
(AF322450) Homo sapiens chromosome 17 clone BAC407I21 map 17... 40 1.4 2
(CX002192) iv45d08.b1 Left Cardiac Ventricle (DOGEST7) Canis... 40 1.4 2
(AM467672) Vitis vinifera contig VV78X174373.10, whole genom... 46 1.4 1
(AC162576) Bos taurus clone CH240-118N12, WORKING DRAFT SEQU... 46 1.4 1
(CU302401) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1
(AC163314) Bos taurus clone CH240-137A16, WORKING DRAFT SEQU... 46 1.4 1
(EK061080) 1092960082880 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(DR026332) Osmo00037 F. cylindrus osmotic stress library Fra... 46 1.4 1
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 46 1.4 1
(CP000655) Polynucleobacter sp. QLW-P1DMWA-1, complete genome. 46 1.4 1
(EX508881) NC_EG116231e08 EG1 Schistosoma mansoni cDNA clone... 40 1.5 2
(EW240508) rhlv08b_p10.y1 hlv Sus scrofa cDNA 5', mRNA seque... 38 1.5 2
(AF173953) Cloning vector pDDB57 complete sequence. 40 1.5 2
(EW205695) rfhi4033b_o14.y1 fhi Sus scrofa cDNA 5', mRNA seq... 38 1.6 2
(EW067291) rduo429b_c15.y1 duo Sus scrofa cDNA 5', mRNA sequ... 38 1.6 2
(CT847442) Oryza sativa Indica Group EST sequence:OSIGCSN031... 40 1.7 2
(EV980358) rcly33b_i3.y1 cly Sus scrofa cDNA 5', mRNA sequence. 38 1.7 2
(CB661752) OSJNEd05A21.r OSJNEd Oryza sativa Japonica Group ... 38 1.7 2
(CX263951) LB2383 cDNA library of Limonium bicolor (Bunge) K... 38 1.7 2
(DI147880) GENOME SEQUENCE OF ZYMONAS MOBILIS ZM4 AND NOVEL ... 38 1.7 2
(CQ514627) Sequence 46494 from Patent WO0160860. 38 1.7 2
(CN469796) hh_Ab_Brain2000_000005663 A. burtoni Cichlid Brai... 38 1.7 2
(EW044726) rpigcf0_008678.y1 ctl Sus scrofa cDNA 5', mRNA se... 38 1.8 2
(EW077512) rebs34c_j24.y1 ebs Sus scrofa cDNA 5', mRNA seque... 38 1.8 2
(EW253891) rhyp18c_b6.y1 hyp Sus scrofa cDNA 5', mRNA sequence. 38 1.9 2
(EW254406) rhyp25c_e14.y1 hyp Sus scrofa cDNA 5', mRNA seque... 38 1.9 2
(BM108333) a12f05 cDNA Peking library 2D SCN3 Glycine max cD... 38 2.0 2
(EW183503) rfcc24b_n10.y1 fcc Sus scrofa cDNA 5', mRNA seque... 38 2.0 2
(EW251741) rhyp03c_l23.y1 hyp Sus scrofa cDNA 5', mRNA seque... 38 2.0 2
(EW169231) rfbs3938b_i3.y1 fbs Sus scrofa cDNA 5', mRNA sequ... 38 2.0 2
(EW670364) rute2115b_o14.y1 ute Sus scrofa cDNA 5', mRNA seq... 38 2.1 2
(EW043659) rpigcf0_017624.y1 ctl Sus scrofa cDNA 5', mRNA se... 38 2.1 2
(EW670789) rute2129b_b15.y1 ute Sus scrofa cDNA 5', mRNA seq... 42 2.1 2
(CQ514914) Sequence 46781 from Patent WO0160860. 38 2.1 2
(U67875) pESP-I yeast expression vector, complete sequence. 40 2.1 2
(EW087742) recc2834c_m11.y1 ecc Sus scrofa cDNA 5', mRNA seq... 38 2.2 2
(AC125749) Rattus norvegicus clone CH230-172B15, WORKING DRA... 42 2.3 3
(BZ563771) pacs2-164_4414.x3 pacs2-164 Pseudomonas aeruginos... 40 2.3 2
(CO222229) WS01015.B21_G10 SS-R-N-A-11 Picea sitchensis cDNA... 36 2.5 2
(AW333311) S20A11 AGS-1 Pneumocystis carinii cDNA 3', mRNA s... 38 2.6 2
(CF413580) CH3#039_G12T3 Canine heart normalized cDNA Librar... 42 2.6 2
(BV202171) sqnm208383 Human DNA (Sequenom) Homo sapiens STS ... 40 2.6 2
(CB165999) RKT603019884.R1 CSEQFXN33 liver Bos taurus cDNA, ... 40 2.7 2
(BU751162) CH3#038_C08T3 Canine heart normalized cDNA Librar... 40 2.7 2
(BG985826) 5158t3 NICHD_Zebrafish_normalized_I Danio rerio c... 40 2.7 2
(BX324135) Zebrafish DNA sequence from clone DKEY-16J16. 34 2.7 2
(AC179532) Strongylocentrotus purpuratus clone R3-6F17, WORK... 38 2.8 4
(DY579533) A043-G2 Acropora millepora postsettlement library... 38 2.8 2
(AC016224) Homo sapiens clone RP11-26K12, WORKING DRAFT SEQU... 34 2.8 2
(DN980150) SV6_23B02_SV6_23_013 SV6 Solanum chacoense cDNA, ... 40 2.8 2
(BV452249) G591P621075RF3.T0 Clint Pan troglodytes verus STS... 38 2.8 2
(CB635767) OSIIEb16H18.r OSIIEb Oryza sativa Indica Group cD... 38 2.8 2
(CB682933) OSJNEf10L23.r OSJNEf Oryza sativa Japonica Group ... 38 2.9 2
(AC067742) Homo sapiens chromosome 10 clone RP11-508P23, com... 34 2.9 2
(CF412221) CH3#078_D08MR Canine heart normalized cDNA Librar... 40 2.9 2
(EV168243) 0145402 Brassica napus Etiolated seedlings (Uni-Z... 38 2.9 2
(CF411656) CH3#075_A09MR Canine heart normalized cDNA Librar... 40 2.9 2
(CB621241) OSIIEa06P18.r OSIIEa Oryza sativa Indica Group cD... 38 2.9 2
(CB633699) OSIIEb12L14.r OSIIEb Oryza sativa Indica Group cD... 38 3.0 2
(CO761368) brain_EST04560 Brain cDNA Library Gallus gallus c... 38 3.0 2
(FE674522) Pv038Dr_M13F_H02.ab1 Phaseolus vulgaris cv Early ... 40 3.1 2
(BU748976) CH3#024_A09T3 Canine heart normalized cDNA Librar... 40 3.1 2
(FE675651) Pv059Cr_M13R_A08.ab1 Phaseolus vulgaris cv Early ... 40 3.2 2
>(AU269717) Dictyostelium discoideum vegetative cDNA clone:VSJ303,
5' end single read.
Length = 591
Score = 916 bits (462), Expect(2) = 0.0
Identities = 462/462 (100%)
Strand = Plus / Plus
Query: 77 taccagtaccaccatttaataatattgaagatgcaattaaaaaagttagaatggcagaag 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 taccagtaccaccatttaataatattgaagatgcaattaaaaaagttagaatggcagaag 136
Query: 137 atgcatggaattcaaggaatgcagaaactgtttcacttgcatacagtttggatacaaaat 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 atgcatggaattcaaggaatgcagaaactgtttcacttgcatacagtttggatacaaaat 196
Query: 197 ggagaaataggaatgaatttattaatggtagaacacaagttgttgaatttttaaaaaaga 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ggagaaataggaatgaatttattaatggtagaacacaagttgttgaatttttaaaaaaga 256
Query: 257 aatgggaaaaagaggttgaatatagactaattaaagagttgtggacatttcaagctggta 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatgggaaaaagaggttgaatatagactaattaaagagttgtggacatttcaagctggta 316
Query: 317 gtaatagaattgccgtcagatttgcatatgaatggaaagatttaaatggtaattggttta 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtaatagaattgccgtcagatttgcatatgaatggaaagatttaaatggtaattggttta 376
Query: 377 gatcatatggaaatgaaaattgggaattcaatgaatttggtctaatggttcaaagacatg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gatcatatggaaatgaaaattgggaattcaatgaatttggtctaatggttcaaagacatg 436
Query: 437 catcaataaatgatctctcaattagtgaatcacaaagattatttcattggccatgcggta 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 catcaataaatgatctctcaattagtgaatcacaaagattatttcattggccatgcggta 496
Query: 497 aaagacctgatgatcatccaagtttatcagatttaggtttat 538
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaagacctgatgatcatccaagtttatcagatttaggtttat 538
Score = 42.1 bits (21), Expect(2) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 taccgggccccccctcgaggg 21
|||||||||||||||||||||
Sbjct: 1 taccgggccccccctcgaggg 21
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 638,212,153
Number of extensions: 43158446
Number of successful extensions: 4015689
Number of sequences better than 10.0: 297
Length of query: 597
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 574
Effective length of database: 93,106,754,628
Effective search space: 53443277156472
Effective search space used: 53443277156472
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 6.23 |
| Homology vs Protein |
Query= Contig-U06930-1 (Contig-U06930-1Q) /CSM_Contig/Contig-U06930-1Q.Seq.d
(597 letters)
Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CP000647_3992(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 233 4e-60
CP000125_1514(CP000125|pid:none) Burkholderia pseudomallei 1710b... 229 6e-59
CP000571_11(CP000571|pid:none) Burkholderia pseudomallei 668 chr... 229 6e-59
CP000085_11(CP000085|pid:none) Burkholderia thailandensis E264 c... 228 7e-59
CP000442_376(CP000442|pid:none) Burkholderia ambifaria AMMD chro... 228 1e-58
CP000094_2876(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 228 1e-58
BX571867_51(BX571867|pid:none) Photorhabdus luminescens subsp. l... 226 3e-58
CP000388_1119(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 225 6e-58
AM039952_4431(AM039952|pid:none) Xanthomonas campestris pv. vesi... 225 6e-58
CP000091_1044(CP000091|pid:none) Ralstonia eutropha JMP134 chrom... 225 6e-58
CP000379_2147(CP000379|pid:none) Burkholderia cenocepacia AU 105... 224 1e-57
CP000744_6096(CP000744|pid:none) Pseudomonas aeruginosa PA7, com... 224 2e-57
CP001053_2914(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 224 2e-57
CP001069_728(CP001069|pid:none) Ralstonia pickettii 12J chromoso... 223 2e-57
CP000615_466(CP000615|pid:none) Burkholderia vietnamiensis G4 ch... 223 3e-57
AP009386_8(AP009386|pid:none) Burkholderia multivorans ATCC 1761... 223 4e-57
CP000438_5714(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 222 7e-57
CP000152_3167(CP000152|pid:none) Burkholderia sp. 383 chromosome... 221 1e-56
CP000828_4725(CP000828|pid:none) Acaryochloris marina MBIC11017,... 221 1e-56
CP001037_1822(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 220 3e-56
CP000949_3079(CP000949|pid:none) Pseudomonas putida W619, comple... 220 3e-56
AM747721_17(AM747721|pid:none) Burkholderia cenocepacia J2315 ch... 220 3e-56
CP000360_2213(CP000360|pid:none) Acidobacteria bacterium Ellin34... 219 5e-56
CP000908_3062(CP000908|pid:none) Methylobacterium extorquens PA1... 218 8e-56
CP001280_2089(CP001280|pid:none) Methylocella silvestris BL2, co... 218 1e-55
CP000480_6039(CP000480|pid:none) Mycobacterium smegmatis str. MC... 218 1e-55
CP000949_3080(CP000949|pid:none) Pseudomonas putida W619, comple... 218 1e-55
AE008692_745(AE008692|pid:none) Zymomonas mobilis subsp. mobilis... 217 2e-55
CP000075_3481(CP000075|pid:none) Pseudomonas syringae pv. syring... 216 3e-55
CP000655_1001(CP000655|pid:none) Polynucleobacter necessarius su... 216 3e-55
CP000377_2245(CP000377|pid:none) Silicibacter sp. TM1040, comple... 215 9e-55
CP001191_903(CP001191|pid:none) Rhizobium leguminosarum bv. trif... 214 1e-54
CP000826_3249(CP000826|pid:none) Serratia proteamaculans 568, co... 214 1e-54
CP000133_1262(CP000133|pid:none) Rhizobium etli CFN 42, complete... 214 2e-54
CP000884_5639(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 214 2e-54
AE007872_381(AE007872|pid:none) Agrobacterium tumefaciens str. C... 213 2e-54
CP001074_1354(CP001074|pid:none) Rhizobium etli CIAT 652, comple... 213 3e-54
CU234118_6724(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 212 6e-54
CP001052_1068(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 212 7e-54
CP001016_1451(CP001016|pid:none) Beijerinckia indica subsp. indi... 212 7e-54
AM260480_1080(AM260480|pid:none) Ralstonia eutropha H16 chromoso... 211 2e-53
AE016825_2698(AE016825|pid:none) Chromobacterium violaceum ATCC ... 210 2e-53
CP000712_2679(CP000712|pid:none) Pseudomonas putida F1, complete... 210 3e-53
CP000510_2515(CP000510|pid:none) Psychromonas ingrahamii 37, com... 210 3e-53
CU633750_897(CU633750|pid:none) Cupriavidus taiwanensis str. LMG... 209 6e-53
CP001029_3251(CP001029|pid:none) Methylobacterium populi BJ001, ... 207 2e-52
CP000926_1960(CP000926|pid:none) Pseudomonas putida GB-1, comple... 205 9e-52
CT573326_3165(CT573326|pid:none) Pseudomonas entomophila str. L4... 204 2e-51
CP001349_5131(CP001349|pid:none) Methylobacterium nodulans ORS 2... 203 3e-51
AP008957_479(AP008957|pid:none) Rhodococcus erythropolis PR4 DNA... 202 4e-51
CP000943_4766(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 202 4e-51
CP000927_2378(CP000927|pid:none) Caulobacter sp. K31, complete g... 200 3e-50
CP001196_708(CP001196|pid:none) Oligotropha carboxidovorans OM5 ... 200 3e-50
CP001001_4623(CP001001|pid:none) Methylobacterium radiotolerans ... 200 3e-50
BX548174_425(BX548174|pid:none) Prochlorococcus marinus MED4 com... 197 2e-49
AP009384_4201(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 196 4e-49
CP001341_42(CP001341|pid:none) Arthrobacter chlorophenolicus A6,... 195 9e-49
CP000110_1088(CP000110|pid:none) Synechococcus sp. CC9605, compl... 193 3e-48
BX569692_366(BX569692|pid:none) Synechococcus sp. WH8102 complet... 191 1e-47
CP000431_2495(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 191 1e-47
CP001117_8(CP001117|pid:none) Deinococcus deserti VCD115 plasmid... 191 2e-47
CP000580_5560(CP000580|pid:none) Mycobacterium sp. JLS, complete... 190 3e-47
CP000384_5210(CP000384|pid:none) Mycobacterium sp. MCS, complete... 189 4e-47
BX294149_245(BX294149|pid:none) Rhodopirellula baltica SH 1 comp... 188 1e-46
CP000474_413(CP000474|pid:none) Arthrobacter aurescens TC1, comp... 187 2e-46
BA000040_7210(BA000040|pid:none) Bradyrhizobium japonicum USDA 1... 186 3e-46
AE008923_4262(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 185 7e-46
CP001344_1681(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 181 2e-44
CP000250_4241(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 181 2e-44
CP000854_372(CP000854|pid:none) Mycobacterium marinum M, complet... 169 4e-41
CP001032_2252(CP001032|pid:none) Opitutus terrae PB90-1, complet... 169 4e-41
CP000325_3882(CP000325|pid:none) Mycobacterium ulcerans Agy99, c... 167 2e-40
AM238664_822(AM238664|pid:none) Streptomyces ambofaciens ATCC 23... 161 1e-38
CU458896_3029(CU458896|pid:none) Mycobacterium abscessus chromos... 158 9e-38
CP000934_13(CP000934|pid:none) Cellvibrio japonicus Ueda107, com... 158 9e-38
AE016958_3571(AE016958|pid:none) Mycobacterium avium subsp. para... 155 6e-37
AF072709_1(AF072709|pid:none) Streptomyces lividans amplifiable ... 155 8e-37
CP000155_6500(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 154 1e-36
AM420293_5434(AM420293|pid:none) Saccharopolyspora erythraea NRR... 153 4e-36
AP009152_1691(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, ... 152 5e-36
BX640424_184(BX640424|pid:none) Bordetella parapertussis strain ... 121 2e-26
AM270285_2(AM270285|pid:none) Aspergillus niger contig An12c0290... 102 1e-20
AM920437_2368(AM920437|pid:none) Penicillium chrysogenum Wiscons... 99 7e-20
AE008923_4267(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 96 8e-19
BA000028_2358(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 36 0.71
EU274328_1(EU274328|pid:none) Plasmodium vivax isolate 1059 tryp... 34 2.7
EU274319_1(EU274319|pid:none) Plasmodium vivax isolate 1201 tryp... 34 2.7
CP000781_4045(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 34 2.7
EU274327_1(EU274327|pid:none) Plasmodium vivax isolate 1022 tryp... 34 2.7
EU274324_1(EU274324|pid:none) Plasmodium vivax isolate 1017 tryp... 34 2.7
EU274314_1(EU274314|pid:none) Plasmodium vivax isolate 1023 tryp... 34 2.7
EU274320_1(EU274320|pid:none) Plasmodium vivax isolate 840 trypt... 34 2.7
EU274318_1(EU274318|pid:none) Plasmodium vivax isolate 1054 tryp... 34 2.7
AB374233_1(AB374233|pid:none) Alexandrium catenella mitochondria... 34 3.5
(P52123) RecName: Full=Uncharacterized protein yfjH; &A65041(A6... 34 3.5
CP000383_546(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 34 3.5
T08635(T08635) hypothetical protein f358 - Escherichia coli &U3... 34 3.5
DQ082987_1(DQ082987|pid:none) Alexandrium tamarense cytochrome b... 33 5.9
(Q7YN57) RecName: Full=DNA-directed RNA polymerase subunit beta;... 33 5.9
CP000903_542(CP000903|pid:none) Bacillus weihenstephanensis KBAB... 33 6.0
EU544447_1(EU544447|pid:none) Phragmanthera crassicaulis voucher... 33 7.7
>CP000647_3992(CP000647|pid:none) Klebsiella pneumoniae subsp.
pneumoniae MGH 78578, complete sequence.
Length = 156
Score = 233 bits (593), Expect = 4e-60
Identities = 108/159 (67%), Positives = 133/159 (83%)
Frame = +1
Query: 61 MQEIKLPVPPFNNIEDAIKKVRMAEDAWNSRNAETVSLAYSLDTKWRNRNEFINGRTQVV 240
M E + P+PPF + AI+KVR AED WNSR+AE V+LAY++D++WRNR+EF++GR Q+V
Sbjct: 1 MTEQRPPLPPFTR-DSAIQKVRAAEDGWNSRDAEKVALAYTVDSEWRNRSEFVHGRGQIV 59
Query: 241 EFLKKKWEKEVEYRLIKELWTFQAGSNRIAVRFAYEWKDLNGNWFRSYGNENWEFNEFGL 420
EFL++KW KE +YRLIKELW +Q NRIAVRFAYEW D +GNWFRSYGNENWEF++ GL
Sbjct: 60 EFLQRKWRKEQQYRLIKELWAWQ--ENRIAVRFAYEWCDDSGNWFRSYGNENWEFDKHGL 117
Query: 421 MVQRHASINDLSISESQRLFHWPCGKRPDDHPSLSDLGL 537
M R+A INDL I+ES+RLFHWP G+RPDDHP LSDLGL
Sbjct: 118 MQTRYACINDLPIAESERLFHWPQGRRPDDHPGLSDLGL 156
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 895,019,208
Number of extensions: 17587501
Number of successful extensions: 51491
Number of sequences better than 10.0: 101
Number of HSP's gapped: 51388
Number of HSP's successfully gapped: 101
Length of query: 199
Length of database: 1,040,966,779
Length adjustment: 122
Effective length of query: 77
Effective length of database: 650,044,009
Effective search space: 50053388693
Effective search space used: 50053388693
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |